Psyllid ID: psy10443
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 195 | 2.2.26 [Sep-21-2011] | |||||||
| Q6RUV5 | 192 | Ras-related C3 botulinum | yes | N/A | 0.969 | 0.984 | 0.724 | 2e-82 | |
| P63001 | 192 | Ras-related C3 botulinum | yes | N/A | 0.969 | 0.984 | 0.724 | 2e-82 | |
| P63000 | 192 | Ras-related C3 botulinum | yes | N/A | 0.969 | 0.984 | 0.724 | 2e-82 | |
| P62999 | 192 | Ras-related C3 botulinum | yes | N/A | 0.969 | 0.984 | 0.724 | 2e-82 | |
| P62998 | 192 | Ras-related C3 botulinum | yes | N/A | 0.969 | 0.984 | 0.724 | 2e-82 | |
| Q03206 | 191 | Ras-related protein ced-1 | yes | N/A | 0.964 | 0.984 | 0.698 | 8e-79 | |
| P15153 | 192 | Ras-related C3 botulinum | no | N/A | 0.979 | 0.994 | 0.680 | 9e-79 | |
| Q9TU25 | 192 | Ras-related C3 botulinum | no | N/A | 0.969 | 0.984 | 0.693 | 3e-78 | |
| Q05144 | 192 | Ras-related C3 botulinum | no | N/A | 0.969 | 0.984 | 0.687 | 3e-78 | |
| O88931 | 192 | Ras-related C3 botulinum | no | N/A | 0.969 | 0.984 | 0.682 | 7e-78 |
| >sp|Q6RUV5|RAC1_RAT Ras-related C3 botulinum toxin substrate 1 OS=Rattus norvegicus GN=Rac1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 304 bits (779), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 137/189 (72%), Positives = 168/189 (88%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 RRQRKCVII 195
+R+RKC+++
Sbjct: 184 KRKRKCLLL 192
|
Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states. In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization and growth-factor induced formation of membrane ruffles. Rac1 p21/rho GDI heterodimer is the active component of the cytosolic factor sigma 1, which is involved in stimulation of the NADPH oxidase activity in macrophages. Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly (By similarity). Stimulates PKN2 kinase activity (By similarity). In concert with RAB7A, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts. Rattus norvegicus (taxid: 10116) |
| >sp|P63001|RAC1_MOUSE Ras-related C3 botulinum toxin substrate 1 OS=Mus musculus GN=Rac1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 304 bits (779), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 137/189 (72%), Positives = 168/189 (88%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 RRQRKCVII 195
+R+RKC+++
Sbjct: 184 KRKRKCLLL 192
|
Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states. In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization and growth-factor induced formation of membrane ruffles. Rac1 p21/rho GDI heterodimer is the active component of the cytosolic factor sigma 1, which is involved in stimulation of the NADPH oxidase activity in macrophages. Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly. Stimulates PKN2 kinase activity. In concert with RAB7A, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts. Mus musculus (taxid: 10090) |
| >sp|P63000|RAC1_HUMAN Ras-related C3 botulinum toxin substrate 1 OS=Homo sapiens GN=RAC1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 304 bits (779), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 137/189 (72%), Positives = 168/189 (88%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 RRQRKCVII 195
+R+RKC+++
Sbjct: 184 KRKRKCLLL 192
|
Isoform B has an accelerated GEF-independent GDP/GTP exchange and an impaired GTP hydrolysis, which is restored partially by GTPase-activating proteins. It is able to bind to the GTPase-binding domain of PAK but not full-length PAK in a GTP-dependent manner, suggesting that the insertion does not completely abolish effector interaction. Homo sapiens (taxid: 9606) |
| >sp|P62999|RAC1_CANFA Ras-related C3 botulinum toxin substrate 1 OS=Canis familiaris GN=RAC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 304 bits (779), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 137/189 (72%), Positives = 168/189 (88%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 RRQRKCVII 195
+R+RKC+++
Sbjct: 184 KRKRKCLLL 192
|
Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states. In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization and growth-factor induced formation of membrane ruffles. Rac1 p21/rho GDI heterodimer is the active component of the cytosolic factor sigma 1, which is involved in stimulation of the NADPH oxidase activity in macrophages. Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly. Stimulates PKN2 kinase activity. In concert with RAB7A, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts. Canis familiaris (taxid: 9615) |
| >sp|P62998|RAC1_BOVIN Ras-related C3 botulinum toxin substrate 1 OS=Bos taurus GN=RAC1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 304 bits (779), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 137/189 (72%), Positives = 168/189 (88%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 RRQRKCVII 195
+R+RKC+++
Sbjct: 184 KRKRKCLLL 192
|
Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states. In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization and growth-factor induced formation of membrane ruffles. Stimulates PKN2 kinase activity. In concert with RAB7A, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts. Bos taurus (taxid: 9913) |
| >sp|Q03206|RAC1_CAEEL Ras-related protein ced-10 OS=Caenorhabditis elegans GN=ced-10 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 292 bits (748), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 132/189 (69%), Positives = 163/189 (86%), Gaps = 1/189 (0%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG P++LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGRPINLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+++ +P+SF+NV +KWYPE+ HHCP+ PIILVGTK DLREDR
Sbjct: 64 YDRLRPLSYPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKADLREDR 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L PV + QG +A +I+AVKY+ECSALTQRGL+QVFDEA+RAVL P P +
Sbjct: 124 DTVERLRERRLQPVSQTQGYVMAKEIKAVKYLECSALTQRGLKQVFDEAIRAVLTP-PQR 182
Query: 187 RRQRKCVII 195
++ KC ++
Sbjct: 183 AKKSKCTVL 191
|
Required in engulfing to control the phagocytosis of apoptotic cell corpses. Involved in hypodermal cell fusion, together with pak-1 and cdc-42, leading to embryonic body elongation, which involves dramatic cytoskeletal reorganization. Ced-2 and ced-5 function to activate ced-10 in a GTPase signaling pathway that controls the polarized extension of cell surfaces. Caenorhabditis elegans (taxid: 6239) |
| >sp|P15153|RAC2_HUMAN Ras-related C3 botulinum toxin substrate 2 OS=Homo sapiens GN=RAC2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (748), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 130/191 (68%), Positives = 165/191 (86%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VD PV+LGLWDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
EDYDRLRPLSYPQTDVFLIC+S+VSP+S++NV +KW+PE++HHCP PIILVGTK+DLR+
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 121
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
D++T+ L E+ L+P+ QG LA +I +VKY+ECSALTQRGL+ VFDEA+RAVL P+P
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQP 181
Query: 185 VKRRQRKCVII 195
++++R C ++
Sbjct: 182 TRQQKRACSLL 192
|
Plasma membrane-associated small GTPase which cycles between an active GTP-bound and inactive GDP-bound state. In active state binds to a variety of effector proteins to regulate cellular responses, such as secretory processes, phagocytose of apoptotic cells and epithelial cell polarization. Augments the production of reactive oxygen species (ROS) by NADPH oxidase. Homo sapiens (taxid: 9606) |
| >sp|Q9TU25|RAC2_BOVIN Ras-related C3 botulinum toxin substrate 2 OS=Bos taurus GN=RAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (744), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 131/189 (69%), Positives = 163/189 (86%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VD PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+S++NV +KW+PE++HHCP PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG LA +I +VKY+ECSALTQRGL+ VFDEA+RAVL P+P +
Sbjct: 124 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTR 183
Query: 187 RRQRKCVII 195
++R C I+
Sbjct: 184 PQKRPCSIL 192
|
Plasma membrane-associated small GTPase which cycles between an active GTP-bound and inactive GDP-bound state. In active state binds to a variety of effector proteins to regulate cellular responses, such as secretory processes, phagocytose of apoptotic cells and epithelial cell polarization. Augments the production of reactive oxygen species (ROS) by NADPH oxidase. Bos taurus (taxid: 9913) |
| >sp|Q05144|RAC2_MOUSE Ras-related C3 botulinum toxin substrate 2 OS=Mus musculus GN=Rac2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (743), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 130/189 (68%), Positives = 163/189 (86%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VD PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+S++NV +KW+PE++HHCP PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG LA I +VKY+ECSALTQRGL+ VFDEA+RAVL P+P +
Sbjct: 124 DTIEKLKEKKLAPITYPQGLALAKDIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTR 183
Query: 187 RRQRKCVII 195
+++R C ++
Sbjct: 184 QQKRPCSLL 192
|
Plasma membrane-associated small GTPase which cycles between an active GTP-bound and inactive GDP-bound state. In active state binds to a variety of effector proteins to regulate cellular responses, such as secretory processes, phagocytose of apoptotic cells and epithelial cell polarization. Augments the production of reactive oxygen species (ROS) by NADPH oxidase. Mus musculus (taxid: 10090) |
| >sp|O88931|RAC2_CAVPO Ras-related C3 botulinum toxin substrate 2 OS=Cavia porcellus GN=RAC2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 289 bits (740), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 129/189 (68%), Positives = 162/189 (85%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VD PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+S++NV + WYP+++HHCP PIIL+GTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASYENVHANWYPKVRHHCPSTPIILLGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
ET+ L E+ L+P+ QG LA +I +VKY+ECSALTQRGL+ VFDEA+RAVL P+P +
Sbjct: 124 ETIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTR 183
Query: 187 RRQRKCVII 195
++R C ++
Sbjct: 184 PQKRACSLL 192
|
Plasma membrane-associated small GTPase which cycles between an active GTP-bound and inactive GDP-bound state. In active state binds to a variety of effector proteins to regulate cellular responses, such as secretory processes, phagocytose of apoptotic cells and epithelial cell polarization. Augments the production of reactive oxygen species (ROS) by NADPH oxidase. Cavia porcellus (taxid: 10141) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 195 | ||||||
| 347966184 | 195 | AGAP001573-PA [Anopheles gambiae str. PE | 1.0 | 1.0 | 0.907 | 1e-102 | |
| 157142042 | 195 | rac gtpase [Aedes aegypti] gi|170055639| | 1.0 | 1.0 | 0.897 | 1e-102 | |
| 357627629 | 195 | putative rac gtpase [Danaus plexippus] | 1.0 | 1.0 | 0.902 | 1e-102 | |
| 66560175 | 195 | PREDICTED: ras-related C3 botulinum toxi | 1.0 | 1.0 | 0.897 | 1e-102 | |
| 345487497 | 195 | PREDICTED: ras-related C3 botulinum toxi | 1.0 | 1.0 | 0.892 | 1e-101 | |
| 91077046 | 195 | PREDICTED: similar to rac gtpase [Tribol | 1.0 | 1.0 | 0.897 | 1e-101 | |
| 242015398 | 199 | RAC GTPase, putative [Pediculus humanus | 0.979 | 0.959 | 0.910 | 1e-101 | |
| 125773267 | 195 | GA18989 [Drosophila pseudoobscura pseudo | 1.0 | 1.0 | 0.897 | 1e-101 | |
| 328781558 | 200 | PREDICTED: ras-related C3 botulinum toxi | 0.989 | 0.965 | 0.896 | 1e-101 | |
| 195053740 | 195 | GH19274 [Drosophila grimshawi] gi|195113 | 1.0 | 1.0 | 0.892 | 1e-100 |
| >gi|347966184|ref|XP_551238.2| AGAP001573-PA [Anopheles gambiae str. PEST] gi|333470173|gb|EAL38571.2| AGAP001573-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/195 (90%), Positives = 189/195 (96%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP VDG+ VSLGLWD
Sbjct: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGVQVSLGLWD 60
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDYDRLRPLSYPQTDVFLICYSV SPSSF+NVTSKWYPE+KHHCPDAPIILVGTKI
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEIKHHCPDAPIILVGTKI 120
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLREDRET++LL++Q LS +KREQGQKLANKIRAVKYMECSALTQRGL+QVFDEAVRAVL
Sbjct: 121 DLREDRETISLLADQGLSALKREQGQKLANKIRAVKYMECSALTQRGLKQVFDEAVRAVL 180
Query: 181 RPEPVKRRQRKCVII 195
RPEP+KRRQRKCV++
Sbjct: 181 RPEPLKRRQRKCVVM 195
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157142042|ref|XP_001647792.1| rac gtpase [Aedes aegypti] gi|170055639|ref|XP_001863671.1| cell division control protein 42 [Culex quinquefasciatus] gi|108868209|gb|EAT32460.1| AAEL015271-PA [Aedes aegypti] gi|167875546|gb|EDS38929.1| cell division control protein 42 [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust.
Identities = 175/195 (89%), Positives = 188/195 (96%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
M+SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP VDG+ VSLGLWD
Sbjct: 1 MASGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGVQVSLGLWD 60
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDYDRLRPLSYPQTDVFLIC+SV SPSSF+NVTSKWYPE+KHHCPDAPIILVGTKI
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLICFSVASPSSFENVTSKWYPEIKHHCPDAPIILVGTKI 120
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLREDRETL+ L+EQ LS +KREQGQKLANK+RAVKYMECSALTQRGL+QVFDEAVRAVL
Sbjct: 121 DLREDRETLSALAEQGLSALKREQGQKLANKVRAVKYMECSALTQRGLKQVFDEAVRAVL 180
Query: 181 RPEPVKRRQRKCVII 195
RPEP+KRRQRKCV++
Sbjct: 181 RPEPLKRRQRKCVVM 195
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357627629|gb|EHJ77267.1| putative rac gtpase [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/195 (90%), Positives = 188/195 (96%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP VDG+ VSLGLWD
Sbjct: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGVAVSLGLWD 60
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDYDRLRPLSYPQTDVFLIC+SV SPSS++NVTSKWYPE+KHHCPDAPIILVGTKI
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPDAPIILVGTKI 120
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLR+DRETL+LLSEQ +SP+KREQGQKLANKIRAVKYMECSALTQRGL+QVFDEAVRAVL
Sbjct: 121 DLRDDRETLSLLSEQGMSPLKREQGQKLANKIRAVKYMECSALTQRGLKQVFDEAVRAVL 180
Query: 181 RPEPVKRRQRKCVII 195
RPEP KR QRKC+I+
Sbjct: 181 RPEPQKRHQRKCLIM 195
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|66560175|ref|XP_624520.1| PREDICTED: ras-related C3 botulinum toxin substrate 1 isoform 2 [Apis mellifera] gi|340713317|ref|XP_003395191.1| PREDICTED: ras-related C3 botulinum toxin substrate 1-like [Bombus terrestris] gi|350404938|ref|XP_003487266.1| PREDICTED: ras-related C3 botulinum toxin substrate 1-like [Bombus impatiens] gi|380011110|ref|XP_003689655.1| PREDICTED: ras-related C3 botulinum toxin substrate 1-like [Apis florea] gi|383855046|ref|XP_003703030.1| PREDICTED: ras-related C3 botulinum toxin substrate 1-like [Megachile rotundata] gi|307170884|gb|EFN62995.1| Ras-related C3 botulinum toxin substrate 1 [Camponotus floridanus] gi|307203725|gb|EFN82685.1| Ras-related C3 botulinum toxin substrate 1 [Harpegnathos saltator] gi|332025004|gb|EGI65191.1| Ras-related C3 botulinum toxin substrate 1 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust.
Identities = 175/195 (89%), Positives = 187/195 (95%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP VDGIPVSLGLWD
Sbjct: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGIPVSLGLWD 60
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDYDRLRPLSYPQTDVFLIC+SV SPSSF+NVTSKWYPE+KHHCPDAP+ILVGTKI
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLICFSVTSPSSFENVTSKWYPEIKHHCPDAPMILVGTKI 120
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLR+DRETL L+EQ LS +KREQGQKLANKIRAVKYMECSALTQRGL+QVFDEAVRAVL
Sbjct: 121 DLRDDRETLTALAEQGLSAIKREQGQKLANKIRAVKYMECSALTQRGLKQVFDEAVRAVL 180
Query: 181 RPEPVKRRQRKCVII 195
RPEP KRRQR+C+++
Sbjct: 181 RPEPQKRRQRRCIML 195
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345487497|ref|XP_001600183.2| PREDICTED: ras-related C3 botulinum toxin substrate 1 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/195 (89%), Positives = 187/195 (95%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP VDGIPVSLGLWD
Sbjct: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGIPVSLGLWD 60
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDYDRLRPLSYPQTDVFLIC+SV SPSSF+NVTSKWYPE+KHHCPDAP+ILVGTKI
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLICFSVTSPSSFENVTSKWYPEIKHHCPDAPMILVGTKI 120
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLR+DRETL L+EQ LS +KREQGQKLANKIRAVKYMECSALTQRGL+QVFDEAVR+VL
Sbjct: 121 DLRDDRETLTALAEQGLSAIKREQGQKLANKIRAVKYMECSALTQRGLKQVFDEAVRSVL 180
Query: 181 RPEPVKRRQRKCVII 195
RPEP KRRQR+C+++
Sbjct: 181 RPEPQKRRQRRCIVM 195
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91077046|ref|XP_968112.1| PREDICTED: similar to rac gtpase [Tribolium castaneum] gi|270002813|gb|EEZ99260.1| Mig-2-like protein [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/195 (89%), Positives = 187/195 (95%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP VDGI VSLGLWD
Sbjct: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGISVSLGLWD 60
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDYDRLRPLSYPQTDVFLIC+SV SPSSF+NVTSKWYPE+KHHCPDAP+ILVGTKI
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLICFSVASPSSFENVTSKWYPEIKHHCPDAPMILVGTKI 120
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLR+DRETL L++Q LSP+KREQGQKLANKIRAVKYMECSALTQRGL+QVFDEAVRAVL
Sbjct: 121 DLRDDRETLTALADQGLSPIKREQGQKLANKIRAVKYMECSALTQRGLKQVFDEAVRAVL 180
Query: 181 RPEPVKRRQRKCVII 195
RPEP KRRQRKC+++
Sbjct: 181 RPEPQKRRQRKCLLM 195
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242015398|ref|XP_002428346.1| RAC GTPase, putative [Pediculus humanus corporis] gi|212512942|gb|EEB15608.1| RAC GTPase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/191 (91%), Positives = 185/191 (96%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP VDGIPVSLGLWD
Sbjct: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGIPVSLGLWD 60
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDYDRLRPLSYPQTDVFLIC+SV SPSSF+NVTSKWYPE+KHHCPDAP+ILVGTK+
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLICFSVTSPSSFENVTSKWYPEIKHHCPDAPMILVGTKM 120
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLREDRETL +L+EQ LSP+KREQGQKLANK+RAVKYMECSALTQRGL+QVFDEAVRAVL
Sbjct: 121 DLREDRETLTVLAEQGLSPIKREQGQKLANKVRAVKYMECSALTQRGLKQVFDEAVRAVL 180
Query: 181 RPEPVKRRQRK 191
RPEP+K RQRK
Sbjct: 181 RPEPIKHRQRK 191
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|125773267|ref|XP_001357892.1| GA18989 [Drosophila pseudoobscura pseudoobscura] gi|195158343|ref|XP_002020051.1| GL13704 [Drosophila persimilis] gi|54637626|gb|EAL27028.1| GA18989 [Drosophila pseudoobscura pseudoobscura] gi|194116820|gb|EDW38863.1| GL13704 [Drosophila persimilis] | Back alignment and taxonomy information |
|---|
Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/195 (89%), Positives = 188/195 (96%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
MS+GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP VD I VSLGLWD
Sbjct: 1 MSTGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMQVDTIQVSLGLWD 60
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDYDRLRPLSYPQTDVFLICYSV SPSSF+NVTSKWYPE+KHHCPDAPIILVGTKI
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEIKHHCPDAPIILVGTKI 120
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLREDRETL+ L+EQ L+P+KREQGQKLANKIRAVKYMECSALTQRGL+QVF+EAVRAVL
Sbjct: 121 DLREDRETLSGLAEQGLTPLKREQGQKLANKIRAVKYMECSALTQRGLKQVFEEAVRAVL 180
Query: 181 RPEPVKRRQRKCVII 195
RPEP+KRRQRKC+++
Sbjct: 181 RPEPLKRRQRKCLVM 195
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328781558|ref|XP_003249996.1| PREDICTED: ras-related C3 botulinum toxin substrate 1 isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/193 (89%), Positives = 185/193 (95%)
Query: 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTA 62
SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP VDGIPVSLGLWDTA
Sbjct: 8 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGIPVSLGLWDTA 67
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDL 122
GQEDYDRLRPLSYPQTDVFLIC+SV SPSSF+NVTSKWYPE+KHHCPDAP+ILVGTKIDL
Sbjct: 68 GQEDYDRLRPLSYPQTDVFLICFSVTSPSSFENVTSKWYPEIKHHCPDAPMILVGTKIDL 127
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
R+DRETL L+EQ LS +KREQGQKLANKIRAVKYMECSALTQRGL+QVFDEAVRAVLRP
Sbjct: 128 RDDRETLTALAEQGLSAIKREQGQKLANKIRAVKYMECSALTQRGLKQVFDEAVRAVLRP 187
Query: 183 EPVKRRQRKCVII 195
EP KRRQR+C+++
Sbjct: 188 EPQKRRQRRCIML 200
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195053740|ref|XP_001993784.1| GH19274 [Drosophila grimshawi] gi|195113617|ref|XP_002001364.1| GI22015 [Drosophila mojavensis] gi|193895654|gb|EDV94520.1| GH19274 [Drosophila grimshawi] gi|193917958|gb|EDW16825.1| GI22015 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/195 (89%), Positives = 188/195 (96%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
MS+GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP VD I VSLGLWD
Sbjct: 1 MSTGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMQVDTIQVSLGLWD 60
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDYDRLRPLSYPQTDVFLICYSV SPSSF+NVTSKWYPE+KHHCPDAPIILVGTKI
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEIKHHCPDAPIILVGTKI 120
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLR+DRETL+ L+EQ L+P+KREQGQKLANKIRAVKYMECSALTQRGL+QVF+EAVRAVL
Sbjct: 121 DLRDDRETLSGLAEQGLTPLKREQGQKLANKIRAVKYMECSALTQRGLKQVFEEAVRAVL 180
Query: 181 RPEPVKRRQRKCVII 195
RPEP+KRRQRKC+++
Sbjct: 181 RPEPLKRRQRKCLVM 195
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 195 | ||||||
| FB|FBgn0039532 | 195 | Mtl "Mig-2-like" [Drosophila m | 1.0 | 1.0 | 0.892 | 2.1e-93 | |
| UNIPROTKB|P62998 | 192 | RAC1 "Ras-related C3 botulinum | 0.969 | 0.984 | 0.724 | 9e-77 | |
| UNIPROTKB|P62999 | 192 | RAC1 "Ras-related C3 botulinum | 0.969 | 0.984 | 0.724 | 9e-77 | |
| UNIPROTKB|P63000 | 192 | RAC1 "Ras-related C3 botulinum | 0.969 | 0.984 | 0.724 | 9e-77 | |
| MGI|MGI:97845 | 192 | Rac1 "RAS-related C3 botulinum | 0.969 | 0.984 | 0.724 | 9e-77 | |
| RGD|619755 | 192 | Rac1 "ras-related C3 botulinum | 0.969 | 0.984 | 0.724 | 9e-77 | |
| ZFIN|ZDB-GENE-030131-5415 | 192 | rac1 "ras-related C3 botulinum | 0.969 | 0.984 | 0.724 | 9e-77 | |
| ZFIN|ZDB-GENE-040718-256 | 192 | rac3a "ras-related C3 botulinu | 0.964 | 0.979 | 0.718 | 1.7e-75 | |
| UNIPROTKB|F1P7Q4 | 189 | RAC1 "Ras-related C3 botulinum | 0.953 | 0.984 | 0.731 | 2.1e-75 | |
| ZFIN|ZDB-GENE-060312-45 | 192 | zgc:136799 "zgc:136799" [Danio | 0.969 | 0.984 | 0.719 | 2.1e-75 |
| FB|FBgn0039532 Mtl "Mig-2-like" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 174/195 (89%), Positives = 186/195 (95%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
MS+GRPIKCVVVGDGTVGKTCMLISYTTD FPGEYVPTVFDNYSAP VD I VSLGLWD
Sbjct: 1 MSTGRPIKCVVVGDGTVGKTCMLISYTTDCFPGEYVPTVFDNYSAPMQVDTIQVSLGLWD 60
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDYDRLRPLSYPQTDVFLICYSV SPSSF+NVTSKWYPE+KHHCPDAPIILVGTKI
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEIKHHCPDAPIILVGTKI 120
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLREDRETL+ L+EQ L+P+KREQGQKLANKIRAVKYMECSALTQRGL+ VF+EAVRAVL
Sbjct: 121 DLREDRETLSGLAEQGLTPLKREQGQKLANKIRAVKYMECSALTQRGLKPVFEEAVRAVL 180
Query: 181 RPEPVKRRQRKCVII 195
RPEP+KRRQRKC+I+
Sbjct: 181 RPEPLKRRQRKCLIM 195
|
|
| UNIPROTKB|P62998 RAC1 "Ras-related C3 botulinum toxin substrate 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 137/189 (72%), Positives = 168/189 (88%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 RRQRKCVII 195
+R+RKC+++
Sbjct: 184 KRKRKCLLL 192
|
|
| UNIPROTKB|P62999 RAC1 "Ras-related C3 botulinum toxin substrate 1" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 137/189 (72%), Positives = 168/189 (88%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 RRQRKCVII 195
+R+RKC+++
Sbjct: 184 KRKRKCLLL 192
|
|
| UNIPROTKB|P63000 RAC1 "Ras-related C3 botulinum toxin substrate 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 137/189 (72%), Positives = 168/189 (88%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 RRQRKCVII 195
+R+RKC+++
Sbjct: 184 KRKRKCLLL 192
|
|
| MGI|MGI:97845 Rac1 "RAS-related C3 botulinum substrate 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 137/189 (72%), Positives = 168/189 (88%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 RRQRKCVII 195
+R+RKC+++
Sbjct: 184 KRKRKCLLL 192
|
|
| RGD|619755 Rac1 "ras-related C3 botulinum toxin substrate 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 137/189 (72%), Positives = 168/189 (88%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 RRQRKCVII 195
+R+RKC+++
Sbjct: 184 KRKRKCLLL 192
|
|
| ZFIN|ZDB-GENE-030131-5415 rac1 "ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 137/189 (72%), Positives = 168/189 (88%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 RRQRKCVII 195
RR+R+C+++
Sbjct: 184 RRRRRCLLL 192
|
|
| ZFIN|ZDB-GENE-040718-256 rac3a "ras-related C3 botulinum toxin substrate 3a (rho family, small GTP binding protein Rac3)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 135/188 (71%), Positives = 165/188 (87%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L ++ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIERLRDKKLAPITYPQGLAMAREIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 RRQRKCVI 194
+R +KC +
Sbjct: 184 KRGKKCTV 191
|
|
| UNIPROTKB|F1P7Q4 RAC1 "Ras-related C3 botulinum toxin substrate 1" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 136/186 (73%), Positives = 164/186 (88%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVV DG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 4 IKCVVVEDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 RRQRKC 192
+R+RKC
Sbjct: 184 KRKRKC 189
|
|
| ZFIN|ZDB-GENE-060312-45 zgc:136799 "zgc:136799" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 136/189 (71%), Positives = 165/189 (87%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHC PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCQTTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 RRQRKCVII 195
+R+RKC ++
Sbjct: 184 KRKRKCSLL 192
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P34144 | RAC1A_DICDI | No assigned EC number | 0.6827 | 0.9487 | 0.9536 | yes | N/A |
| P34145 | RAC1B_DICDI | No assigned EC number | 0.6683 | 0.9794 | 0.9845 | no | N/A |
| P34146 | RAC1C_DICDI | No assigned EC number | 0.6844 | 0.9538 | 0.9637 | no | N/A |
| Q6RUV5 | RAC1_RAT | No assigned EC number | 0.7248 | 0.9692 | 0.9843 | yes | N/A |
| P17081 | RHOQ_HUMAN | No assigned EC number | 0.6141 | 0.9435 | 0.8975 | no | N/A |
| Q9TU25 | RAC2_BOVIN | No assigned EC number | 0.6931 | 0.9692 | 0.9843 | no | N/A |
| P34148 | RACB_DICDI | No assigned EC number | 0.6391 | 0.9794 | 0.9794 | no | N/A |
| P34149 | RACC_DICDI | No assigned EC number | 0.5487 | 0.9846 | 1.0 | no | N/A |
| Q24817 | RACD_ENTHI | No assigned EC number | 0.5888 | 0.9230 | 0.9090 | N/A | N/A |
| Q2KJ93 | CDC42_BOVIN | No assigned EC number | 0.6402 | 0.9641 | 0.9842 | no | N/A |
| C4YDI6 | CDC42_CANAW | No assigned EC number | 0.6560 | 0.9641 | 0.9842 | N/A | N/A |
| Q9HF56 | CDC42_ASHGO | No assigned EC number | 0.6349 | 0.9641 | 0.9842 | yes | N/A |
| Q01112 | CDC42_SCHPO | No assigned EC number | 0.6084 | 0.9692 | 0.9843 | yes | N/A |
| Q16YG0 | CDC42_AEDAE | No assigned EC number | 0.6612 | 0.9487 | 0.9685 | N/A | N/A |
| P40792 | RAC1_DROME | No assigned EC number | 0.6649 | 0.9794 | 0.9947 | no | N/A |
| P40793 | CDC42_DROME | No assigned EC number | 0.6612 | 0.9487 | 0.9685 | no | N/A |
| P62998 | RAC1_BOVIN | No assigned EC number | 0.7248 | 0.9692 | 0.9843 | yes | N/A |
| P62999 | RAC1_CANFA | No assigned EC number | 0.7248 | 0.9692 | 0.9843 | yes | N/A |
| Q94124 | RAC2_CAEEL | No assigned EC number | 0.6516 | 0.9128 | 0.9128 | no | N/A |
| P19073 | CDC42_YEAST | No assigned EC number | 0.6243 | 0.9641 | 0.9842 | yes | N/A |
| Q007T2 | CDC42_PIG | No assigned EC number | 0.6402 | 0.9641 | 0.9842 | no | N/A |
| O76321 | RECG_ENTHI | No assigned EC number | 0.6590 | 0.9025 | 0.8844 | N/A | N/A |
| Q17031 | CDC42_ANOGA | No assigned EC number | 0.6630 | 0.9384 | 0.9581 | no | N/A |
| P60763 | RAC3_HUMAN | No assigned EC number | 0.7159 | 0.9025 | 0.9166 | no | N/A |
| P60764 | RAC3_MOUSE | No assigned EC number | 0.7159 | 0.9025 | 0.9166 | no | N/A |
| Q8CFN2 | CDC42_RAT | No assigned EC number | 0.6402 | 0.9641 | 0.9842 | no | N/A |
| P60766 | CDC42_MOUSE | No assigned EC number | 0.6402 | 0.9641 | 0.9842 | no | N/A |
| Q24814 | RACA_ENTHI | No assigned EC number | 0.6684 | 0.9589 | 0.9540 | N/A | N/A |
| Q24815 | RACB_ENTHI | No assigned EC number | 0.6441 | 0.8358 | 1.0 | N/A | N/A |
| Q05144 | RAC2_MOUSE | No assigned EC number | 0.6878 | 0.9692 | 0.9843 | no | N/A |
| O96390 | RACF1_DICDI | No assigned EC number | 0.6327 | 0.9025 | 0.9119 | no | N/A |
| P60952 | CDC42_CANFA | No assigned EC number | 0.6402 | 0.9641 | 0.9842 | no | N/A |
| P60953 | CDC42_HUMAN | No assigned EC number | 0.6402 | 0.9641 | 0.9842 | no | N/A |
| P15153 | RAC2_HUMAN | No assigned EC number | 0.6806 | 0.9794 | 0.9947 | no | N/A |
| O88931 | RAC2_CAVPO | No assigned EC number | 0.6825 | 0.9692 | 0.9843 | no | N/A |
| Q8R527 | RHOQ_MOUSE | No assigned EC number | 0.6195 | 0.9435 | 0.8975 | no | N/A |
| Q90694 | CDC42_CHICK | No assigned EC number | 0.6402 | 0.9641 | 0.9842 | no | N/A |
| P48554 | RAC2_DROME | No assigned EC number | 0.6544 | 0.9794 | 0.9947 | no | N/A |
| Q05062 | CDC42_CAEEL | No assigned EC number | 0.6243 | 0.9641 | 0.9842 | no | N/A |
| Q03206 | RAC1_CAEEL | No assigned EC number | 0.6984 | 0.9641 | 0.9842 | yes | N/A |
| P84097 | RHOG_CRICR | No assigned EC number | 0.6455 | 0.9641 | 0.9842 | N/A | N/A |
| P84096 | RHOG_MOUSE | No assigned EC number | 0.6455 | 0.9641 | 0.9842 | no | N/A |
| P84095 | RHOG_HUMAN | No assigned EC number | 0.6455 | 0.9641 | 0.9842 | no | N/A |
| Q4R4R6 | CDC42_MACFA | No assigned EC number | 0.6349 | 0.9641 | 0.9842 | N/A | N/A |
| P63001 | RAC1_MOUSE | No assigned EC number | 0.7248 | 0.9692 | 0.9843 | yes | N/A |
| P63000 | RAC1_HUMAN | No assigned EC number | 0.7248 | 0.9692 | 0.9843 | yes | N/A |
| Q9GPS3 | RACF2_DICDI | No assigned EC number | 0.6379 | 0.8871 | 0.8963 | no | N/A |
| Q29HY3 | CDC42_DROPS | No assigned EC number | 0.6612 | 0.9487 | 0.9685 | no | N/A |
| Q9JJL4 | RHOQ_RAT | No assigned EC number | 0.6195 | 0.9435 | 0.8975 | no | N/A |
| P0CY33 | CDC42_CANAL | No assigned EC number | 0.6560 | 0.9641 | 0.9842 | N/A | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 195 | |||
| smart00174 | 174 | smart00174, RHO, Rho (Ras homology) subfamily of R | 1e-124 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 1e-121 | |
| cd01871 | 174 | cd01871, Rac1_like, Ras-related C3 botulinum toxin | 1e-115 | |
| cd01875 | 191 | cd01875, RhoG, Ras homolog family, member G (RhoG) | 1e-103 | |
| cd01874 | 175 | cd01874, Cdc42, cell division cycle 42 (Cdc42) is | 2e-97 | |
| cd04132 | 197 | cd04132, Rho4_like, Ras homology family 4 (Rho4) o | 1e-95 | |
| cd04130 | 173 | cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W | 8e-88 | |
| cd01870 | 175 | cd01870, RhoA_like, Ras homology family A (RhoA)-l | 4e-84 | |
| cd04135 | 174 | cd04135, Tc10, Rho GTPase TC10 (Tc10) | 1e-80 | |
| cd04133 | 173 | cd04133, Rop_like, Rho-related protein from plants | 4e-77 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 1e-74 | |
| cd04129 | 190 | cd04129, Rho2, Ras homology family 2 (Rho2) of sma | 1e-67 | |
| cd04131 | 176 | cd04131, Rnd, Rho family GTPase subfamily Rnd incl | 2e-65 | |
| cd04134 | 185 | cd04134, Rho3, Ras homology family 3 (Rho3) of sma | 3e-61 | |
| cd04173 | 221 | cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases | 9e-56 | |
| cd04172 | 182 | cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | 2e-52 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 2e-49 | |
| cd04174 | 232 | cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | 2e-45 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 5e-43 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 3e-42 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 2e-41 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 1e-40 | |
| cd01873 | 195 | cd01873, RhoBTB, RhoBTB protein is an atypical mem | 3e-38 | |
| smart00173 | 164 | smart00173, RAS, Ras subfamily of RAS small GTPase | 9e-34 | |
| smart00010 | 166 | smart00010, small_GTPase, Small GTPase of the Ras | 1e-33 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 6e-33 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 3e-32 | |
| cd04145 | 164 | cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | 9e-31 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 2e-27 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 3e-27 | |
| cd04144 | 190 | cd04144, Ras2, Rat sarcoma (Ras) family 2 of small | 4e-27 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 3e-26 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 4e-26 | |
| cd01893 | 168 | cd01893, Miro1, Mitochondrial Rho family 1 (Miro1) | 4e-26 | |
| cd04146 | 166 | cd04146, RERG_RasL11_like, Ras-related and Estroge | 1e-25 | |
| cd04138 | 162 | cd04138, H_N_K_Ras_like, Ras GTPase family contain | 3e-25 | |
| cd04137 | 180 | cd04137, RheB, Ras Homolog Enriched in Brain (RheB | 4e-25 | |
| cd01862 | 172 | cd01862, Rab7, Rab GTPase family 7 (Rab7) | 7e-25 | |
| cd04139 | 163 | cd04139, RalA_RalB, Ral (Ras-like) family containi | 1e-24 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 2e-24 | |
| PTZ00369 | 189 | PTZ00369, PTZ00369, Ras-like protein; Provisional | 3e-24 | |
| cd04136 | 164 | cd04136, Rap_like, Rap-like family consists of Rap | 9e-24 | |
| cd04141 | 172 | cd04141, Rit_Rin_Ric, Ras-like protein in all tiss | 5e-23 | |
| cd04175 | 164 | cd04175, Rap1, Rap1 family GTPase consists of Rap1 | 6e-23 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 8e-23 | |
| cd04177 | 168 | cd04177, RSR1, RSR1/Bud1p family GTPase | 9e-23 | |
| cd04106 | 162 | cd04106, Rab23_like, Rab GTPase family 23 (Rab23)- | 6e-22 | |
| cd04176 | 163 | cd04176, Rap2, Rap2 family GTPase consists of Rap2 | 6e-22 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 1e-21 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 3e-21 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 9e-21 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 9e-21 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 1e-20 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 2e-20 | |
| PLN03108 | 210 | PLN03108, PLN03108, Rab family protein; Provisiona | 6e-20 | |
| cd01866 | 168 | cd01866, Rab2, Rab GTPase family 2 (Rab2) | 8e-20 | |
| cd04101 | 167 | cd04101, RabL4, Rab GTPase-like family 4 (Rab-like | 1e-19 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 1e-19 | |
| PLN03071 | 219 | PLN03071, PLN03071, GTP-binding nuclear protein Ra | 3e-19 | |
| cd04118 | 193 | cd04118, Rab24, Rab GTPase family 24 (Rab24) | 3e-19 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 3e-19 | |
| cd04116 | 170 | cd04116, Rab9, Rab GTPase family 9 (Rab9) | 4e-19 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 5e-19 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 9e-19 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 4e-18 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 7e-18 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 1e-17 | |
| cd04124 | 161 | cd04124, RabL2, Rab GTPase-like family 2 (Rab-like | 4e-17 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 1e-16 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 1e-16 | |
| cd04148 | 219 | cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam | 2e-16 | |
| cd04147 | 197 | cd04147, Ras_dva, Ras - dorsal-ventral anterior lo | 4e-16 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 6e-16 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 8e-16 | |
| cd04120 | 202 | cd04120, Rab12, Rab GTPase family 12 (Rab12) | 9e-16 | |
| cd04107 | 201 | cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1 | 1e-15 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 2e-15 | |
| smart00176 | 200 | smart00176, RAN, Ran (Ras-related nuclear proteins | 2e-15 | |
| cd04140 | 165 | cd04140, ARHI_like, A Ras homolog member I (ARHI) | 2e-14 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 3e-14 | |
| cd04128 | 182 | cd04128, Spg1, Septum-promoting GTPase (Spg1) | 9e-14 | |
| cd04121 | 189 | cd04121, Rab40, Rab GTPase family 40 (Rab40) conta | 1e-12 | |
| cd04143 | 247 | cd04143, Rhes_like, Ras homolog enriched in striat | 2e-12 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 3e-12 | |
| PTZ00099 | 176 | PTZ00099, PTZ00099, rab6; Provisional | 5e-11 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 1e-08 | |
| cd04142 | 198 | cd04142, RRP22, Ras-related protein on chromosome | 2e-07 | |
| cd04103 | 158 | cd04103, Centaurin_gamma, Centaurin gamma (CENTG) | 3e-05 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 6e-05 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 7e-04 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 7e-04 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 0.001 |
| >gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Score = 346 bits (891), Expect = e-124
Identities = 123/174 (70%), Positives = 143/174 (82%)
Query: 9 CVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD 68
VVVGDG VGKTC+LI YTT++FP +YVPTVF+NYSA VDG PV LGLWDTAGQEDYD
Sbjct: 1 LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD 60
Query: 69 RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRET 128
RLRPLSYP TDVFLIC+SV SP+SF+NV KWYPE+KH CP+ PIILVGTK+DLR D+ T
Sbjct: 61 RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDKST 120
Query: 129 LNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
L LS++ PV EQGQ LA +I AVKY+ECSALTQ G+R+VF+EA+RA L
Sbjct: 121 LEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAALNK 174
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 339 bits (871), Expect = e-121
Identities = 128/172 (74%), Positives = 148/172 (86%), Gaps = 1/172 (0%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IK VVVGDG VGKTC+LISYTT+ FP EYVPTVFDNYSA TVDG V+LGLWDTAGQE+
Sbjct: 1 IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEE 60
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+SV SPSSF+NV +KWYPE+KH+CP+ PIILVGTKIDLR+D
Sbjct: 61 YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRDDG 120
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178
TL L E+ P+ E+G+KLA +I AVKYMECSALTQ GL++VFDEA+RA
Sbjct: 121 NTLKKL-EKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIRA 171
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3 | Back alignment and domain information |
|---|
Score = 324 bits (833), Expect = e-115
Identities = 128/173 (73%), Positives = 154/173 (89%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 61
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 62 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 121
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAV
Sbjct: 122 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 174
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174 |
| >gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 293 bits (752), Expect = e-103
Identities = 123/189 (65%), Positives = 151/189 (79%), Gaps = 1/189 (0%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LI YTT++FP EY+PTVFDNYSA VDG VSL LWDTAGQE+
Sbjct: 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLR LSYPQT+VF+IC+S+ SPSS++NV KW+PE+ HHCP+ PI+LVGTK DLR D
Sbjct: 64 YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+TL L EQ +P+ +QG LA +I AVKY+ECSAL Q G+++VF EAVRAVL P P+K
Sbjct: 124 DTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPIK 183
Query: 187 RRQRKCVII 195
+ CV++
Sbjct: 184 DT-KSCVLL 191
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191 |
| >gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family | Back alignment and domain information |
|---|
Score = 279 bits (715), Expect = 2e-97
Identities = 117/174 (67%), Positives = 141/174 (81%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DTAGQED
Sbjct: 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 61
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+D
Sbjct: 62 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 121
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
T+ L++ P+ E G+KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L
Sbjct: 122 STIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 175
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175 |
| >gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like | Back alignment and domain information |
|---|
Score = 275 bits (706), Expect = 1e-95
Identities = 105/196 (53%), Positives = 131/196 (66%), Gaps = 5/196 (2%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTV-DGIPVSLGLWDTAG 63
+K VVVGDG GKTC+L+ Y SFP EYVPTVF+NY V +G + L LWDTAG
Sbjct: 2 LKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAG 61
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123
QEDYDRLRPLSYP DV LICYSV +P+S DNV KWYPE+ H CP PI+LVG K DLR
Sbjct: 62 QEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDLR 121
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183
+D+ +++ L Q L PV EQG+ +A I AV Y+ECSA + +VFD A+ L
Sbjct: 122 KDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVALSKS 181
Query: 184 PV----KRRQRKCVII 195
K++++KCVI+
Sbjct: 182 GRAARKKKKKKKCVIL 197
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197 |
| >gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42 | Back alignment and domain information |
|---|
Score = 255 bits (653), Expect = 8e-88
Identities = 99/172 (57%), Positives = 129/172 (75%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
+KCV+VGDG VGKT +++SYTT+ +P EYVPT FDN+S VDG PV L L DTAGQ++
Sbjct: 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE 60
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
+D+LRPL YP TDVFL+C+SVV+PSSF N++ KW PE++ H P APIILVGT+ DLR D
Sbjct: 61 FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDV 120
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178
L L+ PV + + + LA KI A +Y+ECSALTQ+ L++VFD A+ A
Sbjct: 121 NVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAILA 172
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 4e-84
Identities = 102/173 (58%), Positives = 125/173 (72%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGDG GKTC+LI ++ D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 3 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 62
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR D
Sbjct: 63 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 122
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
T+ L++ PVK E+G+ +A KI A Y+ECSA T+ G+R+VF+ A RA L
Sbjct: 123 TIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMATRAAL 175
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175 |
| >gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10) | Back alignment and domain information |
|---|
Score = 237 bits (605), Expect = 1e-80
Identities = 111/174 (63%), Positives = 138/174 (79%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
+KCVVVGDG VGKTC+L+SY D+FP EYVPTVFD+Y+ TV G LGL+DTAGQED
Sbjct: 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYP TDVFLIC+SVV+P+SF NV +W PELK + P+ P +L+GT+IDLR+D
Sbjct: 61 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQIDLRDDP 120
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
+TL L++ P+ EQGQKLA +I A Y+ECSALTQ+GL+ VFDEA+ A+L
Sbjct: 121 KTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174 |
| >gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like | Back alignment and domain information |
|---|
Score = 228 bits (582), Expect = 4e-77
Identities = 99/174 (56%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCV VGDG VGKTCMLISYT+++FP +YVPTVFDN+SA VDG V+LGLWDTAGQED
Sbjct: 2 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQED 61
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
Y+RLRPLSY DVFL+ +S++S +S++NV KW PEL+H+ P PI+LVGTK+DLR+D+
Sbjct: 62 YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLDLRDDK 121
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
+ P+ QG++L +I A Y+ECS+ TQ+ ++ VFD A++ VL
Sbjct: 122 QF--FADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 221 bits (566), Expect = 1e-74
Identities = 72/176 (40%), Positives = 100/176 (56%), Gaps = 16/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V+VGDG VGK+ +LI +T + FP EY+PT+ D Y+ VDG V L +WDTAGQE
Sbjct: 1 KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKIDLRED 125
+ LRPL Y FL+ Y + S SF+NV KW E+ H + PI+LVG K DL +
Sbjct: 61 FRALRPLYYRGAQGFLLVYDITSRDSFENVK-KWLEEILRHADENVPIVLVGNKCDLEDQ 119
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R V E+G+ LA ++ + +ME SA T + + F+E R +L+
Sbjct: 120 R------------VVSTEEGEALAKEL-GLPFMETSAKTNENVEEAFEELAREILK 162
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 1e-67
Identities = 89/190 (46%), Positives = 116/190 (61%), Gaps = 4/190 (2%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGDG GKT +L +T FP EY PTVF+NY VDG PV L LWDTAGQE+Y
Sbjct: 3 KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
+RLRPLSY + V LI +++ +P S +NV +KW E++ +CP+ P+ILVG K DLR++
Sbjct: 63 ERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQEAV 122
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL--RPEPV 185
+ V +Q + +A I A KYMECSALT G+ VF+ A RA L R
Sbjct: 123 AKGNYATDEF--VPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATRAALLVRKSGK 180
Query: 186 KRRQRKCVII 195
+ C II
Sbjct: 181 EEPGANCCII 190
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190 |
| >gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8 | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 2e-65
Identities = 85/175 (48%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V+VGD GKT +L + DSFP YVPTVF+NY+A F VD + L LWDT+G
Sbjct: 2 CKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSPY 61
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YD +RPLSYP +D LIC+ + P + D+V KW E++ CP+ P++LVG K DLR D
Sbjct: 62 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRTDL 121
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT-QRGLRQVFDEAVRAVL 180
TL LS + PV EQG+ LA +I A Y+ECSA T + +R VF+ A A L
Sbjct: 122 STLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMATLACL 176
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176 |
| >gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 3e-61
Identities = 86/187 (45%), Positives = 112/187 (59%), Gaps = 4/187 (2%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VV+GDG GKT +L +T FP Y PTVF+NY VDG+ V L LWDTAGQE++
Sbjct: 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLR LSY T V ++C+SV +P S +NV SKW E++HHCP ++LV K DLRE R
Sbjct: 62 DRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLREPRN 121
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKR 187
+ + + E+G +A +I A +Y+ECSA RG+ + F EA R L P
Sbjct: 122 ERDRGTHT----ISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVALNARPPHP 177
Query: 188 RQRKCVI 194
R C I
Sbjct: 178 HSRACTI 184
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185 |
| >gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 9e-56
Identities = 80/178 (44%), Positives = 113/178 (63%), Gaps = 1/178 (0%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VVVGD GKT +L + D++P YVPTVF+NY+A F +D + L +WDT+G Y
Sbjct: 3 KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSYY 62
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
D +RPL+YP +D LIC+ + P + D+V KW E + CP+A ++LVG K+D+R D
Sbjct: 63 DNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDLS 122
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA-LTQRGLRQVFDEAVRAVLRPEP 184
TL LS+Q L PV EQG LA ++ AV Y+ECS+ +++ +R VF A +R E
Sbjct: 123 TLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVRREH 180
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221 |
| >gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 2e-52
Identities = 79/172 (45%), Positives = 106/172 (61%), Gaps = 1/172 (0%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VVVGD GKT +L + D FP YVPTVF+NY+A F +D + L LWDT+G Y
Sbjct: 7 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
D +RPLSYP +D LIC+ + P + D+V KW E++ CP+ ++LVG K DLR D
Sbjct: 67 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 126
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL-TQRGLRQVFDEAVRA 178
TL LS +PV +QG +A +I A Y+ECSAL ++ +R +F A A
Sbjct: 127 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 178
|
Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 2e-49
Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 20/175 (11%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTAG 63
K V++GD VGKT +L+ + + F Y T+ F + + VDG V L +WDTAG
Sbjct: 1 FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKT--IEVDGKKVKLQIWDTAG 58
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP-DAPIILVGTKIDL 122
QE + + Y ++ Y V + SF+N+ KW ELK + P + PIILVG K DL
Sbjct: 59 QERFRSITSSYYRGAHGAILVYDVTNRESFENL-DKWLNELKEYAPPNIPIILVGNKSDL 117
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177
++R+ V E+ Q+ A + + + E SA T + + F+ R
Sbjct: 118 EDERQ------------VSTEEAQQFAKEN-GLLFFETSAKTGENVDEAFESLAR 159
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 2e-45
Identities = 74/192 (38%), Positives = 105/192 (54%), Gaps = 8/192 (4%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGD GKT ML D +P YVPTVF+NY+A + V L LWDT+G Y
Sbjct: 15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
D +RPL Y +D L+C+ + P FD+ KW E+ +CP I+L+G K DLR D
Sbjct: 75 DNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDLRTDLS 134
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT-QRGLRQVFDEAVRAVL------ 180
TL LS Q +P+ EQG +A ++ A Y+ECSA T ++ + +F A +
Sbjct: 135 TLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKLSPL 194
Query: 181 -RPEPVKRRQRK 191
+ PV+ ++
Sbjct: 195 AKKSPVRSLSKR 206
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 143 bits (361), Expect = 5e-43
Identities = 62/183 (33%), Positives = 89/183 (48%), Gaps = 6/183 (3%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP-FTVDGIPVSLGLWDTAGQE 65
K VV+GDG VGKT +L D FP Y PT+ + A + L LWDTAGQE
Sbjct: 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKIDLRE 124
+Y LRP Y + LI Y S D +T +W EL+ PD PI+LVG KIDL +
Sbjct: 66 EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125
Query: 125 DRETLNLLSEQ--NLSPVKREQGQKLANKIRAVKYMECSA--LTQRGLRQVFDEAVRAVL 180
++ + + Q + + + ++ +E SA LT + ++F E +R +L
Sbjct: 126 EQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185
Query: 181 RPE 183
Sbjct: 186 EEI 188
|
Length = 219 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 3e-42
Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VV+G G VGK+ + I + + F EY PT+ D+Y VDG +L + DTAGQE++
Sbjct: 1 KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEF 60
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDLRED 125
+R D F++ YS+ S SF+ + ++ D PI+LVG K DL +
Sbjct: 61 SAMRDQYIRNGDGFILVYSITSRESFEEI-KNIREQILRVKDKEDVPIVLVGNKCDLENE 119
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177
R+ V E+G+ LA + ++E SA T + ++F+ VR
Sbjct: 120 RQ------------VSTEEGEALAEEWG-CPFLETSAKTNINIDELFNTLVR 158
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 2e-41
Identities = 54/162 (33%), Positives = 70/162 (43%), Gaps = 7/162 (4%)
Query: 6 PIKCVVVGDGTVGKTCMLISYT-TDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAG 63
IK V+VGD VGK+ +L EY P NY + DG L DTAG
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSP-SSFDNVTSKWYPELKHHCP-DAPIILVGTKID 121
QEDYD +R L Y + L + +V + + K E+ HH PIILVG KID
Sbjct: 61 QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKID 120
Query: 122 LR---EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160
LR L ++ N P+ + N A K +E
Sbjct: 121 LRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVEA 162
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 1e-40
Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 16/177 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+ +L +T F +Y T+ D + VDG V L +WDTAGQE
Sbjct: 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ + Y L+ Y + + SF+N+ W EL+ + P+ I+LVG K DL E
Sbjct: 61 RFRSITSSYYRGAVGALLVYDITNRESFENLE-NWLKELREYASPNVVIMLVGNKSDLEE 119
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R+ V RE+ + A + + + E SA T + + F+E R +L+
Sbjct: 120 QRQ------------VSREEAEAFA-EEHGLPFFETSAKTNTNVEEAFEELAREILK 163
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases | Back alignment and domain information |
|---|
Score = 130 bits (327), Expect = 3e-38
Identities = 79/195 (40%), Positives = 113/195 (57%), Gaps = 26/195 (13%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEY------VPTVF--DNY--------SAPFTVD 50
IKCVVVGD VGKT ++ + + +Y VPTV+ D Y + VD
Sbjct: 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62
Query: 51 GIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD 110
G+ VSL LWDT G D+D+ R +Y ++DV L+C+S+ SP+S NV + WYPE++H CP
Sbjct: 63 GVSVSLRLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPR 120
Query: 111 APIILVGTKIDLRE-DRETLNLLSEQNLSPVKR------EQGQKLANKIRAVKYMECSAL 163
P+ILVG K+DLR D + +N P+K E G+ +A ++ + Y E S +
Sbjct: 121 VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKEL-GIPYYETSVV 179
Query: 164 TQRGLRQVFDEAVRA 178
TQ G++ VFD A+RA
Sbjct: 180 TQFGVKDVFDNAIRA 194
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195 |
| >gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 9e-34
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 16/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VV+G G VGK+ + I + F +Y PT+ D+Y +DG L + DTAGQE++
Sbjct: 2 KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 61
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLRED 125
+R + FL+ YS+ SF+ + K+ ++ D PI+LVG K DL +
Sbjct: 62 SAMRDQYMRTGEGFLLVYSITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESE 120
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R V E+G++LA + ++E SA + + + F + VR + +
Sbjct: 121 RV------------VSTEEGKELARQW-GCPFLETSAKERVNVDEAFYDLVREIRK 163
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164 |
| >gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 1e-33
Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VV+G G VGK+ + I + F EY PT+ D+Y +DG L + DTAGQE++
Sbjct: 4 KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 63
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLRED 125
+R + FL+ YS+ SF+ + +K+ ++ D PI+LVG K DL +
Sbjct: 64 SAMRDQYMRTGEGFLLVYSITDRQSFEEI-AKFREQILRVKDRDDVPIVLVGNKCDLENE 122
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
R V E+G++LA + ++E SA + + + F + VR + +
Sbjct: 123 RV------------VSTEEGKELARQW-GCPFLETSAKERINVDEAFYDLVREIRKS 166
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 6e-33
Identities = 64/176 (36%), Positives = 94/176 (53%), Gaps = 18/176 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
+K +++GD VGK+ +L+ +T D+F + T+ D TVDG V L +WDTAGQE
Sbjct: 1 LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLR 123
+ L Y ++ Y V +FDN+ W EL + PDA +LVG KID +
Sbjct: 61 RFRTLTSSYYRGAQGVILVYDVTRRDTFDNL-DTWLNELDTYSTNPDAVKMLVGNKID-K 118
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
E+RE V RE+GQK A K + ++E SA T+ G++Q F+E V +
Sbjct: 119 ENRE------------VTREEGQKFARKHNML-FIETSAKTRIGVQQAFEELVEKI 161
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-32
Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 18/169 (10%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V +GD +VGKT ++ + D+F +Y T+ D S VD V L LWDTAGQE
Sbjct: 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61
Query: 67 YDRLRPLSYPQ-TDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII-LVGTKIDLRE 124
+ L P SY + + V ++ Y + + SFDN KW +++ + II LVG K DL +
Sbjct: 62 FRSLIP-SYIRDSSVAVVVYDITNRQSFDNTD-KWIDDVRDERGNDVIIVLVGNKTDLSD 119
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173
R+ V E+G+K A + ++E SA ++Q+F
Sbjct: 120 KRQ------------VSTEEGEKKAKEN-NAMFIETSAKAGHNVKQLFK 155
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 9e-31
Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 16/174 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VVVG G VGK+ + I + F +Y PT+ D+Y+ +DG L + DTAGQE++
Sbjct: 4 KLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQEEF 63
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLRED 125
+R + FL+ +SV SF+ V K++ ++ + P+ILVG K DL
Sbjct: 64 SAMREQYMRTGEGFLLVFSVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQ 122
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
R+ V RE+GQ+LA +++ + Y+E SA + + + F + VR +
Sbjct: 123 RQ------------VSREEGQELARQLK-IPYIETSAKDRVNVDKAFHDLVRVI 163
|
The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-27
Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 16/169 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDGIPVSLGLWDTAGQE 65
K V++G+G VGKT +++ Y + F ++ T + + + G + L +WDTAGQE
Sbjct: 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKIDLRE 124
Y L P+ Y D ++ Y + SF V KW ELK + +++VG KIDL
Sbjct: 61 RYHALGPIYYRDADGAILVYDITDADSFQKVK-KWIKELKQMRGNNISLVIVGNKIDLER 119
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173
R V + + ++ A + A K+ E SA T +G+ ++F
Sbjct: 120 QRV------------VSKSEAEEYAKSVGA-KHFETSAKTGKGIEELFL 155
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 3e-27
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 24/179 (13%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPF-----TVDGIPVSLGLWDTA 62
K V++GD +VGK+ +++ + + F T+ A F +D V +WDTA
Sbjct: 3 KLVLLGDSSVGKSSIVLRFVKNEFSENQESTI----GAAFLTQTVNLDDTTVKFEIWDTA 58
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKID 121
GQE Y L P+ Y ++ Y + S SF+ S W EL+ H P+ I L G K D
Sbjct: 59 GQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKS-WVKELQEHGPPNIVIALAGNKAD 117
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
L R+ V E+ Q+ A++ + +ME SA T + ++F E R +
Sbjct: 118 LESKRQ------------VSTEEAQEYADENGLL-FMETSAKTGENVNELFTEIARKLP 163
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 4e-27
Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 30/204 (14%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VV+GDG VGKT + I + F Y PT+ D+Y VDG P L + DTAGQE+Y
Sbjct: 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY 60
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL---KHHCP-DAPIILVGTKIDLR 123
LR + + F++ YS+ S S+F+ V ++ ++ K D PI++VG K D
Sbjct: 61 TALRDQWIREGEGFILVYSITSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKV 119
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP- 182
+RE V E+G LA ++ +++E SA T + + F VRA+ +
Sbjct: 120 YERE------------VSTEEGAALARRL-GCEFIEASAKTNVNVERAFYTLVRALRQQR 166
Query: 183 -----------EPVKRRQRKCVII 195
+ ++++RKCVI+
Sbjct: 167 QGGQGPKGGPTKKKEKKKRKCVIM 190
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 3e-26
Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 25/177 (14%)
Query: 10 VVVGDGTVGKTCMLISYTTDSF---PGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
VVVG G VGK+ +L + T D Y + + L DT G +
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVL--VDTPGLD 58
Query: 66 DYDRLRP-----LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
++ L L D+ L+ S ++ K + PIILVG KI
Sbjct: 59 EFGGLGREELARLLLRGADLILLVVDSTDRESEEDA--KLLILRRLRKEGIPIILVGNKI 116
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177
DL E+RE V+ + KI V E SA T G+ ++F++ +
Sbjct: 117 DLLEERE------------VEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 4e-26
Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 22/180 (12%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L+ ++ DSF ++ T+ D +DG + L +WDTAGQE
Sbjct: 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63
Query: 66 DYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKID 121
R R ++ Y ++ Y + SF+N+ W + H D +LVG K D
Sbjct: 64 ---RFRTITTSYYRGAMGIILVYDITDEKSFENI-KNWMRNIDEHASEDVERMLVGNKCD 119
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ E R V +E+G+ LA + +K++E SA + + F + +L+
Sbjct: 120 MEEKRV------------VSKEEGEALAREYG-IKFLETSAKANINVEEAFLTLAKDILK 166
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 4e-26
Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 16/179 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS--APFTVDGIPVSLGLWDTAGQ 64
++ V++GD VGK+ +++S ++ FP E VP V + A T + +P ++ DT+ +
Sbjct: 3 VRIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEITIPADVTPERVPTTI--VDTSSR 59
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
+ +V + YSV PS+ + + +KW P ++ PIILVG K DLR+
Sbjct: 60 PQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 119
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVK-YMECSALTQRGLRQVFDEAVRAVLRP 182
L E+ + P+ E R ++ +ECSA T + +VF A +AVL P
Sbjct: 120 GSSQAGL--EEEMLPIMNE--------FREIETCVECSAKTLINVSEVFYYAQKAVLHP 168
|
Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168 |
| >gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 1e-25
Identities = 62/181 (34%), Positives = 88/181 (48%), Gaps = 22/181 (12%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+G VGK+ + + + T F GEY P + YS T+DG VSL + DT GQ+
Sbjct: 1 KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQN 60
Query: 68 D----RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWY--PELKHHCPDAPIILVGTKID 121
+ R L + D F++ YS+ SSFD V+ E+K + P+ILVG K D
Sbjct: 61 EDPESLERSLRW--ADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKAD 118
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA-LTQRGLRQVFDEAVRAVL 180
L R+ V E+GQKLA ++ + + E SA ++ VF E R V
Sbjct: 119 LLHSRQ------------VSTEEGQKLALELGCLFF-EVSAAENYLEVQNVFHELCREVR 165
Query: 181 R 181
R
Sbjct: 166 R 166
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166 |
| >gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 3e-25
Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 21/176 (11%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VVVG G VGK+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y
Sbjct: 3 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 62
Query: 68 DRLRPLSYPQT-DVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA---PIILVGTKIDLR 123
+R Y +T + FL +++ S SF+++ + Y E D+ P++LVG K DL
Sbjct: 63 SAMRD-QYMRTGEGFLCVFAINSRKSFEDIHT--YREQIKRVKDSDDVPMVLVGNKCDL- 118
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
R V QGQ LA K + Y+E SA T++G+ + F VR +
Sbjct: 119 AART------------VSTRQGQDLA-KSYGIPYIETSAKTRQGVEEAFYTLVREI 161
|
H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 4e-25
Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 20/192 (10%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+G +VGK+ + + + F Y PT+ + +S T G L + DTAGQ++Y
Sbjct: 3 KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEY 62
Query: 68 DRLRPLSYPQTDV--FLICYSVVSPSSFDNVTSKWYPELKHHCPDA-PIILVGTKIDLRE 124
L P Y + +++ YSV S SF+ V + L ++ PI+LVG K DL
Sbjct: 63 SIL-PQKY-SIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHM 120
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE- 183
+R+ V E+G+KLA A ++E SA + + F+ + + + E
Sbjct: 121 ERQ------------VSAEEGKKLAESWGA-AFLESSAKENENVEEAFELLIEEIEKVEN 167
Query: 184 -PVKRRQRKCVI 194
++ KC +
Sbjct: 168 PLPPGQKSKCSV 179
|
Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180 |
| >gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7) | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 7e-25
Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPF-----TVDGIPVSLGLWDTA 62
K +++GD VGKT ++ Y F +Y T+ A F TVD V+L +WDTA
Sbjct: 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATI----GADFLTKEVTVDDRLVTLQIWDTA 57
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC----PDA-PIILVG 117
GQE + L Y D ++ Y V +P SF+++ S W E P+ P +++G
Sbjct: 58 GQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDS-WRDEFLIQASPRDPENFPFVVLG 116
Query: 118 TKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177
KIDL E R+ V ++ Q+ + Y E SA + Q F+ R
Sbjct: 117 NKIDLEEKRQ------------VSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIAR 164
Query: 178 AVLRPEP 184
L E
Sbjct: 165 LALEQEK 171
|
Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172 |
| >gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 1e-24
Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 14/175 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K ++VG G VGK+ + + + D F +Y PT D+Y +DG V L + DTAGQEDY
Sbjct: 2 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQEDY 61
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA-PIILVGTKIDLREDR 126
+R + + FL+ +S+ SF + L+ D P++LVG K DL + R
Sbjct: 62 AAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLEDKR 121
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ V E+ LA + V Y+E SA T+ + +VF + VR + +
Sbjct: 122 Q------------VSVEEAANLAEQ-WGVNYVETSAKTRANVDKVFFDLVREIRQ 163
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 2e-24
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 22/170 (12%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTAGQ 64
K V++GD VGK+ +L +T + F + T+ F + +DG + +WDTAGQ
Sbjct: 5 KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRT--IQIDGKTIKAQIWDTAGQ 62
Query: 65 EDYDRLRPLSYPQTDV-FLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDL 122
E Y R +Y + V L+ Y + S+F+NV +W EL+ H + I+LVG K DL
Sbjct: 63 ERY-RAITSAYYRGAVGALLVYDITKKSTFENVE-RWLKELRDHADSNIVIMLVGNKSDL 120
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R R V E+ + A K + ++E SAL + + F
Sbjct: 121 RHLRA------------VPTEEAKAFAEKNG-LSFIETSALDGTNVEEAF 157
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 3e-24
Identities = 63/196 (32%), Positives = 95/196 (48%), Gaps = 21/196 (10%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VVVG G VGK+ + I + + F EY PT+ D+Y +D L + DTAGQE+Y
Sbjct: 7 KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEY 66
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKIDLREDR 126
+R FL YS+ S SSF+ + S L+ D P+ILVG K DL +R
Sbjct: 67 SAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER 126
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV------- 179
+ V +GQ+LA K + ++E SA + + + F E VR +
Sbjct: 127 Q------------VSTGEGQELA-KSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKED 173
Query: 180 LRPEPVKRRQRKCVII 195
+ + K++ C+I+
Sbjct: 174 MPSQKQKKKGGLCLIL 189
|
Length = 189 |
| >gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1 | Back alignment and domain information |
|---|
Score = 91.9 bits (228), Expect = 9e-24
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 13/173 (7%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VV+G G VGK+ + + + F +Y PT+ D+Y VD L + DTAG E +
Sbjct: 3 KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTEQF 62
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLREDR 126
+R L F + YS+ + SF+++ L+ D P+ILVG K DL ++R
Sbjct: 63 TAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 122
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V +E+GQ LA + ++E SA ++ + ++F + VR +
Sbjct: 123 V------------VSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric) | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 5e-23
Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 18/182 (9%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R K V++G G VGK+ + + + + SFP + PT+ D Y +D P L + DTAGQ
Sbjct: 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQ 60
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL---KHHCPDAPIILVGTKID 121
++ +R + F+ICYSV SF + + EL D P++LVG K+D
Sbjct: 61 AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASE--FKELITRVRLTEDIPLVLVGNKVD 118
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
L + R+ V E+G+ LA + + E SA + + F VR + R
Sbjct: 119 LEQQRQ------------VTTEEGRNLAREF-NCPFFETSAALRFYIDDAFHGLVREIRR 165
Query: 182 PE 183
E
Sbjct: 166 KE 167
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172 |
| >gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 6e-23
Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 14/175 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VV+G G VGK+ + + + F +Y PT+ D+Y VDG L + DTAG E +
Sbjct: 3 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 62
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLREDR 126
+R L F++ YS+ + S+F+++ L+ D P+ILVG K DL ++R
Sbjct: 63 TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 122
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
V +EQGQ LA + ++E SA + + ++F + VR + R
Sbjct: 123 ------------VVGKEQGQNLARQWGC-AFLETSAKAKINVNEIFYDLVRQINR 164
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 8e-23
Identities = 58/159 (36%), Positives = 84/159 (52%), Gaps = 15/159 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K ++VGD VGKTC+L+ + +F G ++ TV + TVDG+ V L +WDTAGQE
Sbjct: 2 KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ + Y L+ Y V + SSFDN+ + L++ D I+L+G K D+ +
Sbjct: 62 RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSGE 121
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164
R VKRE G++LA K V +ME SA T
Sbjct: 122 RV------------VKREDGERLA-KEYGVPFMETSAKT 147
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 9e-23
Identities = 55/174 (31%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VV+G G VGK+ + + + + F Y PT+ D+Y +DG L + DTAG E +
Sbjct: 3 KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF 62
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA-PIILVGTKIDLREDR 126
+R L FL+ YSV S +S + + L+ D P++LVG K DL +DR
Sbjct: 63 TAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDR 122
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
+ V RE G L+ + V + E SA + + +VF + VR ++
Sbjct: 123 Q------------VSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168 |
| >gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 6e-22
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 16/150 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTAG 63
IK +VVG+G VGK+ M+ + F +Y T+ F V L LWDTAG
Sbjct: 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123
QE++D + Y ++ +S SF+ + W +++ C D P++LV TKIDL
Sbjct: 61 QEEFDAITKAYYRGAQACILVFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLL 119
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIR 153
+ + + E+ + LA +++
Sbjct: 120 DQ------------AVITNEEAEALAKRLQ 137
|
Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 6e-22
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VV+G G VGK+ + + + + +F +Y PT+ D Y VD P L + DTAG E +
Sbjct: 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 62
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLREDR 126
+R L F++ YS+V+ +F ++ ++ PIILVG K+DL +R
Sbjct: 63 ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER 122
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177
E V +G+ LA + +ME SA ++ + ++F E VR
Sbjct: 123 E------------VSSAEGRALAEEW-GCPFMETSAKSKTMVNELFAEIVR 160
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 1e-21
Identities = 60/162 (37%), Positives = 84/162 (51%), Gaps = 24/162 (14%)
Query: 10 VVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTV-DGIPVSLGLWDTAGQEDY 67
+V+GD TVGK+ +L +T F PTV D +S + G+ + L LWDTAGQE
Sbjct: 6 IVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE-- 63
Query: 68 DRLRPL--SYPQTDV-FLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPI-ILVGTKIDL 122
R R + SY + V L+ + + + SF++V W E + H P P+ ILVG K DL
Sbjct: 64 -RFRSITRSYYRNSVGVLLVFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDL 121
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164
R+ V RE+ +KLA K +KY+E SA T
Sbjct: 122 ESQRQ------------VTREEAEKLA-KDLGMKYIETSART 150
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 85.4 bits (211), Expect = 3e-21
Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
+ +++GD VGKTC+L +T + F ++ T+ D VDGI V + +WDTAGQE
Sbjct: 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA-PIILVGTKIDLRED 125
Y + Y + + Y + S S+ ++ KW ++ + P+ IL+G K D +
Sbjct: 62 YQTITKQYYRRAQGIFLVYDISSERSYQHIM-KWVSDVDEYAPEGVQKILIGNKADEEQK 120
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R+ V EQG KLA K + + E SA T + +++ F VL+
Sbjct: 121 RQ------------VGDEQGNKLA-KEYGMDFFETSACTNKNIKESFTRLTELVLQ 163
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 9e-21
Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K ++VGDG VGKT + + T F +Y+PT+ + + F + P+ +WDTAGQE
Sbjct: 10 FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ LR Y + +I + V S ++ NV W+ ++ C + PI+LVG K+D++ D
Sbjct: 70 KFGGLRDGYYIKGQCAIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVK-D 127
Query: 126 RE 127
R+
Sbjct: 128 RQ 129
|
Length = 215 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 9e-21
Identities = 54/171 (31%), Positives = 78/171 (45%), Gaps = 27/171 (15%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-----------SAPFTVDGIPVS 55
IK + +GD VGKT L YT + F +++ TV ++ + V
Sbjct: 5 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64
Query: 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPI 113
L LWDTAGQE + L + FL+ + + S SF NV W +L+ H C + I
Sbjct: 65 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNV-RNWMSQLQAHAYCENPDI 123
Query: 114 ILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164
+L+G K DL + RE V Q ++LA+K + Y E SA T
Sbjct: 124 VLIGNKADLPDQRE------------VSERQARELADKYG-IPYFETSAAT 161
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-20
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V+VGDG GKT + + T F +YV T+ + + F + + +WDTAGQE
Sbjct: 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ LR Y Q +I + V S ++ NV W+ +L C + PI+L G K+D+++
Sbjct: 61 KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 119
Query: 126 R 126
+
Sbjct: 120 K 120
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 2e-20
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 22/179 (12%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K +++GD VGK+C+L+ + D++ Y+ T+ D +DG V L +WDTAGQE
Sbjct: 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE- 62
Query: 67 YDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDL 122
R R ++ Y +I Y V SF+NV +W E+ + + +LVG K DL
Sbjct: 63 --RFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 119
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ + V + ++ A+++ + ++E SA + + F R + +
Sbjct: 120 TDKKV------------VDYTEAKEFADELG-IPFLETSAKNATNVEEAFMTMAREIKK 165
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 83.1 bits (205), Expect = 6e-20
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 16/183 (8%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPF-TVDGIPVSLGLW 59
MS K +++GD VGK+C+L+ +T F + T+ + A T+D P+ L +W
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60
Query: 60 DTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGT 118
DTAGQE + + Y L+ Y + +F+++ S W + + H + I+L+G
Sbjct: 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGN 119
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178
K DL R V E+G++ A K + +ME SA T + + + F +
Sbjct: 120 KCDLAHRR------------AVSTEEGEQFA-KEHGLIFMEASAKTAQNVEEAFIKTAAK 166
Query: 179 VLR 181
+ +
Sbjct: 167 IYK 169
|
Length = 210 |
| >gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2) | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 8e-20
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP-FTVDGIPVSLGLWDTAGQED 66
K +++GD VGK+C+L+ +T F + T+ + A T+DG + L +WDTAGQE
Sbjct: 6 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 65
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRED 125
+ + Y L+ Y + +F+++TS W + + H + I+L+G K DL
Sbjct: 66 FRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHSNSNMTIMLIGNKCDLESR 124
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
RE V E+G+ A + + +ME SA T + + F + +
Sbjct: 125 RE------------VSYEEGEAFARE-HGLIFMETSAKTASNVEEAFINTAKEIYD 167
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168 |
| >gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4) | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-19
Identities = 51/178 (28%), Positives = 72/178 (40%), Gaps = 21/178 (11%)
Query: 8 KCVVVGDGTVGKT--CMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTA 62
+C VVGD VGK+ + +F Y T + P V L ++D+A
Sbjct: 2 QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP--DAPIILVGTKI 120
GQE + + + Q V + Y V + SF+N S+W ++ H P +LVG K
Sbjct: 62 GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNC-SRWINRVRTHSHGLHTPGVLVGNKC 120
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178
DL + RE V Q Q LA +K+ E SA G F RA
Sbjct: 121 DLTDRRE------------VDAAQAQALAQA-NTLKFYETSAKEGVGYEAPFLSLARA 165
|
RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 1e-19
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 24/175 (13%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGI-----PVSLGLWDTA 62
K +++G+ +VGKT L Y DSF +V TV F V + + L +WDTA
Sbjct: 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV----GIDFKVKTVYRNDKRIKLQIWDTA 58
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKID 121
GQE Y + Y F++ Y + + SF N W ++K + D A +ILVG K D
Sbjct: 59 GQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVILVGNKCD 117
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAV 176
+ ++R V E+G++LA+++ ++ E SA ++QVF+ V
Sbjct: 118 MEDER------------VVSAERGRQLADQL-GFEFFEASAKENINVKQVFERLV 159
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 3e-19
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V+VGDG GKT + + T F +Y PT+ + + F + + WDTAGQE
Sbjct: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123
+ LR Y +I + V + ++ NV + W+ +L C + PI+L G K+D++
Sbjct: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVK 130
|
Length = 219 |
| >gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24) | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 3e-19
Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 12/168 (7%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQ 64
+K V++G +VGKT ++ Y F G Y T+ + A V V+LG+WDTAG
Sbjct: 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
E Y+ + + Y ++CY + SSF+ W EL++ I L GTK DL E
Sbjct: 61 ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKF-WVKELQNLEEHCKIYLCGTKSDLIE 119
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
+++L V Q A++I+A ++ E S+ T + + ++F
Sbjct: 120 --------QDRSLRQVDFHDVQDFADEIKA-QHFETSSKTGQNVDELF 158
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 3e-19
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP-FTVDGIPVSLGLWDTAGQED 66
K VV+GD GK+ +L FP E + D + VDG L +WD G+E+
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTS--KWYPELKHHCPDAPIILVGTKI 120
+ D L+ Y + S + V+ W P L+ P+ILVG K+
Sbjct: 61 LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9) | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 4e-19
Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 24/181 (13%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTAG 63
+K +++GDG VGK+ ++ Y T+ F + T+ F N VDG V+L +WDTAG
Sbjct: 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKD--LEVDGHFVTLQIWDTAG 63
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC----PDA-PIILVGT 118
QE + LR Y +D L+ +SV SF N+ S W E ++ P++ P +++G
Sbjct: 64 QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGN 122
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178
KID+ +R+ V E+ Q Y E SA + F+EAVR
Sbjct: 123 KIDI-PERQ------------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 169
Query: 179 V 179
V
Sbjct: 170 V 170
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (198), Expect = 5e-19
Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 17/170 (10%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K +++GD VGK+ +L+S+ + S + PT+ D TV G + L +WDTAGQE
Sbjct: 16 KILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP--DAPIILVGTKIDLRE 124
+ L Y ++ Y V +F N++ W E++ + D +LVG K+D
Sbjct: 75 FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174
+R+ V RE+G LA K ++ECSA T+ + Q F+E
Sbjct: 135 ERD------------VSREEGMALA-KEHGCLFLECSAKTRENVEQCFEE 171
|
Length = 211 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 9e-19
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 22/177 (12%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP-FTVDGIPVSLGLWDTAGQED 66
K +++G GK+C+L + + F + T+ + + V G V L +WDTAGQE
Sbjct: 2 KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE- 60
Query: 67 YDRLRPL--SYPQTDV-FLICYSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDL 122
R R + SY + L+ Y + S SF+ +T W + + PD IILVG K DL
Sbjct: 61 --RFRSVTRSYYRGAAGALLVYDITSRESFNALT-NWLTDARTLASPDIVIILVGNKKDL 117
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
+DRE V + + A + + ++E SALT + + F + R++
Sbjct: 118 EDDRE------------VTFLEASRFAQE-NGLLFLETSALTGENVEEAFLKCARSI 161
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 4e-18
Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAG 63
R K +V+GD VGKTC+ + FP T+ D +DG + + LWDTAG
Sbjct: 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAG 60
Query: 64 QEDYDR-LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKI 120
QE + + + Y + Y V + +SF ++ S W E + H + P ILVG K
Sbjct: 61 QERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKC 119
Query: 121 DLREDRE 127
DLRE +
Sbjct: 120 DLREQIQ 126
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 7e-18
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQED 66
K +++GD VGKTC++ + + +F T+ +++ + G V L +WDTAGQE
Sbjct: 5 KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLRED 125
+ + Y + +I Y + SSF++V W E++ + + ++L+G K DL E
Sbjct: 65 FRTITQSYYRSANGAIIAYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
RE V E+ LA + +E SA + + F
Sbjct: 124 RE------------VLFEEACTLAEHYGILAVLETSAKESSNVEEAF 158
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 1e-17
Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 23/172 (13%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K +VVGD +VGKTC++ + D F Y T+ D F V G+P SL LWDTAGQE
Sbjct: 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPE-LKHHCPDAPII-LVGTKIDLRE 124
+ + Y +I + + +S ++ T +W + LK + P + ++ LVGTK DL
Sbjct: 62 FKCIASTYYRGAQAIIIVFDLTDVASLEH-TRQWLEDALKENDPSSVLLFLVGTKKDL-- 118
Query: 125 DRETLNLLSEQNLSPVKREQGQ----KLANKIRAVKYMECSALTQRGLRQVF 172
SP + + KLA +++A +Y SALT +R F
Sbjct: 119 ------------SSPAQYALMEQDAIKLAREMKA-EYWAVSALTGENVRDFF 157
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2) | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 4e-17
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65
+K +++GD VGK+ ++ + D + P + Y +G + + WDTAGQE
Sbjct: 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDL 122
+ + Y + ++ + V ++ N+ SKWY EL+ + P+ P I+V KIDL
Sbjct: 61 RFQTMHASYYHKAHACILVFDVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDL 116
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-16
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K +++GD VGK+ +L+ + ++F G Y+ T+ D ++G V L +WDTAGQE
Sbjct: 8 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKID 121
+ + Y T ++ Y V + SF NV +W E++ +C D +LVG K D
Sbjct: 68 FRTITSTYYRGTHGVIVVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKND 121
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-16
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 21/182 (11%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
IK + +G+ VGK+C++ Y F +Y+PT+ +Y +V V + +D +G
Sbjct: 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP------IILVGTK 119
+Y +R Y T L+ Y V SF+ + W E+K +++ K
Sbjct: 61 EYLEVRNEFYKDTQGVLLVYDVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANK 119
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
IDL + R V ++G+ A + KY E SA T G+ ++F ++
Sbjct: 120 IDLTKHRA------------VSEDEGRLWAES-KGFKYFETSACTGEGVNEMFQTLFSSI 166
Query: 180 LR 181
+
Sbjct: 167 VD 168
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 2e-16
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPG-EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
+ V++GD VGK+ + +T + Y + D Y +VDG +L ++D QED
Sbjct: 2 RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQED 61
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDLRE 124
L D ++I YSV SSF+ S+ +L+ D PIILVG K DL
Sbjct: 62 GMWLEDSCMQVGDAYVIVYSVTDRSSFE-KASELRIQLRRARQAEDIPIILVGNKSDLVR 120
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV-LRP- 182
RE V ++G+ A + K++E SA Q + ++F+ VR V LR
Sbjct: 121 SRE------------VSVQEGRACA-VVFDCKFIETSAALQHNVDELFEGIVRQVRLRRD 167
Query: 183 -EPVKRRQRKC 192
+ R+
Sbjct: 168 SKEKNTRRMAS 178
|
RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219 |
| >gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 4e-16
Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 18/189 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
+ V +G VGKT ++ + D+F ++ TV + +S + V G+ V++ + DT+G +
Sbjct: 1 RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA--PIILVGTKIDLRED 125
+R LS D F + YSV P SF+ V E+ D PI++VG KID +
Sbjct: 61 PAMRKLSIQNGDAFALVYSVDDPESFEEVKR-LREEILEVKEDKFVPIVVVGNKIDSLAE 119
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP--- 182
R+ + + LS V+ + ++E SA + +VF E ++ P
Sbjct: 120 RQ---VEAADALSTVELDWNN---------GFVEASAKDNENVTEVFKELLQQANLPSWL 167
Query: 183 EPVKRRQRK 191
P RR+R+
Sbjct: 168 SPALRRRRE 176
|
Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 6e-16
Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V++G+ VGKTC++ +T FP G+ D + G + L +WDTAGQE
Sbjct: 9 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPI-ILVGTKIDLRED 125
+ + Y + ++ Y + SF + +W E++ + + I ILVG KIDL E
Sbjct: 69 FRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAER 127
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174
RE V +++ ++ + + + Y+E SA + ++F +
Sbjct: 128 RE------------VSQQRAEEFS-DAQDMYYLETSAKESDNVEKLFLD 163
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 8e-16
Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQED 66
K V++GD VGK+ +L +T + F E T+ ++ V+G V +WDTAGQE
Sbjct: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRED 125
Y + Y L+ Y + +FDNV +W EL+ H + I++ G K DL
Sbjct: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDL--- 129
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
+L V E GQ LA K + ++E SAL + + F
Sbjct: 130 ---------NHLRSVAEEDGQALAEK-EGLSFLETSALEATNVEKAF 166
|
Length = 216 |
| >gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12) | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 9e-16
Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 17/179 (9%)
Query: 10 VVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVD--GIPVSLGLWDTAGQEDY 67
+++G VGKT ++ +T D+F TV ++ TV+ G + L +WDTAGQE +
Sbjct: 4 IIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIK-TVELRGKKIRLQIWDTAGQERF 62
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL-KHHCPDAPIILVGTKIDLREDR 126
+ + Y ++ Y + +FD++ KW + K+ DA ++LVG K+D DR
Sbjct: 63 NSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDR 121
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPV 185
E + R+QG+K A +I +++ E SA + ++F + V +L+ P+
Sbjct: 122 E------------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPL 168
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202 |
| >gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32) | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-15
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 23/181 (12%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVD-GIPVSLGLWDTAGQE 65
K +V+GD VGKT ++ Y F Y T+ D D V L LWD AGQE
Sbjct: 2 KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL--KHHCPDA---PIILVGTKI 120
+ + + Y +I + V PS+F+ V KW +L K P+ P +L+ K
Sbjct: 62 RFGGMTRVYYKGAVGAIIVFDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPALLLANKC 120
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DL+++R EQ + + + + E SA + +EA+R ++
Sbjct: 121 DLKKERLA-----------KDPEQMDQFCKENGFIGWFETSAKENINI----EEAMRFLV 165
Query: 181 R 181
+
Sbjct: 166 K 166
|
Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 2e-15
Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 16/174 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFT-VDGIPVSLGLWDTAGQED 66
K +++GD VGK+C+L +T F + T+ + V+G + L +WDTAGQE
Sbjct: 4 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRED 125
+ + Y L+ Y + S++++++S W + ++ P+ I L+G K DL
Sbjct: 64 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLEAQ 122
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
R+ V E+ ++ A++ + ++ECSA T + F E + +
Sbjct: 123 RD------------VTYEEAKQFADE-NGLLFLECSAKTGENVEDAFLETAKKI 163
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 2e-15
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 12 VGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL 70
VGDG GKT + + T F +YV T+ + + F + P+ +WDTAGQE + L
Sbjct: 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60
Query: 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
R Y Q +I + V + ++ NV + W+ +L C + PI+L G K+D+++
Sbjct: 61 RDGYYIQGQCAIIMFDVTARVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDVKD 113
|
Ran is involved in the active transport of proteins through nuclear pores. Length = 200 |
| >gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI) | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-14
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
+ VV G G VGK+ +++ + +F Y+PT+ D Y + +L + DT G +
Sbjct: 3 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQF 62
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKW--YPELK-HHCPDAPIILVGTKIDLRE 124
++ LS + F++ YS+ S S + + + E+K ++ PI+LVG K D
Sbjct: 63 PAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDESP 122
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174
RE V +G LA +ME SA T ++++F E
Sbjct: 123 SRE------------VSSSEGAALARTWN-CAFMETSAKTNHNVQELFQE 159
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 3e-14
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDG-IPVSLGLWDTAGQ 64
IK VV+GDG GKT ++ + + F Y T+ D +S T+ G + V+L +WD GQ
Sbjct: 1 IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP----IILVGTKI 120
+ ++ + Y + + SF+N+ W +K ++ ++LVG K
Sbjct: 61 QIGGKMLDKYIYGAQAVCLVYDITNSQSFENL-EDWLSVVKKVNEESETKPKMVLVGNKT 119
Query: 121 DLREDR 126
DL +R
Sbjct: 120 DLEHNR 125
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
| >gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1) | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 9e-14
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
+K ++GD +GKT +++ Y F EY+ T+ N+ ++ G ++ +WD GQ
Sbjct: 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDL--- 122
++ + PL L + + S+ +++ WY + + A ILVGTK DL
Sbjct: 61 EFINMLPLVCKDAVAILFMFDLTRKSTLNSIKE-WYRQARGFNKTAIPILVGTKYDLFAD 119
Query: 123 --REDRETL 129
E++E +
Sbjct: 120 LPPEEQEEI 128
|
Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182 |
| >gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 1e-12
Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
+K ++VGD VGK +L S S Y + +Y + +DG V L LWDT+GQ
Sbjct: 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66
Query: 66 DYDRL-RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
+ + R S + L+ Y + + SFD + +W E+ H P P ILVG ++ L
Sbjct: 67 RFCTIFRSYSRGAQGIILV-YDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAF 124
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
R+ V EQ Q A + + + E S L + + F E R VL
Sbjct: 125 KRQ------------VATEQAQAYAERN-GMTFFEVSPLCNFNITESFTELARIVL 167
|
The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189 |
| >gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1) | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-12
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 21/172 (12%)
Query: 10 VVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR 69
VV+G VGKT ++ + F +Y PT+ D + +++ G L + DT+G +
Sbjct: 4 VVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA 63
Query: 70 LRPLSYPQTDVFLICYSVVSPSSFDNV--------TSKWYPELK-HHCPDAPIILVGTKI 120
+R LS DVF++ +S+ + SF+ V +K + K P+++ G K
Sbjct: 64 MRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKA 123
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
D RE V+R++ ++L Y E SA L ++F
Sbjct: 124 DRDFPRE------------VQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMF 163
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-12
Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 6/141 (4%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTAG 63
K ++VG G VGKT + + F G+ T ++ P + + L +WD G
Sbjct: 2 AKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIP-APERKKIRLNVWDFGG 60
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123
QE Y ++L+ + + + V W ++K +P+ILVGT ID
Sbjct: 61 QEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRV-PYWLRQIKAFGGVSPVILVGTHIDES 119
Query: 124 EDRE-TLNLLSEQNLSPVKRE 143
D + L+++ + +
Sbjct: 120 CDEDILKKALNKKFPAIINDI 140
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (141), Expect = 5e-11
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 16/148 (10%)
Query: 29 DSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87
D+F Y T+ D S +D PV L LWDTAGQE + L P + ++ Y +
Sbjct: 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62
Query: 88 VSPSSFDNVTSKWYPE-LKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ 146
+ SF+N T+KW + L D I LVG K DL + R+ V E+G
Sbjct: 63 TNRQSFEN-TTKWIQDILNERGKDVIIALVGNKTDLGDLRK------------VTYEEGM 109
Query: 147 KLANKIRAVKYMECSALTQRGLRQVFDE 174
+ A + + + E SA ++ +F +
Sbjct: 110 QKAQEYNTM-FHETSAKAGHNIKVLFKK 136
|
Length = 176 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-08
Identities = 46/203 (22%), Positives = 77/203 (37%), Gaps = 25/203 (12%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
+K V++GD VGKT +L Y F + V TV A + P ++ +WDTAG+E
Sbjct: 1 LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTV---GGAFYLKQWGPYNISIWDTAGREQ 56
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
+ L + ++ Y V + S + + ++ D +VG K+DL E+
Sbjct: 57 FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116
Query: 127 -ETLNLLSEQNLSP------VKREQGQKLANKIRAVK-------------YMECSALTQR 166
+ V E + +I K E SA T
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY 176
Query: 167 GLRQVFDEAVRAVLRPEPVKRRQ 189
+ ++F+ VL P + +R
Sbjct: 177 NVDELFEYLFNLVL-PLILAQRA 198
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-07
Identities = 49/188 (26%), Positives = 73/188 (38%), Gaps = 28/188 (14%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDGIPVSLGLWD----- 60
++ V+G VGKT ++ + FP EY+PT Y + G L + D
Sbjct: 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60
Query: 61 ----TAGQEDYD-RLRPLSYPQTDVFLICYSVVSPSSFDNVTS---KWYPELKHHCPDAP 112
TAGQE D R R L + F++ Y + SP SF V + + P
Sbjct: 61 RYPGTAGQEWMDPRFRGLR--NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPP 118
Query: 113 IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
I++VG K D++ LS L K Y+ECSA + +F
Sbjct: 119 IVVVGNK----RDQQRHRFAPRHVLS--------VLVRKSWKCGYLECSAKYNWHILLLF 166
Query: 173 DEAVRAVL 180
E + +
Sbjct: 167 KELLISAT 174
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198 |
| >gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 3e-05
Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 27/175 (15%)
Query: 11 VVGDGTVGKTCMLISYTTDSFPGEYVP---TVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
+VG+ GK+ ++ Y T G YV + VDG L + D G D
Sbjct: 5 IVGNLRSGKSALVHRYLT----GSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD- 59
Query: 68 DRLRPLSYPQ-TDVFLICYSVVSPSSFDNVTSKWYPELKHHCP--DAPIILVGTKIDLRE 124
+ D + +S+ +SF V + Y +L + + P+ILVGT+
Sbjct: 60 -----AQFAGWVDAVIFVFSLEDEASFQTV-YRLYHQLSSYRNISEIPLILVGTQ----- 108
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
D +S N + + ++L ++ Y E A + +VF EA + +
Sbjct: 109 DA-----ISASNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 6e-05
Identities = 43/186 (23%), Positives = 67/186 (36%), Gaps = 41/186 (22%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIP---VSLGL 58
+ ++ +++G GKT +L +PT+ F V+ + V +
Sbjct: 10 GWNKEMRILILGLDNAGKTTILYKLKLGEI-VTTIPTI------GFNVETVTYKNVKFTV 62
Query: 59 WDTAGQEDYDRLRPL---SYPQTDVFLICYSVVSPSSFDNVTSKWY-----PELKHHCPD 110
WD GQE LRPL +P TD + + + + EL D
Sbjct: 63 WDVGGQE---SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELA----D 115
Query: 111 APIILVGTKIDLRED---RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRG 167
AP++++ K DL E LL L K R + CSA+T G
Sbjct: 116 APLLILANKQDLPGAMSEAEIRELLGLHEL-------------KDRPWEIQGCSAVTGEG 162
Query: 168 LRQVFD 173
L + D
Sbjct: 163 LDEGLD 168
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 7e-04
Identities = 42/174 (24%), Positives = 61/174 (35%), Gaps = 29/174 (16%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYV---PTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
K ++VG GKT +L + GE V PT+ N I +WD GQ
Sbjct: 17 KVIIVGLDNAGKTTILYQFLL----GEVVHTSPTIGSNVEE-IVYKNI--RFLMWDIGGQ 69
Query: 65 EDYDRLRP---LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKI 120
E LR Y TD ++ + Y L H A ++++ K
Sbjct: 70 E---SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQ 126
Query: 121 DLREDRETLNLLSEQ-NLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173
DL + T +SE L+ ++ C ALT GL + D
Sbjct: 127 DL-KGAMTPAEISESLGLTSIRDHTWH----------IQGCCALTGEGLPEGLD 169
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 7e-04
Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 21/175 (12%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V +G GKT +L D ++VPT+ S T+ + +D G E
Sbjct: 21 KIVFLGLDNAGKTTLLHMLKDDRL-AQHVPTLHPT-SEELTIGNV--KFTTFDLGGHEQA 76
Query: 68 DRLRPLSYPQTD--VFLICYSVVSPSSFDNVTSKWYPELK-----HHCPDAPIILVGTKI 120
R+ +P+ D VFL+ P F EL + PI+++G KI
Sbjct: 77 RRVWKDYFPEVDGIVFLV--DAADPERFQESKE----ELDSLLNDEELANVPILILGNKI 130
Query: 121 DLRE--DRETL-NLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
D E L L + K K++N IR V+ CS + ++G + F
Sbjct: 131 DKPGAVSEEELREALGLYGTTTGKGGVSLKVSN-IRPVEVFMCSVVKRQGYGEGF 184
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.001
Identities = 53/211 (25%), Positives = 82/211 (38%), Gaps = 57/211 (27%)
Query: 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLG-------- 57
+ V++G + GKT +L + F VPT F + I VSLG
Sbjct: 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTK------GFNTEKIKVSLGNAKGVTFH 55
Query: 58 LWDTAGQEDYDRLRPL--SYPQ-TD--VFLICYSVVSPSSFDNVTSKWYPELK---H--- 106
WD GQE +LRPL SY + TD VF++ D+V + E K H
Sbjct: 56 FWDVGGQE---KLRPLWKSYTRCTDGIVFVV----------DSVDVERMEEAKTELHKIT 102
Query: 107 HCPD---APIILVGTKIDLRED---RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160
+ P++++ K DL E LL+ LS Q
Sbjct: 103 KFSENQGVPVLVLANKQDLPNALPVSEVEKLLALHELSSSTPWHVQP------------A 150
Query: 161 SALTQRGLRQVFDEAVRAVLRPEPVKRRQRK 191
A+ GL++ ++ +L+ + R+Q+K
Sbjct: 151 CAIIGEGLQEGLEKLYEMILKRRKMLRQQKK 181
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 195 | |||
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| KOG0084|consensus | 205 | 100.0 | ||
| KOG0092|consensus | 200 | 100.0 | ||
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 100.0 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 100.0 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| KOG0078|consensus | 207 | 100.0 | ||
| KOG0098|consensus | 216 | 100.0 | ||
| KOG0094|consensus | 221 | 100.0 | ||
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 100.0 | |
| KOG0394|consensus | 210 | 100.0 | ||
| KOG0080|consensus | 209 | 100.0 | ||
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 100.0 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 100.0 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 100.0 | |
| KOG0079|consensus | 198 | 100.0 | ||
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 100.0 | |
| KOG0393|consensus | 198 | 100.0 | ||
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 100.0 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 100.0 | |
| KOG0087|consensus | 222 | 100.0 | ||
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 100.0 | |
| KOG0093|consensus | 193 | 100.0 | ||
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 100.0 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 100.0 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 100.0 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 100.0 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 100.0 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 100.0 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 100.0 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 100.0 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 100.0 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 100.0 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 100.0 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 100.0 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 100.0 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 100.0 | |
| KOG0086|consensus | 214 | 100.0 | ||
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 100.0 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 100.0 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 100.0 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 100.0 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 100.0 | |
| KOG0095|consensus | 213 | 100.0 | ||
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 100.0 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 100.0 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 100.0 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 100.0 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 100.0 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 100.0 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 100.0 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 100.0 | |
| KOG0091|consensus | 213 | 100.0 | ||
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 100.0 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 100.0 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 100.0 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 100.0 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 100.0 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 100.0 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 100.0 | |
| KOG0088|consensus | 218 | 100.0 | ||
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 100.0 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 100.0 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 100.0 | |
| PLN03108 | 210 | Rab family protein; Provisional | 100.0 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 100.0 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 100.0 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 100.0 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 100.0 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 100.0 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 100.0 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 100.0 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 100.0 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 100.0 | |
| KOG0395|consensus | 196 | 100.0 | ||
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| KOG0083|consensus | 192 | 100.0 | ||
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 100.0 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 100.0 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 100.0 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 100.0 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 100.0 | |
| PLN03118 | 211 | Rab family protein; Provisional | 100.0 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 100.0 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 100.0 | |
| KOG0081|consensus | 219 | 100.0 | ||
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 100.0 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 100.0 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| KOG0097|consensus | 215 | 99.98 | ||
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.98 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.98 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.98 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.98 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.97 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.97 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.97 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.97 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.97 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.97 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.97 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.97 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.96 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.96 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.96 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.96 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.96 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.96 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.96 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.96 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.96 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.96 | |
| KOG0073|consensus | 185 | 99.96 | ||
| KOG0070|consensus | 181 | 99.95 | ||
| KOG4252|consensus | 246 | 99.95 | ||
| KOG0075|consensus | 186 | 99.95 | ||
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.95 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.95 | |
| PTZ00099 | 176 | rab6; Provisional | 99.95 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.94 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.94 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.94 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.94 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.94 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.94 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.94 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.93 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.93 | |
| KOG0071|consensus | 180 | 99.93 | ||
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.93 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.93 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.92 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.92 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.92 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.92 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.92 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.92 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.92 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.92 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.92 | |
| KOG3883|consensus | 198 | 99.92 | ||
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.92 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.92 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.91 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.91 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.91 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.91 | |
| KOG0076|consensus | 197 | 99.91 | ||
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.91 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.91 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.91 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.91 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.9 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.9 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.9 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.9 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.9 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.9 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.9 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.89 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.89 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.89 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.89 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.89 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.89 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.89 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.89 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.89 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.89 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.89 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.89 | |
| KOG0072|consensus | 182 | 99.88 | ||
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.88 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.88 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.88 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.88 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.88 | |
| KOG4423|consensus | 229 | 99.88 | ||
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.87 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.87 | |
| KOG1673|consensus | 205 | 99.87 | ||
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.87 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.87 | |
| KOG0074|consensus | 185 | 99.87 | ||
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.87 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.87 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.86 | |
| KOG0096|consensus | 216 | 99.86 | ||
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.86 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.86 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.86 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.85 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.85 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.85 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.84 | |
| KOG1707|consensus | 625 | 99.84 | ||
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.84 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.83 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.83 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.83 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.83 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.83 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.83 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.83 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.82 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.82 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.82 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.81 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.81 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.81 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.81 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.81 | |
| KOG1423|consensus | 379 | 99.81 | ||
| KOG0462|consensus | 650 | 99.81 | ||
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.81 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.8 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.79 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.78 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.77 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.77 | |
| KOG0077|consensus | 193 | 99.76 | ||
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.76 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.76 | |
| KOG1489|consensus | 366 | 99.76 | ||
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.75 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.75 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.75 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.74 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.73 | |
| KOG3905|consensus | 473 | 99.73 | ||
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.73 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.73 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.73 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.73 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.73 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.72 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.72 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.72 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.72 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.72 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.71 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.71 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.71 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.7 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.69 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.69 | |
| KOG0090|consensus | 238 | 99.68 | ||
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.67 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.67 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.67 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.66 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.66 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.65 | |
| KOG1145|consensus | 683 | 99.65 | ||
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.62 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.62 | |
| KOG1191|consensus | 531 | 99.62 | ||
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.61 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.6 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.6 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.6 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.59 | |
| KOG1532|consensus | 366 | 99.59 | ||
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.59 | |
| PRK13768 | 253 | GTPase; Provisional | 99.56 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.55 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.52 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.52 | |
| KOG1490|consensus | 620 | 99.52 | ||
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.49 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.48 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.48 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.47 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.46 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.45 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.45 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.43 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.43 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.42 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.41 | |
| KOG3886|consensus | 295 | 99.41 | ||
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.41 | |
| KOG0705|consensus | 749 | 99.41 | ||
| KOG1144|consensus | 1064 | 99.39 | ||
| KOG1707|consensus | 625 | 99.39 | ||
| KOG0461|consensus | 522 | 99.39 | ||
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.37 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.37 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.37 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.35 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.33 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.32 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.31 | |
| KOG3887|consensus | 347 | 99.3 | ||
| KOG0082|consensus | 354 | 99.29 | ||
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.29 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.28 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.27 | |
| KOG1143|consensus | 591 | 99.26 | ||
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.25 | |
| KOG0458|consensus | 603 | 99.24 | ||
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.24 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.21 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.19 | |
| KOG1486|consensus | 364 | 99.18 | ||
| KOG0468|consensus | 971 | 99.17 | ||
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.15 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.14 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 99.12 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.11 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.1 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.06 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.06 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.04 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.03 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.02 | |
| KOG2486|consensus | 320 | 99.02 | ||
| KOG2655|consensus | 366 | 99.02 | ||
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.02 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 99.02 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.01 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.96 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 98.96 | |
| KOG1547|consensus | 336 | 98.95 | ||
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.94 | |
| KOG0410|consensus | 410 | 98.91 | ||
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.9 | |
| KOG0463|consensus | 641 | 98.9 | ||
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.88 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.85 | |
| KOG0460|consensus | 449 | 98.84 | ||
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.74 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.74 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.72 | |
| KOG0448|consensus | 749 | 98.7 | ||
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.7 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.69 | |
| KOG0466|consensus | 466 | 98.68 | ||
| KOG1487|consensus | 358 | 98.66 | ||
| KOG0465|consensus | 721 | 98.65 | ||
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.64 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.64 | |
| KOG0099|consensus | 379 | 98.63 | ||
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 98.63 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.62 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.61 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.6 | |
| KOG0467|consensus | 887 | 98.59 | ||
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.57 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.55 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.54 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.54 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.52 | |
| KOG1954|consensus | 532 | 98.52 | ||
| KOG1491|consensus | 391 | 98.49 | ||
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.49 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.49 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.48 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.47 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.44 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.44 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.43 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.38 | |
| KOG1534|consensus | 273 | 98.38 | ||
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.38 | |
| KOG0085|consensus | 359 | 98.36 | ||
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.33 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.32 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.3 | |
| KOG0464|consensus | 753 | 98.29 | ||
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.27 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.25 | |
| KOG0447|consensus | 980 | 98.25 | ||
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.24 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.21 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 98.2 | |
| KOG3859|consensus | 406 | 98.19 | ||
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.18 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.18 | |
| KOG3929|consensus | 363 | 98.17 | ||
| KOG0469|consensus | 842 | 98.16 | ||
| KOG0459|consensus | 501 | 98.13 | ||
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.13 | |
| KOG4273|consensus | 418 | 98.11 | ||
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.1 | |
| KOG1533|consensus | 290 | 98.07 | ||
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.07 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.05 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.03 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 98.01 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 98.0 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.99 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.98 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.9 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.85 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.84 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.83 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.79 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.79 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.78 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 97.75 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.75 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 97.73 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.72 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.71 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.71 | |
| KOG1424|consensus | 562 | 97.71 | ||
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.7 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.68 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.67 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.66 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.66 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.63 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.63 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.61 | |
| KOG2485|consensus | 335 | 97.6 | ||
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.59 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.59 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.58 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.56 | |
| KOG2484|consensus | 435 | 97.55 | ||
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.55 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.52 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.5 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.5 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.5 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 97.48 | |
| KOG0780|consensus | 483 | 97.48 | ||
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 97.47 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.47 | |
| PTZ00088 | 229 | adenylate kinase 1; Provisional | 97.44 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 97.42 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.41 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 97.4 | |
| PRK14527 | 191 | adenylate kinase; Provisional | 97.4 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.4 | |
| COG0194 | 191 | Gmk Guanylate kinase [Nucleotide transport and met | 97.39 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 97.37 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.35 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.35 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.34 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.33 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 97.32 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.3 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.29 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.29 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.29 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 97.27 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.27 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.25 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 97.25 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.22 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.22 | |
| KOG2423|consensus | 572 | 97.21 | ||
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.19 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 97.18 | |
| PF11111 | 176 | CENP-M: Centromere protein M (CENP-M); InterPro: I | 97.17 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 97.17 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 97.16 | |
| PLN02674 | 244 | adenylate kinase | 97.16 | |
| PLN02200 | 234 | adenylate kinase family protein | 97.16 | |
| PTZ00301 | 210 | uridine kinase; Provisional | 97.15 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 97.15 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.15 | |
| COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AM | 97.14 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 97.14 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 97.14 | |
| KOG2423|consensus | 572 | 97.14 | ||
| KOG3347|consensus | 176 | 97.14 | ||
| PRK05541 | 176 | adenylylsulfate kinase; Provisional | 97.13 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.13 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.12 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.12 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 97.11 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 97.1 | |
| PRK05057 | 172 | aroK shikimate kinase I; Reviewed | 97.1 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 97.09 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 97.08 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.06 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 97.06 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 97.05 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.04 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.04 | |
| PRK15453 | 290 | phosphoribulokinase; Provisional | 97.04 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 97.03 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 97.03 | |
| PF02367 | 123 | UPF0079: Uncharacterised P-loop hydrolase UPF0079; | 97.02 | |
| PRK02496 | 184 | adk adenylate kinase; Provisional | 97.01 | |
| TIGR01351 | 210 | adk adenylate kinases. Adenylate kinase (EC 2.7.4. | 97.01 |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=245.92 Aligned_cols=191 Identities=64% Similarity=1.141 Sum_probs=165.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
|+.+||+++|++|||||||+.+|..+.|..++.||.+..+...+.+++..+.+++||++|+++|+.++..+++++|++|+
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 36799999999999999999999999999999999987776667789999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||++++++++.+...|...+....+++|+++|+||+|+.+.........+...+.+..++++.+++.++.++++++||+
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 99999999999997568887776667899999999999976544333333444456778889999999987799999999
Q ss_pred CcccHHHHHHHHHHHHcCCCccccCCCceeeC
Q psy10443 164 TQRGLRQVFDEAVRAVLRPEPVKRRQRKCVII 195 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~~~~~~~~~~c~~~ 195 (195)
+|.|++++|.++++.+..+...+ ++++|.+|
T Consensus 161 ~g~~v~e~f~~l~~~~~~~~~~~-~~~~c~~~ 191 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLNPTPIK-DTKSCVLL 191 (191)
T ss_pred CCCCHHHHHHHHHHHHhcccccc-CCCCceeC
Confidence 99999999999999998876544 34569875
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=232.12 Aligned_cols=168 Identities=28% Similarity=0.557 Sum_probs=154.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
..-|||+++|++|||||+|+.||..+.|++.+..|.+..+ ...+.++++.+++++|||+||++|+++..+||++|+|+|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 3568999999999999999999999999999999997777 467889999999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||+++.+||..+.. |+..++++. +++|.++|+||+|+.+. +.++.++++.|+..++...++++|
T Consensus 87 ~vyDiT~~~SF~~v~~-Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~------------~~v~~~~a~~fa~~~~~~~f~ETS 153 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKR-WIQEIDRYASENVPKLLVGNKCDLTEK------------RVVSTEEAQEFADELGIPIFLETS 153 (205)
T ss_pred EEEEcccHHHhhhHHH-HHHHhhhhccCCCCeEEEeeccccHhh------------eecCHHHHHHHHHhcCCcceeecc
Confidence 9999999999999985 999999885 67899999999999887 679999999999999943399999
Q ss_pred cCCcccHHHHHHHHHHHHcCCCc
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
|+++.|+++.|..+...+.+...
T Consensus 154 AK~~~NVe~~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 154 AKDSTNVEDAFLTLAKELKQRKG 176 (205)
T ss_pred cCCccCHHHHHHHHHHHHHHhcc
Confidence 99999999999999988865543
|
|
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=223.22 Aligned_cols=169 Identities=30% Similarity=0.572 Sum_probs=154.8
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
....+||+++|+.+||||||+.||..+.|.+...||++..+ +....+++..++|.+|||+||++|+++-+.|+|+++++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 45789999999999999999999999999888888886655 67888899999999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
|+|||+++.+||..+.+ |...+.+.. +++-+.++|||+|+.+. |.+..+++..++...+ ..++++
T Consensus 82 ivvYDit~~~SF~~aK~-WvkeL~~~~~~~~vialvGNK~DL~~~------------R~V~~~ea~~yAe~~g-ll~~ET 147 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKN-WVKELQRQASPNIVIALVGNKADLLER------------REVEFEEAQAYAESQG-LLFFET 147 (200)
T ss_pred EEEEecccHHHHHHHHH-HHHHHHhhCCCCeEEEEecchhhhhhc------------ccccHHHHHHHHHhcC-CEEEEE
Confidence 99999999999999996 999998875 56888889999999986 6699999999999998 789999
Q ss_pred ccCCcccHHHHHHHHHHHHcCCCcc
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
||++|.|++++|..|.+.++.....
T Consensus 148 SAKTg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 148 SAKTGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred ecccccCHHHHHHHHHHhccCcccc
Confidence 9999999999999999999876654
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=230.11 Aligned_cols=189 Identities=46% Similarity=0.820 Sum_probs=163.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
.||+++|++|||||||+++|..+.+...+.||....+.....+++..+.+.+||++|++.+..++..+++++|++|+|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 38999999999999999999999998888899877776667778888999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR 166 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (195)
++++++++.+...|+..+....++.|+++|+||+|+.................+..++...++...+.++++++||++|.
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 160 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR 160 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence 99999999887668888887778899999999999977654433333333334667788888888887789999999999
Q ss_pred cHHHHHHHHHHHHcCCCccccCCCceeeC
Q psy10443 167 GLRQVFDEAVRAVLRPEPVKRRQRKCVII 195 (195)
Q Consensus 167 ~v~~~~~~l~~~~~~~~~~~~~~~~c~~~ 195 (195)
|++++|.++.+.+..+++..+..+.|.||
T Consensus 161 ~v~e~f~~l~~~~~~~~~~~~~~~~~~~~ 189 (189)
T cd04134 161 GVNEAFTEAARVALNVRPPHPHSSACTIA 189 (189)
T ss_pred CHHHHHHHHHHHHhcccccCcCCCcceeC
Confidence 99999999999999988888888889886
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=225.32 Aligned_cols=177 Identities=45% Similarity=0.833 Sum_probs=153.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
...+||+++|++|||||||+++|..+.+..++.||....+...+.+++..+.+++||++|+++|..++..+++++|++|+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 46789999999999999999999999999999999988777778889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||++++++++.+...|...+....++.|+++|+||+|+...............+.++.++++++++.+++++|++|||+
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk 162 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 162 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence 99999999999985569999988888999999999999864322111111112245888999999999996689999999
Q ss_pred Cccc-HHHHHHHHHHHHc
Q psy10443 164 TQRG-LRQVFDEAVRAVL 180 (195)
Q Consensus 164 ~~~~-v~~~~~~l~~~~~ 180 (195)
+|.| ++++|..+++.++
T Consensus 163 ~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 163 QSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 9998 9999999998654
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=222.28 Aligned_cols=175 Identities=45% Similarity=0.824 Sum_probs=150.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
++||+++|++|||||||+++|..+.++..+.||....+...+.+++..+.+++||++|++.|..+++.+++++|++|+||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 47999999999999999999999999999999998777777788999999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|+++++|++.+...|...+....++.|+++|+||+|+...............+.+..++++++++.++..+++++||++|
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~ 160 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTS 160 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcC
Confidence 99999999997556999998888899999999999986532211111111224588899999999999668999999999
Q ss_pred cc-HHHHHHHHHHHHc
Q psy10443 166 RG-LRQVFDEAVRAVL 180 (195)
Q Consensus 166 ~~-v~~~~~~l~~~~~ 180 (195)
+| ++++|..+++...
T Consensus 161 ~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 161 EKSVRDIFHVATMACL 176 (178)
T ss_pred CcCHHHHHHHHHHHHh
Confidence 95 9999999998654
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=221.69 Aligned_cols=173 Identities=67% Similarity=1.198 Sum_probs=152.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|||||||+++|..+.|..++.||.+..+...+.+++..+.+.+||++|+++|..++..+++++|++|+|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 79999999999999999999999998899999988777667788999999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR 166 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (195)
++++++++.+...|+..+....+++|+++|+||+|+...............+.+..++++.+++..+.+.++++||++|.
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~ 161 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQK 161 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCC
Confidence 99999999987669888877777899999999999976544444444444467888899999999887789999999999
Q ss_pred cHHHHHHHHHHHH
Q psy10443 167 GLRQVFDEAVRAV 179 (195)
Q Consensus 167 ~v~~~~~~l~~~~ 179 (195)
|++++|+.+++..
T Consensus 162 ~v~~~f~~~~~~~ 174 (175)
T cd01874 162 GLKNVFDEAILAA 174 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998854
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=228.15 Aligned_cols=177 Identities=46% Similarity=0.853 Sum_probs=152.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
.+||+|+|++|||||||+++|..+.|+..|.||....+...+.+++..+.|.+||++|++.|..+++.+++++|++|+||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 37999999999999999999999999999999998887777888999999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|++++++++.+...|...+....+++|+++|+||+|+.................++.+++..+++.+++++|++|||+++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~ 160 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS 160 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 99999999999767988887777899999999999996543222211122223477889999999999779999999998
Q ss_pred cc-HHHHHHHHHHHHcCC
Q psy10443 166 RG-LRQVFDEAVRAVLRP 182 (195)
Q Consensus 166 ~~-v~~~~~~l~~~~~~~ 182 (195)
.+ ++++|..+....+.+
T Consensus 161 ~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 161 ERSVRDVFHVATVASLGR 178 (222)
T ss_pred CcCHHHHHHHHHHHHHhc
Confidence 85 999999999976643
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=221.18 Aligned_cols=173 Identities=57% Similarity=1.056 Sum_probs=150.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|+|||||+.++..+.|..++.||.+..+...+.+++..+.+++||++|+++|..++..++++++++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 69999999999999999999999999899999988777777889999999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR 166 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (195)
+++++|++.+...|+..+....+++|+++|+||+|+.+.... .......+.+..+++.++++..+..++++|||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQY--LADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhh--hhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 999999999854699988877778999999999999654211 111222345788899999999985579999999999
Q ss_pred cHHHHHHHHHHHHcC
Q psy10443 167 GLRQVFDEAVRAVLR 181 (195)
Q Consensus 167 ~v~~~~~~l~~~~~~ 181 (195)
|++++|..+++.+.+
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999997644
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=229.63 Aligned_cols=178 Identities=41% Similarity=0.733 Sum_probs=152.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
..+||+++|++|||||||+++|..+.|...+.||....+...+.+++..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 56899999999999999999999999999999999877777788899999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
||++++++++.+...|+..+....++.|+++|+||+|+...............+.+..++++++++.++...|++|||++
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt 171 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFT 171 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 99999999998655699999887788999999999998643221111111122568888999999999955799999999
Q ss_pred cc-cHHHHHHHHHHHHcCC
Q psy10443 165 QR-GLRQVFDEAVRAVLRP 182 (195)
Q Consensus 165 ~~-~v~~~~~~l~~~~~~~ 182 (195)
|. |++++|..++..+.+.
T Consensus 172 g~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 172 SEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCHHHHHHHHHHHHHHh
Confidence 98 8999999999877643
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=220.70 Aligned_cols=167 Identities=32% Similarity=0.602 Sum_probs=154.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
..-+||+++|++|||||+++.+|..+.|...+..|.+-.+ ..++..++..+.+++||++||++|+.+...|++.|++++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~ 89 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL 89 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence 3568999999999999999999999999999999987766 567888999999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCC-CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCP-DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||+++..|++++.. |+..+.++.+ ++|.++|+||+|+... |.+..+..+.++.+++ +.|+++|
T Consensus 90 LvyDitne~Sfeni~~-W~~~I~e~a~~~v~~~LvGNK~D~~~~------------R~V~~e~ge~lA~e~G-~~F~EtS 155 (207)
T KOG0078|consen 90 LVYDITNEKSFENIRN-WIKNIDEHASDDVVKILVGNKCDLEEK------------RQVSKERGEALAREYG-IKFFETS 155 (207)
T ss_pred EEEEccchHHHHHHHH-HHHHHHhhCCCCCcEEEeecccccccc------------ccccHHHHHHHHHHhC-CeEEEcc
Confidence 9999999999999996 9999999865 8999999999999886 7799999999999998 8999999
Q ss_pred cCCcccHHHHHHHHHHHHcCCCc
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
|++|.|+++.|..|++.+..+.+
T Consensus 156 Ak~~~NI~eaF~~La~~i~~k~~ 178 (207)
T KOG0078|consen 156 AKTNFNIEEAFLSLARDILQKLE 178 (207)
T ss_pred ccCCCCHHHHHHHHHHHHHhhcc
Confidence 99999999999999998875443
|
|
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=215.46 Aligned_cols=170 Identities=29% Similarity=0.533 Sum_probs=157.0
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCcc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTD 79 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d 79 (195)
|+-...+|++++|+.|||||+|+.+|+...|.+.++.|.+..+ ...+++++++++|++|||+||+.|++.+.+|++.+.
T Consensus 1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 6667889999999999999999999999999999998887776 457889999999999999999999999999999999
Q ss_pred EEEEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 80 VFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
++|+|||+++.++|.++.. |+..++.+ .+|..+++++||+|+... |.++.++.+.|+++++ +.++
T Consensus 81 GalLVydit~r~sF~hL~~-wL~D~rq~~~~NmvImLiGNKsDL~~r------------R~Vs~EEGeaFA~ehg-Lifm 146 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHLTS-WLEDARQHSNENMVIMLIGNKSDLEAR------------REVSKEEGEAFAREHG-LIFM 146 (216)
T ss_pred ceEEEEEccchhhHHHHHH-HHHHHHHhcCCCcEEEEEcchhhhhcc------------ccccHHHHHHHHHHcC-ceee
Confidence 9999999999999999985 99999887 589999999999999887 5699999999999998 6788
Q ss_pred EeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++||++++|++++|......+++..+
T Consensus 147 ETSakt~~~VEEaF~nta~~Iy~~~q 172 (216)
T KOG0098|consen 147 ETSAKTAENVEEAFINTAKEIYRKIQ 172 (216)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998886543
|
|
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=215.69 Aligned_cols=166 Identities=31% Similarity=0.545 Sum_probs=152.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+|++++|+.+|||||||.||+.+.|...|.+|.+..+ +.++.+.++.++|++|||+|||+|+.+.+.|+++++++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 3569999999999999999999999999999999997776 678888999999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-C-CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-P-DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+|||++|..|+++.. +|+..++... + ++-+++|+||.||.+. +.+..++....+++++ ..|+++
T Consensus 100 iVyDit~~~Sfe~t~-kWi~dv~~e~gs~~viI~LVGnKtDL~dk------------rqvs~eEg~~kAkel~-a~f~et 165 (221)
T KOG0094|consen 100 IVYDITDRNSFENTS-KWIEDVRRERGSDDVIIFLVGNKTDLSDK------------RQVSIEEGERKAKELN-AEFIET 165 (221)
T ss_pred EEEeccccchHHHHH-HHHHHHHhccCCCceEEEEEcccccccch------------hhhhHHHHHHHHHHhC-cEEEEe
Confidence 999999999999998 5999888764 3 5889999999999988 5588899999999999 489999
Q ss_pred ccCCcccHHHHHHHHHHHHcCCC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
||+.|.|+.++|..|...+....
T Consensus 166 sak~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 166 SAKAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred cccCCCCHHHHHHHHHHhccCcc
Confidence 99999999999999998887664
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=220.60 Aligned_cols=167 Identities=29% Similarity=0.467 Sum_probs=147.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
...+||+++|+.|||||||+.+|..+.+..++.++.+..+ ...+.+++..+.+++||++|+++|..++..+++++|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4568999999999999999999999888877777765544 345677899999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|||++++.+++.+. .|+..+....+++|++||+||+|+.+. +.+..++++.+++..+ ++++++||
T Consensus 84 lVfD~t~~~Sf~~~~-~w~~~i~~~~~~~piilVGNK~DL~~~------------~~v~~~~~~~~a~~~~-~~~~e~SA 149 (189)
T cd04121 84 LVYDITNRWSFDGID-RWIKEIDEHAPGVPKILVGNRLHLAFK------------RQVATEQAQAYAERNG-MTFFEVSP 149 (189)
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccchhc------------cCCCHHHHHHHHHHcC-CEEEEecC
Confidence 999999999999997 599999887789999999999999764 4477888999999988 79999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCc
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++|.|++++|+++++.+.....
T Consensus 150 k~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 150 LCNFNITESFTELARIVLMRHG 171 (189)
T ss_pred CCCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999998775443
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=216.77 Aligned_cols=173 Identities=73% Similarity=1.306 Sum_probs=150.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
.+||+++|++|||||||+.++..+.+..++.||....+...+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 37999999999999999999999999899999987776667778899999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|++++++++.+...|+..+....+++|+++|+||+|+...............+.+..+++..++++++.++++++||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 99999999998766888887777789999999999996543333333333345688899999999998779999999999
Q ss_pred ccHHHHHHHHHHH
Q psy10443 166 RGLRQVFDEAVRA 178 (195)
Q Consensus 166 ~~v~~~~~~l~~~ 178 (195)
.|++++|+.+++.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998864
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=211.42 Aligned_cols=169 Identities=29% Similarity=0.554 Sum_probs=152.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
...+||+++|++|+|||||+++|....|..++..|.+..+ ++.+.++++.+.+++|||+||++|.++...+++++|.++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 3469999999999999999999999999999999996665 688999999999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-----CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-----PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
+|||+++++|++.+.. |...+..+. ...|+||+|||+|+....+ +.++.+.++.||...+.+||
T Consensus 87 lvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~----------r~VS~~~Aq~WC~s~gnipy 155 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKS----------RQVSEKKAQTWCKSKGNIPY 155 (210)
T ss_pred EEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCcc----------ceeeHHHHHHHHHhcCCcee
Confidence 9999999999999986 887776542 2489999999999976433 77999999999999999999
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
|++|||...|++.+|+.+.+......
T Consensus 156 fEtSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 156 FETSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred EEecccccccHHHHHHHHHHHHHhcc
Confidence 99999999999999999999776554
|
|
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=204.66 Aligned_cols=163 Identities=33% Similarity=0.596 Sum_probs=148.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
.+||+++|++|||||||+.+|....|....+.|.+..+ .....+++..+++.+|||+||++|+.++++|++++.++|+|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlV 90 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILV 90 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEE
Confidence 48999999999999999999999999877777776666 56788999999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
||++.++++..+. .|+..+.-+. +++..++|+||+|.... |.++.++...|+++++ +-|+++||
T Consensus 91 YDVT~Rdtf~kLd-~W~~Eld~Ystn~diikmlVgNKiDkes~------------R~V~reEG~kfAr~h~-~LFiE~SA 156 (209)
T KOG0080|consen 91 YDVTSRDTFVKLD-IWLKELDLYSTNPDIIKMLVGNKIDKESE------------RVVDREEGLKFARKHR-CLFIECSA 156 (209)
T ss_pred EEccchhhHHhHH-HHHHHHHhhcCCccHhHhhhcccccchhc------------ccccHHHHHHHHHhhC-cEEEEcch
Confidence 9999999999995 6999999874 56777999999997654 7799999999999999 56999999
Q ss_pred CCcccHHHHHHHHHHHHcCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~ 182 (195)
++.+|++..|+.+++.+++-
T Consensus 157 kt~~~V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 157 KTRENVQCCFEELVEKIIET 176 (209)
T ss_pred hhhccHHHHHHHHHHHHhcC
Confidence 99999999999999998743
|
|
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=219.91 Aligned_cols=174 Identities=36% Similarity=0.612 Sum_probs=146.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
||+++|.+|||||||+++|..+.+...+.+|.+..+.....+++..+.+++||+||+++|..++..+++.+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999998888888888776666677888889999999999999999999999999999999999
Q ss_pred CChhcHHHHHHhhHHHHhhh----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 88 VSPSSFDNVTSKWYPELKHH----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
++++++..+.. |+..+... .++.|+++|+||+|+... +.+..++...+++.++ ++++++||+
T Consensus 81 ~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~SAk 146 (190)
T cd04144 81 TSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYE------------REVSTEEGAALARRLG-CEFIEASAK 146 (190)
T ss_pred CCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhcccc------------CccCHHHHHHHHHHhC-CEEEEecCC
Confidence 99999998875 77666543 257899999999999754 3356667788888888 689999999
Q ss_pred CcccHHHHHHHHHHHHcCCCc------------cccCCCceeeC
Q psy10443 164 TQRGLRQVFDEAVRAVLRPEP------------VKRRQRKCVII 195 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~~~------------~~~~~~~c~~~ 195 (195)
+|.|++++|+++.+.+.+.+. +++++++|++|
T Consensus 147 ~~~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (190)
T cd04144 147 TNVNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM 190 (190)
T ss_pred CCCCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence 999999999999998763332 33555678875
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=218.70 Aligned_cols=163 Identities=26% Similarity=0.556 Sum_probs=143.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+.|+++|++|||||||+++|..+.|...+.+|.+..+ ...+.+++..+.+++||++|+++|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4699999999999999999999999888888886554 456788899999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|++++++++.+.. |+..+.... +++|+++|+||+|+... +.+..+++.++++.+..+.++++||++
T Consensus 81 Dvtd~~Sf~~l~~-w~~~i~~~~~~~~piilVgNK~DL~~~------------~~v~~~~~~~~a~~~~~~~~~etSAkt 147 (202)
T cd04120 81 DITKKETFDDLPK-WMKMIDKYASEDAELLLVGNKLDCETD------------REISRQQGEKFAQQITGMRFCEASAKD 147 (202)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccccc------------cccCHHHHHHHHHhcCCCEEEEecCCC
Confidence 9999999999974 888887653 57999999999999654 447778888899887447899999999
Q ss_pred cccHHHHHHHHHHHHcCC
Q psy10443 165 QRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~~~ 182 (195)
|.|++++|.++++.+.+.
T Consensus 148 g~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 148 NFNVDEIFLKLVDDILKK 165 (202)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999987643
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=216.60 Aligned_cols=181 Identities=53% Similarity=0.968 Sum_probs=152.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeC-CEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVD-GIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||+++|.++.+...+.+|....+...+... +..+.+.+||+||++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999998888888877765555554 77889999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|++++++++.+...|+..+....+++|+++|+||+|+..... ..+.+..++..+++..++..+++++||++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 152 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN--------LDRKVTPAQAESVAKKQGAFAYLECSAKTM 152 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc--------ccCCcCHHHHHHHHHHcCCcEEEEccCCCC
Confidence 999999999987668887776667899999999999865321 013466778889999988558999999999
Q ss_pred ccHHHHHHHHHHHHcCCCc-----cccCCCceeeC
Q psy10443 166 RGLRQVFDEAVRAVLRPEP-----VKRRQRKCVII 195 (195)
Q Consensus 166 ~~v~~~~~~l~~~~~~~~~-----~~~~~~~c~~~ 195 (195)
.|++++|..+.+.+..... +++++++|++|
T Consensus 153 ~~v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~ 187 (187)
T cd04132 153 ENVEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL 187 (187)
T ss_pred CCHHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence 9999999999998876542 44555779876
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=210.54 Aligned_cols=173 Identities=72% Similarity=1.232 Sum_probs=152.0
Q ss_pred EEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVV 88 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 88 (195)
|+|+|++|||||||+++|.++.+...+.++....+.....+++..+.+.+||+||++.+..++..+++++|++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 68999999999999999999999888888887777777788899999999999999999999999999999999999999
Q ss_pred ChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccH
Q psy10443 89 SPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGL 168 (195)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 168 (195)
++++++.+...|+..+....+++|+++|+||+|+...............+.+..+++..+++.++..+++++||++|.|+
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 160 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV 160 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence 99999998767999988877899999999999997654433333344445678888999999998668999999999999
Q ss_pred HHHHHHHHHHHcC
Q psy10443 169 RQVFDEAVRAVLR 181 (195)
Q Consensus 169 ~~~~~~l~~~~~~ 181 (195)
+++|..+++.+.+
T Consensus 161 ~~lf~~l~~~~~~ 173 (174)
T smart00174 161 REVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988754
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=212.00 Aligned_cols=164 Identities=32% Similarity=0.557 Sum_probs=145.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+.+||+++|++|||||||++++..+.+...+.+|.+..+...+.+++..+.+++||+||++.+..++..+++.+|++|+|
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 45899999999999999999999999988888998877776778899999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
||++++.++..+.. |...+... .+++|+++|+||+|+... +.++.++...+++..+ ++++++||
T Consensus 81 ~d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e~Sa 146 (172)
T cd04141 81 YSVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQ------------RQVTTEEGRNLAREFN-CPFFETSA 146 (172)
T ss_pred EECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhc------------CccCHHHHHHHHHHhC-CEEEEEec
Confidence 99999999999985 77776653 357999999999998654 4477778889998887 79999999
Q ss_pred CCcccHHHHHHHHHHHHcCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~ 182 (195)
++|.|++++|+++++.+.+.
T Consensus 147 ~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 147 ALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999887753
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=213.40 Aligned_cols=165 Identities=34% Similarity=0.539 Sum_probs=144.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
+..+||+++|++|+|||||++++..+.+...+.+|.+..+...+.+++..+.+++||+||++++..++..+++++|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 67899999999999999999999999888888888877777777888999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||++++++++.+.. |...+... .+++|+++++||+|+... +.+..++...+++.++ ++++++|
T Consensus 83 v~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~------------~~i~~~~~~~~~~~~~-~~~~e~S 148 (189)
T PTZ00369 83 VYSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSE------------RQVSTGEGQELAKSFG-IPFLETS 148 (189)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc------------cccCHHHHHHHHHHhC-CEEEEee
Confidence 999999999999875 77766554 357999999999998654 3356667778888877 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|++++|.+|++.+.+.
T Consensus 149 ak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 149 AKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999877654
|
|
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=201.35 Aligned_cols=162 Identities=30% Similarity=0.604 Sum_probs=150.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
-++.+++|++|+|||+|+.+|....|.+.|.-|++..+. .++.++|..+++++||++|+++|+.+...|+++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 368899999999999999999999999999999877764 5778899999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
||+++.+||.... +|++.++.+.+.+|-++|+||+|..+. +.+..++++.|+...+ +.+|++|+++
T Consensus 88 YDVTn~ESF~Nv~-rWLeei~~ncdsv~~vLVGNK~d~~~R------------rvV~t~dAr~~A~~mg-ie~FETSaKe 153 (198)
T KOG0079|consen 88 YDVTNGESFNNVK-RWLEEIRNNCDSVPKVLVGNKNDDPER------------RVVDTEDARAFALQMG-IELFETSAKE 153 (198)
T ss_pred EECcchhhhHhHH-HHHHHHHhcCccccceecccCCCCccc------------eeeehHHHHHHHHhcC-chheehhhhh
Confidence 9999999999998 599999999999999999999999876 6688899999999999 8999999999
Q ss_pred cccHHHHHHHHHHHHcC
Q psy10443 165 QRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~~ 181 (195)
+.|++..|.-|.+.+..
T Consensus 154 ~~NvE~mF~cit~qvl~ 170 (198)
T KOG0079|consen 154 NENVEAMFHCITKQVLQ 170 (198)
T ss_pred cccchHHHHHHHHHHHH
Confidence 99999999988876543
|
|
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=205.89 Aligned_cols=174 Identities=65% Similarity=1.100 Sum_probs=152.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|+|||||+++|..+.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++++|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999988888888877766677888889999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR 166 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (195)
++++++++.+...|...+....++.|+++++||+|+...............+.+..+++..+++.++..+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 160 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK 160 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence 99999999887668888877678899999999999976554444444555567788889999999987789999999999
Q ss_pred cHHHHHHHHHHHHc
Q psy10443 167 GLRQVFDEAVRAVL 180 (195)
Q Consensus 167 ~v~~~~~~l~~~~~ 180 (195)
|++++|+.+++.++
T Consensus 161 gi~~~f~~~~~~~~ 174 (174)
T cd04135 161 GLKTVFDEAILAIL 174 (174)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999998763
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >KOG0393|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=208.16 Aligned_cols=181 Identities=75% Similarity=1.254 Sum_probs=165.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeC-CEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVD-GIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+..+|++++|+.++|||+|+-.+..+.|++.|.||.-+++...+.++ ++.+.+.+|||+||++|..+++..+.++|.++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 46789999999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
++|++.+++|+.++..+|+..++++.+++|+++||+|.|+..+..............+..+++..+++++++..++++||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 99999999999999999999999999999999999999998554444444444566789999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCc
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++..|++++|+..++....+.+
T Consensus 162 ~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999998877654
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=204.50 Aligned_cols=171 Identities=57% Similarity=1.026 Sum_probs=147.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+|++++|++|+|||||++++..+.+..++.+|..+.+.....+++..+.+.+||+||++++..++..+++++|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999999998889999877777777888888999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR 166 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (195)
++++++++.+...|+..+....+++|+++++||+|+...............+.+..+++..+++..+..+++++||++|.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~ 160 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK 160 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 99999999886568888877667899999999999975433222222233356778889999999986689999999999
Q ss_pred cHHHHHHHHHH
Q psy10443 167 GLRQVFDEAVR 177 (195)
Q Consensus 167 ~v~~~~~~l~~ 177 (195)
|++++|+.++-
T Consensus 161 ~v~~lf~~~~~ 171 (173)
T cd04130 161 NLKEVFDTAIL 171 (173)
T ss_pred CHHHHHHHHHh
Confidence 99999998764
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=210.77 Aligned_cols=163 Identities=27% Similarity=0.445 Sum_probs=141.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeC-CEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVD-GIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.++ +..+.+.+||+||++.+..++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999988888888887554 3456666 7889999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh-----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH-----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (195)
||++++++++.+. .|+..+... ..++|+++|+||+|+... +.+..+++.++++..+..++++
T Consensus 81 ~D~t~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~e 147 (201)
T cd04107 81 FDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPCLLLANKCDLKKR------------LAKDGEQMDQFCKENGFIGWFE 147 (201)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhhcccCCCCCcEEEEEECCCcccc------------cccCHHHHHHHHHHcCCceEEE
Confidence 9999999999997 487776543 257899999999999753 3367788999999988678999
Q ss_pred eccCCcccHHHHHHHHHHHHcCC
Q psy10443 160 CSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+||++|.|++++|++|.+.+.+.
T Consensus 148 ~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 148 TSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999988654
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=204.46 Aligned_cols=166 Identities=31% Similarity=0.534 Sum_probs=153.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.-|||+++|+++||||-|+.||..+.|..+..+|.+..+ +....++++.++.++|||+||++|+..+..|++++.++++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 458999999999999999999999999988899987766 5678899999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|||++...+++.+. +|+..++.+. +++++++|+||+||.+- |.+..++++.++...+ ..++++||
T Consensus 93 VYDITr~~Tfenv~-rWL~ELRdhad~nivimLvGNK~DL~~l------------raV~te~~k~~Ae~~~-l~f~EtSA 158 (222)
T KOG0087|consen 93 VYDITRRQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLNHL------------RAVPTEDGKAFAEKEG-LFFLETSA 158 (222)
T ss_pred EEechhHHHHHHHH-HHHHHHHhcCCCCeEEEEeecchhhhhc------------cccchhhhHhHHHhcC-ceEEEecc
Confidence 99999999999887 5999999986 78999999999999885 6688999999999998 78999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCc
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
.++.|++++|+.++..+++.-.
T Consensus 159 l~~tNVe~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 159 LDATNVEKAFERVLTEIYKIVS 180 (222)
T ss_pred cccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999988875433
|
|
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=203.63 Aligned_cols=161 Identities=32% Similarity=0.566 Sum_probs=140.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
++||+++|.+|||||||++++..+.+...+.+|....+...+.+++..+.+.+||+||++.+..++..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 47999999999999999999999888888888887777677788898999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|++++.+++.+.. |...+... .++.|+++++||+|+... +.+..++...+++.++ ++++++||+
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 146 (164)
T cd04175 81 SITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDE------------RVVGKEQGQNLARQWG-CAFLETSAK 146 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhc------------cEEcHHHHHHHHHHhC-CEEEEeeCC
Confidence 9999999998875 66666542 468999999999999764 2355566777888877 789999999
Q ss_pred CcccHHHHHHHHHHHHc
Q psy10443 164 TQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~ 180 (195)
+|.|++++|.++.+.+.
T Consensus 147 ~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 147 AKINVNEIFYDLVRQIN 163 (164)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999988664
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=192.34 Aligned_cols=166 Identities=30% Similarity=0.561 Sum_probs=148.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecccee-EEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP-FTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
-+|++++|++.+|||||+.++.+..|...+..|.+..+... +--..+.+.+++|||+|+++|+.++..++++++++|++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 36999999999999999999999999888888887776543 33356779999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
||++|.+|+..+.. |...++.+. .+.|+++++||||+..+ |.++.+..+.++..+| ..+|++||+
T Consensus 101 yDitNeeSf~svqd-w~tqIktysw~naqvilvgnKCDmd~e------------Rvis~e~g~~l~~~LG-fefFEtSaK 166 (193)
T KOG0093|consen 101 YDITNEESFNSVQD-WITQIKTYSWDNAQVILVGNKCDMDSE------------RVISHERGRQLADQLG-FEFFETSAK 166 (193)
T ss_pred EecCCHHHHHHHHH-HHHHheeeeccCceEEEEecccCCccc------------eeeeHHHHHHHHHHhC-hHHhhhccc
Confidence 99999999999986 999998875 68999999999999887 7799999999999999 699999999
Q ss_pred CcccHHHHHHHHHHHHcCCCcc
Q psy10443 164 TQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
.+.|++++|+.++..+-.....
T Consensus 167 ~NinVk~~Fe~lv~~Ic~kmse 188 (193)
T KOG0093|consen 167 ENINVKQVFERLVDIICDKMSE 188 (193)
T ss_pred ccccHHHHHHHHHHHHHHHhhh
Confidence 9999999999999987665443
|
|
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=201.80 Aligned_cols=160 Identities=33% Similarity=0.578 Sum_probs=139.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
.+||+++|++|||||||++++..+.+...+.+|....+...+.+++..+.+.+||+||++++..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 47999999999999999999999988888888887666667788898999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|++++++++.+.. |...+... .++.|+++++||+|+... +.+..++...+++.++ .+++++||+
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 146 (163)
T cd04136 81 SITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDE------------RVVSREEGQALARQWG-CPFYETSAK 146 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc------------ceecHHHHHHHHHHcC-CeEEEecCC
Confidence 9999999988875 77766653 357999999999998654 2355566777888877 799999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRAV 179 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~ 179 (195)
+|.|++++|.++.+.+
T Consensus 147 ~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 147 SKINVDEVFADLVRQI 162 (163)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998764
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=207.10 Aligned_cols=164 Identities=30% Similarity=0.568 Sum_probs=143.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
..+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+..++..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 468999999999999999999999988877888876443 3456667888899999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||++++++++.+.. |+..+....+..|+++|+||+|+... +.+..++...+++..+ ++++++||+
T Consensus 85 v~D~~~~~s~~~~~~-~~~~i~~~~~~~piivVgNK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~ 150 (199)
T cd04110 85 VYDVTNGESFVNVKR-WLQEIEQNCDDVCKVLVGNKNDDPER------------KVVETEDAYKFAGQMG-ISLFETSAK 150 (199)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEECC
Confidence 999999999999874 88888877788999999999998764 3355677888888887 789999999
Q ss_pred CcccHHHHHHHHHHHHcCC
Q psy10443 164 TQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~ 182 (195)
+|.|++++|++|.+.+.+.
T Consensus 151 ~~~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 151 ENINVEEMFNCITELVLRA 169 (199)
T ss_pred CCcCHHHHHHHHHHHHHHh
Confidence 9999999999999988654
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=202.05 Aligned_cols=162 Identities=27% Similarity=0.552 Sum_probs=141.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
.+||+++|++|||||||+++|..+.+...+.+|.+..+. ..+.+++..+.+.+||+||++++...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 379999999999999999999999988888888766553 4567788889999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
||++++++++.+.. |+..+... .++.|+++|+||+|+... +.+..+++..+++..+ ++++++||+
T Consensus 82 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iiiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~ 147 (166)
T cd04122 82 YDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLEAQ------------RDVTYEEAKQFADENG-LLFLECSAK 147 (166)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc------------cCcCHHHHHHHHHHcC-CEEEEEECC
Confidence 99999999999875 87776554 467999999999999765 3366778888888887 789999999
Q ss_pred CcccHHHHHHHHHHHHcC
Q psy10443 164 TQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~ 181 (195)
+|.|++++|.++++.+.+
T Consensus 148 ~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 148 TGENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999987754
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=199.97 Aligned_cols=173 Identities=60% Similarity=1.043 Sum_probs=147.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
.||+++|++|||||||+++|..+.+...+.+|....+...+.+++..+.+.+||++|++.+...+..++.++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999998888888877766677788888999999999999999988889999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR 166 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (195)
++++++++.+...|...+....++.|+++++||+|+.................+...+.+.++...+..+++++||++|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE 161 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence 99999999887678888887777899999999999876544333333333345666788888888886789999999999
Q ss_pred cHHHHHHHHHHHH
Q psy10443 167 GLRQVFDEAVRAV 179 (195)
Q Consensus 167 ~v~~~~~~l~~~~ 179 (195)
|++++|.++.+.+
T Consensus 162 ~v~~lf~~l~~~~ 174 (175)
T cd01870 162 GVREVFEMATRAA 174 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=208.31 Aligned_cols=161 Identities=27% Similarity=0.467 Sum_probs=139.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCC-EEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDG-IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++ ..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888889986443 44555643 578999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhC----CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHC----PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
||++++++++.+.. |+..+.... .++|+++|+||+|+.+. +.+..++...+++.++ ++++++
T Consensus 81 ~D~t~~~s~~~~~~-w~~~l~~~~~~~~~~~piilVgNK~DL~~~------------~~v~~~~~~~~~~~~~-~~~~~i 146 (215)
T cd04109 81 YDVTNSQSFENLED-WYSMVRKVLKSSETQPLVVLVGNKTDLEHN------------RTVKDDKHARFAQANG-MESCLV 146 (215)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhccccCCCceEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEE
Confidence 99999999999874 888887653 35789999999999754 4467778888999888 689999
Q ss_pred ccCCcccHHHHHHHHHHHHcC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
||++|+|++++|++|.+.+..
T Consensus 147 SAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 147 SAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998753
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=207.09 Aligned_cols=170 Identities=25% Similarity=0.393 Sum_probs=133.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|.+|||||||+++|..+.+.. +.+|.+..+.. .....+.+.+||++|++.|..++..+++++|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~---~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYL---KQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEE---EEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999998864 56666544321 11245778899999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHh-------hhhhhhcCCCCccHHHHHHHHHHcCC-----
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRET-------LNLLSEQNLSPVKREQGQKLANKIRA----- 154 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~----- 154 (195)
+++++++..+...|........+++|+++|+||+|+...... .........+.+..+++..+++..+.
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence 999999999986555554444567999999999999752110 00011111256888899999998763
Q ss_pred --------ceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 155 --------VKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 155 --------~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
++|+++||++|.|++++|..+++.+.
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999998765
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=201.24 Aligned_cols=187 Identities=48% Similarity=0.818 Sum_probs=155.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+.||+|+|++|+|||||++++..+.+...+.++....+.....+++..+.+.+||++|++.+......+++.+++++++|
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 35899999999999999999998888777777776666666777888889999999999998887777889999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|+++++++..+...|+..+....+++|+++|+||+|+.+....... ....+.+..++...+++.++..+++++||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEE--YRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccc--cccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999876799999877788999999999998543211100 11124466677888999998778999999999
Q ss_pred ccHHHHHHHHHHHHcCCCccccCCCceee
Q psy10443 166 RGLRQVFDEAVRAVLRPEPVKRRQRKCVI 194 (195)
Q Consensus 166 ~~v~~~~~~l~~~~~~~~~~~~~~~~c~~ 194 (195)
.|++++|+++.+.+...+++.+-.++|.|
T Consensus 159 ~~v~~~f~~l~~~~~~~~~~~~~~~~~~~ 187 (187)
T cd04129 159 EGVDDVFEAATRAALLVRKSEPGAGCCII 187 (187)
T ss_pred CCHHHHHHHHHHHHhcccCcccccCcccC
Confidence 99999999999999888887776666653
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=198.49 Aligned_cols=158 Identities=29% Similarity=0.579 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+++||++|++++..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999999888888876554 456778888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|++++++++.+.. |+..+.... .++|+++|+||+|+... +.+..++...+++.++ ++++++||++
T Consensus 81 d~~~~~sf~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa~~ 146 (161)
T cd04117 81 DISSERSYQHIMK-WVSDVDEYAPEGVQKILIGNKADEEQK------------RQVGDEQGNKLAKEYG-MDFFETSACT 146 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 9999999999974 888777654 47999999999999765 4466788888988887 7899999999
Q ss_pred cccHHHHHHHHHHH
Q psy10443 165 QRGLRQVFDEAVRA 178 (195)
Q Consensus 165 ~~~v~~~~~~l~~~ 178 (195)
|.|++++|.+|.++
T Consensus 147 ~~~v~~~f~~l~~~ 160 (161)
T cd04117 147 NSNIKESFTRLTEL 160 (161)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999875
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=201.74 Aligned_cols=167 Identities=23% Similarity=0.494 Sum_probs=138.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||+++|..+.+..++.||.+..+ ...+.+++..+.+.+||++|++.|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999888999987654 456778899999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCC-CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCP-DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|+++++++.++.. |+..+....+ ..| ++|+||+|+........ +....++.+++++..+ .+++++||++
T Consensus 81 D~t~~~s~~~i~~-~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~-------~~~~~~~~~~~a~~~~-~~~~e~SAk~ 150 (182)
T cd04128 81 DLTRKSTLNSIKE-WYRQARGFNKTAIP-ILVGTKYDLFADLPPEE-------QEEITKQARKYAKAMK-APLIFCSTSH 150 (182)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCE-EEEEEchhccccccchh-------hhhhHHHHHHHHHHcC-CEEEEEeCCC
Confidence 9999999999974 8888776543 456 67899999964211000 1122356778888888 7899999999
Q ss_pred cccHHHHHHHHHHHHcCCC
Q psy10443 165 QRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~~~~ 183 (195)
|.|++++|.++.+.+.+..
T Consensus 151 g~~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 151 SINVQKIFKIVLAKAFDLP 169 (182)
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 9999999999999887543
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=198.77 Aligned_cols=160 Identities=32% Similarity=0.570 Sum_probs=137.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
++||+++|.+|+|||||++++..+.+...+.+|....+.....+++..+.+++||+||+++|..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999998888888876555667778888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|+++++++.++.. |...+... ..++|+++|+||+|+... +.+...+...++..++ ++++++||+
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 146 (163)
T cd04176 81 SLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESE------------REVSSAEGRALAEEWG-CPFMETSAK 146 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhc------------CccCHHHHHHHHHHhC-CEEEEecCC
Confidence 9999999999875 77666654 358999999999998653 2355566777777777 689999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRAV 179 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~ 179 (195)
+|.|++++|.++++.+
T Consensus 147 ~~~~v~~l~~~l~~~l 162 (163)
T cd04176 147 SKTMVNELFAEIVRQM 162 (163)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998754
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=199.46 Aligned_cols=159 Identities=41% Similarity=0.787 Sum_probs=146.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccce-eeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
||+++|++|||||||+++|.++.+...+.+|. .+.....+.+++..+.+.+||++|++.+..++..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998 55557788889999999999999999999888899999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCC-CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCP-DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~-~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
+++++|+..+. .|+..+....+ +.|+++++||+|+.+. +.+..++++++++.++ .+++++||+++
T Consensus 81 ~~~~~S~~~~~-~~~~~i~~~~~~~~~iivvg~K~D~~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa~~~ 146 (162)
T PF00071_consen 81 VTDEESFENLK-KWLEEIQKYKPEDIPIIVVGNKSDLSDE------------REVSVEEAQEFAKELG-VPYFEVSAKNG 146 (162)
T ss_dssp TTBHHHHHTHH-HHHHHHHHHSTTTSEEEEEEETTTGGGG------------SSSCHHHHHHHHHHTT-SEEEEEBTTTT
T ss_pred ccccccccccc-cccccccccccccccceeeecccccccc------------ccchhhHHHHHHHHhC-CEEEEEECCCC
Confidence 99999999998 59999998877 7999999999999874 5588889999999999 89999999999
Q ss_pred ccHHHHHHHHHHHHc
Q psy10443 166 RGLRQVFDEAVRAVL 180 (195)
Q Consensus 166 ~~v~~~~~~l~~~~~ 180 (195)
.|+.++|..+++.+.
T Consensus 147 ~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 147 ENVKEIFQELIRKIL 161 (162)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998764
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=206.50 Aligned_cols=163 Identities=29% Similarity=0.465 Sum_probs=139.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+..+||+++|.+|||||||+++++.+.+...+.+|.+..+ ...+..++..+.+.+||++|++.|..++..++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 5789999999999999999999999999888888886554 345566777899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|||++++++++.+.. |+..+....++.|+++|+||+|+... .+..++. .+++..+ ++++++||
T Consensus 91 lvfD~~~~~s~~~i~~-w~~~i~~~~~~~piilvgNK~Dl~~~-------------~v~~~~~-~~~~~~~-~~~~e~SA 154 (219)
T PLN03071 91 IMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAKQV-TFHRKKN-LQYYEISA 154 (219)
T ss_pred EEEeCCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEEchhhhhc-------------cCCHHHH-HHHHhcC-CEEEEcCC
Confidence 9999999999999874 99888877788999999999998542 1333344 6666665 78999999
Q ss_pred CCcccHHHHHHHHHHHHcCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~ 182 (195)
++|.|++++|.+|++.+.+.
T Consensus 155 k~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 155 KSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999988654
|
|
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=202.38 Aligned_cols=162 Identities=24% Similarity=0.462 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999998777778876544 355677888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|+++++++..+.. |+..+.... .+.|+++++||+|+.+. +.+..++...+++..+ ++++++||++
T Consensus 81 d~~~~~s~~~i~~-~~~~i~~~~~~~~~~ivv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~evSa~~ 146 (188)
T cd04125 81 DVTDQESFENLKF-WINEINRYARENVIKVIVANKSDLVNN------------KVVDSNIAKSFCDSLN-IPFFETSAKQ 146 (188)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECCCCccc------------ccCCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 9999999999985 888877653 46899999999998754 3356677778888877 5899999999
Q ss_pred cccHHHHHHHHHHHHcCC
Q psy10443 165 QRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~~~ 182 (195)
|.|++++|.+|.+.+.+.
T Consensus 147 ~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 147 SINVEEAFILLVKLIIKR 164 (188)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988643
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=201.24 Aligned_cols=170 Identities=44% Similarity=0.770 Sum_probs=133.2
Q ss_pred ceEEEEEcCCCCchHHHHH-HhhcC-----CCCCCccccee--ecccee--------EEeCCEEEEEEEEeCCCCccccc
Q psy10443 6 PIKCVVVGDGTVGKTCMLI-SYTTD-----SFPGEYVPTVF--DNYSAP--------FTVDGIPVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~-~l~~~-----~~~~~~~~t~~--~~~~~~--------~~~~~~~~~l~~~D~~G~~~~~~ 69 (195)
.+||+++|++|||||||+. ++.++ .+...+.||.. +.+... ..+++..+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999995 66554 34566778874 223221 25688999999999999976 3
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhh------h-hhcCCCCccH
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNL------L-SEQNLSPVKR 142 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~------~-~~~~~~~~~~ 142 (195)
+...+++++|++++|||+++++|++.+...|+..+....++.|+++|+||+|+......... . .....+.+..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 45678999999999999999999999875698888877778999999999998642110000 0 0001256888
Q ss_pred HHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 143 EQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
++++.+++.++ ++|++|||++|.|++++|+.+++.
T Consensus 160 ~e~~~~a~~~~-~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHHh
Confidence 99999999999 599999999999999999998864
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=190.56 Aligned_cols=163 Identities=28% Similarity=0.516 Sum_probs=148.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.-+|++++|+.|+|||+|+++|....|..+...|.+..+ +..+.+.++.+++++||++||++|++..+.|++++.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 357999999999999999999999999888888887766 5678889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|||+++.+++..+.+ |+..++... +++-+++++||.|+... +.+...++.+|+.+.. +-++++||
T Consensus 88 VYD~TsrdsfnaLtn-WL~DaR~lAs~nIvviL~GnKkDL~~~------------R~VtflEAs~FaqEne-l~flETSa 153 (214)
T KOG0086|consen 88 VYDITSRDSFNALTN-WLTDARTLASPNIVVILCGNKKDLDPE------------REVTFLEASRFAQENE-LMFLETSA 153 (214)
T ss_pred EEeccchhhHHHHHH-HHHHHHhhCCCcEEEEEeCChhhcChh------------hhhhHHHHHhhhcccc-eeeeeecc
Confidence 999999999999986 999988864 67889999999999887 5588899999999998 68999999
Q ss_pred CCcccHHHHHHHHHHHHcC
Q psy10443 163 LTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~ 181 (195)
++|+|+++.|-...+.+..
T Consensus 154 ~TGeNVEEaFl~c~~tIl~ 172 (214)
T KOG0086|consen 154 LTGENVEEAFLKCARTILN 172 (214)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 9999999999999888764
|
|
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=201.59 Aligned_cols=163 Identities=33% Similarity=0.585 Sum_probs=139.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeC----------CEEEEEEEEeCCCCccccccCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVD----------GIPVSLGLWDTAGQEDYDRLRPL 73 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~----------~~~~~l~~~D~~G~~~~~~~~~~ 73 (195)
+.+||+++|++|||||||+++|..+.+...+.+|.+..+. ..+.+. +..+.+.+||+||++++..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 4689999999999999999999999988888888755443 233332 45688999999999999999999
Q ss_pred CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 74 SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
+++++|++++|||+++++++.++.. |+..+... .++.|+++|+||+|+.+. +.+..++...+++.
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~------------~~v~~~~~~~~~~~ 149 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRN-WMSQLQTHAYCENPDIVLCGNKADLEDQ------------RQVSEEQAKALADK 149 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEeCccchhc------------CccCHHHHHHHHHH
Confidence 9999999999999999999999985 88887664 357899999999999765 33666788899999
Q ss_pred cCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
++ ++++++||++|.|++++|++|.+.+.+
T Consensus 150 ~~-~~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 150 YG-IPYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred cC-CeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 88 689999999999999999999987754
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=196.49 Aligned_cols=160 Identities=32% Similarity=0.600 Sum_probs=137.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+..++..+.+.+||+||++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999998877888776444 234556778899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|++++++++.+.. |+..+.... ++.|+++++||+|+... +....++..+++..++ ++++++||++
T Consensus 82 d~~~~~s~~~~~~-~~~~i~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (165)
T cd01865 82 DITNEESFNAVQD-WSTQIKTYSWDNAQVILVGNKCDMEDE------------RVVSSERGRQLADQLG-FEFFEASAKE 147 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCCEEEEEECcccCcc------------cccCHHHHHHHHHHcC-CEEEEEECCC
Confidence 9999999998875 888887654 57899999999999765 3355667777888877 6899999999
Q ss_pred cccHHHHHHHHHHHHc
Q psy10443 165 QRGLRQVFDEAVRAVL 180 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~ 180 (195)
|.|++++|+++.+.+.
T Consensus 148 ~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 148 NINVKQVFERLVDIIC 163 (165)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=197.12 Aligned_cols=161 Identities=29% Similarity=0.587 Sum_probs=140.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
.+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+++||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999888777777765443 45567788889999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
+|+++++++..+.. |+..+.... ++.|+++++||+|+... +.+..+++..++...+ ++++++||+
T Consensus 82 ~d~~~~~s~~~l~~-~~~~~~~~~~~~~~~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 147 (166)
T cd01869 82 YDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTDK------------RVVDYSEAQEFADELG-IPFLETSAK 147 (166)
T ss_pred EECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEEChhcccc------------cCCCHHHHHHHHHHcC-CeEEEEECC
Confidence 99999999999985 888887654 67999999999998665 3366677888888887 699999999
Q ss_pred CcccHHHHHHHHHHHHc
Q psy10443 164 TQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~ 180 (195)
+|.|++++|.++.+.+.
T Consensus 148 ~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 148 NATNVEQAFMTMAREIK 164 (166)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99999999999998775
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=197.11 Aligned_cols=163 Identities=28% Similarity=0.597 Sum_probs=141.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
..+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999999999888888876554 3456678888999999999999999988999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+|+++++++..+.. |+..+.... .++|+++++||+|+.+. +.+..+++..++..++ .+++++||
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 147 (167)
T cd01867 82 VYDITDEKSFENIRN-WMRNIEEHASEDVERMLVGNKCDMEEK------------RVVSKEEGEALADEYG-IKFLETSA 147 (167)
T ss_pred EEECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeC
Confidence 999999999999885 888877653 57999999999999764 3356677788888877 68999999
Q ss_pred CCcccHHHHHHHHHHHHcC
Q psy10443 163 LTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~ 181 (195)
++|.|++++|+++.+.+..
T Consensus 148 ~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 148 KANINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998753
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=196.53 Aligned_cols=159 Identities=36% Similarity=0.602 Sum_probs=137.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
.+||+++|++|||||||+++|.++.+...+.+|....+.....+++..+.+.+||+||++++..++..++++++++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 47999999999999999999999988888888887776667778888889999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|++++.+++.+.. |...+... ..+.|+++|+||+|+... .....+...++...+ ++++++||+
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~-------------~~~~~~~~~~~~~~~-~~~~~~Sa~ 145 (162)
T cd04138 81 AINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAAR-------------TVSSRQGQDLAKSYG-IPYIETSAK 145 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-------------eecHHHHHHHHHHhC-CeEEEecCC
Confidence 9999999988874 66665543 357999999999998653 144566777777777 689999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRAV 179 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~ 179 (195)
+|.|++++|+++.+.+
T Consensus 146 ~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 146 TRQGVEEAFYTLVREI 161 (162)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=188.40 Aligned_cols=162 Identities=28% Similarity=0.530 Sum_probs=143.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
--+||+++|+.|+|||+|+++|+++-|++....|.+..+ -+++.+++.++++++||++||++|++.+.+|++.++++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 358999999999999999999999999888888886655 5788999999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|||++...++.-+.+ |+..+..+. ..+--++|+||.|+.+..+ +..+..++|+.... ..++++||
T Consensus 86 vydiscqpsfdclpe-wlreie~yan~kvlkilvgnk~d~~drre------------vp~qigeefs~~qd-myfletsa 151 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPE-WLREIEQYANNKVLKILVGNKIDLADRRE------------VPQQIGEEFSEAQD-MYFLETSA 151 (213)
T ss_pred EEecccCcchhhhHH-HHHHHHHHhhcceEEEeeccccchhhhhh------------hhHHHHHHHHHhhh-hhhhhhcc
Confidence 999999999999985 999998875 4577799999999988743 66677788887755 56899999
Q ss_pred CCcccHHHHHHHHHHHHc
Q psy10443 163 LTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~ 180 (195)
++.+|++++|..+.-.+.
T Consensus 152 kea~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 152 KEADNVEKLFLDLACRLI 169 (213)
T ss_pred cchhhHHHHHHHHHHHHH
Confidence 999999999999876654
|
|
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=200.17 Aligned_cols=162 Identities=35% Similarity=0.657 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+||+++|++|||||||+++|..+.+. ..+.+|.+..+. ..+.+++..+.+.+||+||++++...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998875 356677665543 3567788899999999999999998888999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
+|++++++++.+.. |+..+.... .++|+++++||+|+... +.+..++...++..++ .+++++||+
T Consensus 81 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~NK~Dl~~~------------~~~~~~~~~~l~~~~~-~~~~e~Sa~ 146 (191)
T cd04112 81 YDITNKASFDNIRA-WLTEIKEYAQEDVVIMLLGNKADMSGE------------RVVKREDGERLAKEYG-VPFMETSAK 146 (191)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEcccchhc------------cccCHHHHHHHHHHcC-CeEEEEeCC
Confidence 99999999998875 888887765 47899999999998754 3356677888888887 689999999
Q ss_pred CcccHHHHHHHHHHHHcCC
Q psy10443 164 TQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~ 182 (195)
+|.|++++|.+|.+.+...
T Consensus 147 ~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 147 TGLNVELAFTAVAKELKHR 165 (191)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988655
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=196.31 Aligned_cols=159 Identities=27% Similarity=0.493 Sum_probs=135.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
.+||+++|++|||||||+++++++.+...+.+|....+......++..+.+.+||+||++++..++..+++.++++++||
T Consensus 1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 37999999999999999999999998888888877666656667778899999999999999988888999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+++++++..+.. |...+... .+++|+++|+||+|+... +.+..+++..++..++ ++++++|
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~S 146 (165)
T cd04140 81 SVTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHK------------REVSSNEGAACATEWN-CAFMETS 146 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECcccccc------------CeecHHHHHHHHHHhC-CcEEEee
Confidence 9999999998875 66666543 267999999999999653 3355667777887777 6899999
Q ss_pred cCCcccHHHHHHHHHHH
Q psy10443 162 ALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~ 178 (195)
|++|.|++++|++|++.
T Consensus 147 A~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 147 AKTNHNVQELFQELLNL 163 (165)
T ss_pred cCCCCCHHHHHHHHHhc
Confidence 99999999999998753
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=196.78 Aligned_cols=160 Identities=28% Similarity=0.554 Sum_probs=139.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+++||+||++.+..++..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998888888876654 446677888999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC------CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC------PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~------~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (195)
|+++++++..+.. |+..+.... .+.|+++|+||+|+.+. +....++.+.++...+ +++++
T Consensus 81 D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~ 146 (168)
T cd04119 81 DVTDRQSFEALDS-WLKEMKQEGGPHGNMENIVVVVCANKIDLTKH------------RAVSEDEGRLWAESKG-FKYFE 146 (168)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhccccccCCCceEEEEEEchhcccc------------cccCHHHHHHHHHHcC-CeEEE
Confidence 9999999998874 888776653 46899999999999743 3356677778888887 78999
Q ss_pred eccCCcccHHHHHHHHHHHHc
Q psy10443 160 CSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
+||++|.|++++|++|.+.+.
T Consensus 147 ~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 147 TSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998875
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=194.50 Aligned_cols=155 Identities=25% Similarity=0.381 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|||||||+.++..+.+...+.|+. ..+...+.+++..+.+.+||++|++. ..+++.+|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 589999999999999999999988877666553 34456678899899999999999975 346688999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
++++++++.+.. |+..+.... +++|+++|+||+|+..... +.+..+++.++++..+.+++++|||++
T Consensus 75 ~~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----------~~v~~~~~~~~~~~~~~~~~~e~SAk~ 143 (158)
T cd04103 75 LENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNP----------RVIDDARARQLCADMKRCSYYETCATY 143 (158)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCC----------cccCHHHHHHHHHHhCCCcEEEEecCC
Confidence 999999999975 877776653 6799999999999853211 447777888899887667999999999
Q ss_pred cccHHHHHHHHHHH
Q psy10443 165 QRGLRQVFDEAVRA 178 (195)
Q Consensus 165 ~~~v~~~~~~l~~~ 178 (195)
|.|++++|..+.+.
T Consensus 144 ~~~i~~~f~~~~~~ 157 (158)
T cd04103 144 GLNVERVFQEAAQK 157 (158)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998864
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=194.75 Aligned_cols=159 Identities=31% Similarity=0.508 Sum_probs=134.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||+++++.+.+...+.+|.+..+ ...+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999998888777888876554 334556778899999999999999998899999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|++++++++.+.. |+..+.....++|+++|+||+|+... ... .+..++++... ++++++||++|
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~piiiv~nK~Dl~~~-------------~~~-~~~~~~~~~~~-~~~~e~Sa~~~ 144 (166)
T cd00877 81 DVTSRVTYKNVPN-WHRDLVRVCGNIPIVLCGNKVDIKDR-------------KVK-AKQITFHRKKN-LQYYEISAKSN 144 (166)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEEchhcccc-------------cCC-HHHHHHHHHcC-CEEEEEeCCCC
Confidence 9999999999874 98888877678999999999999632 122 23345555544 78999999999
Q ss_pred ccHHHHHHHHHHHHcC
Q psy10443 166 RGLRQVFDEAVRAVLR 181 (195)
Q Consensus 166 ~~v~~~~~~l~~~~~~ 181 (195)
.|++++|++|.+.+.+
T Consensus 145 ~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 145 YNFEKPFLWLARKLLG 160 (166)
T ss_pred CChHHHHHHHHHHHHh
Confidence 9999999999988764
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=193.66 Aligned_cols=159 Identities=25% Similarity=0.494 Sum_probs=133.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||++++..+.+...+.++..... .....+++..+.+++||++|++.+..++..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999888776666654433 345567888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|++++.++.++. .|+..+....++.|+++++||+|+... . .++...++...+ ++++++||++|
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~p~ivv~nK~Dl~~~--------------~-~~~~~~~~~~~~-~~~~~~Sa~~~ 143 (161)
T cd04124 81 DVTRKITYKNLS-KWYEELREYRPEIPCIVVANKIDLDPS--------------V-TQKKFNFAEKHN-LPLYYVSAADG 143 (161)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEECccCchh--------------H-HHHHHHHHHHcC-CeEEEEeCCCC
Confidence 999999998887 488888877778999999999998432 1 133445666665 68999999999
Q ss_pred ccHHHHHHHHHHHHcCC
Q psy10443 166 RGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 166 ~~v~~~~~~l~~~~~~~ 182 (195)
.|++++|+.+.+.+.+.
T Consensus 144 ~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 144 TNVVKLFQDAIKLAVSY 160 (161)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999887654
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=195.36 Aligned_cols=158 Identities=28% Similarity=0.566 Sum_probs=137.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeC--CEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVD--GIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
+||+++|.+|+|||||+++++++.+...+.+|.+..+ ...+.++ +..+.+++||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999988888888876554 3445555 677899999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||++++++++.+.. |+..+....+++|+++++||+|+... +.+..+++..+++.++ ++++++||+
T Consensus 81 v~d~~~~~s~~~l~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa~ 146 (162)
T cd04106 81 VFSTTDRESFEAIES-WKEKVEAECGDIPMVLVQTKIDLLDQ------------AVITNEEAEALAKRLQ-LPLFRTSVK 146 (162)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEEChhcccc------------cCCCHHHHHHHHHHcC-CeEEEEECC
Confidence 999999999998874 88888877789999999999999765 3356677888888887 699999999
Q ss_pred CcccHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRA 178 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~ 178 (195)
+|.|++++|++|.+.
T Consensus 147 ~~~~v~~l~~~l~~~ 161 (162)
T cd04106 147 DDFNVTELFEYLAEK 161 (162)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998764
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=195.03 Aligned_cols=161 Identities=35% Similarity=0.593 Sum_probs=138.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+.+||+++|++|+|||||++++.+..+...+.++....+.....+++..+.+++||+||++++..++..+++++|++++|
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 35899999999999999999999988888888888766666677888889999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
||++++.+++.+.. |...+... ..+.|+++++||+|+... +.+..++..++++.++ ++++++||
T Consensus 81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 146 (164)
T cd04145 81 FSVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQ------------RKVSREEGQELARKLK-IPYIETSA 146 (164)
T ss_pred EECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCcccccc------------ceecHHHHHHHHHHcC-CcEEEeeC
Confidence 99999999998875 66666543 357899999999998654 2255567778888877 68999999
Q ss_pred CCcccHHHHHHHHHHHH
Q psy10443 163 LTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~ 179 (195)
++|.|++++|++|++.+
T Consensus 147 ~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 147 KDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999998764
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=195.44 Aligned_cols=160 Identities=32% Similarity=0.565 Sum_probs=138.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|||||||++++.+..+...+.+|..+.+.....+++..+.+.+||+||++++..++..+++++|++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999888888888877666677788888999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 87 VVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
++++++++.+.. |...+... ..+.|+++++||+|+... +....++...+++.++ .+++++||++
T Consensus 81 ~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (164)
T smart00173 81 ITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESE------------RVVSTEEGKELARQWG-CPFLETSAKE 146 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc------------ceEcHHHHHHHHHHcC-CEEEEeecCC
Confidence 999999998875 66655443 247899999999998764 2255567778888877 7899999999
Q ss_pred cccHHHHHHHHHHHHc
Q psy10443 165 QRGLRQVFDEAVRAVL 180 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~ 180 (195)
|.|++++|++|.+.+.
T Consensus 147 ~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 147 RVNVDEAFYDLVREIR 162 (164)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998764
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=188.43 Aligned_cols=162 Identities=31% Similarity=0.515 Sum_probs=143.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccce-eEEe-CCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTV-DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
..++++++|++-+|||||++.|+.+.+++-.+||.+..+.. -+.+ .|..+++++|||+||++|++.+.+|+++.-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 57899999999999999999999999999999999766533 3333 688899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh--CCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH--CPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (195)
+|||++|.+|++++.+ |......+ .|..+ ..+|++|+|+... |.++.++++.|+..++ ..+++
T Consensus 87 lvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq------------RqVt~EEaEklAa~hg-M~FVE 152 (213)
T KOG0091|consen 87 LVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQ------------RQVTAEEAEKLAASHG-MAFVE 152 (213)
T ss_pred EEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhh------------ccccHHHHHHHHHhcC-ceEEE
Confidence 9999999999999996 88777665 34444 4788999999977 7799999999999999 78999
Q ss_pred eccCCcccHHHHHHHHHHHHc
Q psy10443 160 CSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
+||++|.|+++.|.-|.+.+.
T Consensus 153 TSak~g~NVeEAF~mlaqeIf 173 (213)
T KOG0091|consen 153 TSAKNGCNVEEAFDMLAQEIF 173 (213)
T ss_pred ecccCCCcHHHHHHHHHHHHH
Confidence 999999999999999988775
|
|
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=194.78 Aligned_cols=162 Identities=31% Similarity=0.536 Sum_probs=138.7
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
.+..+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45679999999999999999999999888777777765543 45667789999999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhh-----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHH-----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
++|||++++++++.+.. |...+... ..++|+++++||+|+.. +.+..++++++++.++..+
T Consensus 82 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~ 147 (170)
T cd04116 82 LLTFAVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVVLGNKNDIPE-------------RQVSTEEAQAWCRENGDYP 147 (170)
T ss_pred EEEEECCCHHHHHhHHH-HHHHHHHhcccccCCCCcEEEEEECccccc-------------cccCHHHHHHHHHHCCCCe
Confidence 99999999999998874 77655442 24689999999999863 3366778889999888678
Q ss_pred eEEeccCCcccHHHHHHHHHHH
Q psy10443 157 YMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
++++||++|.|+.++|..+++.
T Consensus 148 ~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 148 YFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 9999999999999999999864
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=195.03 Aligned_cols=161 Identities=30% Similarity=0.561 Sum_probs=136.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
||+++|.+|||||||+++|.++.+...+.||.+..+. ..+.+++..+.+++||+||+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999999999899999876653 566778889999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhh-CC-CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 87 VVSPSSFDNVTSKWYPELKHH-CP-DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~-~~-~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
+++++++..... |+..+... .+ +.|+++|+||+|+..... .....+++..+++.++ .+++++||++
T Consensus 82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~----------~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 149 (170)
T cd04108 82 LTDVASLEHTRQ-WLEDALKENDPSSVLLFLVGTKKDLSSPAQ----------YALMEQDAIKLAAEMQ-AEYWSVSALS 149 (170)
T ss_pred CcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEChhcCcccc----------ccccHHHHHHHHHHcC-CeEEEEECCC
Confidence 999999998874 88876543 33 578999999999865421 1134556778888887 5899999999
Q ss_pred cccHHHHHHHHHHHHc
Q psy10443 165 QRGLRQVFDEAVRAVL 180 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~ 180 (195)
|.|++++|+.+.+.+.
T Consensus 150 g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 150 GENVREFFFRVAALTF 165 (170)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998774
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=204.09 Aligned_cols=163 Identities=25% Similarity=0.428 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|||||||+++|+.+.+...+.+|..+.....+.+++..+.+++||++|++.|..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998888899876666777889999999999999999998888888999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhh----------hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 87 VVSPSSFDNVTSKWYPELKH----------HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~----------~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
++++++++.+.. |...+.. ...++|+++|+||+|+... +.+..+++.+++.....+.
T Consensus 81 v~~~~Sf~~i~~-~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~------------~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 81 LDNRESFEEVCR-LREQILETKSCLKNKTKENVKIPMVICGNKADRDFP------------REVQRDEVEQLVGGDENCA 147 (247)
T ss_pred CCCHHHHHHHHH-HHHHHHHhhcccccccccCCCCcEEEEEECccchhc------------cccCHHHHHHHHHhcCCCE
Confidence 999999998874 6666643 2357999999999999753 2356667777766544478
Q ss_pred eEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++++||++|.|++++|.+|.+....+
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~~~p 173 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLAKLP 173 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhccc
Confidence 99999999999999999999977543
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=193.07 Aligned_cols=170 Identities=71% Similarity=1.216 Sum_probs=145.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|.+|+|||||+++|++..+...+.++...........++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 68999999999999999999999887788888877777777888889999999999999998888888999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR 166 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (195)
++++.++......|+..+....++.|+++|+||+|+.......... ......+..++..+++..++..+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKL-EKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhc-ccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999999988777988888877789999999999998765432211 111233556778888888886699999999999
Q ss_pred cHHHHHHHHHH
Q psy10443 167 GLRQVFDEAVR 177 (195)
Q Consensus 167 ~v~~~~~~l~~ 177 (195)
|++++|.++.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=193.74 Aligned_cols=161 Identities=27% Similarity=0.487 Sum_probs=138.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
+.+||+++|++|+|||||++++..+.+...+.++....+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999888777777765433 3456778888899999999999999989999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|||++++++++.+.. |+..+... .+++|+++|+||+|+... +....+++..+++.++...++++||
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~e~Sa 148 (165)
T cd01864 82 AYDITRRSSFESVPH-WIEEVEKYGASNVVLLLIGNKCDLEEQ------------REVLFEEACTLAEKNGMLAVLETSA 148 (165)
T ss_pred EEECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcCCcEEEEEEC
Confidence 999999999998874 88888765 357999999999999765 3356677888888888778999999
Q ss_pred CCcccHHHHHHHHHHH
Q psy10443 163 LTQRGLRQVFDEAVRA 178 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~ 178 (195)
++|.|++++|+++.+.
T Consensus 149 ~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 149 KESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999999875
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=195.66 Aligned_cols=165 Identities=24% Similarity=0.404 Sum_probs=132.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCcccccc--------CCCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRL--------RPLSYPQ 77 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~--------~~~~~~~ 77 (195)
+||+|+|.+|||||||+++|.++.+...+.||+...+ .....+++..+.+.+||+||.+.+... ....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888886443 345667898899999999997654321 2345789
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhh----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHH----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
+|++|+|||++++++++.+.. |...+... .+++|+++|+||+|+... +.+..++.+.++.+..
T Consensus 81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~------------~~~~~~~~~~~~~~~~ 147 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRH------------RFAPRHVLSVLVRKSW 147 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECcccccc------------ccccHHHHHHHHHHhc
Confidence 999999999999999998874 76666543 367999999999999654 3355566666665443
Q ss_pred CceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
.++++++||++|.|++++|+.+++.+....+
T Consensus 148 ~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 148 KCGYLECSAKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHhhccCC
Confidence 4789999999999999999999998775544
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=192.24 Aligned_cols=160 Identities=30% Similarity=0.550 Sum_probs=138.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
.+||+++|.+|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++++++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999999888777777776544 45667788888999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhCC-CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHCP-DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
+|++++.++..+. .|+..+....+ ++|+++|+||+|+... +.+..++...+++..+ ++++++||+
T Consensus 83 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~pi~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 148 (165)
T cd01868 83 YDITKKQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTEEAKAFAEKNG-LSFIETSAL 148 (165)
T ss_pred EECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------ccCCHHHHHHHHHHcC-CEEEEEECC
Confidence 9999999999888 48888877654 5999999999998764 3356677788888776 789999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRAV 179 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~ 179 (195)
+|.|++++|+++.+.+
T Consensus 149 ~~~~v~~l~~~l~~~i 164 (165)
T cd01868 149 DGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998875
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=186.59 Aligned_cols=165 Identities=29% Similarity=0.578 Sum_probs=148.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
-.|||+++|..=+|||||+-+++.+.|...+..|....+ ...+.+.+....+.+|||+||++|+.+-+.|+++.+++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 468999999999999999999999999988888875554 6778888999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|||++|++||+.+.+ |...++... ..+-++||+||+|+.+. +.+..+++..++...+ ..++++||
T Consensus 92 VyDITDrdSFqKVKn-WV~Elr~mlGnei~l~IVGNKiDLEee------------R~Vt~qeAe~YAesvG-A~y~eTSA 157 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKN-WVLELRTMLGNEIELLIVGNKIDLEEE------------RQVTRQEAEAYAESVG-ALYMETSA 157 (218)
T ss_pred EEeccchHHHHHHHH-HHHHHHHHhCCeeEEEEecCcccHHHh------------hhhhHHHHHHHHHhhc-hhheeccc
Confidence 999999999999996 888887753 46889999999999877 6699999999999999 57999999
Q ss_pred CCcccHHHHHHHHHHHHcCCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+++.|+.++|+.|...+.+..
T Consensus 158 k~N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 158 KDNVGISELFESLTAKMIEHS 178 (218)
T ss_pred ccccCHHHHHHHHHHHHHHHh
Confidence 999999999999998876554
|
|
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=198.98 Aligned_cols=164 Identities=32% Similarity=0.559 Sum_probs=139.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEe-CCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTV-DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+ ++..+.+++||++|++.+..++..+++++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 358999999999999999999999988877777775443 334444 467789999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+|||+++++++.++.. |+..+.... ...|+++|+||+|+... +.+..++...+++.++ ++++++
T Consensus 81 lv~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~ 146 (211)
T cd04111 81 LVFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQ------------RQVTREEAEKLAKDLG-MKYIET 146 (211)
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEccccccc------------cccCHHHHHHHHHHhC-CEEEEE
Confidence 9999999999999985 888776542 35788999999999764 3467778888999888 799999
Q ss_pred ccCCcccHHHHHHHHHHHHcCC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
||++|.|++++|++|.+.+++.
T Consensus 147 Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 147 SARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999987644
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=191.21 Aligned_cols=162 Identities=32% Similarity=0.557 Sum_probs=140.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
++||+++|.+|||||||+++|.++.+...+.++....+.....+++..+.+.+||+||+++|..++..+++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 47999999999999999999999998888888887666666778888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|++++++++.... |...+... ..++|+++++||.|+... +....++...+++.++.++++++||+
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~SA~ 147 (168)
T cd04177 81 SVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDD------------RQVSREDGVSLSQQWGNVPFYETSAR 147 (168)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhcccc------------CccCHHHHHHHHHHcCCceEEEeeCC
Confidence 9999999998875 77766543 357999999999998654 33556667777888776789999999
Q ss_pred CcccHHHHHHHHHHHHc
Q psy10443 164 TQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~ 180 (195)
++.|++++|.++...+.
T Consensus 148 ~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 148 KRTNVDEVFIDLVRQII 164 (168)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987553
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=199.26 Aligned_cols=163 Identities=31% Similarity=0.529 Sum_probs=142.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
..+||+++|++|||||||+++|.+..+...+.+|.+..+ ...+.+++..+.+++||++|++++..++..++++++++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 458999999999999999999999988777778876554 4667788888999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|||++++++++.+.. |+..+.... .++|+++|+||+|+... +.+..++...++..++ ++++++||
T Consensus 91 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piiiv~nK~Dl~~~------------~~~~~~~~~~l~~~~~-~~~~e~SA 156 (216)
T PLN03110 91 VYDITKRQTFDNVQR-WLRELRDHADSNIVIMMAGNKSDLNHL------------RSVAEEDGQALAEKEG-LSFLETSA 156 (216)
T ss_pred EEECCChHHHHHHHH-HHHHHHHhCCCCCeEEEEEEChhcccc------------cCCCHHHHHHHHHHcC-CEEEEEeC
Confidence 999999999998874 888877654 57999999999998654 3466677888888776 79999999
Q ss_pred CCcccHHHHHHHHHHHHcC
Q psy10443 163 LTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~ 181 (195)
++|.|++++|+++.+.+.+
T Consensus 157 ~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 157 LEATNVEKAFQTILLEIYH 175 (216)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988754
|
|
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=197.96 Aligned_cols=168 Identities=28% Similarity=0.548 Sum_probs=144.6
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCcc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTD 79 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d 79 (195)
|.....+||+++|++|+|||||+++|+...+...+.+|....+ ...+.+++..+.+.+||++|++.+...+..+++.+|
T Consensus 1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad 80 (210)
T PLN03108 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 7777789999999999999999999999888777777765544 445677888899999999999999988899999999
Q ss_pred EEEEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 80 VFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
++++|||+++++++..+.. |+..+... .++.|+++++||+|+... +.+..++.+++++.++ ++++
T Consensus 81 ~~vlv~D~~~~~s~~~l~~-~~~~~~~~~~~~~piiiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~ 146 (210)
T PLN03108 81 GALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHG-LIFM 146 (210)
T ss_pred EEEEEEECCcHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCccc------------cCCCHHHHHHHHHHcC-CEEE
Confidence 9999999999999998874 77766544 367999999999999764 3467788889999887 6899
Q ss_pred EeccCCcccHHHHHHHHHHHHcCC
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++||+++.|++++|.++++.+++.
T Consensus 147 e~Sa~~~~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 147 EASAKTAQNVEEAFIKTAAKIYKK 170 (210)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999888653
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=196.46 Aligned_cols=155 Identities=30% Similarity=0.520 Sum_probs=133.5
Q ss_pred EcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCCh
Q psy10443 12 VGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSP 90 (195)
Q Consensus 12 ~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 90 (195)
+|++|||||||+++|+.+.+...+.+|.+..+ ...+.+++..+.+.+||++|+++|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888888886554 45567788899999999999999999999999999999999999999
Q ss_pred hcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHH
Q psy10443 91 SSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQ 170 (195)
Q Consensus 91 ~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 170 (195)
.++..+.. |+..+....+++|+++|+||+|+... .+..+. ..+++..+ +++++|||++|.|+++
T Consensus 81 ~S~~~i~~-w~~~i~~~~~~~piilvgNK~Dl~~~-------------~v~~~~-~~~~~~~~-~~~~e~SAk~~~~v~~ 144 (200)
T smart00176 81 VTYKNVPN-WHRDLVRVCENIPIVLCGNKVDVKDR-------------KVKAKS-ITFHRKKN-LQYYDISAKSNYNFEK 144 (200)
T ss_pred HHHHHHHH-HHHHHHHhCCCCCEEEEEECcccccc-------------cCCHHH-HHHHHHcC-CEEEEEeCCCCCCHHH
Confidence 99999874 99988887778999999999998542 133333 35666666 7899999999999999
Q ss_pred HHHHHHHHHcCC
Q psy10443 171 VFDEAVRAVLRP 182 (195)
Q Consensus 171 ~~~~l~~~~~~~ 182 (195)
+|.+|++.+.+.
T Consensus 145 ~F~~l~~~i~~~ 156 (200)
T smart00176 145 PFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=194.63 Aligned_cols=166 Identities=29% Similarity=0.518 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCC-Ccccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPG-EYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+||+|+|.+|||||||+++|+++.+.. .+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988864 6777876655 34677889999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
||++++++++.+. .|+..+....++.|+++|+||+|+..... ..+.+..+++..++..++ .+++++||++
T Consensus 81 ~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~~~--------~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 150 (193)
T cd04118 81 YDLTDSSSFERAK-FWVKELQNLEEHCKIYLCGTKSDLIEQDR--------SLRQVDFHDVQDFADEIK-AQHFETSSKT 150 (193)
T ss_pred EECCCHHHHHHHH-HHHHHHHhcCCCCCEEEEEEccccccccc--------ccCccCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 9999999998886 48888877667899999999999864321 012345567778888877 6899999999
Q ss_pred cccHHHHHHHHHHHHcCC
Q psy10443 165 QRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~~~ 182 (195)
|.|++++|+++.+.+.+.
T Consensus 151 ~~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 151 GQNVDELFQKVAEDFVSR 168 (193)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999877543
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=191.50 Aligned_cols=159 Identities=36% Similarity=0.547 Sum_probs=135.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccc-cccCCCCCCCccEEEEEEe
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY-DRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-~~~~~~~~~~~d~~i~v~d 86 (195)
||+++|++|+|||||+++++.+.+...+.++....+.....+++..+.+++||+||++.+ ......+++.+|++|+|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 689999999999999999999888888888876666666778889999999999999853 4456678899999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 87 VVSPSSFDNVTSKWYPELKHH---CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
++++++++.+.. |...+... ..++|+++|+||+|+... +.+..+++..+++.++ .+++++||+
T Consensus 81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa~ 146 (165)
T cd04146 81 ITDRSSFDEISQ-LKQLIREIKKRDREIPVILVGNKADLLHY------------RQVSTEEGEKLASELG-CLFFEVSAA 146 (165)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCchHHh------------CccCHHHHHHHHHHcC-CEEEEeCCC
Confidence 999999998874 77777664 347999999999998654 3466778888998888 789999999
Q ss_pred Cc-ccHHHHHHHHHHHHc
Q psy10443 164 TQ-RGLRQVFDEAVRAVL 180 (195)
Q Consensus 164 ~~-~~v~~~~~~l~~~~~ 180 (195)
+| .|++++|..+++.+.
T Consensus 147 ~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 147 EDYDGVHSVFHELCREVR 164 (165)
T ss_pred CCchhHHHHHHHHHHHHh
Confidence 99 599999999998664
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=190.40 Aligned_cols=162 Identities=28% Similarity=0.553 Sum_probs=139.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
.+||+++|.+|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++++|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999888777777765444 34566788888999999999999999888999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
+|++++++++.+.. |+..+... .++.|+++++||.|+... +.+..++...++...+ ++++++||+
T Consensus 84 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~pvivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~ 149 (168)
T cd01866 84 YDITRRETFNHLTS-WLEDARQHSNSNMTIMLIGNKCDLESR------------REVSYEEGEAFAKEHG-LIFMETSAK 149 (168)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeCC
Confidence 99999999999885 88877664 478999999999998754 3366677888888887 689999999
Q ss_pred CcccHHHHHHHHHHHHcC
Q psy10443 164 TQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~ 181 (195)
++.|++++|.++.+.+.+
T Consensus 150 ~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 150 TASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987753
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=190.81 Aligned_cols=164 Identities=22% Similarity=0.292 Sum_probs=135.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
.+.+||+++|++|||||||+++|+++.+. .++.||.+..+. ..+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35689999999999999999999999998 888998876653 4567788888999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
++|+|++++.+++.+.. |...+.. ..++|+++|+||+|+.+.. .....+..++++.++...++++|
T Consensus 82 llv~d~~~~~s~~~~~~-~~~~~~~-~~~~p~iiv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~S 147 (169)
T cd01892 82 CLVYDSSDPKSFSYCAE-VYKKYFM-LGEIPCLFVAAKADLDEQQ------------QRYEVQPDEFCRKLGLPPPLHFS 147 (169)
T ss_pred EEEEeCCCHHHHHHHHH-HHHHhcc-CCCCeEEEEEEcccccccc------------cccccCHHHHHHHcCCCCCEEEE
Confidence 99999999999988764 6665532 2379999999999986542 12223456677777744579999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|+.+.+.+..
T Consensus 148 a~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 148 SKLGDSSNELFTKLATAAQY 167 (169)
T ss_pred eccCccHHHHHHHHHHHhhC
Confidence 99999999999999998764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=189.57 Aligned_cols=158 Identities=27% Similarity=0.526 Sum_probs=136.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||+++|.++.+...+.++....+ .....+++..+.+++||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999888777777765443 345677888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|+++++++..+.. |+..+... .+++|+++++||+|+... +.+..+++..+++..+ ++++++||++
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (161)
T cd04113 81 DITNRTSFEALPT-WLSDARALASPNIVVILVGNKSDLADQ------------REVTFLEASRFAQENG-LLFLETSALT 146 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEEchhcchh------------ccCCHHHHHHHHHHcC-CEEEEEECCC
Confidence 9999999998874 87777654 478999999999999764 3366778888888888 8999999999
Q ss_pred cccHHHHHHHHHHH
Q psy10443 165 QRGLRQVFDEAVRA 178 (195)
Q Consensus 165 ~~~v~~~~~~l~~~ 178 (195)
+.|++++|.++++.
T Consensus 147 ~~~i~~~~~~~~~~ 160 (161)
T cd04113 147 GENVEEAFLKCARS 160 (161)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999875
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=189.43 Aligned_cols=161 Identities=30% Similarity=0.552 Sum_probs=137.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCcccc-ccCCCCCCCccEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYD-RLRPLSYPQTDVFL 82 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~-~~~~~~~~~~d~~i 82 (195)
+.+||+++|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+||++|++++. .++..+++++|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 358999999999999999999999888777777765443 4566778888999999999999886 56888899999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+|||++++++++.+.. |+..+.... .++|+++|+||+|+... +.+..++..+++.... ++++++
T Consensus 81 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~ 146 (170)
T cd04115 81 FVYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQ------------IQVPTDLAQRFADAHS-MPLFET 146 (170)
T ss_pred EEEECCCHHHHHhHHH-HHHHHHHhcCCCCCCEEEEEECccchhh------------cCCCHHHHHHHHHHcC-CcEEEE
Confidence 9999999999999974 888777643 57999999999998765 3366677888888876 789999
Q ss_pred ccCC---cccHHHHHHHHHHHH
Q psy10443 161 SALT---QRGLRQVFDEAVRAV 179 (195)
Q Consensus 161 Sa~~---~~~v~~~~~~l~~~~ 179 (195)
||++ +.|++++|..+++.+
T Consensus 147 Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 147 SAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred eccCCcCCCCHHHHHHHHHHHh
Confidence 9999 899999999998765
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=188.01 Aligned_cols=161 Identities=32% Similarity=0.618 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|+|||||++++.+..+...+.++....+ .....+++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999887766666665543 345667888889999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|++++++++.+.. |+..+.... +++|+++++||+|+... +....+.+..+++.++ ++++++|+++
T Consensus 81 d~~~~~s~~~~~~-~l~~~~~~~~~~~pivvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 146 (164)
T smart00175 81 DITNRESFENLKN-WLKELREYADPNVVIMLVGNKSDLEDQ------------RQVSREEAEAFAEEHG-LPFFETSAKT 146 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEEchhcccc------------cCCCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 9999999998875 888877654 68999999999998764 3356677888888887 7899999999
Q ss_pred cccHHHHHHHHHHHHcC
Q psy10443 165 QRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~~ 181 (195)
|.|++++++++.+.+.+
T Consensus 147 ~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 147 NTNVEEAFEELAREILK 163 (164)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999988754
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=187.41 Aligned_cols=160 Identities=30% Similarity=0.583 Sum_probs=138.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
++||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999988776777766544 45677888899999999999999998888999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
+|+++++++..... |+..+.... +++|+++++||+|+... +....++...++...+ ++++++||+
T Consensus 81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 146 (163)
T cd01860 81 YDITSEESFEKAKS-WVKELQRNASPNIIIALVGNKADLESK------------RQVSTEEAQEYADENG-LLFFETSAK 146 (163)
T ss_pred EECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc------------CcCCHHHHHHHHHHcC-CEEEEEECC
Confidence 99999999998874 877776654 77999999999998753 3355667778888887 789999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRAV 179 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~ 179 (195)
+|.|++++|++|.+.+
T Consensus 147 ~~~~v~~l~~~l~~~l 162 (163)
T cd01860 147 TGENVNELFTEIAKKL 162 (163)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999876
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=189.01 Aligned_cols=176 Identities=28% Similarity=0.454 Sum_probs=143.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
.||+++|.+|+|||||++++..+.+...+.|+....+.....+++..+.+.+||+||++++...+..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 68999999999999999999998887778888776666677788888899999999999999888889999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
+++..+++.+...|...+... ..+.|+++++||+|+... +....++...+++.++ .+++++||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 148 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQ------------RQVSTEEGKELAESWG-AAFLESSAREN 148 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhc------------CccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 999999998886444444432 357899999999998653 2244555667777777 68999999999
Q ss_pred ccHHHHHHHHHHHHcCCCccc--cCCCceeeC
Q psy10443 166 RGLRQVFDEAVRAVLRPEPVK--RRQRKCVII 195 (195)
Q Consensus 166 ~~v~~~~~~l~~~~~~~~~~~--~~~~~c~~~ 195 (195)
.|+.++|.++.+.+....... ..+++|.||
T Consensus 149 ~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (180)
T cd04137 149 ENVEEAFELLIEEIEKVENPLDPGQKKKCSIM 180 (180)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCCCCceeC
Confidence 999999999999776554322 334679886
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=190.31 Aligned_cols=163 Identities=37% Similarity=0.588 Sum_probs=149.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+.+||+++|.+|+|||+|..+|....|.+.|+||.++.+.....+++..+.+.++|++|++++..+...++++++++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHH-hhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 85 YSVVSPSSFDNVTSKWYPEL-KHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~-~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+++++.||+.+.. +...+ +.. ...+|+++|+||+|+... +.+..++++.++..++ ++++++||
T Consensus 82 ysitd~~SF~~~~~-l~~~I~r~~~~~~~PivlVGNK~Dl~~~------------R~V~~eeg~~la~~~~-~~f~E~Sa 147 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQ-LREQILRVKGRDDVPIILVGNKCDLERE------------RQVSEEEGKALARSWG-CAFIETSA 147 (196)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhCcCCCCEEEEEEcccchhc------------cccCHHHHHHHHHhcC-CcEEEeec
Confidence 99999999999986 55555 333 346899999999999886 5688999999999998 57999999
Q ss_pred CCcccHHHHHHHHHHHHcC
Q psy10443 163 LTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~ 181 (195)
+.+.+++++|..|++.+-.
T Consensus 148 k~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 148 KLNYNVDEVFYELVREIRL 166 (196)
T ss_pred cCCcCHHHHHHHHHHHHHh
Confidence 9999999999999997765
|
|
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=190.20 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=121.5
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.++.+||+++|++|||||||+++|..+.+. .+.||.+..+. ... ...+.+.+||+||++++..++..+++++|++|
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 357899999999999999999999987764 35666654432 222 34578889999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH--c--CCcee
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK--I--RAVKY 157 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~ 157 (195)
+|||++++.++.+....|...+... .+++|+++|+||+|+... +..+++..+... . ..+++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~ 147 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--------------MKPHEIQEKLGLTRIRDRNWYV 147 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--------------CCHHHHHHHcCCCccCCCcEEE
Confidence 9999999999988876455555443 467999999999998643 233444444321 1 12468
Q ss_pred EEeccCCcccHHHHHHHHHH
Q psy10443 158 MECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~ 177 (195)
+++||++|.|++++|.+|.+
T Consensus 148 ~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 148 QPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEeeCCCCCChHHHHHHHhc
Confidence 99999999999999999864
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=180.52 Aligned_cols=159 Identities=31% Similarity=0.607 Sum_probs=143.1
Q ss_pred EEcCCCCchHHHHHHhhcCCC-CCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCC
Q psy10443 11 VVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVV 88 (195)
Q Consensus 11 v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 88 (195)
++|++++|||+|+-++..+.| ..+..+|.+..+ ...+.+++.++++++||++||++|++.+..|++.+|+++++||++
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 689999999999999988876 466777776666 456788999999999999999999999999999999999999999
Q ss_pred ChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCccc
Q psy10443 89 SPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRG 167 (195)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (195)
+..|++.... |+..+.++. ..+.+.+++||+|+.++ +.+..++.+.++..++ +|++++||++|.|
T Consensus 82 nkasfdn~~~-wlsei~ey~k~~v~l~llgnk~d~a~e------------r~v~~ddg~kla~~y~-ipfmetsaktg~n 147 (192)
T KOG0083|consen 82 NKASFDNCQA-WLSEIHEYAKEAVALMLLGNKCDLAHE------------RAVKRDDGEKLAEAYG-IPFMETSAKTGFN 147 (192)
T ss_pred cchhHHHHHH-HHHHHHHHHHhhHhHhhhccccccchh------------hccccchHHHHHHHHC-CCceecccccccc
Confidence 9999999985 999999875 46889999999999887 6688899999999999 8999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q psy10443 168 LRQVFDEAVRAVLRPE 183 (195)
Q Consensus 168 v~~~~~~l~~~~~~~~ 183 (195)
++-.|..|.+.+.+.+
T Consensus 148 vd~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 148 VDLAFLAIAEELKKLK 163 (192)
T ss_pred HhHHHHHHHHHHHHhc
Confidence 9999999999876443
|
|
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=186.54 Aligned_cols=163 Identities=31% Similarity=0.582 Sum_probs=136.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||++++.+..+...+.++....+ .....+++..+.+.+||+||++.+..++..+++++|++|+|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999888777777765443 445677888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC-----CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC-----PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
|++++.+++... .|...+.... .++|+++++||+|+..+ +....++...+++..+.++++++
T Consensus 81 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 147 (172)
T cd01862 81 DVTNPKSFESLD-SWRDEFLIQASPSDPENFPFVVLGNKIDLEEK------------RQVSTKKAQQWCQSNGNIPYFET 147 (172)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCccCCCCceEEEEEECcccccc------------cccCHHHHHHHHHHcCCceEEEE
Confidence 999999988776 3766554432 37999999999999753 22556677788888876799999
Q ss_pred ccCCcccHHHHHHHHHHHHcCC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
|+++|.|++++|+++.+.+.+.
T Consensus 148 Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 148 SAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred ECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999987665
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=185.82 Aligned_cols=164 Identities=29% Similarity=0.460 Sum_probs=129.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|||||||+++|..+.++..+.++ ...+.....+++..+.+.+||+||++.+...+..++..+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 48999999999999999999999887654443 33334444566778899999999999888777788899999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC-ceeEEeccCCc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA-VKYMECSALTQ 165 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 165 (195)
++++++++.+...|...++...++.|+++|+||+|+.+..... ...++...+...+.. .+++++||++|
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~----------~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 149 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQA----------GLEEEMLPIMNEFREIETCVECSAKTL 149 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchh----------HHHHHHHHHHHHHhcccEEEEeccccc
Confidence 9999999998666888887766789999999999997643210 012233333344432 37999999999
Q ss_pred ccHHHHHHHHHHHHcC
Q psy10443 166 RGLRQVFDEAVRAVLR 181 (195)
Q Consensus 166 ~~v~~~~~~l~~~~~~ 181 (195)
.|++++|+.+.+.+.+
T Consensus 150 ~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 150 INVSEVFYYAQKAVLH 165 (166)
T ss_pred cCHHHHHHHHHHHhcC
Confidence 9999999999988765
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=185.26 Aligned_cols=159 Identities=31% Similarity=0.567 Sum_probs=132.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC--CCCCCcccceeecc-ceeEEe-CCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD--SFPGEYVPTVFDNY-SAPFTV-DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~--~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+||+++|++|||||||++++... .+..++.+|.+..+ .....+ .+..+.+.+||+||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 67788888875554 233444 367789999999999999988899999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|+|+++++++..+. .|+..+.....+.|+++|+||+|+... ..+...+.+.+...++ ++++++||
T Consensus 81 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 146 (164)
T cd04101 81 LVYDVSNKASFENCS-RWVNKVRTASKHMPGVLVGNKMDLADK------------AEVTDAQAQAFAQANQ-LKFFKTSA 146 (164)
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CeEEEEeC
Confidence 999999999998886 488888776677999999999998654 2245555666777776 68999999
Q ss_pred CCcccHHHHHHHHHHHH
Q psy10443 163 LTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~ 179 (195)
+++.|++++|+.+.+.+
T Consensus 147 ~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 147 LRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCCChHHHHHHHHHHh
Confidence 99999999999998865
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=192.02 Aligned_cols=158 Identities=29% Similarity=0.426 Sum_probs=130.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCC-CCccccee-eccceeEEeCCEEEEEEEEeCCCCccccccCCCCCC-CccEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVF-DNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYP-QTDVFLI 83 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~-~~d~~i~ 83 (195)
+||+++|++|||||||+++|..+.+. ..+.++.. +.....+.+++..+.+.+||+||++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999888775 66666665 44456677888889999999999982 33345666 9999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.+..++...++..++ ++++++|
T Consensus 79 V~d~td~~S~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e~S 144 (221)
T cd04148 79 VYSVTDRSSFERASE-LRIQLRRNRQLEDRPIILVGNKSDLARS------------REVSVQEGRACAVVFD-CKFIETS 144 (221)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhcccc------------ceecHHHHHHHHHHcC-CeEEEec
Confidence 999999999998875 777776543 57999999999998765 3366667778888777 6899999
Q ss_pred cCCcccHHHHHHHHHHHHc
Q psy10443 162 ALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~ 180 (195)
|+++.|++++|+++++.+.
T Consensus 145 A~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 145 AGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999875
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=183.34 Aligned_cols=158 Identities=32% Similarity=0.565 Sum_probs=133.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeec-cceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|.+|||||||++++++..+...+.++.... ....+.+++..+.+.+||+||++.+..++..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999988876666666544 3455667788889999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|++++++++.+.. |+..+.... .+.|+++++||+|+... +....++...+++..+ ++++++||++
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (161)
T cd01861 81 DITNRQSFDNTDK-WIDDVRDERGNDVIIVLVGNKTDLSDK------------RQVSTEEGEKKAKELN-AMFIETSAKA 146 (161)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEEEChhcccc------------CccCHHHHHHHHHHhC-CEEEEEeCCC
Confidence 9999999999874 777766543 46999999999999643 3355667777777777 7899999999
Q ss_pred cccHHHHHHHHHHH
Q psy10443 165 QRGLRQVFDEAVRA 178 (195)
Q Consensus 165 ~~~v~~~~~~l~~~ 178 (195)
+.|++++++++.+.
T Consensus 147 ~~~v~~l~~~i~~~ 160 (161)
T cd01861 147 GHNVKELFRKIASA 160 (161)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999875
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=190.51 Aligned_cols=164 Identities=30% Similarity=0.560 Sum_probs=137.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
..+||+|+|.+|||||||+++|+.+.+ ..+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++++|++|+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 468999999999999999999998876 35566665443 3456677888999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||++++++++.+...|...+... ..+.|+++|+||+|+... +.+..++...++...+ ++++++|
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------------~~i~~~~~~~~~~~~~-~~~~e~S 158 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE------------RDVSREEGMALAKEHG-CLFLECS 158 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------------CccCHHHHHHHHHHcC-CEEEEEe
Confidence 999999999999876677766543 346899999999998754 2355667777888877 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|+++.|++++|++|.+.+.+.
T Consensus 159 Ak~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 159 AKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999887644
|
|
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=183.33 Aligned_cols=160 Identities=33% Similarity=0.555 Sum_probs=136.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|||||||+++++...+...+.++....+.....+++..+.+.+||+||++.+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999999888888888877777777888888999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 87 VVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
++++.++..... |...+... ..++|+++|+||+|+... +.....+...+...++ .+++++||++
T Consensus 81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (164)
T cd04139 81 ITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDK------------RQVSSEEAANLARQWG-VPYVETSAKT 146 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEccccccc------------cccCHHHHHHHHHHhC-CeEEEeeCCC
Confidence 999999988876 55544443 357999999999998763 1244456667777777 6899999999
Q ss_pred cccHHHHHHHHHHHHc
Q psy10443 165 QRGLRQVFDEAVRAVL 180 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~ 180 (195)
|.|++++|+++.+.+.
T Consensus 147 ~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 147 RQNVEKAFYDLVREIR 162 (164)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998764
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=181.92 Aligned_cols=159 Identities=30% Similarity=0.604 Sum_probs=133.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|.+|+|||||+++|+++.+...+.++..... .....+.+..+.+.+||+||++.+..++..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999888766666664433 445666778889999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|++++++++.... |+..+.... .++|+++++||+|+... +.+..++..++.+..+ .+++++|+++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~~ 146 (162)
T cd04123 81 DITDADSFQKVKK-WIKELKQMRGNNISLVIVGNKIDLERQ------------RVVSKSEAEEYAKSVG-AKHFETSAKT 146 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 9999999988875 777776653 37999999999998754 2355566777777777 6899999999
Q ss_pred cccHHHHHHHHHHHH
Q psy10443 165 QRGLRQVFDEAVRAV 179 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~ 179 (195)
++|++++++++.+.+
T Consensus 147 ~~gi~~~~~~l~~~~ 161 (162)
T cd04123 147 GKGIEELFLSLAKRM 161 (162)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=184.12 Aligned_cols=163 Identities=33% Similarity=0.565 Sum_probs=144.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEe---------CCEEEEEEEEeCCCCccccccCCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTV---------DGIPVSLGLWDTAGQEDYDRLRPLSY 75 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~---------~~~~~~l~~~D~~G~~~~~~~~~~~~ 75 (195)
-+|.+.+|++||||||++.+++.+.|..+...|.+..+. +.+.+ .+..+.+++||++||++|++++..++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 368889999999999999999999999999999877764 33333 24668899999999999999999999
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
+.|=++++++|+++..|+.++.+ |+..+..+ ..+..+++++||+|+... +.++.+++..++.+++
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~------------R~Vs~~qa~~La~kyg 155 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQ------------RVVSEDQAAALADKYG 155 (219)
T ss_pred HhhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhh------------hhhhHHHHHHHHHHhC
Confidence 99999999999999999999997 99988764 578999999999999877 6688899999999999
Q ss_pred CceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+|+|++||-+|.|+++..+.+...+++.
T Consensus 156 -lPYfETSA~tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 156 -LPYFETSACTGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred -CCeeeeccccCcCHHHHHHHHHHHHHHH
Confidence 8999999999999999999888877644
|
|
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=180.43 Aligned_cols=157 Identities=36% Similarity=0.625 Sum_probs=133.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998876666777655443 34566788889999999999999988899999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|++++.+++.+.. |+..+... .++.|+++++||+|+... ....++...++...+ ++++++||+
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~~~-------------~~~~~~~~~~~~~~~-~~~~~~Sa~ 145 (161)
T cd01863 81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKENR-------------EVTREEGLKFARKHN-MLFIETSAK 145 (161)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCccccc-------------ccCHHHHHHHHHHcC-CEEEEEecC
Confidence 9999999998875 88877765 357999999999999733 245567778888876 789999999
Q ss_pred CcccHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRA 178 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~ 178 (195)
+|.|++++++.+.+.
T Consensus 146 ~~~gi~~~~~~~~~~ 160 (161)
T cd01863 146 TRDGVQQAFEELVEK 160 (161)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998875
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=187.27 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=121.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+++|.+|||||||++++..+.+. .+.||.+..+. .+. ...+.+++||+||++.+..+|..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 56799999999999999999999987775 45677655432 233 345778899999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc----CCceeE
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI----RAVKYM 158 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 158 (195)
|+|+++++++..+...+...+.. ..+++|++|++||+|+.... ..++......-. ..+.++
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--------------~~~~~~~~l~l~~~~~~~~~~~ 156 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQRHWYIQ 156 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--------------CHHHHHHHhCccccCCCceEEE
Confidence 99999999998887544444433 24679999999999986542 222222211100 113467
Q ss_pred EeccCCcccHHHHHHHHHHHHcCC
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++||++|+|++++|++|.+.+.++
T Consensus 157 ~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 157 STCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred eccCCCCCCHHHHHHHHHHHHhhc
Confidence 899999999999999999887653
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=186.16 Aligned_cols=166 Identities=18% Similarity=0.256 Sum_probs=122.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+++.+||+++|++|||||||++++..+.+.. +.||.+..+. .+.. ..+.+.+||+||++.+..++..+++++|++|
T Consensus 14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 3567999999999999999999998877754 5667654432 2333 4577889999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|+++++++......+...+.. ...+.|+++++||.|+............... ...+.. .+.++++|
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~---------~~~~~~-~~~~~~~S 159 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGL---------HSVRQR-NWYIQGCC 159 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCC---------CcccCC-cEEEEeee
Confidence 999999999998887645555443 2357899999999998653211110000000 001111 14577999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|++++|++|.+.+.+.
T Consensus 160 a~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 160 ATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999877653
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-32 Score=185.12 Aligned_cols=157 Identities=19% Similarity=0.228 Sum_probs=119.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+++|++|||||||++++..+.+. .+.||.+..+. .... ..+.+.+||+||++.+..++..+++++|++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 56799999999999999999999877764 46677655442 2333 34778899999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH-----HHcCCcee
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA-----NKIRAVKY 157 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 157 (195)
|+|+++++++....+.|...+... .+++|++||+||+|+.... ..+++.... .... +.+
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~-~~~ 151 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--------------KAAEITEKLGLHSIRDRN-WYI 151 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--------------CHHHHHHHhCccccCCCc-EEE
Confidence 999999999988876444444432 4679999999999986542 112221111 1112 457
Q ss_pred EEeccCCcccHHHHHHHHHHHH
Q psy10443 158 MECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
+++||++|.|++++|++|.+.+
T Consensus 152 ~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 152 QPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998765
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=7e-32 Score=170.35 Aligned_cols=164 Identities=26% Similarity=0.517 Sum_probs=148.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.-+|-+++|+-|+|||+|+++|+...|-...+.|.+..+ +..+.+.+.++++++||++|+++|+...++|++++.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 458999999999999999999999998888888887776 4567889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|||++.+..+.++.. |+...+.. +|+..+++++||.|+... +.+..+++.+|+.+.+ +-++++||
T Consensus 90 vyditrrstynhlss-wl~dar~ltnpnt~i~lignkadle~q------------rdv~yeeak~faeeng-l~fle~sa 155 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLESQ------------RDVTYEEAKEFAEENG-LMFLEASA 155 (215)
T ss_pred EEEehhhhhhhhHHH-HHhhhhccCCCceEEEEecchhhhhhc------------ccCcHHHHHHHHhhcC-eEEEEecc
Confidence 999999999999875 98887765 689999999999999877 6699999999999999 78999999
Q ss_pred CCcccHHHHHHHHHHHHcCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~ 182 (195)
++|.|+++.|..-.+.++..
T Consensus 156 ktg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 156 KTGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred cccCcHHHHHHHHHHHHHHh
Confidence 99999999999888887644
|
|
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-31 Score=179.80 Aligned_cols=157 Identities=36% Similarity=0.617 Sum_probs=135.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
||+++|++|||||||++++++..+...+.++..........+++..+.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999988888888888766666677787888999999999999988888999999999999999
Q ss_pred CChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 88 VSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
++++++..+.. |...+.... .++|+++++||+|+... +....+++..+...++ .+++++|++++
T Consensus 81 ~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~~~ 146 (160)
T cd00876 81 TDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENE------------RQVSKEEGKALAKEWG-CPFIETSAKDN 146 (160)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCccccc------------ceecHHHHHHHHHHcC-CcEEEeccCCC
Confidence 99999998875 555555443 48999999999998764 2356677888888877 78999999999
Q ss_pred ccHHHHHHHHHHH
Q psy10443 166 RGLRQVFDEAVRA 178 (195)
Q Consensus 166 ~~v~~~~~~l~~~ 178 (195)
.|++++|++|.+.
T Consensus 147 ~~i~~l~~~l~~~ 159 (160)
T cd00876 147 INIDEVFKLLVRE 159 (160)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999875
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-31 Score=183.58 Aligned_cols=161 Identities=27% Similarity=0.436 Sum_probs=131.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
||+++|.+|||||||+++|+.+.+...+.++........+.+++..+.+++||+||+..+..++..++..+|++|+|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999998887777887655556677888889999999999999998888999999999999999
Q ss_pred CChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 88 VSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
+++.+++.+.. |...+.... .++|+++++||+|+.... +.+..++..+........+++++||++|
T Consensus 81 ~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 148 (198)
T cd04147 81 DDPESFEEVER-LREEILEVKEDKFVPIVVVGNKADSLEEE-----------RQVPAKDALSTVELDWNCGFVETSAKDN 148 (198)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEcccccccc-----------ccccHHHHHHHHHhhcCCcEEEecCCCC
Confidence 99999998874 766665542 479999999999986531 2233334443333222267899999999
Q ss_pred ccHHHHHHHHHHHHc
Q psy10443 166 RGLRQVFDEAVRAVL 180 (195)
Q Consensus 166 ~~v~~~~~~l~~~~~ 180 (195)
.|++++|+++.+.+.
T Consensus 149 ~gv~~l~~~l~~~~~ 163 (198)
T cd04147 149 ENVLEVFKELLRQAN 163 (198)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999999765
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-31 Score=181.44 Aligned_cols=157 Identities=20% Similarity=0.275 Sum_probs=121.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
||+++|.+|||||||+++|.+..+. .+.||.+..+. .... ..+.+.+||+||++.+...+..+++++|++++|+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~-~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE-TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE-EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 6899999999999999999998764 36667654432 2333 457788999999999998999999999999999999
Q ss_pred CChhcHHHHHHhhHHHHh-hh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC-----CceeEEe
Q psy10443 88 VSPSSFDNVTSKWYPELK-HH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR-----AVKYMEC 160 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~-~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 160 (195)
++++++.++.. |+..+. .. ..+.|+++++||+|+... +..+++..+....+ .+.++++
T Consensus 77 s~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (169)
T cd04158 77 SHRDRVSEAHS-ELAKLLTEKELRDALLLIFANKQDVAGA--------------LSVEEMTELLSLHKLCCGRSWYIQGC 141 (169)
T ss_pred CcHHHHHHHHH-HHHHHhcChhhCCCCEEEEEeCcCcccC--------------CCHHHHHHHhCCccccCCCcEEEEeC
Confidence 99999998875 544443 32 356899999999998643 33444544443211 2468899
Q ss_pred ccCCcccHHHHHHHHHHHHcCCC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
||++|.|++++|++|.+.+....
T Consensus 142 Sa~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 142 DARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred cCCCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999998876543
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-30 Score=177.09 Aligned_cols=165 Identities=26% Similarity=0.496 Sum_probs=134.9
Q ss_pred CCC-CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeec-cceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCc
Q psy10443 1 MSS-GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78 (195)
Q Consensus 1 m~~-~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~ 78 (195)
|-. ...++|+++|++|+|||||++++..+.+...+.++.... ....+.+++..+.+.+||+||++.+...+..++..+
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 443 456899999999999999999999887766666665433 344567788889999999999999998888999999
Q ss_pred cEEEEEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
|++++|+|+++++++..+. .|+..+.... .++|+++++||+|+... +.+..+....+.+... .++
T Consensus 81 d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~i~v~NK~D~~~~------------~~i~~~~~~~~~~~~~-~~~ 146 (169)
T cd04114 81 NALILTYDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLAER------------REVSQQRAEEFSDAQD-MYY 146 (169)
T ss_pred CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------cccCHHHHHHHHHHcC-CeE
Confidence 9999999999999998776 4887776654 46999999999998654 2244555666666666 789
Q ss_pred EEeccCCcccHHHHHHHHHHHH
Q psy10443 158 MECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
+++||++|.|++++|++|.+.+
T Consensus 147 ~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 147 LETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998764
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=183.25 Aligned_cols=164 Identities=18% Similarity=0.300 Sum_probs=123.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEe-CCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTV-DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.+||+++|.+|||||||++++..+.+... .||.+... ...+.. ++..+.+.+||+||++.+..++..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998877543 45554332 222222 446688999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH--Hc---CCc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN--KI---RAV 155 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~ 155 (195)
+|+|+++++++..... |+..+... ..+.|+++++||+|+... ...++...+.. .. ..+
T Consensus 81 ~v~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd04152 81 FVVDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPNA--------------LSVSEVEKLLALHELSASTPW 145 (183)
T ss_pred EEEECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCcccc--------------CCHHHHHHHhCccccCCCCce
Confidence 9999999988887764 55554432 247999999999998643 22233333322 11 124
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
+++++||++|.|+++++++|.+.+.+.++
T Consensus 146 ~~~~~SA~~~~gi~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 146 HVQPACAIIGEGLQEGLEKLYEMILKRRK 174 (183)
T ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999998875554
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=182.29 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=122.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
.|+++|++|||||||+++|.+..+...+.||.+... ..+++..+.+.+||+||++.+..++..+++++|++++|||+
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 379999999999999999999888777888875432 23455568889999999999999999999999999999999
Q ss_pred CChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC---
Q psy10443 88 VSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT--- 164 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--- 164 (195)
+++.++..... |+..+....+++|+++|+||+|+.......... ...++..++++.+ +.++++||++
T Consensus 78 t~~~s~~~~~~-~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~--------~~~~~~~~~~~~~-~~~~~~Sa~~~~s 147 (164)
T cd04162 78 ADSERLPLARQ-ELHQLLQHPPDLPLVVLANKQDLPAARSVQEIH--------KELELEPIARGRR-WILQGTSLDDDGS 147 (164)
T ss_pred CCHHHHHHHHH-HHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHH--------HHhCChhhcCCCc-eEEEEeeecCCCC
Confidence 99998888774 655555444789999999999986543211100 0112344555555 7789998888
Q ss_pred ---cccHHHHHHHHHH
Q psy10443 165 ---QRGLRQVFDEAVR 177 (195)
Q Consensus 165 ---~~~v~~~~~~l~~ 177 (195)
++|++++|+.++.
T Consensus 148 ~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 148 PSRMEAVKDLLSQLIN 163 (164)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999998764
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=179.20 Aligned_cols=153 Identities=19% Similarity=0.246 Sum_probs=115.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|.+|||||||++++..+.+. .+.||.+.... .+.. ..+.+.+||+||++++..++..+++++|++|+|+|
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 58999999999999999999887775 46677654432 2333 35778899999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH-HHHHHH---HcCCceeEEec
Q psy10443 87 VVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ-GQKLAN---KIRAVKYMECS 161 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~S 161 (195)
++++.++..+...|...+.. ...+.|+++++||+|+.... ..++ ...+.. ....+.++++|
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~~~~S 142 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--------------SAAEVTDKLGLHSLRNRNWYIQATC 142 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--------------CHHHHHHHhCccccCCCCEEEEEee
Confidence 99999998887645444443 23568999999999986431 1111 111211 01124678999
Q ss_pred cCCcccHHHHHHHHHH
Q psy10443 162 ALTQRGLRQVFDEAVR 177 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~ 177 (195)
|++|+|++++|++|.+
T Consensus 143 ak~g~gv~~~~~~l~~ 158 (159)
T cd04150 143 ATSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCCHHHHHHHHhc
Confidence 9999999999999864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=175.49 Aligned_cols=157 Identities=34% Similarity=0.627 Sum_probs=133.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|.+|||||||++++.+..+...+.+|....+ ...+..++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999888776666665544 345666777789999999999999989999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|+++++++..+.. |+..+.... ++.|+++++||+|+..+ .....++...++...+ .+++++|+++
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~~ 146 (159)
T cd00154 81 DITNRESFENLDK-WLKELKEYAPENIPIILVGNKIDLEDQ------------RQVSTEEAQQFAKENG-LLFFETSAKT 146 (159)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEccccccc------------ccccHHHHHHHHHHcC-CeEEEEecCC
Confidence 9999999988885 888887765 68999999999999733 2255677888888766 7899999999
Q ss_pred cccHHHHHHHHHH
Q psy10443 165 QRGLRQVFDEAVR 177 (195)
Q Consensus 165 ~~~v~~~~~~l~~ 177 (195)
+.|+++++++|.+
T Consensus 147 ~~~i~~~~~~i~~ 159 (159)
T cd00154 147 GENVEELFQSLAE 159 (159)
T ss_pred CCCHHHHHHHHhC
Confidence 9999999999863
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-30 Score=181.09 Aligned_cols=165 Identities=29% Similarity=0.512 Sum_probs=137.3
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
.+...+||+++|++|||||||++++..+.+...+.+|.+..+. ..+..++..+.+.+||++|++.+..++..++.++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 4567899999999999999999999888888888888766553 344557788999999999999999888899999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+++|+|+++..++..+. .|+..+.....++|+++++||+|+.... ... +...+....+ +.++++
T Consensus 85 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-------------~~~-~~~~~~~~~~-~~~~e~ 148 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVP-NWHRDIVRVCENIPIVLVGNKVDVKDRQ-------------VKA-RQITFHRKKN-LQYYDI 148 (215)
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccCcccc-------------CCH-HHHHHHHHcC-CEEEEE
Confidence 99999999999999887 4888887666789999999999985431 222 2234556655 689999
Q ss_pred ccCCcccHHHHHHHHHHHHcCC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
|+++|.|+++.|.+|++.+...
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999987643
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=176.58 Aligned_cols=155 Identities=21% Similarity=0.289 Sum_probs=118.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.++|+++|++|||||||+++|.+..+ ..+.+|.+.. .....++ .+.+.+||+||++.++.++..+++++|++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ-IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 5678999999999999999999998754 3455555422 2234444 4678899999999998888999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHH-hh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH----cCCcee
Q psy10443 84 CYSVVSPSSFDNVTSKWYPEL-KH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK----IRAVKY 157 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~-~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 157 (195)
|+|++++.++..... |+..+ .. ...+.|+++|+||+|+.+.. ..+++..+... ...+++
T Consensus 88 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 152 (173)
T cd04154 88 VVDSSDRLRLDDCKR-ELKELLQEERLAGATLLILANKQDLPGAL--------------SEEEIREALELDKISSHHWRI 152 (173)
T ss_pred EEECCCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcccccCC--------------CHHHHHHHhCccccCCCceEE
Confidence 999999999888764 44443 22 23689999999999986541 22333333321 123689
Q ss_pred EEeccCCcccHHHHHHHHHH
Q psy10443 158 MECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~ 177 (195)
+++||++|.|++++|+++.+
T Consensus 153 ~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 153 QPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EeccCCCCcCHHHHHHHHhc
Confidence 99999999999999999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=173.18 Aligned_cols=156 Identities=21% Similarity=0.318 Sum_probs=117.9
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
..+.++|+++|.+|+|||||+++++.+.+.. +.+|.+..+ .....+ .+.+.+||+||++.+...+..+++++|+++
T Consensus 12 ~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 87 (174)
T cd04153 12 PRKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV-EEIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVI 87 (174)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce-EEEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 3467999999999999999999999887754 456655443 233344 467789999999999888999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHH-HHHH----HHcCCce
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQG-QKLA----NKIRAVK 156 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~ 156 (195)
+|+|+++++++......+...+... ..++|+++++||+|+.... ..++. ..+. +... ++
T Consensus 88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~--------------~~~~i~~~l~~~~~~~~~-~~ 152 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM--------------TPAEISESLGLTSIRDHT-WH 152 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC--------------CHHHHHHHhCcccccCCc-eE
Confidence 9999999998887765444444432 3579999999999986531 11221 1111 1222 57
Q ss_pred eEEeccCCcccHHHHHHHHHH
Q psy10443 157 YMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
++++||++|.|++++|++|.+
T Consensus 153 ~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 153 IQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EEecccCCCCCHHHHHHHHhc
Confidence 899999999999999999875
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=172.40 Aligned_cols=152 Identities=23% Similarity=0.250 Sum_probs=112.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC-CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS-FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+|+++|++|||||||+++|.+.. +...+.||.+.... .+ ....+.+.+||+||++++..++..+++++|++|+|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SF--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EE--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 58999999999999999999875 34556666653322 22 2345778899999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhh----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH---H-HcCCceeE
Q psy10443 87 VVSPSSFDNVTSKWYPELKHH----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA---N-KIRAVKYM 158 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~ 158 (195)
++++.++..... |+..+... ..++|+++++||+|+..... .++..... . ....++++
T Consensus 78 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--------------~~~~~~~l~~~~~~~~~~~~~ 142 (162)
T cd04157 78 SSDRLRLVVVKD-ELELLLNHPDIKHRRVPILFFANKMDLPDALT--------------AVKITQLLGLENIKDKPWHIF 142 (162)
T ss_pred CCcHHHHHHHHH-HHHHHHcCcccccCCCCEEEEEeCccccCCCC--------------HHHHHHHhCCccccCceEEEE
Confidence 999988877664 55444332 24799999999999865421 11111111 0 11124689
Q ss_pred EeccCCcccHHHHHHHHHH
Q psy10443 159 ECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~ 177 (195)
++||++|.|++++|++|.+
T Consensus 143 ~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 143 ASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EeeCCCCCchHHHHHHHhc
Confidence 9999999999999999864
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=169.34 Aligned_cols=159 Identities=23% Similarity=0.372 Sum_probs=123.2
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
..+.++|+++|.+||||||+++++..+.+. ...||.+... ..+.+++ +.+.+||++|+..++..|..++.++|++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCccccccc-ceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 368899999999999999999999976543 3556655443 2344555 55679999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH-----HcCCce
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN-----KIRAVK 156 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 156 (195)
||+|+++++.+.+....+...+... ..++|++|++||+|+..... .+++..... ....+.
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~--------------~~~i~~~l~l~~l~~~~~~~ 152 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMS--------------EEEIKEYLGLEKLKNKRPWS 152 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSST--------------HHHHHHHTTGGGTTSSSCEE
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcch--------------hhHHHhhhhhhhcccCCceE
Confidence 9999999999988876555555542 45899999999999876532 222222111 112367
Q ss_pred eEEeccCCcccHHHHHHHHHHHH
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
++.+||.+|+|+.+.++||.+.+
T Consensus 153 v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 153 VFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHhcC
Confidence 89999999999999999998864
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=171.68 Aligned_cols=158 Identities=20% Similarity=0.328 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEe-----CCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTV-----DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-----~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
+||+++|++|||||||+++|.++.+...+.+|.+..+. ....+ ++..+.+++||++|++.|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999998888888865443 23344 3577999999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhh--------------------CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCc
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHH--------------------CPDAPIILVGTKIDLREDRETLNLLSEQNLSPV 140 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~ 140 (195)
+|+|||+++++|++.+. .|+..+... ..++|+++|+||+|+.+.. .+
T Consensus 81 iIlVyDvtn~~Sf~~l~-~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r------------~~ 147 (202)
T cd04102 81 IILVHDLTNRKSSQNLQ-RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK------------ES 147 (202)
T ss_pred EEEEEECcChHHHHHHH-HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc------------cc
Confidence 99999999999999997 598887542 2468999999999997642 12
Q ss_pred cHH----HHHHHHHHcCCceeEEeccCCc----------ccHHHHHHHHHHH
Q psy10443 141 KRE----QGQKLANKIRAVKYMECSALTQ----------RGLRQVFDEAVRA 178 (195)
Q Consensus 141 ~~~----~~~~~~~~~~~~~~~~~Sa~~~----------~~v~~~~~~l~~~ 178 (195)
..+ ....++..++ .+.++.++.+. ..+..+|+.+++.
T Consensus 148 ~~~~~~~~~~~ia~~~~-~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (202)
T cd04102 148 SGNLVLTARGFVAEQGN-AEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred chHHHhhHhhhHHHhcC-CceEEEecCCcccccCCCccHHHHHHHHHHHHHh
Confidence 222 2445566777 56666665532 3355666666554
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-30 Score=173.53 Aligned_cols=157 Identities=17% Similarity=0.271 Sum_probs=117.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
+|+++|.+|||||||++++.+. +...+.||.+.. ...+..+ .+.+++||+||++.+..++..+++++|++|+|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999976 666777777554 2233443 46778999999999999999999999999999999
Q ss_pred CChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC-CceeEEeccCC
Q psy10443 88 VSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR-AVKYMECSALT 164 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~ 164 (195)
+++.++..+.. |+..+... ..++|+++++||+|+............. ....++.+.+ .+.++++||++
T Consensus 77 s~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~--------~l~~~~~~~~~~~~~~~~Sa~~ 147 (167)
T cd04161 77 SDDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYL--------SLEKLVNENKSLCHIEPCSAIE 147 (167)
T ss_pred CchhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhc--------CcccccCCCCceEEEEEeEcee
Confidence 99999988875 65555433 3579999999999997653222211111 1122232222 25788899999
Q ss_pred c------ccHHHHHHHHHH
Q psy10443 165 Q------RGLRQVFDEAVR 177 (195)
Q Consensus 165 ~------~~v~~~~~~l~~ 177 (195)
| .|+++.|+||..
T Consensus 148 g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 148 GLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCccccCHHHHHHHHhc
Confidence 8 899999999864
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-29 Score=169.00 Aligned_cols=151 Identities=19% Similarity=0.257 Sum_probs=112.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
||+++|++++|||||++++..+.+. .+.+|.+.... .... ..+.+++||+||++.+..++..++..+|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE-TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 6899999999999999999887664 34555543332 2223 346788999999999999999999999999999999
Q ss_pred CChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH-HHH----HHcCCceeEEec
Q psy10443 88 VSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ-KLA----NKIRAVKYMECS 161 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~S 161 (195)
+++.++......|...+... ..+.|+++++||+|+..... ..+.. .+. ...+ .+++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~--------------~~~i~~~~~~~~~~~~~-~~~~~~S 141 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS--------------EAEISEKLGLSELKDRT-WSIFKTS 141 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC--------------HHHHHHHhCccccCCCc-EEEEEee
Confidence 99888776655454444432 35799999999999865421 11111 111 1111 4699999
Q ss_pred cCCcccHHHHHHHHHH
Q psy10443 162 ALTQRGLRQVFDEAVR 177 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~ 177 (195)
|++|.|++++|++|++
T Consensus 142 a~~~~gi~~l~~~l~~ 157 (158)
T cd04151 142 AIKGEGLDEGMDWLVN 157 (158)
T ss_pred ccCCCCHHHHHHHHhc
Confidence 9999999999999875
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=171.39 Aligned_cols=158 Identities=23% Similarity=0.408 Sum_probs=119.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+..||+++|++|||||||++++.++.+. .+.+|.... ...+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~-~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT-SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 56899999999999999999999987763 455565433 34455555 566799999999988888889999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH-----------
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK----------- 151 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 151 (195)
|+|+++.+++......+...+... ..+.|+++++||+|+... +..++.+.+...
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 158 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA--------------VSEEELRQALGLYGTTTGKGVSL 158 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC--------------cCHHHHHHHhCcccccccccccc
Confidence 999999988887765344444322 357999999999998643 233344433321
Q ss_pred ----cCCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 152 ----IRAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 152 ----~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
...+++++|||++|+|++++|.+|.+.+
T Consensus 159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred cccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 1225689999999999999999998753
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=167.32 Aligned_cols=153 Identities=23% Similarity=0.331 Sum_probs=111.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC------CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF------PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
||+++|++|+|||||++++.+... ...+.+|....+ ..+.++ .+.+.+||+||++.+..++..+++.+|++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 689999999999999999986422 223334443333 234444 45677999999999998888999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH------cCC
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK------IRA 154 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 154 (195)
++|+|+++++++......+...+... ..++|+++++||+|+... ...++...+... ...
T Consensus 78 v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd04160 78 IYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--------------LSVEEIKEVFQDKAEEIGRRD 143 (167)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--------------CCHHHHHHHhccccccccCCc
Confidence 99999999888887765333333322 357999999999998654 222233333222 123
Q ss_pred ceeEEeccCCcccHHHHHHHHHH
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
++++++||++|.|+++++++|.+
T Consensus 144 ~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 144 CLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred eEEEEeeCCCCcCHHHHHHHHhc
Confidence 68999999999999999999865
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=166.40 Aligned_cols=152 Identities=22% Similarity=0.316 Sum_probs=112.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
+|+++|++|||||||+++|.++.+.. ..||.+..+. .... +..+.+.+||+||++.+...+..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 58999999999999999999987754 3455543322 2222 3457888999999999988888899999999999999
Q ss_pred CChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH------HHHHHcCCceeEEe
Q psy10443 88 VSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ------KLANKIRAVKYMEC 160 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 160 (195)
+++.++......+...+... ..+.|+++++||+|+.... ..+++. .++... .++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~-~~~~~~~ 142 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--------------TAEEITRRFKLKKYCSDR-DWYVQPC 142 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--------------CHHHHHHHcCCcccCCCC-cEEEEec
Confidence 99988888765343443332 3589999999999985431 111111 111112 2578999
Q ss_pred ccCCcccHHHHHHHHHH
Q psy10443 161 SALTQRGLRQVFDEAVR 177 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~ 177 (195)
||++|+|++++|++|.+
T Consensus 143 Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 143 SAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ccccCCChHHHHHHHhc
Confidence 99999999999999864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=167.54 Aligned_cols=168 Identities=17% Similarity=0.269 Sum_probs=117.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.++|+++|.+|||||||++++.++.+. .+.||.... .....+++ +.+.+||+||++.+...+..++.++|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPT-SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 57899999999999999999999987664 334444332 22333444 567799999999999899999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+|+++++++......+...+.. ...+.|+++++||+|+.......+.............. -....+...++++||
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~---~~~~~~~~~i~~~Sa 167 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSK---GKVGVRPLEVFMCSV 167 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccc---cccCCceeEEEEeec
Confidence 99999999888876534343332 23579999999999986432222111111111000000 000123367999999
Q ss_pred CCcccHHHHHHHHHHH
Q psy10443 163 LTQRGLRQVFDEAVRA 178 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~ 178 (195)
++|.|++++++||.+.
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999764
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=164.62 Aligned_cols=152 Identities=20% Similarity=0.267 Sum_probs=114.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
||+++|.+|||||||++++++..+ ..+.+|..... ....++ .+.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999998874 34445544332 223333 46777999999999999999999999999999999
Q ss_pred CChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH----HcCCceeEEecc
Q psy10443 88 VSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN----KIRAVKYMECSA 162 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa 162 (195)
++++++......+....... ..+.|+++++||+|+..... .++...... ....++++++||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS--------------VSELIEKLGLEKILGRRWHIQPCSA 142 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccC--------------HHHHHHhhChhhccCCcEEEEEeeC
Confidence 99999988875344443432 35899999999999876421 122222221 112368999999
Q ss_pred CCcccHHHHHHHHHH
Q psy10443 163 LTQRGLRQVFDEAVR 177 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~ 177 (195)
++|.|++++|++|.+
T Consensus 143 ~~~~gv~~~~~~l~~ 157 (158)
T cd00878 143 VTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCHHHHHHHHhh
Confidence 999999999999875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-28 Score=174.82 Aligned_cols=146 Identities=21% Similarity=0.289 Sum_probs=117.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeC-------------CEEEEEEEEeCCCCccccc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVD-------------GIPVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~~~D~~G~~~~~~ 69 (195)
...+||+++|+.|||||||+++|.++.+...+.+|.+..+ ...+.++ +..+.+++||++|++.|..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 4579999999999999999999999998888888886654 3344443 3568899999999999999
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhC-------------CCCcEEEEeeCCCcccchHhhhhhhhcC
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-------------PDAPIILVGTKIDLREDRETLNLLSEQN 136 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~vvv~nK~D~~~~~~~~~~~~~~~ 136 (195)
++..++++++++|+|||+++.++++.+. .|+..+.... .++|++||+||+|+........
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~-kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~------ 171 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQ-KWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRG------ 171 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccc------
Confidence 9999999999999999999999999997 4988887642 2589999999999965321000
Q ss_pred CCCccHHHHHHHHHHcCCce
Q psy10443 137 LSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~ 156 (195)
...+..+++++|+.+.+.++
T Consensus 172 ~s~~~~e~a~~~A~~~g~l~ 191 (334)
T PLN00023 172 SSGNLVDAARQWVEKQGLLP 191 (334)
T ss_pred cccccHHHHHHHHHHcCCCc
Confidence 00135688999999987544
|
|
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=154.75 Aligned_cols=164 Identities=17% Similarity=0.258 Sum_probs=125.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
+++++|+++|..|+||||++++|.+.. ++...||.+.... +..+ ..+++++||.+||...+..|..|+..+|++|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ik-tl~~--~~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIK-TLEY--KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeE-EEEe--cceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 568999999999999999999999765 3445555554432 3333 44677799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccH-HHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR-EQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~S 161 (195)
|+|.+|+..+++....+-..+.. ...+.|+++++||.|+..+...+. +.. -+...+++... ++++.||
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~---------i~~~~~L~~l~ks~~-~~l~~cs 159 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEE---------ISKALDLEELAKSHH-WRLVKCS 159 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHH---------HHHhhCHHHhccccC-ceEEEEe
Confidence 99999999998877645444443 346789999999999985532221 111 12333444444 7899999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
+.+|+++.+-+.|+...+.+
T Consensus 160 ~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 160 AVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred ccccccHHHHHHHHHHHHHH
Confidence 99999999999999987765
|
|
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-28 Score=160.28 Aligned_cols=167 Identities=18% Similarity=0.257 Sum_probs=130.7
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
...++.+|+++|..++||||++.+|..+++... .||.+.+.+ .+.+. ++++.+||.+||++++..|.+|+.+.+++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE-~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE-TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee-EEEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 356889999999999999999999998877443 888877755 33343 67888999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
|||+|.+|++.+.++.+.+...+.... .+.|+++.+||.|+...-...+....+. ...+.. ..+.+..+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~--------l~~l~~--~~w~iq~~ 158 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLG--------LHSLRS--RNWHIQST 158 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhh--------hhccCC--CCcEEeec
Confidence 999999999999998876766666553 6899999999999987643222111111 111111 22567889
Q ss_pred ccCCcccHHHHHHHHHHHHcCC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+|.+|+|+.+.++|+.+.+...
T Consensus 159 ~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 159 CAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccccccHHHHHHHHHHHHhcc
Confidence 9999999999999999887653
|
|
| >KOG4252|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-29 Score=166.28 Aligned_cols=163 Identities=28% Similarity=0.473 Sum_probs=147.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.-+|++++|+.++||||++++++.+.|...|..|.+..+. ....+++..+++.+||++|+++|......|++++.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 35689999999999999999999999999999989876653 44566777788899999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|++.+|..||+...+ |...+......+|.++|-||+|+.++. .+..++++.+++.+. ..++.+|+
T Consensus 98 LVFSTTDr~SFea~~~-w~~kv~~e~~~IPtV~vqNKIDlveds------------~~~~~evE~lak~l~-~RlyRtSv 163 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLE-WYNKVQKETERIPTVFVQNKIDLVEDS------------QMDKGEVEGLAKKLH-KRLYRTSV 163 (246)
T ss_pred EEEecccHHHHHHHHH-HHHHHHHHhccCCeEEeeccchhhHhh------------hcchHHHHHHHHHhh-hhhhhhhh
Confidence 9999999999999985 999999988999999999999999874 477888999999888 68999999
Q ss_pred CCcccHHHHHHHHHHHHc
Q psy10443 163 LTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~ 180 (195)
+...|+..+|..|++.+.
T Consensus 164 ked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 164 KEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 999999999999998765
|
|
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-29 Score=156.73 Aligned_cols=163 Identities=19% Similarity=0.288 Sum_probs=137.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
.++.+.++|..++|||||++....+.+.+...||.+.+.. .+..-.+.+.+||.|||++|+++|..|++.++++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 4678999999999999999999999888888888877755 3455567778999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
+|+++++.++...+.+...+.+. ..++|+++++||.|+..+...+...+...+..+.+.+ +.+|.+|++
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdRE----------vcC~siSck 165 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDRE----------VCCFSISCK 165 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccce----------EEEEEEEEc
Confidence 99999999988877677776654 3689999999999999887766666665555554443 678999999
Q ss_pred CcccHHHHHHHHHHHHc
Q psy10443 164 TQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~ 180 (195)
+..|++.+..||++...
T Consensus 166 e~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 166 EKVNIDITLDWLIEHSK 182 (186)
T ss_pred CCccHHHHHHHHHHHhh
Confidence 99999999999988643
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-27 Score=163.02 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=110.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC-------CCCCccccee------ecc---ceeEEe---CCEEEEEEEEeCCCCcccc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS-------FPGEYVPTVF------DNY---SAPFTV---DGIPVSLGLWDTAGQEDYD 68 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~-------~~~~~~~t~~------~~~---~~~~~~---~~~~~~l~~~D~~G~~~~~ 68 (195)
+|+++|++++|||||+++|++.. +...+.++.. ..+ .....+ ++..+.+.+||+||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998731 1122222211 111 111222 5667889999999999998
Q ss_pred ccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHH
Q psy10443 69 RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKL 148 (195)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (195)
..+..+++.+|++|+|+|+++..+.+... .|..... .++|+++++||+|+.... ..+...++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~--------------~~~~~~~~ 143 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLA-NFYLALE---NNLEIIPVINKIDLPSAD--------------PERVKQQI 143 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHH-HHHHHHH---cCCCEEEEEECCCCCcCC--------------HHHHHHHH
Confidence 88888999999999999999876665554 2433332 378999999999985431 11222344
Q ss_pred HHHcCC--ceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 149 ANKIRA--VKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 149 ~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
++.++. ..++++||++|.|++++|++|.+.+..
T Consensus 144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 144 EDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred HHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 444442 248999999999999999999987643
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=158.98 Aligned_cols=157 Identities=20% Similarity=0.304 Sum_probs=115.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
.|+++|++|+|||||++++.+..+...+.+|.+.... ....++ +.+.+||+||++.+...+..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 3899999999999999999999888888887765543 233333 6788999999999999899999999999999999
Q ss_pred CChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcc
Q psy10443 88 VSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR 166 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (195)
++..++......+...+... ..++|+++++||+|+............... ..... ..++++++|+++|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~Sa~~~~ 147 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNL---------KSITD-REVSCYSISCKEKT 147 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCc---------ccccC-CceEEEEEEeccCC
Confidence 99888877664333333322 357899999999998654211100000000 00011 22578999999999
Q ss_pred cHHHHHHHHHH
Q psy10443 167 GLRQVFDEAVR 177 (195)
Q Consensus 167 ~v~~~~~~l~~ 177 (195)
|+++++++|.+
T Consensus 148 gi~~l~~~l~~ 158 (159)
T cd04159 148 NIDIVLDWLIK 158 (159)
T ss_pred ChHHHHHHHhh
Confidence 99999999875
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=157.37 Aligned_cols=142 Identities=30% Similarity=0.492 Sum_probs=120.5
Q ss_pred CCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh
Q psy10443 29 DSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH 107 (195)
Q Consensus 29 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 107 (195)
+.|.+++.||.+..+ ...+.+++..+.+.|||+||++++..++..+++++|++|+|||++++++++.+. .|+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~-~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHH-HHHHHHHHh
Confidence 456778888987555 456788899999999999999999999999999999999999999999999987 488776554
Q ss_pred -CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 108 -CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 108 -~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
.+++|+++|+||+|+... +.+..+++..++..++ +.++++||++|.|++++|.+|.+.+.+...
T Consensus 82 ~~~~~piilVgNK~DL~~~------------~~v~~~e~~~~~~~~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~ 146 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDL------------RKVTYEEGMQKAQEYN-TMFHETSAKAGHNIKVLFKKIAAKLPNLDN 146 (176)
T ss_pred cCCCCeEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 467999999999999653 3366777888888887 579999999999999999999999876443
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-26 Score=155.14 Aligned_cols=154 Identities=19% Similarity=0.219 Sum_probs=103.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCC-cccceeeccceeEEeCCEEEEEEEEeCCCCccccccCC---------CCCCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGE-YVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRP---------LSYPQ 77 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~---------~~~~~ 77 (195)
+|+++|.+|+|||||+++|++..+... +..++.......... ..+.+.+|||||+........ .....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 799999999999999999999766322 222221111111222 346778999999743211000 01123
Q ss_pred ccEEEEEEeCCChhcH--HHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 78 TDVFLICYSVVSPSSF--DNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
+|++++|+|++++.++ .... .|+..+.....+.|+++++||+|+..... .. +...+... +..
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~-~~~~~l~~~~~~~pvilv~NK~Dl~~~~~------------~~--~~~~~~~~-~~~ 143 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQL-SLFEEIKPLFKNKPVIVVLNKIDLLTFED------------LS--EIEEEEEL-EGE 143 (168)
T ss_pred cCcEEEEEeCCcccccchHHHH-HHHHHHHhhcCcCCeEEEEEccccCchhh------------HH--HHHHhhhh-ccC
Confidence 6899999999987653 3433 47777766556899999999999976432 11 13333333 347
Q ss_pred eeEEeccCCcccHHHHHHHHHHHH
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
+++++||++|.|++++++++.+.+
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 144 EVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ceEEEEecccCCHHHHHHHHHHHh
Confidence 899999999999999999999876
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-26 Score=162.41 Aligned_cols=180 Identities=34% Similarity=0.467 Sum_probs=139.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccce-eEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+..+||+++|++|||||||+++|.++.+...+.+|....+.. .....+..+.+.+||++|+++++.++..++.++++++
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 345999999999999999999999999998899887666543 3344444888999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc--CCceeEE
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI--RAVKYME 159 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 159 (195)
+++|.++..+..+....|...+.... .+.|+++++||+|+...............+.............. ....+++
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence 99999997777777777999988876 47999999999999887654433322211112222222222211 2234899
Q ss_pred eccC--CcccHHHHHHHHHHHHcCCC
Q psy10443 160 CSAL--TQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 160 ~Sa~--~~~~v~~~~~~l~~~~~~~~ 183 (195)
+|++ ++.++.++|..+.+.+....
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHHhh
Confidence 9999 99999999999999886543
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-26 Score=156.58 Aligned_cols=160 Identities=20% Similarity=0.324 Sum_probs=112.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.++|+++|++|||||||++++.+..+. .+.++.+... ..+..++ ..+.+||+||+..+...+..+++++|++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 46799999999999999999999987653 3444444222 2334454 456699999999888888888999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+|+++..++......+...+... ..++|+++++||+|+................. + ....++++++||
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~--------~--~~~~~~~~~~Sa 157 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHD--------L--RDRTWHIQACSA 157 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcc--------c--CCCeEEEEEeEC
Confidence 999999888877664344444332 34799999999999865421111100000000 0 001135789999
Q ss_pred CCcccHHHHHHHHHH
Q psy10443 163 LTQRGLRQVFDEAVR 177 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~ 177 (195)
++|+|++++|++|.+
T Consensus 158 ~~~~gi~~~~~~l~~ 172 (173)
T cd04155 158 KTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999999875
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=151.68 Aligned_cols=157 Identities=34% Similarity=0.498 Sum_probs=121.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
++||+++|.+|+|||||++++....+...+.++...... ..+..++..+.+.+||+||+..+...+..+++.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 479999999999999999999998876666666655443 3456777778888999999999988888888999999999
Q ss_pred EeCCCh-hcHHHHHHhhHHHHhhhCC-CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 85 YSVVSP-SSFDNVTSKWYPELKHHCP-DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 85 ~d~~~~-~s~~~~~~~~~~~~~~~~~-~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|+... .++......|...+..... +.|+++++||+|+.... . ...........+..+++++||
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~~~~~~~~sa 146 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-------------L-KTHVAFLFAKLNGEPIIPLSA 146 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-------------h-hHHHHHHHhhccCCceEEeec
Confidence 999877 6666555345555555444 89999999999997642 1 123333344445567999999
Q ss_pred CCcccHHHHHHHHH
Q psy10443 163 LTQRGLRQVFDEAV 176 (195)
Q Consensus 163 ~~~~~v~~~~~~l~ 176 (195)
+++.|+++++.+|.
T Consensus 147 ~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 147 ETGKNIDSAFKIVE 160 (161)
T ss_pred CCCCCHHHHHHHhh
Confidence 99999999999864
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-26 Score=155.27 Aligned_cols=156 Identities=21% Similarity=0.195 Sum_probs=107.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCcc----ccccCCCC---CCCcc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED----YDRLRPLS---YPQTD 79 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~----~~~~~~~~---~~~~d 79 (195)
+|+++|.+|||||||+++|.+.... ..+..++.........+++. ..+.+||+||... ...+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999975431 12222322222223333332 4677999999642 12222233 34699
Q ss_pred EEEEEEeCCCh-hcHHHHHHhhHHHHhhhC---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 80 VFLICYSVVSP-SSFDNVTSKWYPELKHHC---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
++++|+|++++ ++++... .|.+.+.... .+.|+++|+||+|+..... ..+....+.......
T Consensus 81 ~vi~v~D~~~~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~ 146 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYK-TIRNELELYNPELLEKPRIVVLNKIDLLDEEE-------------LFELLKELLKELWGK 146 (170)
T ss_pred EEEEEEecCCCCCHHHHHH-HHHHHHHHhCccccccccEEEEEchhcCCchh-------------hHHHHHHHHhhCCCC
Confidence 99999999998 6777776 4777766543 3689999999999866532 123344444543336
Q ss_pred eeEEeccCCcccHHHHHHHHHHH
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
+++++||+++.|++++|+++.+.
T Consensus 147 ~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 147 PVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CEEEEecCCCCCHHHHHHHHHhh
Confidence 79999999999999999999875
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=153.75 Aligned_cols=135 Identities=25% Similarity=0.301 Sum_probs=99.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCc-----cccccCCCCCCCccEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE-----DYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~-----~~~~~~~~~~~~~d~~i 82 (195)
||+++|++|||||||+++|.+..+. +.+|.. ..+.. .+||+||+. .+..+.. .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~------~~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA------VEYND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee------EEEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999987542 233321 12222 589999972 3333333 478999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|+|++++.++... .|.... ..|+++++||+|+.+.. ...++..++++..+..+++++||
T Consensus 68 lv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~Sa 127 (142)
T TIGR02528 68 LVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEAD-------------VDIERAKELLETAGAEPIFEISS 127 (142)
T ss_pred EEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCcc-------------cCHHHHHHHHHHcCCCcEEEEec
Confidence 99999999887552 254432 24999999999986421 33455677777776558999999
Q ss_pred CCcccHHHHHHHHH
Q psy10443 163 LTQRGLRQVFDEAV 176 (195)
Q Consensus 163 ~~~~~v~~~~~~l~ 176 (195)
++|.|++++|+++.
T Consensus 128 ~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 128 VDEQGLEALVDYLN 141 (142)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999999874
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-26 Score=153.32 Aligned_cols=157 Identities=18% Similarity=0.106 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC---CCCCcccc-eeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS---FPGEYVPT-VFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~t-~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.|+++|.+|||||||+++|++.. +..++.++ +.........+.+ ...+.+||+||++++......+++++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999999642 22222222 2111122333431 356779999999988766667788999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc--CCceeEEe
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI--RAVKYMEC 160 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 160 (195)
+|+|+++....+... .+..+... ...|+++++||+|+....... ...++..++.... ...+++++
T Consensus 80 ~V~d~~~~~~~~~~~--~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 146 (164)
T cd04171 80 LVVAADEGIMPQTRE--HLEILELL-GIKRGLVVLTKADLVDEDWLE----------LVEEEIRELLAGTFLADAPIFPV 146 (164)
T ss_pred EEEECCCCccHhHHH--HHHHHHHh-CCCcEEEEEECccccCHHHHH----------HHHHHHHHHHHhcCcCCCcEEEE
Confidence 999998732111111 11222221 124999999999997542100 1122333333332 33689999
Q ss_pred ccCCcccHHHHHHHHHH
Q psy10443 161 SALTQRGLRQVFDEAVR 177 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~ 177 (195)
||+++.|+++++..+.+
T Consensus 147 Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 147 SAVTGEGIEELKEYLDE 163 (164)
T ss_pred eCCCCcCHHHHHHHHhh
Confidence 99999999999998764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-25 Score=165.40 Aligned_cols=161 Identities=18% Similarity=0.241 Sum_probs=111.4
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCcc-ccccCC-----
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED-YDRLRP----- 72 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~-~~~~~~----- 72 (195)
|++.+.++|+++|.+|||||||+++|++..+. .....|+.......+..++.+ +.||||||... +..+..
T Consensus 47 ~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~q--i~~~DTpG~~~~~~~l~~~~~r~ 124 (339)
T PRK15494 47 MSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQ--VILYDTPGIFEPKGSLEKAMVRC 124 (339)
T ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeE--EEEEECCCcCCCcccHHHHHHHH
Confidence 45567789999999999999999999987653 122334444444555666654 56999999743 222211
Q ss_pred --CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 73 --LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 73 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
.++.++|++++|+|.++ ++......|+..+... +.|.++|+||+|+.... ..+..++..
T Consensus 125 ~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~---------------~~~~~~~l~ 185 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESKY---------------LNDIKAFLT 185 (339)
T ss_pred HHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcccc---------------HHHHHHHHH
Confidence 24679999999999765 3444433455655543 56778899999985421 223444444
Q ss_pred Hc-CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 151 KI-RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 151 ~~-~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.. ....++++||++|.|+++++++|.+.+.+.
T Consensus 186 ~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 186 ENHPDSLLFPISALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred hcCCCcEEEEEeccCccCHHHHHHHHHHhCCCC
Confidence 33 235799999999999999999999987654
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-25 Score=163.71 Aligned_cols=162 Identities=19% Similarity=0.186 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc----ccC---CCCCCCc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD----RLR---PLSYPQT 78 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~----~~~---~~~~~~~ 78 (195)
..|+++|.||||||||++++++... ...|+.|+.......+.+.+ ...+.+||+||..+-. .+. ...++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 3789999999999999999997542 24555566554444455522 2346699999964211 122 2245679
Q ss_pred cEEEEEEeCCChhcHHHHHHhhHHHHhhhC---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHC---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
+++++|+|+++.++++... .|...+..+. .+.|+++|+||+|+..... ...+....+....+ .
T Consensus 238 ~vlI~ViD~s~~~s~e~~~-~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~------------~~~~~~~~~~~~~~-~ 303 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYK-TIRNELEKYSPELADKPRILVLNKIDLLDEEE------------EREKRAALELAALG-G 303 (335)
T ss_pred CEEEEEEcCCCCCCHHHHH-HHHHHHHHhhhhcccCCeEEEEECcccCCchh------------HHHHHHHHHHHhcC-C
Confidence 9999999999888887776 4877777653 3689999999999875432 22223444444454 6
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+++++||++++|+++++++|.+.+.+.+
T Consensus 304 ~i~~iSAktg~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 304 PVFLISAVTGEGLDELLRALWELLEEAR 331 (335)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhhh
Confidence 7999999999999999999999876543
|
|
| >KOG0071|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-25 Score=140.24 Aligned_cols=163 Identities=18% Similarity=0.254 Sum_probs=127.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.++++|+.+|..++||||++..|.-+.. ....||++.+.. . +.-+++++++||++|++..+.+|++|+....++||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnve-t--VtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE-T--VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEE-E--EEeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 5789999999999999999999997654 456677766654 2 33356788899999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+|..+.+..+++.+.+...+.+. ..+.|++|.+||.|+..+..+.+..+-.++. . ++ ...+.+.++++
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe--------~-~r-~~~W~vqp~~a 160 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELE--------R-IR-DRNWYVQPSCA 160 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccc--------c-cc-CCccEeecccc
Confidence 999999999999887777777653 5689999999999998874333321111111 1 11 12256788999
Q ss_pred CCcccHHHHHHHHHHHHc
Q psy10443 163 LTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~ 180 (195)
.+|+|+.+-|.||...+.
T Consensus 161 ~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred ccchhHHHHHHHHHhhcc
Confidence 999999999999987654
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-25 Score=171.03 Aligned_cols=160 Identities=18% Similarity=0.217 Sum_probs=114.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcc----------ccccC-
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED----------YDRLR- 71 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~----------~~~~~- 71 (195)
..++|+++|.+|||||||+++|++... .....+|+.+.....+.+++..+. +|||||..+ +..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~--l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWR--FVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEE--EEECCCccccccccchHHHHHHHHH
Confidence 468999999999999999999998753 345556666666666777777664 999999532 22221
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
..+++.+|++++|+|++++.+.++.. ++..+.. .+.|+++|+||+|+....... ...++.......
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~--~~~~~~~--~~~piIiV~NK~Dl~~~~~~~----------~~~~~i~~~l~~ 353 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR--VLSMVIE--AGRALVLAFNKWDLVDEDRRY----------YLEREIDRELAQ 353 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH--HHHHHHH--cCCCEEEEEECcccCChhHHH----------HHHHHHHHhccc
Confidence 23578999999999999988887764 4444443 378999999999997532110 111122221122
Q ss_pred cCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
....+++++||++|.|++++|+.+.+.+.
T Consensus 354 ~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 354 VPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 23367899999999999999999988764
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=157.73 Aligned_cols=155 Identities=15% Similarity=0.076 Sum_probs=109.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc--------cCCCCCCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR--------LRPLSYPQ 77 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~--------~~~~~~~~ 77 (195)
+|+++|.+|||||||+|+|++..+. .....|+..........++ ..+.||||||...... ....++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999997643 3444455544433333333 3567999999654321 12345789
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
+|++++|+|+++..+.. ..++..+... +.|+++|+||+|+..... ..+....+....+..++
T Consensus 80 aDvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~~v 141 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKDK-------------LLPLIDKYAILEDFKDI 141 (270)
T ss_pred CCEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHHH-------------HHHHHHHHHhhcCCCce
Confidence 99999999999876654 2344555443 789999999999964321 12233444444443478
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+++||++|.|++++++++.+.+.+.
T Consensus 142 ~~iSA~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 142 VPISALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred EEEecCCCCCHHHHHHHHHHhCCCC
Confidence 9999999999999999999987543
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-24 Score=146.57 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=106.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeC-CEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVD-GIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
.|+++|.+|+|||||+++|....+...+.++..... ......+ +..+.+.+||+||++.+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999998876544333222222 1222222 13567779999999998888888899999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH----H-cCCceeEEe
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN----K-IRAVKYMEC 160 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~ 160 (195)
|+++....+... .+..+.. .++|+++++||+|+....... . ......+.. . ...++++++
T Consensus 82 d~~~~~~~~~~~--~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
T cd01887 82 AADDGVMPQTIE--AIKLAKA--ANVPFIVALNKIDKPNANPER----------V-KNELSELGLQGEDEWGGDVQIVPT 146 (168)
T ss_pred ECCCCccHHHHH--HHHHHHH--cCCCEEEEEEceecccccHHH----------H-HHHHHHhhccccccccCcCcEEEe
Confidence 998854332221 2223333 378999999999986432100 0 011111110 0 122579999
Q ss_pred ccCCcccHHHHHHHHHHHH
Q psy10443 161 SALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~ 179 (195)
|+++|+|+++++++|.+..
T Consensus 147 Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 147 SAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred ecccCCCHHHHHHHHHHhh
Confidence 9999999999999998764
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-25 Score=147.12 Aligned_cols=147 Identities=20% Similarity=0.286 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc------ccCCCC--CCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD------RLRPLS--YPQ 77 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~------~~~~~~--~~~ 77 (195)
++|+++|.||||||||+|+|++... ..+++.++.+.....+.+.+..+. ++|+||--... .....+ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~--lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVE--LVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEE--EEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEE--EEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999753 356677777666777778886555 99999942221 112223 257
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
.|++++|+|+++.+.-.. +...+.+. ++|+++++||+|...... . .-+...+.+.++ +|+
T Consensus 79 ~D~ii~VvDa~~l~r~l~----l~~ql~e~--g~P~vvvlN~~D~a~~~g------------~-~id~~~Ls~~Lg-~pv 138 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLY----LTLQLLEL--GIPVVVVLNKMDEAERKG------------I-EIDAEKLSERLG-VPV 138 (156)
T ss_dssp SSEEEEEEEGGGHHHHHH----HHHHHHHT--TSSEEEEEETHHHHHHTT------------E-EE-HHHHHHHHT-S-E
T ss_pred CCEEEEECCCCCHHHHHH----HHHHHHHc--CCCEEEEEeCHHHHHHcC------------C-EECHHHHHHHhC-CCE
Confidence 999999999987543322 33444444 799999999999987532 2 224667777888 799
Q ss_pred EEeccCCcccHHHHHHHH
Q psy10443 158 MECSALTQRGLRQVFDEA 175 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l 175 (195)
+++||++++|++++++.|
T Consensus 139 i~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 139 IPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EEEBTTTTBTHHHHHHHH
T ss_pred EEEEeCCCcCHHHHHhhC
Confidence 999999999999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=150.86 Aligned_cols=154 Identities=21% Similarity=0.196 Sum_probs=105.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCC-CcccceeeccceeEEeCCEEEEEEEEeCCCCccc---------cccCCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPG-EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY---------DRLRPLS 74 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~---------~~~~~~~ 74 (195)
..++|+++|++|||||||++++++..+.. ....++.......+.+++. ..+.+||+||.... ...+ ..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 35799999999999999999999876422 2222222222233344443 25679999997321 1111 12
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
+.++|++++|+|++++.+..... .|...+... ..+.|+++|+||+|+...... ..+.....
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~-~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----------------~~~~~~~~ 179 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIE-TVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----------------EERLEAGR 179 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHH-HHHHHHHHcCcCCCCEEEEEEccccCChHHH-----------------HHHhhcCC
Confidence 56899999999999988777654 365666543 246899999999999765321 02233333
Q ss_pred CceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
.+++++||+++.|+++++++|.+.+
T Consensus 180 -~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 180 -PDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred -CceEEEEcCCCCCHHHHHHHHHhhC
Confidence 6799999999999999999988753
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-24 Score=143.78 Aligned_cols=147 Identities=18% Similarity=0.223 Sum_probs=105.2
Q ss_pred EEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc------CCCCC--CCccEE
Q psy10443 11 VVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL------RPLSY--PQTDVF 81 (195)
Q Consensus 11 v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~------~~~~~--~~~d~~ 81 (195)
++|.+|+|||||++++++..+. ..+..++.......+.+++. .+.+|||||+..+... +..++ .++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGK--EIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCe--EEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 5899999999999999987533 33343444444455666664 5679999998876643 34445 489999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
++|+|+++++.... |...+... ++|+++++||+|+..... .. .+...+...++ .+++++|
T Consensus 79 i~v~d~~~~~~~~~----~~~~~~~~--~~~~iiv~NK~Dl~~~~~------------~~-~~~~~~~~~~~-~~~~~iS 138 (158)
T cd01879 79 VNVVDATNLERNLY----LTLQLLEL--GLPVVVALNMIDEAEKRG------------IK-IDLDKLSELLG-VPVVPTS 138 (158)
T ss_pred EEEeeCCcchhHHH----HHHHHHHc--CCCEEEEEehhhhccccc------------ch-hhHHHHHHhhC-CCeEEEE
Confidence 99999988654332 33333332 789999999999965421 21 22345666666 6899999
Q ss_pred cCCcccHHHHHHHHHHHH
Q psy10443 162 ALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~ 179 (195)
++++.|++++++++.+.+
T Consensus 139 a~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 139 ARKGEGIDELKDAIAELA 156 (158)
T ss_pred ccCCCCHHHHHHHHHHHh
Confidence 999999999999998764
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.8e-25 Score=153.42 Aligned_cols=158 Identities=17% Similarity=0.151 Sum_probs=102.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCC-----------CccccccCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG-----------QEDYDRLRP 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G-----------~~~~~~~~~ 72 (195)
.+.++|+++|.+|||||||+++|++..+...+.+++... ...+..+ .+.+||+|| ++.++..+.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 356899999999999999999999877654444433221 1222222 467999999 455555444
Q ss_pred CCC----CCccEEEEEEeCCChhcHHH---------HHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCC
Q psy10443 73 LSY----PQTDVFLICYSVVSPSSFDN---------VTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSP 139 (195)
Q Consensus 73 ~~~----~~~d~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~ 139 (195)
.++ ..++++++|+|.++...... ....+...+.. .++|+++|+||+|+....
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~------------- 146 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR------------- 146 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-------------
Confidence 444 34678888888765322110 00112233332 379999999999986542
Q ss_pred ccHHHHHHHHHHcCC--------ceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 140 VKREQGQKLANKIRA--------VKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 140 ~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
.+...++...++. .+++++||++| |+++++++|.+.+.+.++
T Consensus 147 --~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 147 --DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred --HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 1223344444442 25899999999 999999999998765443
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-24 Score=141.90 Aligned_cols=154 Identities=41% Similarity=0.612 Sum_probs=116.0
Q ss_pred EEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCC
Q psy10443 11 VVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVS 89 (195)
Q Consensus 11 v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 89 (195)
++|++|+|||||++++.+... .....++.................+.+||+||+..+...+..+++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998776 4555555533344555556667888999999998888877888999999999999999
Q ss_pred hhcHHHHHHhh-HHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccH
Q psy10443 90 PSSFDNVTSKW-YPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGL 168 (195)
Q Consensus 90 ~~s~~~~~~~~-~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 168 (195)
+.+.......+ .........+.|+++++||+|+..... ................+++++|++++.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~------------~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 148 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERV------------VSEEELAEQLAKELGVPYFETSAKTGENV 148 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccc------------hHHHHHHHHHHhhcCCcEEEEecCCCCCh
Confidence 98888776421 233333456899999999999876532 11111122333444588999999999999
Q ss_pred HHHHHHHH
Q psy10443 169 RQVFDEAV 176 (195)
Q Consensus 169 ~~~~~~l~ 176 (195)
++++++|.
T Consensus 149 ~~~~~~l~ 156 (157)
T cd00882 149 EELFEELA 156 (157)
T ss_pred HHHHHHHh
Confidence 99999975
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=163.72 Aligned_cols=161 Identities=20% Similarity=0.250 Sum_probs=112.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccC-----------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLR----------- 71 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~----------- 71 (195)
..++|+++|.+|+|||||+++|++.. ......+|+.+.....+..++.. +.+|||||..++....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKK--YLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcE--EEEEECCCccccccchhhHHHHHHHHH
Confidence 45899999999999999999999864 23455566666555556666664 5599999976654332
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
..+++.+|++++|+|++++.+.++.. +...+... +.|+++|+||+|+........ ....+.......
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~~~--~~~iiiv~NK~Dl~~~~~~~~---------~~~~~~~~~~~~ 315 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR--IAGLILEA--GKALVIVVNKWDLVKDEKTRE---------EFKKELRRKLPF 315 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH--HHHHHHHc--CCcEEEEEECcccCCCHHHHH---------HHHHHHHHhccc
Confidence 23578899999999999887766653 44444433 789999999999973211000 001112112222
Q ss_pred cCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.+.++++++||++|.|++++|+++.+...
T Consensus 316 ~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 316 LDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 34478999999999999999999888654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=140.20 Aligned_cols=114 Identities=31% Similarity=0.520 Sum_probs=87.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCC--Ccccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPG--EYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~--~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
||+|+|++|||||||+++|.+..+.. .+.++..... .....+......+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999987651 1122222222 22345566666689999999999888877789999999999
Q ss_pred EeCCChhcHHHHHHh--hHHHHhhhCCCCcEEEEeeCCC
Q psy10443 85 YSVVSPSSFDNVTSK--WYPELKHHCPDAPIILVGTKID 121 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~p~vvv~nK~D 121 (195)
||++++++++.+.+. |+..+....+++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999999987542 6777776677899999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-24 Score=143.70 Aligned_cols=146 Identities=21% Similarity=0.203 Sum_probs=103.2
Q ss_pred EEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc--------cCCCCCCCcc
Q psy10443 10 VVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR--------LRPLSYPQTD 79 (195)
Q Consensus 10 ~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~--------~~~~~~~~~d 79 (195)
+++|.+|+|||||+++|++.. +.....+++..........++ ..+.+||+||...+.. .+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999864 334445555444444455555 4566999999887543 2334678899
Q ss_pred EEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE
Q psy10443 80 VFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159 (195)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (195)
++++|+|+.++.+..... +...+... +.|+++++||+|+..... . .......+..++++
T Consensus 79 ~ii~v~d~~~~~~~~~~~--~~~~~~~~--~~piiiv~nK~D~~~~~~------------~-----~~~~~~~~~~~~~~ 137 (157)
T cd01894 79 VILFVVDGREGLTPADEE--IAKYLRKS--KKPVILVVNKVDNIKEED------------E-----AAEFYSLGFGEPIP 137 (157)
T ss_pred EEEEEEeccccCCccHHH--HHHHHHhc--CCCEEEEEECcccCChHH------------H-----HHHHHhcCCCCeEE
Confidence 999999998765444321 33444433 599999999999976532 1 11223344336899
Q ss_pred eccCCcccHHHHHHHHHHH
Q psy10443 160 CSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~ 178 (195)
+|++++.|++++++++.+.
T Consensus 138 ~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 138 ISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred EecccCCCHHHHHHHHHhh
Confidence 9999999999999999875
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >KOG3883|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=132.48 Aligned_cols=169 Identities=29% Similarity=0.403 Sum_probs=139.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEe-CCEEEEEEEEeCCCCccc-cccCCCCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTV-DGIPVSLGLWDTAGQEDY-DRLRPLSYPQTD 79 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~-~~~~~~~~~~~d 79 (195)
.+--||+|+|..++|||+|+.++.-+. ...++.||.++.+...+.. ++..=.+.++||+|-..+ ..+-.+|+.-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 467899999999999999999987764 3467778888887665554 344446779999997666 667788999999
Q ss_pred EEEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 80 VFLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
++++||+..|++||+.+.. +...+.+. -..+|+++++||+|+.++ +.+..+.++.|++.-. +..
T Consensus 87 afVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p------------~~vd~d~A~~Wa~rEk-vkl 152 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEP------------REVDMDVAQIWAKREK-VKL 152 (198)
T ss_pred eEEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccc------------hhcCHHHHHHHHhhhh-eeE
Confidence 9999999999999998763 55555553 246999999999999877 4588888999999888 789
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCCCccc
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRPEPVK 186 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~ 186 (195)
+++++.++..+-+.|..+...+.+++.+.
T Consensus 153 ~eVta~dR~sL~epf~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 153 WEVTAMDRPSLYEPFTYLASRLHQPQSKS 181 (198)
T ss_pred EEEEeccchhhhhHHHHHHHhccCCcccc
Confidence 99999999999999999999998887654
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-24 Score=148.75 Aligned_cols=148 Identities=14% Similarity=0.034 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhc--CCCCCCcc------------cceeecc-ceeEEeCCEEEEEEEEeCCCCccccccC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT--DSFPGEYV------------PTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLR 71 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~--~~~~~~~~------------~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~ 71 (195)
-+|+++|.+++|||||+++|++ +.+...+. .+.+..+ .....++...+.+.+||+||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 44443321 1111111 1222334445778899999999999888
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
..+++++|++++|+|+++... .... .++..+.. .++|+++++||+|+...... ...++...+...
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~~-~~~~-~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~-----------~~~~~~~~~~~~ 147 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGPM-PQTR-FVLKKALE--LGLKPIVVINKIDRPDARPE-----------EVVDEVFDLFIE 147 (194)
T ss_pred HHHHHhcCEEEEEEECCCCcc-HHHH-HHHHHHHH--cCCCEEEEEECCCCCCCCHH-----------HHHHHHHHHHHH
Confidence 999999999999999987422 2222 23333333 37899999999999653210 112333343322
Q ss_pred c------CCceeEEeccCCcccHH
Q psy10443 152 I------RAVKYMECSALTQRGLR 169 (195)
Q Consensus 152 ~------~~~~~~~~Sa~~~~~v~ 169 (195)
+ ..++++++||++|.|+.
T Consensus 148 ~~~~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 148 LGATEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred hCCccccCccCEEEeehhcccccc
Confidence 2 12689999999997663
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-24 Score=168.51 Aligned_cols=161 Identities=19% Similarity=0.195 Sum_probs=114.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC-------CCCCcccce------eeccc---eeEEe---CCEEEEEEEEeCCCCccc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS-------FPGEYVPTV------FDNYS---APFTV---DGIPVSLGLWDTAGQEDY 67 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~-------~~~~~~~t~------~~~~~---~~~~~---~~~~~~l~~~D~~G~~~~ 67 (195)
-||+++|+.++|||||+++|+... +...+..+. +..+. ..+.+ ++..+.++||||||+..|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 489999999999999999998642 112222211 11111 11222 466789999999999999
Q ss_pred cccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHH
Q psy10443 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQK 147 (195)
Q Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (195)
...+..+++.+|++|+|+|+++..+.+.... |..... .++|+++++||+|+..... .+...+
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~-~~~~~~---~~ipiIiViNKiDl~~~~~--------------~~~~~e 145 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLAN-VYLALE---NDLEIIPVINKIDLPSADP--------------ERVKKE 145 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHH-HHHHHH---cCCCEEEEEECcCCCccCH--------------HHHHHH
Confidence 9888889999999999999998776666543 544433 2789999999999864321 112233
Q ss_pred HHHHcCC--ceeEEeccCCcccHHHHHHHHHHHHcCCCcc
Q psy10443 148 LANKIRA--VKYMECSALTQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 148 ~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
+...++. ..++++||++|.|++++|++|.+.+..+...
T Consensus 146 l~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~ 185 (595)
T TIGR01393 146 IEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPKGD 185 (595)
T ss_pred HHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCCCC
Confidence 3343442 2489999999999999999999998776543
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=161.57 Aligned_cols=151 Identities=22% Similarity=0.275 Sum_probs=113.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc--------CCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL--------RPLS 74 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--------~~~~ 74 (195)
..++|+++|.+|||||||+++|++.. +..++++|+.+.....+.+++..+ .+|||||...+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v--~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILI--KLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEE--EEeeCCCcccchhHHHHHHHHHHHHH
Confidence 56899999999999999999999864 346677777776667777877655 59999998655432 2357
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
++++|++++|+|++++.+.+.. |+..+.. .+.|+++|+||+|+.... ...++..++
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~~------------------~~~~~~~~~- 335 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKINS------------------LEFFVSSKV- 335 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCcc------------------hhhhhhhcC-
Confidence 7899999999999998876653 4444432 378999999999985421 122344444
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.+++.+||++ .|++++|+.+.+.+.+.
T Consensus 336 ~~~~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 336 LNSSNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred CceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 5789999998 68889988888877543
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-24 Score=148.41 Aligned_cols=163 Identities=18% Similarity=0.130 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC----CCCCCc----ccceeeccceeEEe------------CCEEEEEEEEeCCCCcc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD----SFPGEY----VPTVFDNYSAPFTV------------DGIPVSLGLWDTAGQED 66 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~----~~~~~~----~~t~~~~~~~~~~~------------~~~~~~l~~~D~~G~~~ 66 (195)
+||+++|++|+|||||+++|+.. .+...+ ..++.........+ ++..+.+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 111111 11221111112222 23467888999999876
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ 146 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (195)
+..........+|++++|+|+++....+... .+. .... .+.|+++++||+|+....... ...++..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~-~~~-~~~~--~~~~~iiv~NK~Dl~~~~~~~----------~~~~~~~ 146 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAE-CLV-IGEI--LCKKLIVVLNKIDLIPEEERE----------RKIEKMK 146 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHH-HHH-HHHH--cCCCEEEEEECcccCCHHHHH----------HHHHHHH
Confidence 5433334456789999999998754444332 122 1221 267999999999987432211 1112222
Q ss_pred H-HHHH-----cCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 147 K-LANK-----IRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 147 ~-~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+ +... ...++++++||++|.|+++++++|.+.++.+.
T Consensus 147 ~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 147 KKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccccc
Confidence 2 1111 23368999999999999999999999887653
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=155.82 Aligned_cols=157 Identities=22% Similarity=0.206 Sum_probs=110.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc----ccCCCC---CCCc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD----RLRPLS---YPQT 78 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~----~~~~~~---~~~~ 78 (195)
..|+++|.||||||||++++++... ..+|+.|+.......+.+++ ...+.+||+||..+.. .+...+ ++.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4799999999999999999998642 24455555444344445544 2456699999974322 222233 4479
Q ss_pred cEEEEEEeCCCh---hcHHHHHHhhHHHHhhhC---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc
Q psy10443 79 DVFLICYSVVSP---SSFDNVTSKWYPELKHHC---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI 152 (195)
Q Consensus 79 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
+++++|+|+++. ++++... .|...+..+. .+.|+++|+||+|+..... ..+..+.+.+.+
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~-~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-------------~~~~~~~l~~~~ 302 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYE-IIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-------------LAELLKELKKAL 302 (329)
T ss_pred CEEEEEEcCccccccCHHHHHH-HHHHHHHHhhhhhccCCEEEEEeCccCCChHH-------------HHHHHHHHHHHc
Confidence 999999999976 5555554 3666665442 4789999999999976421 123344555555
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
+ .+++++||++++|+++++.+|.+.+
T Consensus 303 ~-~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 303 G-KPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred C-CcEEEEEccCCcCHHHHHHHHHHHh
Confidence 5 6899999999999999999998765
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-23 Score=146.52 Aligned_cols=157 Identities=18% Similarity=0.108 Sum_probs=108.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCccccee-----------------eccceeEEeCCEEEEEEEEeCCCCcccccc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVF-----------------DNYSAPFTVDGIPVSLGLWDTAGQEDYDRL 70 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~-----------------~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~ 70 (195)
+|+++|.+|+|||||++.|.+.........+.. .......... ...+.+||+||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 589999999999999999998765443322111 1111112222 456779999999888888
Q ss_pred CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
+..+++.+|++++|+|++++.+..... ++..+.. .+.|+++++||+|+........ ..++..+..+
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~----------~~~~~~~~~~ 144 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTRE--HLRIARE--GGLPIIVAINKIDRVGEEDLEE----------VLREIKELLG 144 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHHH--HHHHHHH--CCCCeEEEEECCCCcchhcHHH----------HHHHHHHHHc
Confidence 888889999999999998866544332 3344433 4799999999999976321111 1122222222
Q ss_pred H-------------cCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 151 K-------------IRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 151 ~-------------~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
. ....+++++||++|.|+++++.++.+.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 145 LIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2 12478999999999999999999998874
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >KOG0076|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-25 Score=142.78 Aligned_cols=170 Identities=22% Similarity=0.318 Sum_probs=126.5
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCC------C-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCC
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDS------F-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPL 73 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~------~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~ 73 (195)
|.++..+.|+++|..++|||||+..+.... . +....+|.+.+. ..+.+. ...+.|||.+||+..+++|..
T Consensus 12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni-g~i~v~--~~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI-GTIEVC--NAPLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee-cceeec--cceeEEEEcCChHHHHHHHHH
Confidence 566788999999999999999998876421 1 122223333332 233344 456779999999999999999
Q ss_pred CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHH---H
Q psy10443 74 SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKL---A 149 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 149 (195)
||..++++|+++|+++++.++.....+...+... ..++|+++.+||.|+...-+. .++... +
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~--------------~El~~~~~~~ 154 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEA--------------AELDGVFGLA 154 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhH--------------HHHHHHhhhh
Confidence 9999999999999999999998876565655544 468999999999998765322 222211 1
Q ss_pred HHc--CCceeEEeccCCcccHHHHHHHHHHHHcCCCcccc
Q psy10443 150 NKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKR 187 (195)
Q Consensus 150 ~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~ 187 (195)
... ...++.++||.+|+|+++-.+|+.+.+.+...+..
T Consensus 155 e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn~~rp~ 194 (197)
T KOG0076|consen 155 ELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKNVTRPP 194 (197)
T ss_pred hhcCCccCccccchhhhcccHHHHHHHHHHHHhhccCCCc
Confidence 222 22578999999999999999999999988744333
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=163.73 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=108.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCcc--------ccccCCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED--------YDRLRPLSY 75 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~--------~~~~~~~~~ 75 (195)
..+|+++|.+|||||||+++|++.... .....++.+.......+++.. +.+|||||.+. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRR--FTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcE--EEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 368999999999999999999987532 333333444445555666655 55999999763 222344567
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
+.+|++|+|+|+++..+.... .|...++. .+.|+++|+||+|+.... .+....+...++
T Consensus 116 ~~aD~il~VvD~~~~~s~~~~--~i~~~l~~--~~~piilV~NK~Dl~~~~---------------~~~~~~~~~g~~-- 174 (472)
T PRK03003 116 RTADAVLFVVDATVGATATDE--AVARVLRR--SGKPVILAANKVDDERGE---------------ADAAALWSLGLG-- 174 (472)
T ss_pred HhCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCccc---------------hhhHHHHhcCCC--
Confidence 899999999999987665432 35555554 379999999999985421 111222333333
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
..+++||++|.|++++|+++.+.+.+
T Consensus 175 ~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 175 EPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 35799999999999999999998865
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=138.54 Aligned_cols=156 Identities=21% Similarity=0.303 Sum_probs=104.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc-----------C
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL-----------R 71 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~-----------~ 71 (195)
++++|+++|.+|+|||||++++++.... .....++..........++..+ .+||+||....... .
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKY--TLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeE--EEEECCCCccccchhccHHHHHHHHH
Confidence 3689999999999999999999986532 2333333333334455566554 59999997543211 1
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH-HHHHHH
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ-GQKLAN 150 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 150 (195)
...++.+|++++|+|++++.+..... +...+.. .+.|+++++||+|+..... ...+. ...+.+
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~~~iiv~nK~Dl~~~~~------------~~~~~~~~~~~~ 142 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLR--IAGLILE--EGKALVIVVNKWDLVEKDS------------KTMKEFKKEIRR 142 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHH--HHHHHHh--cCCCEEEEEeccccCCccH------------HHHHHHHHHHHh
Confidence 12456899999999999887755432 3333332 2689999999999876521 01111 111222
Q ss_pred Hc---CCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 151 KI---RAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 151 ~~---~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
.+ +..+++++||+++.|++++++++.+.
T Consensus 143 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 143 KLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred hcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 22 23679999999999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=140.80 Aligned_cols=156 Identities=21% Similarity=0.175 Sum_probs=103.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCC--CcccceeeccceeEEeCCEEEEEEEEeCCCCccccc--------cCCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPG--EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR--------LRPLS 74 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~--------~~~~~ 74 (195)
...+|+++|.+|+|||||++++.+..... ....++....... .....+.+.+||+||...... .....
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA 79 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence 46789999999999999999999865421 1112222211221 223345677999999754432 22335
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
+..+|++++|+|++++... ....+...+... +.|+++++||+|+..... ...+....+....+.
T Consensus 80 ~~~~d~i~~v~d~~~~~~~--~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~ 143 (168)
T cd04163 80 LKDVDLVLFVVDASEPIGE--GDEFILELLKKS--KTPVILVLNKIDLVKDKE------------DLLPLLEKLKELGPF 143 (168)
T ss_pred HHhCCEEEEEEECCCccCc--hHHHHHHHHHHh--CCCEEEEEEchhccccHH------------HHHHHHHHHHhccCC
Confidence 7789999999999987221 111233444433 689999999999974321 122334444455545
Q ss_pred ceeEEeccCCcccHHHHHHHHHHH
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
.+++++|++++.|++++++.|.+.
T Consensus 144 ~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 144 AEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred CceEEEEeccCCChHHHHHHHHhh
Confidence 689999999999999999999775
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=146.14 Aligned_cols=170 Identities=14% Similarity=0.174 Sum_probs=111.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCc-cEEEEEEe
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT-DVFLICYS 86 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~-d~~i~v~d 86 (195)
+|+++|++|||||||+++|..+.+...+.++............+..+.+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999987765554443222111111123456788999999999988888889998 99999999
Q ss_pred CCCh-hcHHHHHHhhHHHHhh---hCCCCcEEEEeeCCCcccchHhhhhhhhcC-------------CCCccHHH-----
Q psy10443 87 VVSP-SSFDNVTSKWYPELKH---HCPDAPIILVGTKIDLREDRETLNLLSEQN-------------LSPVKREQ----- 144 (195)
Q Consensus 87 ~~~~-~s~~~~~~~~~~~~~~---~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~-------------~~~~~~~~----- 144 (195)
+++. .++.....++...+.. ..+++|+++++||+|+............++ +......+
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 6777766544444432 236899999999999875433221111100 00000000
Q ss_pred -------HHHHHHHcCCceeEEeccCCcc-cHHHHHHHHHH
Q psy10443 145 -------GQKLANKIRAVKYMECSALTQR-GLRQVFDEAVR 177 (195)
Q Consensus 145 -------~~~~~~~~~~~~~~~~Sa~~~~-~v~~~~~~l~~ 177 (195)
...|...-..+.++++|++.+. |++.+.+||.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0112221123678899998876 69999998865
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-23 Score=160.44 Aligned_cols=148 Identities=23% Similarity=0.310 Sum_probs=111.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc--------CCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL--------RPLS 74 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--------~~~~ 74 (195)
..++|+++|.+|+|||||+++|++... ..+..+++.+.....+.+++.. +.+|||||...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIP--LRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeE--EEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 458999999999999999999998653 4556666666656666777654 569999998754432 2346
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
+.++|++++|+|++++.+..+.. .|.. ..+.|+++|+||+|+..... .. ....
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~-~l~~-----~~~~piiiV~NK~DL~~~~~------------~~---------~~~~ 344 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDE-ILEE-----LKDKPVIVVLNKADLTGEID------------LE---------EENG 344 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHH-HHHh-----cCCCCcEEEEEhhhccccch------------hh---------hccC
Confidence 78899999999999988766543 2333 44789999999999965421 10 1222
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
.+++++||++|.|+++++++|.+.+..
T Consensus 345 ~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 345 KPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred CceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 578999999999999999999998754
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=160.49 Aligned_cols=154 Identities=19% Similarity=0.243 Sum_probs=107.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.++.+|+++|++++|||||+++|.+..+...+.+...... ...+.+++.. .+.|||||||+.|..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 3567999999999999999999998776544333222221 2233343321 5679999999999999988999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH-------HHcC-C
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA-------NKIR-A 154 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~ 154 (195)
+|+|+++....+... .+ ..... .++|+++++||+|+..... ++..... ..++ .
T Consensus 164 LVVda~dgv~~qT~e-~i-~~~~~--~~vPiIVviNKiDl~~~~~---------------e~v~~~L~~~g~~~~~~~~~ 224 (587)
T TIGR00487 164 LVVAADDGVMPQTIE-AI-SHAKA--ANVPIIVAINKIDKPEANP---------------DRVKQELSEYGLVPEDWGGD 224 (587)
T ss_pred EEEECCCCCCHhHHH-HH-HHHHH--cCCCEEEEEECcccccCCH---------------HHHHHHHHHhhhhHHhcCCC
Confidence 999998754333322 12 22222 3799999999999864321 1111111 1222 2
Q ss_pred ceeEEeccCCcccHHHHHHHHHH
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
.+++++||++|+|++++++++..
T Consensus 225 ~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 225 TIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred ceEEEEECCCCCChHHHHHhhhh
Confidence 57999999999999999999865
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-23 Score=155.62 Aligned_cols=150 Identities=20% Similarity=0.231 Sum_probs=105.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEe-CCEEEEEEEEeCCCCcc---------ccccCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTV-DGIPVSLGLWDTAGQED---------YDRLRPLS 74 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~l~~~D~~G~~~---------~~~~~~~~ 74 (195)
.++|+++|.+|+|||||+|+|++..+. .+...++.+.....+.+ ++. .+.+|||||..+ |...+ ..
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~--~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGG--EVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCc--eEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 489999999999999999999997542 33444554444555555 343 566999999721 22211 24
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
+.++|++++|+|++++.+...... |...+... ..+.|+++|+||+|+..... ...+.. .
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----------------v~~~~~--~ 325 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEA-VEKVLEELGAEDIPQLLVYNKIDLLDEPR-----------------IERLEE--G 325 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHH-HHHHHHHhccCCCCEEEEEEeecCCChHh-----------------HHHHHh--C
Confidence 678999999999999887766543 55555543 24789999999999865321 111111 1
Q ss_pred CceeEEeccCCcccHHHHHHHHHHH
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
..+++.+||++|.|+++++++|.+.
T Consensus 326 ~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 326 YPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CCCEEEEEccCCCCHHHHHHHHHhh
Confidence 1458999999999999999998764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-23 Score=140.92 Aligned_cols=152 Identities=23% Similarity=0.255 Sum_probs=101.3
Q ss_pred EEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeC-CEEEEEEEEeCCCCccc----cccC---CCCCCCccEE
Q psy10443 11 VVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVD-GIPVSLGLWDTAGQEDY----DRLR---PLSYPQTDVF 81 (195)
Q Consensus 11 v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~l~~~D~~G~~~~----~~~~---~~~~~~~d~~ 81 (195)
++|.+|||||||+++|.+... ...+..++.........++ + ..+.+||+||.... ..+. ...+.++|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999998764 2334444433333334444 4 45669999996332 2222 2246789999
Q ss_pred EEEEeCCCh------hcHHHHHHhhHHHHhhhC--------CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHH
Q psy10443 82 LICYSVVSP------SSFDNVTSKWYPELKHHC--------PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQK 147 (195)
Q Consensus 82 i~v~d~~~~------~s~~~~~~~~~~~~~~~~--------~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (195)
++|+|++++ .++.+... |...+.... .+.|+++|+||+|+...... .......
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~------------~~~~~~~ 145 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEI-LNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEEL------------EEELVRE 145 (176)
T ss_pred EEEEeccCCccccccCHHHHHHH-HHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHH------------HHHHHHH
Confidence 999999988 45655543 544444321 37899999999999765321 1111122
Q ss_pred HHHHcCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 148 LANKIRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 148 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
+... ...+++++||+++.|++++++++.+.
T Consensus 146 ~~~~-~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 146 LALE-EGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HhcC-CCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 2222 33679999999999999999998764
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=136.05 Aligned_cols=145 Identities=24% Similarity=0.287 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc--------CCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL--------RPLSYP 76 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--------~~~~~~ 76 (195)
++|+++|++|+|||||++++++... .....+++.......+..++ ..+.+||+||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 6899999999999999999998753 23333444333333444444 45679999997655422 224567
Q ss_pred CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 77 QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
.+|++++|+|++++.+...... +.. ..+.|+++++||+|+..... . ..... ..+
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~-~~~-----~~~~~vi~v~nK~D~~~~~~------------~-------~~~~~-~~~ 133 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEI-LEL-----PADKPIIVVLNKSDLLPDSE------------L-------LSLLA-GKP 133 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHH-HHh-----hcCCCEEEEEEchhcCCccc------------c-------ccccC-CCc
Confidence 8999999999998777665542 222 34789999999999976531 1 12222 368
Q ss_pred eEEeccCCcccHHHHHHHHHHHH
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
++++||+++.|+++++++|.+.+
T Consensus 134 ~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 134 IIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh
Confidence 99999999999999999988754
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-23 Score=137.96 Aligned_cols=144 Identities=16% Similarity=0.105 Sum_probs=99.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccC----CCCCCCccEEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLR----PLSYPQTDVFLI 83 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~----~~~~~~~d~~i~ 83 (195)
+|+++|.+|+|||||++++.+.... ...+ ..+.+.+. .+||+||.......+ ...+.++|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKT------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--Cccc------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 7999999999999999998864311 1111 12222222 279999973222111 223679999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC-ceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA-VKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa 162 (195)
|+|+++.++.... |+..+ ..+.|+++++||+|+... ..+...++....+. .+++++||
T Consensus 71 v~d~~~~~s~~~~---~~~~~---~~~~~ii~v~nK~Dl~~~---------------~~~~~~~~~~~~~~~~p~~~~Sa 129 (158)
T PRK15467 71 VHGANDPESRLPA---GLLDI---GVSKRQIAVISKTDMPDA---------------DVAATRKLLLETGFEEPIFELNS 129 (158)
T ss_pred EEeCCCcccccCH---HHHhc---cCCCCeEEEEEccccCcc---------------cHHHHHHHHHHcCCCCCEEEEEC
Confidence 9999988765322 33322 236799999999998542 23445666666663 48999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCc
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++|+|++++|+.+.+.+.+...
T Consensus 130 ~~g~gi~~l~~~l~~~~~~~~~ 151 (158)
T PRK15467 130 HDPQSVQQLVDYLASLTKQEEA 151 (158)
T ss_pred CCccCHHHHHHHHHHhchhhhc
Confidence 9999999999999888765443
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=152.85 Aligned_cols=156 Identities=22% Similarity=0.216 Sum_probs=109.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccc----cccCCCC---CCCcc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY----DRLRPLS---YPQTD 79 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~----~~~~~~~---~~~~d 79 (195)
.|+++|.||||||||++++++... ..+++.|+.......+.+++ ...+.+||+||.... ..+...+ ++.++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 799999999999999999998653 13455555443333344431 245669999996432 1222333 45689
Q ss_pred EEEEEEeCCCh---hcHHHHHHhhHHHHhhhC---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 80 VFLICYSVVSP---SSFDNVTSKWYPELKHHC---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 80 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
++++|+|+++. +.+++.. .|...+..+. .+.|++||+||+|+... .+....+.+.++
T Consensus 239 llI~VID~s~~~~~dp~e~~~-~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----------------~e~l~~l~~~l~ 301 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYE-KINKELKLYNPRLLERPQIVVANKMDLPEA----------------EENLEEFKEKLG 301 (424)
T ss_pred EEEEEEeCCccccCChHHHHH-HHHHHHhhhchhccCCcEEEEEeCCCCcCC----------------HHHHHHHHHHhC
Confidence 99999999865 4555554 3666666543 37899999999997432 133455666666
Q ss_pred CceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.+++++||++++|+++++++|.+.+.+.
T Consensus 302 -~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 302 -PKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred -CcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 6899999999999999999999887543
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=160.87 Aligned_cols=165 Identities=19% Similarity=0.184 Sum_probs=114.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC--CCCC-----Ccccce------eecc---ceeEEe---CCEEEEEEEEeCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD--SFPG-----EYVPTV------FDNY---SAPFTV---DGIPVSLGLWDTAGQ 64 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~-----~~~~t~------~~~~---~~~~~~---~~~~~~l~~~D~~G~ 64 (195)
++--|++++|+.++|||||+.+|+.. .+.. .+..+. +..+ ...+.+ ++..+.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 44559999999999999999999763 1111 110110 1111 111122 456788999999999
Q ss_pred ccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
.+|...+..+++.+|++|+|+|+++....+.... |..... .++|+++++||+|+..... ...
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~-~~~~~~---~~lpiIvViNKiDl~~a~~--------------~~v 146 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLALE---NDLEIIPVLNKIDLPAADP--------------ERV 146 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH---CCCCEEEEEECCCCCcccH--------------HHH
Confidence 9998888889999999999999998766555442 443332 3789999999999865321 111
Q ss_pred HHHHHHHcCC--ceeEEeccCCcccHHHHHHHHHHHHcCCCccc
Q psy10443 145 GQKLANKIRA--VKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186 (195)
Q Consensus 145 ~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~ 186 (195)
..++...++. ..++.+||++|.|+++++++|.+.+..+....
T Consensus 147 ~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~~ 190 (600)
T PRK05433 147 KQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPKGDP 190 (600)
T ss_pred HHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccccCCC
Confidence 2223333331 24899999999999999999999988775433
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-22 Score=148.21 Aligned_cols=162 Identities=20% Similarity=0.178 Sum_probs=110.1
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc--------ccCC
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD--------RLRP 72 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~--------~~~~ 72 (195)
+++.-.|+++|.+|||||||+|+|++..+. .....|+..........++ ..+.+|||||..... ....
T Consensus 2 ~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~ 79 (292)
T PRK00089 2 GFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAW 79 (292)
T ss_pred CceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHH
Confidence 346678999999999999999999987643 2233344333333333333 567799999965432 1223
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI 152 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
..+..+|++++|+|+++... .....+...+.. .+.|+++|+||+|+..... ........+....
T Consensus 80 ~~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~------------~l~~~~~~l~~~~ 143 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIG--PGDEFILEKLKK--VKTPVILVLNKIDLVKDKE------------ELLPLLEELSELM 143 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCC--hhHHHHHHHHhh--cCCCEEEEEECCcCCCCHH------------HHHHHHHHHHhhC
Confidence 35678999999999988322 222223344442 3689999999999974321 1223445555555
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+..+++++||+++.|++++++++.+.+.+.
T Consensus 144 ~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 144 DFAEIVPISALKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred CCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 667899999999999999999999987543
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-22 Score=130.57 Aligned_cols=158 Identities=18% Similarity=0.206 Sum_probs=117.6
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcCCC--------CCCccc---ce-eeccceeEEeCCEEEEEEEEeCCCCccccc
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSF--------PGEYVP---TV-FDNYSAPFTVDGIPVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~~~--------~~~~~~---t~-~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~ 69 (195)
.+++..||+|+|+.++||||+++.+..... ...+.. |+ ...+ ....+++ ...+.++|+|||++|..
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~-g~~~~~~-~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDF-GSIELDE-DTGVHLFGTPGQERFKF 83 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecc-cceEEcC-cceEEEecCCCcHHHHH
Confidence 457889999999999999999999998643 111111 22 1111 2233333 23556999999999999
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA 149 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (195)
+|..+.+++.++|+++|.+.+..+ +.. ..+..+....+ +|++|.+||.|+.... ..+++++..
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~-~ii~f~~~~~~-ip~vVa~NK~DL~~a~--------------ppe~i~e~l 146 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAE-EIIDFLTSRNP-IPVVVAINKQDLFDAL--------------PPEKIREAL 146 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHH-HHHHHHhhccC-CCEEEEeeccccCCCC--------------CHHHHHHHH
Confidence 999999999999999999999888 333 35566655533 9999999999998873 344444444
Q ss_pred HHc-CCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 150 NKI-RAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 150 ~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
... -.+++++.+|.++++..+.+..+...
T Consensus 147 ~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 147 KLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred HhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 433 23789999999999999999998876
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=164.93 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=114.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccc----------ccc-C
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY----------DRL-R 71 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~----------~~~-~ 71 (195)
...+|+++|.+|||||||+++|++... ..++.+|+.+.....+.+++..+. +|||||..+. ..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~--liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWL--FIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEE--EEECCCcccCcccchhHHHHHHHHH
Confidence 458999999999999999999998763 456677777766666777877655 9999995321 111 1
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
..+++.+|++++|+|+++..+.++.. +...+... ++|+++|+||+|+........ ...+.......
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~--i~~~~~~~--~~piIiV~NK~DL~~~~~~~~----------~~~~~~~~l~~ 592 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK--VMSMAVDA--GRALVLVFNKWDLMDEFRRQR----------LERLWKTEFDR 592 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEEchhcCChhHHHH----------HHHHHHHhccC
Confidence 23468899999999999988877764 33444332 789999999999975421100 01111111112
Q ss_pred cCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
....+++.+||++|.|++++++.+.+.+.+
T Consensus 593 ~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 593 VTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 233567999999999999999999887764
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-22 Score=154.94 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccc--------cccCCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY--------DRLRPLSYP 76 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~--------~~~~~~~~~ 76 (195)
.+|+++|.+|||||||+++|.+... ...+.+++.+.......+++ ..+.+|||||++.. ......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999998753 34455555555555666666 56679999998762 222344678
Q ss_pred CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 77 QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
.+|++++|+|++++.+..+.. +...++.. +.|+++++||+|..... ....++ ..++.-.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~--~~~~l~~~--~~piilv~NK~D~~~~~----------------~~~~~~-~~lg~~~ 138 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEE--IAKILRKS--NKPVILVVNKVDGPDEE----------------ADAYEF-YSLGLGE 138 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCcEEEEEECccCccch----------------hhHHHH-HhcCCCC
Confidence 999999999998764443321 23334333 78999999999964421 112222 2344334
Q ss_pred eEEeccCCcccHHHHHHHHHHHH
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
++++||++|.|++++++.+.+..
T Consensus 139 ~~~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 139 PYPISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred CEEEEeeCCCCHHHHHHHHHhhC
Confidence 89999999999999999998843
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-22 Score=154.89 Aligned_cols=160 Identities=19% Similarity=0.264 Sum_probs=110.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccC-----------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLR----------- 71 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~----------- 71 (195)
..++|+++|.+|+|||||+++|++.. ......+++.+.....+..++..+. +|||||........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~--lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYT--LIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEE--EEECCCCCCCcchhhHHHHHHHHHH
Confidence 46999999999999999999999754 2344555665555555556666554 99999965432221
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
..+++.+|++|+|+|++++.+.++.. +...+... +.|+++++||+|+........ ..++.......
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~~~--~~~~ivv~NK~Dl~~~~~~~~----------~~~~~~~~l~~ 315 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR--IAGLALEA--GRALVIVVNKWDLVDEKTMEE----------FKKELRRRLPF 315 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCcEEEEEECccCCCHHHHHH----------HHHHHHHhccc
Confidence 23567899999999999887766553 44444433 689999999999974321111 11122222223
Q ss_pred cCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.+..+++++||++|.|++++++.+.+...
T Consensus 316 ~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 316 LDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred ccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 34478999999999999999999877543
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-22 Score=139.98 Aligned_cols=161 Identities=16% Similarity=0.107 Sum_probs=102.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCc----------cccccCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE----------DYDRLRPL 73 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~----------~~~~~~~~ 73 (195)
....+|+++|.+|+|||||++++++..+...+.++.+....... ......+.+||+||.. .+..+...
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINF--FEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEE--EecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 34589999999999999999999987644444444322211111 1112567899999953 22222233
Q ss_pred CCC---CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 74 SYP---QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 74 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
+++ ..+++++|+|++++....+. .+...+.. .+.|+++++||+|+....... ...+++..+..
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~----------~~~~~i~~~l~ 165 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE--YGIPVLIVLTKADKLKKGERK----------KQLKKVRKALK 165 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH--cCCcEEEEEECcccCCHHHHH----------HHHHHHHHHHH
Confidence 333 34688899998876544332 12233332 268999999999987653211 11122333433
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
... .+++++||+++.|++++++.|.+.+.+
T Consensus 166 ~~~-~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 166 FGD-DEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred hcC-CceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 333 678999999999999999999877643
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-22 Score=142.16 Aligned_cols=165 Identities=16% Similarity=0.127 Sum_probs=120.4
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc--------cc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD--------RL 70 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~--------~~ 70 (195)
|.+++.--|+++|.||||||||+|++.+... ..+-..|+.......++.++.+ +.|+||||-.... ..
T Consensus 1 ~~~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~Q--iIfvDTPGih~pk~~l~~~m~~~ 78 (298)
T COG1159 1 PMKFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQ--IIFVDTPGIHKPKHALGELMNKA 78 (298)
T ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCce--EEEEeCCCCCCcchHHHHHHHHH
Confidence 4567888999999999999999999999764 3455567777777777776555 4499999943322 22
Q ss_pred CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
....+..+|+++||+|++++....+ ...++.++. .+.|+++++||+|...+.. ........+..
T Consensus 79 a~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~~~~------------~l~~~~~~~~~ 142 (298)
T COG1159 79 ARSALKDVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVKPKT------------VLLKLIAFLKK 142 (298)
T ss_pred HHHHhccCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCCcHH------------HHHHHHHHHHh
Confidence 3445778999999999987544322 224455554 3679999999999888743 11233344444
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
......++++||++|.|++.+.+.+...+.+.-
T Consensus 143 ~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 143 LLPFKEIVPISALKGDNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred hCCcceEEEeeccccCCHHHHHHHHHHhCCCCC
Confidence 555567899999999999999999999887543
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=141.48 Aligned_cols=163 Identities=17% Similarity=0.175 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccce-----eEEe-------------------------C--C---
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-----PFTV-------------------------D--G--- 51 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~-----~~~~-------------------------~--~--- 51 (195)
++|+++|+.|+|||||+..+.+..... .........+. .+.+ . +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~-~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVR-FKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGET 79 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC-CCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcc
Confidence 589999999999999999997541110 00000000000 0000 0 1
Q ss_pred -EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhh
Q psy10443 52 -IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLN 130 (195)
Q Consensus 52 -~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~ 130 (195)
....+.|||+||++.+...+...+.++|++++|+|++++.........| ..+... ...|+++++||+|+.......
T Consensus 80 ~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~~~~~~-~~~~iiivvNK~Dl~~~~~~~- 156 (203)
T cd01888 80 KLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-AALEIM-GLKHIIIVQNKIDLVKEEQAL- 156 (203)
T ss_pred ccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-HHHHHc-CCCcEEEEEEchhccCHHHHH-
Confidence 1156789999999988877777888999999999998742111111112 222221 234799999999997532211
Q ss_pred hhhhcCCCCccHHHHHHHHHHc--CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 131 LLSEQNLSPVKREQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
...++.+.+...+ ..++++++||++|+|++++++.|.+.+.++
T Consensus 157 ---------~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 157 ---------ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred ---------HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 1112333444332 236799999999999999999999877654
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-22 Score=158.75 Aligned_cols=162 Identities=20% Similarity=0.149 Sum_probs=111.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC---CCCCcccce-eeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS---FPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~t~-~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.|+++|.+++|||||+++|++.. ++.++.++. .+.....+..++ +.+.+||+||++.|......++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 479999999999999999999632 332322222 121122344455 67789999999999888888889999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC---CceeE
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR---AVKYM 158 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 158 (195)
+|+|+++....+... .+..+... ++| +++++||+|+....... ...+++..+...++ .++++
T Consensus 79 LVVDa~~G~~~qT~e--hl~il~~l--gi~~iIVVlNK~Dlv~~~~~~----------~~~~ei~~~l~~~~~~~~~~ii 144 (581)
T TIGR00475 79 LVVDADEGVMTQTGE--HLAVLDLL--GIPHTIVVITKADRVNEEEIK----------RTEMFMKQILNSYIFLKNAKIF 144 (581)
T ss_pred EEEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEECCCCCCHHHHH----------HHHHHHHHHHHHhCCCCCCcEE
Confidence 999999842222211 22233322 677 99999999997643210 12234555555542 37899
Q ss_pred EeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++||++|+|+++++..+.+.+.....
T Consensus 145 ~vSA~tG~GI~eL~~~L~~l~~~~~~ 170 (581)
T TIGR00475 145 KTSAKTGQGIGELKKELKNLLESLDI 170 (581)
T ss_pred EEeCCCCCCchhHHHHHHHHHHhCCC
Confidence 99999999999999998887665443
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-22 Score=138.26 Aligned_cols=163 Identities=20% Similarity=0.189 Sum_probs=108.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcc-----------cce---eecc---ceeEEeC--CEEEEEEEEeCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYV-----------PTV---FDNY---SAPFTVD--GIPVSLGLWDTAGQ 64 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~-----------~t~---~~~~---~~~~~~~--~~~~~l~~~D~~G~ 64 (195)
++..+|+++|+.++|||||+++|.......... ... .... ....... .....+.++|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 356899999999999999999998643211100 000 0000 1112222 34456779999999
Q ss_pred ccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
..|.......+..+|++|+|+|+.+....+... .+..+... ++|+++++||+|+...... . ...+.
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~--~l~~~~~~--~~p~ivvlNK~D~~~~~~~-~---------~~~~~ 146 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEE--HLKILREL--GIPIIVVLNKMDLIEKELE-E---------IIEEI 146 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHH--HHHHHHHT--T-SEEEEEETCTSSHHHHH-H---------HHHHH
T ss_pred cceeecccceecccccceeeeeccccccccccc--cccccccc--ccceEEeeeeccchhhhHH-H---------HHHHH
Confidence 998877777899999999999998765544332 34444444 7899999999999843211 0 11111
Q ss_pred HHHHHHHcC-----CceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 145 GQKLANKIR-----AVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 145 ~~~~~~~~~-----~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
...+.+.++ .++++++||.+|.|++++++.|.+.++
T Consensus 147 ~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 147 KEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 224444332 368999999999999999999998765
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=140.04 Aligned_cols=150 Identities=17% Similarity=0.138 Sum_probs=95.0
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccce-eEEeCCEEEEEEEEeCCCCcc----------ccccC
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQED----------YDRLR 71 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~~~D~~G~~~----------~~~~~ 71 (195)
..+..+|+++|.+|+|||||++++++..+...+.++....... .+..++ .+.+||+||... +..+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 4567899999999999999999999875333333333222111 122232 467999999532 22222
Q ss_pred CCCCC---CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHH
Q psy10443 72 PLSYP---QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKL 148 (195)
Q Consensus 72 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (195)
..+++ .++++++|+|++++-+..+.. +...+... +.|+++++||+|+....... ...++++.+
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~~~--~~pviiv~nK~D~~~~~~~~----------~~~~~i~~~ 157 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDLE--MLEWLRER--GIPVLIVLTKADKLKKSELN----------KQLKKIKKA 157 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCCHHHHH----------HHHHHHHHH
Confidence 23443 468999999998765544442 33444433 78999999999997543211 122344444
Q ss_pred HHHcC-CceeEEeccCCcccHH
Q psy10443 149 ANKIR-AVKYMECSALTQRGLR 169 (195)
Q Consensus 149 ~~~~~-~~~~~~~Sa~~~~~v~ 169 (195)
....+ ..+++++||++|+|++
T Consensus 158 l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 158 LKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HhhccCCCceEEEECCCCCCCC
Confidence 44442 2479999999999973
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >KOG0072|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-23 Score=130.29 Aligned_cols=165 Identities=20% Similarity=0.253 Sum_probs=123.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.++.+|+++|..|+|||++.-++.-++.. ...||.+.+.. .+.-++.++++||+.|+...+..|+.|+.+.|++|+
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 37899999999999999999888876653 33455544433 222366778899999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+|.+|.+........+..++.+. ..+..+++++||.|........+....+. ...+-+. .+.+|++||
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~--------l~~Lk~r--~~~Iv~tSA 161 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLG--------LQKLKDR--IWQIVKTSA 161 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhC--------hHHHhhh--eeEEEeecc
Confidence 999999888776655566666553 34678899999999876543322211111 1222222 278999999
Q ss_pred CCcccHHHHHHHHHHHHcCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~ 182 (195)
.+|+|+++.++|+.+.+.+.
T Consensus 162 ~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 162 VKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred ccccCCcHHHHHHHHHHhcc
Confidence 99999999999999887653
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-22 Score=154.00 Aligned_cols=152 Identities=20% Similarity=0.209 Sum_probs=109.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCc--------cccccCCCCCCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE--------DYDRLRPLSYPQ 77 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~--------~~~~~~~~~~~~ 77 (195)
+|+++|.+|||||||+++|++... ...+.+++.+.......+++.. +.+|||||.. .+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGRE--FILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeE--EEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998653 3445555555555666667765 5699999963 233344557889
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
+|++++|+|+.++....+. .+...++.. +.|+++|+||+|+..... . ..+ ...++..++
T Consensus 79 ad~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~~------------~----~~~-~~~lg~~~~ 137 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKEDA------------V----AAE-FYSLGFGEP 137 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCcccc------------c----HHH-HHhcCCCCe
Confidence 9999999999876444332 244445443 789999999999865421 1 111 234554578
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+++||++|.|++++++.+.+.+...
T Consensus 138 ~~vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 138 IPISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred EEEeCCcCCChHHHHHHHHHhcCcc
Confidence 9999999999999999999887654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-22 Score=159.81 Aligned_cols=161 Identities=17% Similarity=0.245 Sum_probs=110.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceee---ccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFD---NYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
.++.+|+++|..++|||||+++|....+.....+.... .+......++..+.+.||||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 36679999999999999999999987664332222211 112222333455788899999999999999889999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHH---HHHHc-CCce
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQK---LANKI-RAVK 156 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~ 156 (195)
+|+|+|+++....+... .| ..+.. .++|+++++||+|+...... . + .++... +...+ +.++
T Consensus 322 aILVVDA~dGv~~QT~E-~I-~~~k~--~~iPiIVViNKiDl~~~~~e-~---------v-~~eL~~~~ll~e~~g~~vp 386 (742)
T CHL00189 322 AILIIAADDGVKPQTIE-AI-NYIQA--ANVPIIVAINKIDKANANTE-R---------I-KQQLAKYNLIPEKWGGDTP 386 (742)
T ss_pred EEEEEECcCCCChhhHH-HH-HHHHh--cCceEEEEEECCCccccCHH-H---------H-HHHHHHhccchHhhCCCce
Confidence 99999998754333322 12 22222 37899999999998653210 0 0 001111 11222 2368
Q ss_pred eEEeccCCcccHHHHHHHHHHHH
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
++++||++|.|+++++++|....
T Consensus 387 vv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 387 MIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred EEEEECCCCCCHHHHHHhhhhhh
Confidence 99999999999999999988754
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=151.18 Aligned_cols=160 Identities=17% Similarity=0.150 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc----cc---CCCCCCCc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD----RL---RPLSYPQT 78 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~----~~---~~~~~~~~ 78 (195)
..|+++|.||||||||+++|++... ..+|..|+.......+.+.+. .+.+||+||..... .+ ....++.+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~--~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDT--RFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCe--EEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 4899999999999999999998643 245555665444555556554 56699999953211 11 11235679
Q ss_pred cEEEEEEeCCCh----hcHHHHHHhhHHHHhhh------------CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccH
Q psy10443 79 DVFLICYSVVSP----SSFDNVTSKWYPELKHH------------CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR 142 (195)
Q Consensus 79 d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~------------~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~ 142 (195)
+++|+|+|+++. +.+.+.. .|...+..+ ..+.|++||+||+|+..... . .
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~-~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e------------l-~ 303 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDID-ALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE------------L-A 303 (500)
T ss_pred CEEEEEECCcccccccCchhhHH-HHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH------------H-H
Confidence 999999999863 2333333 233333322 23689999999999865422 1 1
Q ss_pred HHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 143 EQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+.........+ ++++++||+++.|+++++.+|.+.+...+
T Consensus 304 e~l~~~l~~~g-~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 304 EFVRPELEARG-WPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHHHHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 11222223334 68999999999999999999999876543
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=148.50 Aligned_cols=156 Identities=19% Similarity=0.153 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCccc--cccC------CCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY--DRLR------PLSYPQ 77 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~--~~~~------~~~~~~ 77 (195)
.+|+++|.+|+|||||+|+|++.... .+...++.+.....+.+.+. ..+.+|||||..+. ...+ ...++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999986542 23334444444444555443 14569999997332 1111 223678
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
+|++++|+|++++.+...... |...+... ..+.|+++|+||+|+..... .... ....+...
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~---------------~~~~--~~~~~~~~ 338 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFE---------------PRID--RDEENKPI 338 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchh---------------HHHH--HHhcCCCc
Confidence 999999999999887766542 44444432 24789999999999864311 0000 01123122
Q ss_pred eEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
++.+||++|.|+++++++|.+.+..
T Consensus 339 ~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 339 RVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 5889999999999999999998753
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=156.50 Aligned_cols=161 Identities=17% Similarity=0.214 Sum_probs=108.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccce-eeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.++..|+++|..++|||||+++|....+.....+.. .......+.+++ ..+.|||||||+.|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 467899999999999999999998876654332222 111123344454 45679999999999999988899999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC-CceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR-AVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~S 161 (195)
+|||+++...-+... .| ..... .++|+++++||+|+...+.. .....+ .+...++..++ .++++++|
T Consensus 366 LVVdAddGv~~qT~e-~i-~~a~~--~~vPiIVviNKiDl~~a~~e-~V~~eL-------~~~~~~~e~~g~~vp~vpvS 433 (787)
T PRK05306 366 LVVAADDGVMPQTIE-AI-NHAKA--AGVPIIVAINKIDKPGANPD-RVKQEL-------SEYGLVPEEWGGDTIFVPVS 433 (787)
T ss_pred EEEECCCCCCHhHHH-HH-HHHHh--cCCcEEEEEECccccccCHH-HHHHHH-------HHhcccHHHhCCCceEEEEe
Confidence 999998753322222 12 22222 37999999999999653210 000000 00011122222 36899999
Q ss_pred cCCcccHHHHHHHHHHH
Q psy10443 162 ALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~ 178 (195)
|++|.|+++++++|...
T Consensus 434 AktG~GI~eLle~I~~~ 450 (787)
T PRK05306 434 AKTGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCCCchHHHHhhhhh
Confidence 99999999999998753
|
|
| >KOG4423|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-24 Score=140.94 Aligned_cols=165 Identities=25% Similarity=0.405 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEE-EEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIP-VSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~-~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+|++|+|.-|+|||+++.++....+...|..|.+..+ ...+..++.. +++++||.+||++|..+..-|++.+++..+|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 7999999999999999999999988888888887766 4555665544 7899999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh-----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH-----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (195)
+|++..-.++... .|.+.+... ...+|+++.+||||..+... ........+|+++++....++
T Consensus 106 fdvt~s~tfe~~s-kwkqdldsk~qLpng~Pv~~vllankCd~e~~a~-----------~~~~~~~d~f~kengf~gwte 173 (229)
T KOG4423|consen 106 FDVTRSLTFEPVS-KWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK-----------NEATRQFDNFKKENGFEGWTE 173 (229)
T ss_pred EEccccccccHHH-HHHHhccCcccCCCCCcchheeccchhccChHhh-----------hhhHHHHHHHHhccCccceee
Confidence 9999998888876 588887653 23588999999999866431 122467888999999889999
Q ss_pred eccCCcccHHHHHHHHHHHHcCCC
Q psy10443 160 CSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+|++.+.++.++-..+++.+....
T Consensus 174 ts~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 174 TSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred eccccccChhHHHHHHHHHHHhhc
Confidence 999999999999999999876554
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-21 Score=152.33 Aligned_cols=171 Identities=16% Similarity=0.210 Sum_probs=104.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc---eeEEe-C--------CEE-----EEEEEEeCCCCccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS---APFTV-D--------GIP-----VSLGLWDTAGQEDY 67 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~---~~~~~-~--------~~~-----~~l~~~D~~G~~~~ 67 (195)
++--|+++|.+++|||||+++|.+..+.....++...... ..... . ... ..+.||||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 4456999999999999999999987664332221111100 00000 0 011 13779999999999
Q ss_pred cccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhh---hhh--hc-------
Q psy10443 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLN---LLS--EQ------- 135 (195)
Q Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~---~~~--~~------- 135 (195)
..++..+++.+|++++|+|+++....+... .+..+.. .++|+++++||+|+...-.... ..+ ..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e--~i~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQE--ALNILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHH--HHHHHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 999888999999999999999743322221 1222332 2789999999999964211000 000 00
Q ss_pred -------------CCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 136 -------------NLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 136 -------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
.......+.........+.++++++||++|+|+++++++|....
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 00000000000111122347899999999999999999887543
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-21 Score=150.29 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=101.4
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCC--CCCC------------------------------cccceeeccceeEE
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDS--FPGE------------------------------YVPTVFDNYSAPFT 48 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~ 48 (195)
|+.++.++|+++|.+++|||||+++|+... +... ...++.+.... .
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~--~ 78 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHK--K 78 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeE--E
Confidence 788999999999999999999999998431 1110 01111111111 2
Q ss_pred eCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHh
Q psy10443 49 VDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRET 128 (195)
Q Consensus 49 ~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~ 128 (195)
+....+.+.+||+||++.|.......+..+|++++|+|++++.+.......++..+... ...|+++++||+|+......
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~ 157 (425)
T PRK12317 79 FETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEK 157 (425)
T ss_pred EecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHH
Confidence 23344677899999998886655566789999999999987322211111122233322 22468999999999752210
Q ss_pred hhhhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHHHH
Q psy10443 129 LNLLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLRQV 171 (195)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~ 171 (195)
.. ....+++..+....+ .++++++||++|+|+++.
T Consensus 158 ~~--------~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 158 RY--------EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HH--------HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 00 012244555555554 257999999999999873
|
|
| >KOG1673|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=124.65 Aligned_cols=167 Identities=23% Similarity=0.462 Sum_probs=135.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
-.+||.++|++..|||||+-.+.++.+.+++..+.+.++ ...+.+.+..+.+.+||++|++++..+.+....++-+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 468999999999999999999999988777777766665 5778889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
++|++.+..+..+.+ |....+..+...--++|++|.|..-..+++. .-.....++.+++..+ .+.+.+|+.
T Consensus 99 mFDLt~r~TLnSi~~-WY~QAr~~NktAiPilvGTKyD~fi~lp~e~-------Q~~I~~qar~YAk~mn-AsL~F~Sts 169 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKE-WYRQARGLNKTAIPILVGTKYDLFIDLPPEL-------QETISRQARKYAKVMN-ASLFFCSTS 169 (205)
T ss_pred EEecCchHHHHHHHH-HHHHHhccCCccceEEeccchHhhhcCCHHH-------HHHHHHHHHHHHHHhC-CcEEEeecc
Confidence 999999999999985 9888887765444466799999754322111 0012234667777777 589999999
Q ss_pred CcccHHHHHHHHHHHHc
Q psy10443 164 TQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~ 180 (195)
.+.|+++.|.-+.-.+.
T Consensus 170 ~sINv~KIFK~vlAklF 186 (205)
T KOG1673|consen 170 HSINVQKIFKIVLAKLF 186 (205)
T ss_pred ccccHHHHHHHHHHHHh
Confidence 99999999998766654
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-21 Score=143.31 Aligned_cols=162 Identities=22% Similarity=0.240 Sum_probs=122.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccc----------ccc-C
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY----------DRL-R 71 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~----------~~~-~ 71 (195)
.++||+++|-||+|||||+|++++.+ +..+..+|+.+.....+..+++.+. ++||+|-.+- ... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~--liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYV--LIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEE--EEECCCCCcccccccceEEEeehhh
Confidence 57999999999999999999999964 4566778889988889999999888 9999994322 111 2
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
...+..+|.+++|+|++.+-+.++.. ....+.+. +.+++|++||+|+.+.+.... ..-.+++.+....
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~--ia~~i~~~--g~~~vIvvNKWDl~~~~~~~~--------~~~k~~i~~~l~~ 322 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLR--IAGLIEEA--GRGIVIVVNKWDLVEEDEATM--------EEFKKKLRRKLPF 322 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHH--HHHHHHHc--CCCeEEEEEccccCCchhhHH--------HHHHHHHHHHhcc
Confidence 23466799999999999887777654 55666655 889999999999987532110 0112234444444
Q ss_pred cCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.+..+++.+||++|.|+.++|+.+.+...
T Consensus 323 l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 323 LDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred ccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 55578999999999999999999877554
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=154.08 Aligned_cols=154 Identities=14% Similarity=0.165 Sum_probs=111.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCC----------
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRP---------- 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~---------- 72 (195)
++.++|+++|++|+|||||+|+|++... ..++..++.+.....+..++ ..+.+||+||...+.....
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~ 78 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHH
Confidence 4578999999999999999999998643 24555555544444444444 4566999999877653211
Q ss_pred CC--CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 73 LS--YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 73 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
.+ ...+|++++|+|+++.+.... |...+.+. ++|+++++||+|+.+.. .. ..+.+++.+
T Consensus 79 ~~l~~~~aD~vI~VvDat~ler~l~----l~~ql~e~--giPvIvVlNK~Dl~~~~------------~i-~id~~~L~~ 139 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLERNLY----LTLQLLEL--GIPCIVALNMLDIAEKQ------------NI-RIDIDALSA 139 (772)
T ss_pred HHHhccCCCEEEEEecCCcchhhHH----HHHHHHHc--CCCEEEEEEchhhhhcc------------Cc-HHHHHHHHH
Confidence 12 247899999999998655332 33334333 79999999999986542 12 345667777
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
.++ ++++++|+++|+|++++++.+.+..
T Consensus 140 ~LG-~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 140 RLG-CPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred HhC-CCEEEEEeecCCCHHHHHHHHHHhh
Confidence 888 6999999999999999999988765
|
|
| >KOG0074|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=124.21 Aligned_cols=164 Identities=20% Similarity=0.270 Sum_probs=119.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.++++|+++|..++|||||+.+|.+... ..-.||.+.+. ..+.. +..+.+++||.+|+...+..|..|+.+.|++|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~-k~v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNT-KKVEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcce-EEEee-cCcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 5789999999999999999999997543 22333433332 23333 345789999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+|.+|...+++.-.++.+.+... ...+|+.+.+||.|+...-..++........ ..+...+.+-++|+
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~----------~lrdRswhIq~csa 161 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLA----------GLRDRSWHIQECSA 161 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchh----------hhhhceEEeeeCcc
Confidence 999999988888766565555543 4679999999999987653322221111110 11112366788999
Q ss_pred CCcccHHHHHHHHHHHHc
Q psy10443 163 LTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~ 180 (195)
.+++|+..-.+|+.+...
T Consensus 162 ls~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 162 LSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred ccccCccCcchhhhcCCC
Confidence 999999988888766543
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-21 Score=148.39 Aligned_cols=157 Identities=13% Similarity=0.082 Sum_probs=100.5
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhc--CCCCCCc------------------------------ccceeeccceeEEeC
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTT--DSFPGEY------------------------------VPTVFDNYSAPFTVD 50 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~--~~~~~~~------------------------------~~t~~~~~~~~~~~~ 50 (195)
.++.++|+++|+.++|||||+++|+. +.+.... ...+.+.. ...+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~--~~~~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVA--HWKFE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEE--EEEEc
Confidence 35679999999999999999999986 2221100 00111111 11223
Q ss_pred CEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHh-hHHHHhhhCCCCcEEEEeeCCCcccchHhh
Q psy10443 51 GIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSK-WYPELKHHCPDAPIILVGTKIDLREDRETL 129 (195)
Q Consensus 51 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~ 129 (195)
...+.+.+||+||++.|.......+..+|++++|+|+++.++....... +.... ......|+++++||+|+.......
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCCCeEEEEEEChhccCccHHH
Confidence 3446778999999998876666678899999999999987543211111 11222 222245799999999996422100
Q ss_pred hhhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHHH
Q psy10443 130 NLLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLRQ 170 (195)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~ 170 (195)
.....+++..+.+..+ .++++++||++|.|+.+
T Consensus 161 --------~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 161 --------FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred --------HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 0012345666666654 26799999999999986
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-21 Score=153.01 Aligned_cols=145 Identities=18% Similarity=0.236 Sum_probs=105.4
Q ss_pred cCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc------CCCCC--CCccEEEE
Q psy10443 13 GDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL------RPLSY--PQTDVFLI 83 (195)
Q Consensus 13 G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~------~~~~~--~~~d~~i~ 83 (195)
|++|+|||||+|++++... ..++..++.+.......+++.. +++||+||+.++... ...++ +.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998765 3445555555555556666655 569999999877543 22232 47899999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|+|+++.+.... +...+.+ .++|+++++||+|+.+.. .. ..+.+.+.+.++ ++++++||+
T Consensus 79 VvDat~ler~l~----l~~ql~~--~~~PiIIVlNK~Dl~~~~------------~i-~~d~~~L~~~lg-~pvv~tSA~ 138 (591)
T TIGR00437 79 VVDASNLERNLY----LTLQLLE--LGIPMILALNLVDEAEKK------------GI-RIDEEKLEERLG-VPVVPTSAT 138 (591)
T ss_pred EecCCcchhhHH----HHHHHHh--cCCCEEEEEehhHHHHhC------------CC-hhhHHHHHHHcC-CCEEEEECC
Confidence 999987543221 2223332 379999999999986532 12 234567777887 799999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRAV 179 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~ 179 (195)
+|+|++++++++.+..
T Consensus 139 tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 139 EGRGIERLKDAIRKAI 154 (591)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998764
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-21 Score=144.87 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=110.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc----c---CCCCCCCcc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR----L---RPLSYPQTD 79 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~----~---~~~~~~~~d 79 (195)
.|+++|.||||||||+|+|++... ...++.|+.......+...+. ..+.|+|+||...-.+ + ....++.++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 799999999999999999998643 345566665555555555432 2456999999643211 1 112467899
Q ss_pred EEEEEEeCC---ChhcHHHHHHhhHHHHhhhC---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 80 VFLICYSVV---SPSSFDNVTSKWYPELKHHC---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 80 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
++++|+|++ +.+.+.... .|+..+..+. .+.|+++|+||+|+..... ..+....+...++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~-~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-------------l~~~l~~l~~~~~ 305 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENAR-IIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-------------AEERAKAIVEALG 305 (390)
T ss_pred EEEEEeccCcccccChHHHHH-HHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-------------HHHHHHHHHHHhC
Confidence 999999998 344555544 3666666543 4689999999999865421 1223344444433
Q ss_pred C-ceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 154 A-VKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 154 ~-~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
. .+++.+||+++.|++++++.|.+.+.+.
T Consensus 306 ~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 306 WEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 2 3689999999999999999999988653
|
|
| >KOG0096|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=130.06 Aligned_cols=159 Identities=28% Similarity=0.417 Sum_probs=132.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCE-EEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGI-PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
.++++++|..|.|||+++.++..+.|...+.+|.+..........+. .+++..||++|++.+.....-++-+..+.|++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 68999999999999999999999999999999987776554444333 59999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
+|++..-.+..+.. |...+.+...++|+++.+||.|..... .......+-+... +.+++.||++
T Consensus 90 FdVtsr~t~~n~~r-whrd~~rv~~NiPiv~cGNKvDi~~r~--------------~k~k~v~~~rkkn-l~y~~iSaks 153 (216)
T KOG0096|consen 90 FDVTSRFTYKNVPR-WHRDLVRVRENIPIVLCGNKVDIKARK--------------VKAKPVSFHRKKN-LQYYEISAKS 153 (216)
T ss_pred eeeeehhhhhcchH-HHHHHHHHhcCCCeeeeccceeccccc--------------cccccceeeeccc-ceeEEeeccc
Confidence 99999999988874 888888777789999999999986642 1112222333333 7899999999
Q ss_pred cccHHHHHHHHHHHHc
Q psy10443 165 QRGLRQVFDEAVRAVL 180 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~ 180 (195)
+.|.+.-|-|+.+.+.
T Consensus 154 n~NfekPFl~LarKl~ 169 (216)
T KOG0096|consen 154 NYNFERPFLWLARKLT 169 (216)
T ss_pred ccccccchHHHhhhhc
Confidence 9999999999998764
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=127.14 Aligned_cols=153 Identities=20% Similarity=0.236 Sum_probs=102.7
Q ss_pred EEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCC-------CCCCCccEE
Q psy10443 11 VVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRP-------LSYPQTDVF 81 (195)
Q Consensus 11 v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~-------~~~~~~d~~ 81 (195)
++|.+|+|||||++++++.... ....+++............ ...+.+||+||...+..... .+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999986443 2222333232222222221 45677999999877654443 367889999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
++|+|+++..+..... +...... .+.|+++++||+|+.......... +.........+..+++++|
T Consensus 80 l~v~~~~~~~~~~~~~--~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~s 145 (163)
T cd00880 80 LFVVDADLRADEEEEK--LLELLRE--RGKPVLLVLNKIDLLPEEEEEELL----------ELRLLILLLLLGLPVIAVS 145 (163)
T ss_pred EEEEeCCCCCCHHHHH--HHHHHHh--cCCeEEEEEEccccCChhhHHHHH----------HHHHhhcccccCCceEEEe
Confidence 9999999987766653 2233322 378999999999997754311100 0011222333447899999
Q ss_pred cCCcccHHHHHHHHHHH
Q psy10443 162 ALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~ 178 (195)
++++.|+++++.++.+.
T Consensus 146 a~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 146 ALTGEGIDELREALIEA 162 (163)
T ss_pred eeccCCHHHHHHHHHhh
Confidence 99999999999998875
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=154.31 Aligned_cols=153 Identities=18% Similarity=0.169 Sum_probs=105.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccc--------cccCCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY--------DRLRPLSY 75 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~--------~~~~~~~~ 75 (195)
..+|+++|.+|||||||+++|++... ....+.++.+.......+++.. +.+|||||.+.. ......++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTD--FKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEE--EEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 35899999999999999999998653 2334444444444455556654 559999997632 12233457
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
+.+|++|+|+|+++.-. .....|...++. .+.|+++|+||+|+.... ......+...++
T Consensus 353 ~~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~---------------~~~~~~~~lg~~-- 411 (712)
T PRK09518 353 SLADAVVFVVDGQVGLT--STDERIVRMLRR--AGKPVVLAVNKIDDQASE---------------YDAAEFWKLGLG-- 411 (712)
T ss_pred HhCCEEEEEEECCCCCC--HHHHHHHHHHHh--cCCCEEEEEECcccccch---------------hhHHHHHHcCCC--
Confidence 89999999999986433 222235555654 389999999999985431 111222222333
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
..+++||++|.|+++++++|.+.+..
T Consensus 412 ~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 412 EPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CeEEEECCCCCCchHHHHHHHHhccc
Confidence 46799999999999999999998865
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-20 Score=131.36 Aligned_cols=150 Identities=19% Similarity=0.157 Sum_probs=101.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc-------cCCCCCCCcc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR-------LRPLSYPQTD 79 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-------~~~~~~~~~d 79 (195)
+|+++|.+|+|||||+++|++... ...+..++.......+.+++. .+++||+||...... ....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGA--KIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCe--EEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998652 344455554444455556664 566999999754321 1234688999
Q ss_pred EEEEEEeCCChhc-HHHHHHhhH-----------------------------------------HHHhhh----------
Q psy10443 80 VFLICYSVVSPSS-FDNVTSKWY-----------------------------------------PELKHH---------- 107 (195)
Q Consensus 80 ~~i~v~d~~~~~s-~~~~~~~~~-----------------------------------------~~~~~~---------- 107 (195)
++++|+|+++++. ...+.+ .+ ..++++
T Consensus 80 ~il~V~D~t~~~~~~~~~~~-~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 80 LILMVLDATKPEGHREILER-ELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred EEEEEecCCcchhHHHHHHH-HHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 9999999987653 222211 11 011111
Q ss_pred ---------------CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHH
Q psy10443 108 ---------------CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172 (195)
Q Consensus 108 ---------------~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 172 (195)
..-+|+++|+||+|+... ++...++.. .+++++||+++.|++++|
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----------------~~~~~~~~~---~~~~~~SA~~g~gi~~l~ 218 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----------------EELDLLARQ---PNSVVISAEKGLNLDELK 218 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----------------HHHHHHhcC---CCEEEEcCCCCCCHHHHH
Confidence 112699999999998643 233344433 358999999999999999
Q ss_pred HHHHHHHc
Q psy10443 173 DEAVRAVL 180 (195)
Q Consensus 173 ~~l~~~~~ 180 (195)
+.+.+.+-
T Consensus 219 ~~i~~~L~ 226 (233)
T cd01896 219 ERIWDKLG 226 (233)
T ss_pred HHHHHHhC
Confidence 99988653
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=141.28 Aligned_cols=151 Identities=20% Similarity=0.166 Sum_probs=113.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc---------ccCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD---------RLRPLSY 75 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~---------~~~~~~~ 75 (195)
..|+++|-||||||||+|||++... ..++++++.+.......+.+..+ .++||+|-+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f--~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREF--ILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceE--EEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 6799999999999999999999764 47788888888888888888874 599999965332 2233456
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
..||++|||+|....-+-.+. .....++. .+.|+++|+||+|-.... ....+.+...+ -
T Consensus 82 ~eADvilfvVD~~~Git~~D~--~ia~~Lr~--~~kpviLvvNK~D~~~~e---------------~~~~efyslG~--g 140 (444)
T COG1160 82 EEADVILFVVDGREGITPADE--EIAKILRR--SKKPVILVVNKIDNLKAE---------------ELAYEFYSLGF--G 140 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHH--HHHHHHHh--cCCCEEEEEEcccCchhh---------------hhHHHHHhcCC--C
Confidence 789999999999875443332 24455553 268999999999975331 11222233334 4
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.++.+||.+|.|+.++++.+.+.+.
T Consensus 141 ~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 141 EPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred CceEeehhhccCHHHHHHHHHhhcC
Confidence 6899999999999999999999984
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-21 Score=146.06 Aligned_cols=166 Identities=16% Similarity=0.148 Sum_probs=105.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccc------eeec-----------------cceeEEeCC------EEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPT------VFDN-----------------YSAPFTVDG------IPV 54 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t------~~~~-----------------~~~~~~~~~------~~~ 54 (195)
++.++|+++|..++|||||+++|.+... ..+... .... ++.....++ ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~-d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWT-DTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeec-ccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 5789999999999999999999975321 111000 0000 000000011 135
Q ss_pred EEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhh
Q psy10443 55 SLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSE 134 (195)
Q Consensus 55 ~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~ 134 (195)
.+.+||+||+++|...+......+|++++|+|++++........ .+..+... ...|+++++||+|+........
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~~~---- 154 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMALEII-GIKNIVIVQNKIDLVSKEKALE---- 154 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHHHHc-CCCeEEEEEEccccCCHHHHHH----
Confidence 77899999999998777777788999999999997531111121 22222221 2347899999999976432111
Q ss_pred cCCCCccHHHHHHHHHHc--CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 135 QNLSPVKREQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
..+++..+.... ..++++++||++|+|+++++++|...+..+
T Consensus 155 ------~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~ 198 (406)
T TIGR03680 155 ------NYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTP 198 (406)
T ss_pred ------HHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCC
Confidence 112333333332 236899999999999999999999877644
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.3e-21 Score=134.54 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=78.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCC-----------ccccee------ecc---ceeEEe---CCEEEEEEEEeCCCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGE-----------YVPTVF------DNY---SAPFTV---DGIPVSLGLWDTAGQ 64 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~-----------~~~t~~------~~~---~~~~~~---~~~~~~l~~~D~~G~ 64 (195)
+|+++|+.|+|||||+++|+....... +..+.. ..+ ...+.+ ++..+.+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987533211 011110 000 011111 355688999999999
Q ss_pred ccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
..|......++..+|++++|+|+++..+.... .++...... +.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~--~~~~~~~~~--~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE--RLIRHAILE--GLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccC
Confidence 99987778888999999999999887665432 243443332 58999999999986
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-20 Score=127.60 Aligned_cols=149 Identities=17% Similarity=0.113 Sum_probs=94.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--------CC---------CcccceeeccceeEEeCCEEEEEEEEeCCCCccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--------PG---------EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--------~~---------~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~ 67 (195)
+.++|+++|..++|||||+++|+.... .. ....++... ....+......+.|.|+||+..|
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~~ 78 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINT--AHVEYETANRHYAHVDCPGHADY 78 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEe--eeeEecCCCeEEEEEECcCHHHH
Confidence 358999999999999999999986310 00 001111111 11122223345669999999888
Q ss_pred cccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH
Q psy10443 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ 146 (195)
Q Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (195)
.......+..+|++++|+|++....-+... ++..+... ++| +++++||+|+........ ...+++.
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~~~~~~--~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~---------~~~~~i~ 145 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPMPQTRE--HLLLARQV--GVPYIVVFLNKADMVDDEELLE---------LVEMEVR 145 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCcEEEEEeCCCCCCcHHHHH---------HHHHHHH
Confidence 776777788999999999998753333222 33444443 566 778899999864322111 1223455
Q ss_pred HHHHHcC----CceeEEeccCCcccH
Q psy10443 147 KLANKIR----AVKYMECSALTQRGL 168 (195)
Q Consensus 147 ~~~~~~~----~~~~~~~Sa~~~~~v 168 (195)
.+....+ .++++++||++|.|.
T Consensus 146 ~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 146 ELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHhcccccCCeEEEeeCccccCC
Confidence 5555443 378999999999885
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-21 Score=145.43 Aligned_cols=168 Identities=26% Similarity=0.422 Sum_probs=128.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.++|+++|+.|+||||||..+....|+++-++. .+.+..+..+....+...+.|++..+.-+.....-++.||++.+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~r-l~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRR-LPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhcccccccc-CCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 68899999999999999999999998886543333 33334444444455556799998666555555667889999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHH-HHHHHHHHcCCc-eeE
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKRE-QGQKLANKIRAV-KYM 158 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~ 158 (195)
||+++++.+++.+..+|+..++... .++|+|+|+||.|...... .+.+ ........+..+ .++
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~------------~s~e~~~~pim~~f~EiEtci 153 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN------------NSDEVNTLPIMIAFAEIETCI 153 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc------------cchhHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999876 7899999999999977642 1112 233333333322 378
Q ss_pred EeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
+|||++-.++.++|....+++..+-.
T Consensus 154 ecSA~~~~n~~e~fYyaqKaVihPt~ 179 (625)
T KOG1707|consen 154 ECSALTLANVSELFYYAQKAVIHPTS 179 (625)
T ss_pred hhhhhhhhhhHhhhhhhhheeeccCc
Confidence 99999999999999998888876643
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=144.28 Aligned_cols=164 Identities=14% Similarity=0.071 Sum_probs=110.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc--CCCCCCcc------------cceeecc-ceeEEeCCEEEEEEEEeCCCCccccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT--DSFPGEYV------------PTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~--~~~~~~~~------------~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~ 69 (195)
+--||+++|+.++|||||+++|+. +.+...+. .+.+..+ .....+....+.+++||+||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 456999999999999999999986 33332211 0111111 12223344457788999999999998
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA 149 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (195)
.+..+++.+|++++|+|+++....+... ++..+.. .++|.++++||+|+........ .+++..+.
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~--~l~~a~~--~gip~IVviNKiD~~~a~~~~v-----------l~ei~~l~ 148 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRF--VTKKAFA--YGLKPIVVINKVDRPGARPDWV-----------VDQVFDLF 148 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHH--HHHHHHH--cCCCEEEEEECcCCCCCchhHH-----------HHHHHHHH
Confidence 8889999999999999998754333322 2233333 2789999999999865432111 11222221
Q ss_pred HH------cCCceeEEeccCCcc----------cHHHHHHHHHHHHcCCC
Q psy10443 150 NK------IRAVKYMECSALTQR----------GLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 150 ~~------~~~~~~~~~Sa~~~~----------~v~~~~~~l~~~~~~~~ 183 (195)
.. ...+|++.+||++|. |+..+++.|.+.+..+.
T Consensus 149 ~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 149 VNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred hccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 11 112679999999998 68999999999988775
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-20 Score=141.27 Aligned_cols=168 Identities=17% Similarity=0.153 Sum_probs=104.8
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCc----c-cceeecc-----------------ceeEEeC--C----EEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEY----V-PTVFDNY-----------------SAPFTVD--G----IPV 54 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~----~-~t~~~~~-----------------~~~~~~~--~----~~~ 54 (195)
+.+.++|+++|+.++|||||+.+|.+....... . -|....+ ......+ + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 467899999999999999999999653111100 0 1111110 0000001 1 135
Q ss_pred EEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChh-cHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 55 SLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPS-SFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 55 ~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
.+.+||+||++.|..........+|++++|+|++++. ..+... .+ ..+... ...|+++++||+|+.......
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l-~~l~~~-~i~~iiVVlNK~Dl~~~~~~~---- 158 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HL-MALDII-GIKNIVIVQNKIDLVSKERAL---- 158 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HH-HHHHHc-CCCcEEEEEEeeccccchhHH----
Confidence 7889999999988765555566789999999999653 222221 12 222222 124689999999997643210
Q ss_pred hcCCCCccHHHHHHHHHHc--CCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 134 EQNLSPVKREQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
...+++..+.... ...+++++||++|.|++++++.|.+.+..+.
T Consensus 159 ------~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~ 204 (411)
T PRK04000 159 ------ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTPE 204 (411)
T ss_pred ------HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCC
Confidence 1122334444332 2368999999999999999999998776543
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.5e-20 Score=137.38 Aligned_cols=153 Identities=24% Similarity=0.288 Sum_probs=115.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc--------CCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL--------RPLS 74 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--------~~~~ 74 (195)
..+|++++|.||+|||||+|.|.+.. +..+..+|+.+.....+.++|..++ +.||+|-.+.... ....
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~--l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVR--LVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEE--EEecCCcccCccHHHHHHHHHHHHH
Confidence 46899999999999999999999975 3467788999988999999997776 9999996544322 1234
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
+.+||.+++|+|++.+.+-.+.. .+. ....+.|+++|.||.|+..+... . .+ .....
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~--~~~---~~~~~~~~i~v~NK~DL~~~~~~--------------~---~~-~~~~~ 350 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLA--LIE---LLPKKKPIIVVLNKADLVSKIEL--------------E---SE-KLANG 350 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHH--HHH---hcccCCCEEEEEechhccccccc--------------c---hh-hccCC
Confidence 66899999999999874433332 222 23347899999999999886421 1 11 11222
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.+++.+|+++|+|++.+.+.|.+.+...
T Consensus 351 ~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 351 DAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred CceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 4689999999999999999999887655
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-20 Score=147.20 Aligned_cols=162 Identities=15% Similarity=0.101 Sum_probs=108.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc--CCCCCCcccc------------eeecc-ceeEEeCCEEEEEEEEeCCCCccccccCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT--DSFPGEYVPT------------VFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRP 72 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~--~~~~~~~~~t------------~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~ 72 (195)
||+++|+.++|||||+++|+. +.+....... .+..+ .....+....+++++|||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 799999999999999999986 3332211000 00111 11122233346777999999999988888
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI 152 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
.+++.+|++++|+|+++...-+ .. .|+..+... ++|+++++||+|+....... + .++...+...+
T Consensus 83 ~~l~~aD~alLVVDa~~G~~~q-T~-~~l~~a~~~--~ip~IVviNKiD~~~a~~~~----------v-~~ei~~l~~~~ 147 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPMPQ-TR-FVLKKALEL--GLKPIVVINKIDRPSARPDE----------V-VDEVFDLFAEL 147 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCcHH-HH-HHHHHHHHC--CCCEEEEEECCCCCCcCHHH----------H-HHHHHHHHHhh
Confidence 8999999999999998743222 22 244444443 78999999999986532110 1 12222222211
Q ss_pred ------CCceeEEeccCCcc----------cHHHHHHHHHHHHcCCCc
Q psy10443 153 ------RAVKYMECSALTQR----------GLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 153 ------~~~~~~~~Sa~~~~----------~v~~~~~~l~~~~~~~~~ 184 (195)
-.++++.+||++|. |+..+|+.+.+.+..+..
T Consensus 148 g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~ 195 (594)
T TIGR01394 148 GADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKG 195 (594)
T ss_pred ccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCC
Confidence 12579999999996 799999999999987753
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=142.74 Aligned_cols=169 Identities=18% Similarity=0.221 Sum_probs=102.1
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCccc----ceeeccceeEE---eCCEE-----E-----EEEEEeCCCCc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVP----TVFDNYSAPFT---VDGIP-----V-----SLGLWDTAGQE 65 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~----t~~~~~~~~~~---~~~~~-----~-----~l~~~D~~G~~ 65 (195)
+.++..|+++|.+++|||||+++|.+..+.....+ +.+..+..... ..+.. . .+.||||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 34667899999999999999999987654322221 11111110000 00111 1 15799999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCC---hhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhh---hhh------
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVS---PSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLN---LLS------ 133 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~---~~~------ 133 (195)
.|..++...+..+|++++|+|+++ +.++..+ ..+.. .++|+++++||+|+...-.... ..+
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 999888888889999999999997 4444333 22222 3789999999999852110000 000
Q ss_pred ----------------hcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 134 ----------------EQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 134 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
.+....+..+.........+.++++++||++|+|++++++.+...
T Consensus 156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 000000000000000011234789999999999999999887653
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-19 Score=145.37 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC---CCCCc--ccceeeccceeEEe-CCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS---FPGEY--VPTVFDNYSAPFTV-DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~---~~~~~--~~t~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
+-|.++|..++|||||+++|++.. +.++. ..|....+. .... ++. .+.+||+||+++|.......+..+|+
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~-~~~~~~g~--~i~~IDtPGhe~fi~~m~~g~~~~D~ 77 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYA-YWPQPDGR--VLGFIDVPGHEKFLSNMLAGVGGIDH 77 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeE-EEecCCCc--EEEEEECCCHHHHHHHHHHHhhcCCE
Confidence 358899999999999999998632 22221 222222111 1112 333 46799999999987666677889999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC--Ccee
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR--AVKY 157 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 157 (195)
+++|+|+++...-+... .+..+... ++| +++|+||+|+.+..... ...+++..+....+ ..++
T Consensus 78 ~lLVVda~eg~~~qT~e--hl~il~~l--gi~~iIVVlNKiDlv~~~~~~----------~v~~ei~~~l~~~~~~~~~i 143 (614)
T PRK10512 78 ALLVVACDDGVMAQTRE--HLAILQLT--GNPMLTVALTKADRVDEARIA----------EVRRQVKAVLREYGFAEAKL 143 (614)
T ss_pred EEEEEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEECCccCCHHHHH----------HHHHHHHHHHHhcCCCCCcE
Confidence 99999998743222221 22333332 455 57999999997532211 11234455554433 3689
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+++||++|.|++++++.|.+.....
T Consensus 144 i~VSA~tG~gI~~L~~~L~~~~~~~ 168 (614)
T PRK10512 144 FVTAATEGRGIDALREHLLQLPERE 168 (614)
T ss_pred EEEeCCCCCCCHHHHHHHHHhhccc
Confidence 9999999999999999998765443
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.3e-20 Score=129.23 Aligned_cols=151 Identities=16% Similarity=0.105 Sum_probs=92.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC--CCCCc------------------------------ccceeeccceeEEeCCEEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS--FPGEY------------------------------VPTVFDNYSAPFTVDGIPVS 55 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~~~~~~ 55 (195)
||+++|.+|+|||||+++|+... ...+. ..++.+.....+..++. .
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~--~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKR--K 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCc--e
Confidence 68999999999999999997532 11000 11111111122223333 5
Q ss_pred EEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhc
Q psy10443 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQ 135 (195)
Q Consensus 56 l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~ 135 (195)
+.+|||||++.|.......++.+|++++|+|++++..-+... ....+... ...++++++||+|+........
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~--~~~~~~~~-~~~~iIvviNK~D~~~~~~~~~----- 150 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRR--HSYILSLL-GIRHVVVAVNKMDLVDYSEEVF----- 150 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHH--HHHHHHHc-CCCcEEEEEEchhcccCCHHHH-----
Confidence 669999999888665666788999999999998764322211 22222222 1245788899999864321000
Q ss_pred CCCCccHHHHHHHHHHcCC--ceeEEeccCCcccHHHH
Q psy10443 136 NLSPVKREQGQKLANKIRA--VKYMECSALTQRGLRQV 171 (195)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~ 171 (195)
.....+.+.+...++. .+++++||++|.|+.+.
T Consensus 151 ---~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 151 ---EEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred ---HHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 0112344555555552 45899999999998753
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-20 Score=130.32 Aligned_cols=170 Identities=18% Similarity=0.122 Sum_probs=107.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC--CC----Ccccceee----------cc-ceeEEeCCEEEEEEEEeCCCCcccccc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF--PG----EYVPTVFD----------NY-SAPFTVDGIPVSLGLWDTAGQEDYDRL 70 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~--~~----~~~~t~~~----------~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~ 70 (195)
+|+++|..|+|||||+++|+...- .. ....+..+ .. .....+....+++++||+||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 689999999999999999976310 00 00001000 00 111222233456779999999999888
Q ss_pred CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhh--hhhh-cC-----------
Q psy10443 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLN--LLSE-QN----------- 136 (195)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~--~~~~-~~----------- 136 (195)
+..+++.+|++++|+|+++....+. . .+...+... ++|+++++||+|+...+...- .... ..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~-~-~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~ 156 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQT-R-ILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL 156 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHH-H-HHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence 8889999999999999998654332 2 244455443 789999999999874321100 0000 00
Q ss_pred -------------------------------CCCccHHHHH----HHHHHcCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 137 -------------------------------LSPVKREQGQ----KLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 137 -------------------------------~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
-...+.+++. +-...-..+|++..||.++.|++.+++.+.+.++.
T Consensus 157 ~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~ 236 (237)
T cd04168 157 APNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFPT 236 (237)
T ss_pred eeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcCC
Confidence 0012222221 11222344788889999999999999999988764
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-19 Score=125.53 Aligned_cols=164 Identities=18% Similarity=0.135 Sum_probs=97.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCccccee------------ecc---------c------------------eeEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVF------------DNY---------S------------------APFT 48 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~------------~~~---------~------------------~~~~ 48 (195)
||+++|+.++|||||+++|..+.+......... ... . ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997655321111100 000 0 0011
Q ss_pred eCCEEEEEEEEeCCCCccccccCCCCCC--CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 49 VDGIPVSLGLWDTAGQEDYDRLRPLSYP--QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 49 ~~~~~~~l~~~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
.. ...+.+.|+||++.|.......+. .+|++++|+|+.....-++. .++..+... ++|+++++||+|+....
T Consensus 81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~--~~l~~l~~~--~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTK--EHLGLALAL--NIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEECccccCHH
Confidence 11 245679999999988654444443 68999999999876443332 245555544 68999999999986543
Q ss_pred HhhhhhhhcC--CC----------CccHHHHHHHHH---HcCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 127 ETLNLLSEQN--LS----------PVKREQGQKLAN---KIRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 127 ~~~~~~~~~~--~~----------~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
.......... .. ..+.+++...+. ....+|+|.+|+.+|+|+++++..|..
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 3222111000 00 000001111111 112358999999999999999887643
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-20 Score=124.04 Aligned_cols=154 Identities=15% Similarity=0.070 Sum_probs=95.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccc----------cccCCCCC-
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDY----------DRLRPLSY- 75 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~----------~~~~~~~~- 75 (195)
.|+++|.+|+|||||++.+.+..+.....++...... .....++ .+.+||+||.... ......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 4899999999999999999965443333333322221 1122222 6779999995332 22222233
Q ss_pred --CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH-Hc
Q psy10443 76 --PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN-KI 152 (195)
Q Consensus 76 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 152 (195)
.+.+++++++|.++....... .....+... +.|+++++||+|+....... ..........+ ..
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~~~~----------~~~~~~~~~l~~~~ 143 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKSELA----------KALKEIKKELKLFE 143 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChHHHH----------HHHHHHHHHHHhcc
Confidence 346789999998765332221 122333332 58999999999986543211 11122222222 24
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
...+++++|++++.|++++++.|.+.
T Consensus 144 ~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 144 IDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHh
Confidence 44689999999999999999998875
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=117.21 Aligned_cols=136 Identities=23% Similarity=0.280 Sum_probs=96.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCC----ccccccCCCCCCCccEEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ----EDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~----~~~~~~~~~~~~~~d~~i~ 83 (195)
||+++|+.|+|||||+++|.+... .+..|... .+.+ .++||||. ..+..-......+||.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i------~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAI------EYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCcccee------Eecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 799999999999999999998643 22223211 1222 27899993 2233223334458999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|.|++++.+.-.-- +...+ +.|++=|+||+|+.... ...+..+++.+..|.-.+|++|+.
T Consensus 70 l~dat~~~~~~pP~--fa~~f-----~~pvIGVITK~Dl~~~~-------------~~i~~a~~~L~~aG~~~if~vS~~ 129 (143)
T PF10662_consen 70 LQDATEPRSVFPPG--FASMF-----NKPVIGVITKIDLPSDD-------------ANIERAKKWLKNAGVKEIFEVSAV 129 (143)
T ss_pred EecCCCCCccCCch--hhccc-----CCCEEEEEECccCccch-------------hhHHHHHHHHHHcCCCCeEEEECC
Confidence 99999875532211 22222 57999999999998432 334567778888887788999999
Q ss_pred CcccHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAV 176 (195)
Q Consensus 164 ~~~~v~~~~~~l~ 176 (195)
+|+|++++.+.|-
T Consensus 130 ~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 130 TGEGIEELKDYLE 142 (143)
T ss_pred CCcCHHHHHHHHh
Confidence 9999999998874
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-19 Score=140.04 Aligned_cols=158 Identities=17% Similarity=0.193 Sum_probs=121.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC-CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc------ccCCCC-C
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS-FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD------RLRPLS-Y 75 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~------~~~~~~-~ 75 (195)
++..+|+++|+||||||||.|++++.. ..+++++.+.+..+..+...+..+. +.|+||-=... ...+.| +
T Consensus 1 ~~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~--ivDLPG~YSL~~~S~DE~Var~~ll 78 (653)
T COG0370 1 MKKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIE--IVDLPGTYSLTAYSEDEKVARDFLL 78 (653)
T ss_pred CCcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEE--EEeCCCcCCCCCCCchHHHHHHHHh
Confidence 356679999999999999999999964 3588888998888888888888766 99999942221 111222 2
Q ss_pred -CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 76 -PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 76 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
.++|++|-|+|++|-+....+. ++.++- +.|++++.|+.|..+.. -..-+..++.+.++
T Consensus 79 ~~~~D~ivnVvDAtnLeRnLylt---lQLlE~---g~p~ilaLNm~D~A~~~-------------Gi~ID~~~L~~~LG- 138 (653)
T COG0370 79 EGKPDLIVNVVDATNLERNLYLT---LQLLEL---GIPMILALNMIDEAKKR-------------GIRIDIEKLSKLLG- 138 (653)
T ss_pred cCCCCEEEEEcccchHHHHHHHH---HHHHHc---CCCeEEEeccHhhHHhc-------------CCcccHHHHHHHhC-
Confidence 3679999999999887654432 233332 78999999999987753 22345677888898
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+|++++||++|.|++++...+.+....+.
T Consensus 139 vPVv~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 139 VPVVPTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred CCEEEEEeecCCCHHHHHHHHHHhccccc
Confidence 89999999999999999999988665554
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-19 Score=134.83 Aligned_cols=166 Identities=16% Similarity=0.161 Sum_probs=106.4
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCC-----------------CcccceeeccceeEEeCCEEEEEEEEeCCCCc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPG-----------------EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
.++.++|+++|..++|||||+++|++..... .....+.+. ....+......+.|+|+||++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHH
Confidence 3578999999999999999999998631100 001111111 112222233456799999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
+|.......+..+|++++|+|+++...-+... ++..+... ++| +++++||+|+....+... ...++
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~--~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~---------~i~~~ 153 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTRE--HILLARQV--GVPYLVVFLNKVDLVDDEELLE---------LVEME 153 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchhHHH--HHHHHHHc--CCCEEEEEEEecCCcchHHHHH---------HHHHH
Confidence 88766666677899999999998753333222 33344433 678 678899999874322111 11234
Q ss_pred HHHHHHHcC----CceeEEeccCCcc--------cHHHHHHHHHHHHcCCC
Q psy10443 145 GQKLANKIR----AVKYMECSALTQR--------GLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 145 ~~~~~~~~~----~~~~~~~Sa~~~~--------~v~~~~~~l~~~~~~~~ 183 (195)
+..+....+ .++++++||++|. ++.++++.+.+.+..+.
T Consensus 154 i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~ 204 (394)
T PRK12736 154 VRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPE 204 (394)
T ss_pred HHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCC
Confidence 555555554 2689999999983 67888888888776443
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-19 Score=124.39 Aligned_cols=172 Identities=13% Similarity=0.146 Sum_probs=99.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceee-ccc-eeEEeC-CEEEEEEEEeCCCCccccccC-----CCCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFD-NYS-APFTVD-GIPVSLGLWDTAGQEDYDRLR-----PLSYPQ 77 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~-~~~-~~~~~~-~~~~~l~~~D~~G~~~~~~~~-----~~~~~~ 77 (195)
++||+++|.+|+|||||+|.|++.........+... ... ....+. +....+.+||+||........ ...+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 579999999999999999999986543322212111 001 000111 112256799999965432221 223667
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH----HHHHHHH--
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ----GQKLANK-- 151 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-- 151 (195)
+|+++++.+ .++......|+..+... +.|+++|+||+|+..+.+......... +....++ .......
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~-~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFN-REQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhcccccccc-HHHHHHHHHHHHHHHHHHcC
Confidence 899888844 22334444567777665 689999999999965432110000000 0000111 1222222
Q ss_pred cCCceeEEeccC--CcccHHHHHHHHHHHHcCCCc
Q psy10443 152 IRAVKYMECSAL--TQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 152 ~~~~~~~~~Sa~--~~~~v~~~~~~l~~~~~~~~~ 184 (195)
....++|.+|+. .+.|+..+.+.+...+.+.+.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 223568999998 578999999999988876543
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.6e-19 Score=124.31 Aligned_cols=169 Identities=16% Similarity=0.264 Sum_probs=106.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcc---cceeeccceeEEeCCEEEEEEEEeCCCCcccccc-----CCCCCCCcc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYV---PTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL-----RPLSYPQTD 79 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~-----~~~~~~~~d 79 (195)
||+++|.++|||||+.+.++++..+.+.. +|....... .-....+.+++||+||+..+... ....+++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~--v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSH--VRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEE--EECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEE--EecCCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence 79999999999999999999865443322 222222111 11223457789999999766433 345678999
Q ss_pred EEEEEEeCCChhcHHHHHH--hhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC--Cc
Q psy10443 80 VFLICYSVVSPSSFDNVTS--KWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR--AV 155 (195)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~--~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 155 (195)
++|+|+|+.+.+-.+++.. ..+..+...+|+..+.++++|+|+..++......... .+.+.+.+...+ .+
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~------~~~i~~~~~~~~~~~~ 152 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDI------QQRIRDELEDLGIEDI 152 (232)
T ss_dssp EEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHH------HHHHHHHHHHTT-TSE
T ss_pred EEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHH------HHHHHHHhhhccccce
Confidence 9999999985543333331 2455566678999999999999998876654432221 122333333333 36
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcCCCcc
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
.++.||..+ +.+-++|..+++.+.+..+.
T Consensus 153 ~~~~TSI~D-~Sly~A~S~Ivq~LiP~~~~ 181 (232)
T PF04670_consen 153 TFFLTSIWD-ESLYEAWSKIVQKLIPNLST 181 (232)
T ss_dssp EEEEE-TTS-THHHHHHHHHHHTTSTTHCC
T ss_pred EEEeccCcC-cHHHHHHHHHHHHHcccHHH
Confidence 788899887 58999999999998866543
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.3e-19 Score=134.45 Aligned_cols=149 Identities=17% Similarity=0.114 Sum_probs=94.6
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCC-------C-----CC-----CcccceeeccceeEEeCCEEEEEEEEeCCCCc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDS-------F-----PG-----EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~-------~-----~~-----~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
.++.++|+++|..++|||||+++|++.. + .. .....+.+. ....+......+.|||+||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchH
Confidence 3578999999999999999999997420 0 00 001111111 122333344567799999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEE-EEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII-LVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~v-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
+|..........+|++++|+|+++....+... ++..+... ++|.+ +++||+|+........ ...++
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e--~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~---------~~~~~ 153 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTRE--HILLARQV--GVPYIVVFLNKCDMVDDEELLE---------LVEME 153 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCEEEEEEEecccCCHHHHHH---------HHHHH
Confidence 88765555667889999999998743333222 33333333 67765 6899999875432111 12235
Q ss_pred HHHHHHHcCC----ceeEEeccCCcc
Q psy10443 145 GQKLANKIRA----VKYMECSALTQR 166 (195)
Q Consensus 145 ~~~~~~~~~~----~~~~~~Sa~~~~ 166 (195)
+..+...++. ++++++||.+|.
T Consensus 154 i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 154 VRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHhcCCCccCccEEECcccccc
Confidence 6666666543 689999999874
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-19 Score=126.21 Aligned_cols=174 Identities=16% Similarity=0.127 Sum_probs=107.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCC--CcccceeeccceeEEeCCEEEEEEEEeCCCCcccc------------c
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPG--EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD------------R 69 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~------------~ 69 (195)
.+.+.|+|+|.||+|||||.|.+.+..... .-..|+.....+.++-+. ..+.|+||||--.-. +
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e--TQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE--TQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc--eEEEEecCCcccccchhhhHHHHHHhhh
Confidence 567899999999999999999999976532 333444555555555554 455699999932111 1
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhh-hhhcCCCCccH--HHH-
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNL-LSEQNLSPVKR--EQG- 145 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~-~~~~~~~~~~~--~~~- 145 (195)
-....+..||.+++|+|+++.....+.. .+..+.. ..++|-+++.||.|........-. ...+....+.. .++
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~-ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEE-YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHH-HhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 1223456799999999999744433221 2233322 247899999999998754432111 11122222221 111
Q ss_pred HHHHHHc------------CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 146 QKLANKI------------RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 146 ~~~~~~~------------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+.|...- ..-.+|.+||++|+|++++-++|+..+...
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 1111110 012378999999999999999998876544
|
|
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-19 Score=134.30 Aligned_cols=172 Identities=19% Similarity=0.191 Sum_probs=124.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC--CCC--------------Cccc-ceeeccceeEEeCCEEEEEEEEeCCCCccccc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS--FPG--------------EYVP-TVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~--~~~--------------~~~~-t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~ 69 (195)
-|+.|+-+-..|||||..+|+... ... ...+ |........+..++..+.++++|||||.+|..
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 478999999999999999987631 110 0111 11111111222357889999999999999999
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA 149 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (195)
.....+..|+|+|+|+|++...-.+...+.|+. +.. ++.++.|+||+|+..++... + ..+..++.
T Consensus 141 EVsRslaac~G~lLvVDA~qGvqAQT~anf~lA-fe~---~L~iIpVlNKIDlp~adpe~----------V-~~q~~~lF 205 (650)
T KOG0462|consen 141 EVSRSLAACDGALLVVDASQGVQAQTVANFYLA-FEA---GLAIIPVLNKIDLPSADPER----------V-ENQLFELF 205 (650)
T ss_pred eehehhhhcCceEEEEEcCcCchHHHHHHHHHH-HHc---CCeEEEeeeccCCCCCCHHH----------H-HHHHHHHh
Confidence 999999999999999999988777777664433 332 78999999999998875311 1 11222222
Q ss_pred HHcCCceeEEeccCCcccHHHHHHHHHHHHcCCCccccCCCceee
Q psy10443 150 NKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKRRQRKCVI 194 (195)
Q Consensus 150 ~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~~~~~c~~ 194 (195)
.. ..-+++.+||++|.|+++++++|++.++.+.-...+.-+|++
T Consensus 206 ~~-~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~plr~Li 249 (650)
T KOG0462|consen 206 DI-PPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAPLRMLI 249 (650)
T ss_pred cC-CccceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcchHHHh
Confidence 22 224789999999999999999999999999887776666655
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=132.70 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=104.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC-------CC--CC--------cccceeeccceeEEeCCEEEEEEEEeCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS-------FP--GE--------YVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~-------~~--~~--------~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~ 66 (195)
++.++|+++|.+++|||||+++|++.. +. .. ....+.+. ....+......+.|+|+||++.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCHHH
Confidence 568999999999999999999998621 00 00 00111111 1112222234566999999988
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEE-EEeeCCCcccchHhhhhhhhcCCCCccHHHH
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII-LVGTKIDLREDRETLNLLSEQNLSPVKREQG 145 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~v-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
|.......+..+|++++|+|+.+....+.. . ++..+... ++|.+ +++||+|+........ ...+++
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~-e-~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~---------~~~~ei 154 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQTR-E-HILLARQV--GVPYIVVFLNKCDMVDDEELLE---------LVEMEV 154 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhHH-H-HHHHHHHc--CCCeEEEEEEecCCcchHHHHH---------HHHHHH
Confidence 866666777899999999999875333322 1 33334332 67865 5799999974321111 122345
Q ss_pred HHHHHHcC----CceeEEeccCCcc----------cHHHHHHHHHHHHcCC
Q psy10443 146 QKLANKIR----AVKYMECSALTQR----------GLRQVFDEAVRAVLRP 182 (195)
Q Consensus 146 ~~~~~~~~----~~~~~~~Sa~~~~----------~v~~~~~~l~~~~~~~ 182 (195)
..+...++ .++++++||.+|. ++.++++.|.+.+..+
T Consensus 155 ~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p 205 (396)
T PRK12735 155 RELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEP 205 (396)
T ss_pred HHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCC
Confidence 55665553 2689999999984 6788888888776543
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-19 Score=126.16 Aligned_cols=152 Identities=15% Similarity=0.081 Sum_probs=90.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC--CCCC--------------C----------------cccceeeccceeEEeCCEEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD--SFPG--------------E----------------YVPTVFDNYSAPFTVDGIPVS 55 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~--~~~~--------------~----------------~~~t~~~~~~~~~~~~~~~~~ 55 (195)
+|+++|..++|||||+.+|+.. .... . ...++.+.....+..++ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 5899999999999999998642 1100 0 00111111112233333 56
Q ss_pred EEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhc-----H-HHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhh
Q psy10443 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSS-----F-DNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETL 129 (195)
Q Consensus 56 l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-----~-~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~ 129 (195)
+.+||+||+..|...+...+..+|++++|+|+++... . ......+ .... .....|+++++||+|+.......
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLAR-TLGVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHH-HcCCCeEEEEEEccccccccccH
Confidence 7799999998877666667788999999999998521 1 1111112 2222 22236899999999997421000
Q ss_pred hhhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHH
Q psy10443 130 NLLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLR 169 (195)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~ 169 (195)
... ....+++..+....+ .++++++||++|.|++
T Consensus 157 ~~~------~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERY------DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHH------HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 000 011123333344443 2679999999999986
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-18 Score=131.78 Aligned_cols=150 Identities=17% Similarity=0.126 Sum_probs=95.5
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCC--C---------------CcccceeeccceeEEeCCEEEEEEEEeCCCCc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFP--G---------------EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~---------------~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
.++.++|+++|.+++|||||+++|++.... . ....++.+... ..+......+.|.|+||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~--~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAH--VEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccE--EEEccCCeEEEEEECCChH
Confidence 467899999999999999999999864110 0 00111111111 1222223455699999998
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
.|.......+..+|++++|+|+.....-+... ++..+... ++| +++++||+|+........ ...++
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~--~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~---------~~~~~ 153 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTKE--HILLAKQV--GVPNIVVFLNKEDQVDDEELLE---------LVELE 153 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCEEEEEEEccCCCCHHHHHH---------HHHHH
Confidence 88666666778999999999998654333222 33344433 678 678899999975432111 12234
Q ss_pred HHHHHHHcC----CceeEEeccCCccc
Q psy10443 145 GQKLANKIR----AVKYMECSALTQRG 167 (195)
Q Consensus 145 ~~~~~~~~~----~~~~~~~Sa~~~~~ 167 (195)
+..+....+ .++++.+||.+|.+
T Consensus 154 l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 154 VRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHhCCCCCcceEEEcchhhccc
Confidence 555555544 27899999998863
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-18 Score=116.16 Aligned_cols=160 Identities=18% Similarity=0.148 Sum_probs=104.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccce-eEEeCCEEEEEEEEeCCC----------CccccccCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAG----------QEDYDRLRPL 73 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~~~D~~G----------~~~~~~~~~~ 73 (195)
....|+++|.+|||||||+|.|++..-......|.+.+... -+.+++. +.+.|.|| ++.+..+...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 34689999999999999999999965322333344333332 2344443 55999999 3333444445
Q ss_pred CCC---CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 74 SYP---QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 74 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
|++ +..++++++|+..+-...+. ..++.+... ++|+++++||+|.....+.... .....+.+..
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~---------l~~v~~~l~~ 166 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKSERNKQ---------LNKVAEELKK 166 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChhHHHHH---------HHHHHHHhcC
Confidence 554 35788999998876554444 366666665 8999999999999886542110 0111111111
Q ss_pred HcCCce--eEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 151 KIRAVK--YMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 151 ~~~~~~--~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
... .. ++.+|+..+.|++++...|.+.+..
T Consensus 167 ~~~-~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 167 PPP-DDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCC-ccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 122 22 7889999999999999999887654
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-18 Score=121.33 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=77.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC--CCCCcccce------------eecc---ceeEEeC--------CEEEEEEEEeCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTV------------FDNY---SAPFTVD--------GIPVSLGLWDTA 62 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~------------~~~~---~~~~~~~--------~~~~~l~~~D~~ 62 (195)
+|+++|..++|||||+.+|+... .......+. +... .....+. +..+.+++||+|
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 79999999999999999997532 111100000 0000 0112222 447889999999
Q ss_pred CCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
|+..|......+++.+|++++|+|+++....+... .+.. ... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~-~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQ-ALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHH-HHH--cCCCEEEEEECCCcc
Confidence 99999988888999999999999999876655432 1322 222 268999999999985
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=126.79 Aligned_cols=164 Identities=17% Similarity=0.142 Sum_probs=103.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC---CC--------------cccceeeccceeEEeCCEEEEEEEEeCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP---GE--------------YVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~---~~--------------~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~ 66 (195)
++.++|+++|..++|||||+++|++.... .. ....+.+. ....+......+.|.|+||+.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINT--AHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEee--eEEEEcCCCeEEEEEECCCHHH
Confidence 57899999999999999999999863110 00 01111111 1122222234566999999988
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEE-EEeeCCCcccchHhhhhhhhcCCCCccHHHH
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII-LVGTKIDLREDRETLNLLSEQNLSPVKREQG 145 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~v-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
|.......+..+|++++|+|+.+...-+... ++..+... ++|.+ +++||+|+........ ....++
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~--~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~---------~~~~~i 154 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQTRE--HILLARQV--GVPYIVVFLNKCDMVDDEELLE---------LVEMEV 154 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHHHH--HHHHHHHc--CCCEEEEEEeecCCcchHHHHH---------HHHHHH
Confidence 8766667788999999999998754333222 33444443 67876 5799999975322111 112234
Q ss_pred HHHHHHcC----CceeEEeccCCcc----------cHHHHHHHHHHHHcCC
Q psy10443 146 QKLANKIR----AVKYMECSALTQR----------GLRQVFDEAVRAVLRP 182 (195)
Q Consensus 146 ~~~~~~~~----~~~~~~~Sa~~~~----------~v~~~~~~l~~~~~~~ 182 (195)
..+....+ .++++.+||+++. ++..+++.|.+.+..+
T Consensus 155 ~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p 205 (396)
T PRK00049 155 RELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTP 205 (396)
T ss_pred HHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCC
Confidence 44444432 2689999999875 5677777777765433
|
|
| >KOG0077|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-19 Score=117.25 Aligned_cols=163 Identities=20% Similarity=0.299 Sum_probs=116.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.|.=|++++|..|+|||||++.|.+... .++.||.-.. +....+.+- +++-+|++||...+..|..|+..+|++++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPT-SE~l~Ig~m--~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPT-SEELSIGGM--TFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCC-hHHheecCc--eEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 3567999999999999999999998765 5566665333 334456664 55599999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc----------
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI---------- 152 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 152 (195)
.+|+-|.+.+.+...++...+... ..++|+++.+||+|...+....+...- ....+++-..
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~--------l~l~~~t~~~~~v~~~~~~~ 165 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFH--------LGLSNFTTGKGKVNLTDSNV 165 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHH--------HHHHHHhcccccccccCCCC
Confidence 999999999998876555555543 478999999999999776422111000 0011111111
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
..+.++.||...+.|.-+.|.|+.+.
T Consensus 166 rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 166 RPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CeEEEEEEEEEccCccceeeeehhhh
Confidence 11346778888888877777776654
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-17 Score=126.32 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=100.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC------CCC-----------CCcccceeeccceeEEeCCEEEEEEEEeCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD------SFP-----------GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~------~~~-----------~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~ 66 (195)
++.++|+++|..++|||||+++|.+. ... +.....+.+. ....+......+.|.|+||+..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCccc
Confidence 56799999999999999999999732 100 0001111111 1122323334566999999988
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHH
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQG 145 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
|.......+..+|++++|+|+++....+... .+..+... ++| +++++||+|+........ ...++.
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt~e--~l~~~~~~--gip~iIvviNKiDlv~~~~~~~---------~i~~~i 203 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQTKE--HILLARQV--GVPSLVVFLNKVDVVDDEELLE---------LVEMEL 203 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhHHH--HHHHHHHc--CCCeEEEEEEeeccCCHHHHHH---------HHHHHH
Confidence 7655555666899999999998754333322 33344433 678 468899999975322111 111233
Q ss_pred HHHHHHcC----CceeEEeccC---Cccc-------HHHHHHHHHHHHcCCC
Q psy10443 146 QKLANKIR----AVKYMECSAL---TQRG-------LRQVFDEAVRAVLRPE 183 (195)
Q Consensus 146 ~~~~~~~~----~~~~~~~Sa~---~~~~-------v~~~~~~l~~~~~~~~ 183 (195)
..+...++ .++++.+|+. +|.| +.++++.|.+.+..+.
T Consensus 204 ~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~ 255 (447)
T PLN03127 204 RELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPV 255 (447)
T ss_pred HHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCC
Confidence 33333322 2678888876 4444 6788888877765443
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-17 Score=124.74 Aligned_cols=172 Identities=19% Similarity=0.199 Sum_probs=124.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCC--CCC--------------Ccccceeeccce--eEEe-CCEEEEEEEEeCCCCcc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDS--FPG--------------EYVPTVFDNYSA--PFTV-DGIPVSLGLWDTAGQED 66 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~--~~~--------------~~~~t~~~~~~~--~~~~-~~~~~~l~~~D~~G~~~ 66 (195)
--|..++-+-..|||||..|+.... +.. ...+.+...... .+.. +|..|.++++|||||-.
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence 3477888899999999999987631 110 011111111111 2222 56889999999999999
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ 146 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (195)
|.......+..|.|+++|+|++..-..+.+.+ ....+.. ++-++-|+||+|+..++.. .-.+
T Consensus 89 FsYEVSRSLAACEGalLvVDAsQGveAQTlAN-~YlAle~---~LeIiPViNKIDLP~Adpe--------------rvk~ 150 (603)
T COG0481 89 FSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLALEN---NLEIIPVLNKIDLPAADPE--------------RVKQ 150 (603)
T ss_pred eEEEehhhHhhCCCcEEEEECccchHHHHHHH-HHHHHHc---CcEEEEeeecccCCCCCHH--------------HHHH
Confidence 99888899999999999999998877777776 3344443 6888999999999876531 1122
Q ss_pred HHHHH--cCCceeEEeccCCcccHHHHHHHHHHHHcCCCccccCCCceeeC
Q psy10443 147 KLANK--IRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKRRQRKCVII 195 (195)
Q Consensus 147 ~~~~~--~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~~~~~c~~~ 195 (195)
+...- +..-..+.+|||+|.|++++++.|++.++.++.......+++|+
T Consensus 151 eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pLkALif 201 (603)
T COG0481 151 EIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPLKALIF 201 (603)
T ss_pred HHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcceEEEE
Confidence 22222 23345789999999999999999999999999877777777764
|
|
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.8e-17 Score=116.67 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=111.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc----cCCCC---CCCcc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR----LRPLS---YPQTD 79 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~----~~~~~---~~~~d 79 (195)
.|-++|.||+|||||++.++.... ...|..|+....-..+.+++.. .+.+-|+||--+-.+ +-..| ++.++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 578999999999999999998643 4677888766555566666554 266999999543322 22223 45789
Q ss_pred EEEEEEeCCCh---hcHHHHHHhhHHHHhh---hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 80 VFLICYSVVSP---SSFDNVTSKWYPELKH---HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 80 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~---~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
.++||+|++.. ..++.... +...+.. ...+.|.++|+||+|+.+.. .....++.+.+.
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~eae---------------~~~l~~L~~~lq 340 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEAE---------------KNLLSSLAKRLQ 340 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhHH---------------HHHHHHHHHHcC
Confidence 99999999988 66666653 3333332 34578999999999986432 122466777777
Q ss_pred CceeEEeccCCcccHHHHHHHHHHH
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
...++++||++++|+.++++.|.+.
T Consensus 341 ~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 341 NPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred CCcEEEeeeccccchHHHHHHHhhc
Confidence 5558999999999999999988754
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-17 Score=127.30 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=94.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC------CCCCc-----------ccceeeccceeEEeCCEEEEEEEEeCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS------FPGEY-----------VPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~------~~~~~-----------~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~ 66 (195)
++.++|+++|..++|||||+++|+... ....+ ...+.+.....+..++ ..+.++|+||++.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~~ 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHHH
Confidence 567899999999999999999998521 11100 0011111111122233 4567999999999
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHH
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQG 145 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
|.......+..+|++++|+|+.+....+... ++..+... ++| +++++||+|+.......+ ...+++
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~e--~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~---------~i~~~i 223 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQTKE--HILLAKQV--GVPNMVVFLNKQDQVDDEELLE---------LVELEV 223 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEecccccCHHHHHH---------HHHHHH
Confidence 8766666777899999999998764443322 33444433 677 778899999975332111 112345
Q ss_pred HHHHHHc----CCceeEEeccCCccc
Q psy10443 146 QKLANKI----RAVKYMECSALTQRG 167 (195)
Q Consensus 146 ~~~~~~~----~~~~~~~~Sa~~~~~ 167 (195)
..+.... ..++++.+|+.++.+
T Consensus 224 ~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 224 RELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHhcCCCcCcceEEEEEcccccc
Confidence 5555543 237899999988753
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-17 Score=129.26 Aligned_cols=118 Identities=16% Similarity=0.176 Sum_probs=77.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc--CCCC--C-------------Ccccce---eecc-ceeEEeCCEEEEEEEEeCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT--DSFP--G-------------EYVPTV---FDNY-SAPFTVDGIPVSLGLWDTAG 63 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~--~~~~--~-------------~~~~t~---~~~~-~~~~~~~~~~~~l~~~D~~G 63 (195)
+..+|+++|.+++|||||.++|+. +... + .+.+.. +..+ .....+....+.+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 456999999999999999999964 2111 0 000000 0001 11122233346677999999
Q ss_pred CccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
+..|......+++.+|++|+|+|+++....+. . .+....... ++|+++++||+|+....
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t-~-~l~~~~~~~--~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT-R-KLMEVCRLR--DTPIFTFINKLDRDGRE 147 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCHHH-H-HHHHHHHhc--CCCEEEEEECCcccccC
Confidence 99988777778899999999999987543221 2 233444333 79999999999986533
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=135.89 Aligned_cols=118 Identities=17% Similarity=0.140 Sum_probs=80.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CC------C-----Ccccc---eeecc-ceeEEeCCEEEEEEEEeCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FP------G-----EYVPT---VFDNY-SAPFTVDGIPVSLGLWDTAGQED 66 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~------~-----~~~~t---~~~~~-~~~~~~~~~~~~l~~~D~~G~~~ 66 (195)
.+..||+|+|..|+|||||+++|+... .. . .+.+. ..... .....+....+.+++||+||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 355799999999999999999997531 00 0 00000 00000 01112222346778999999999
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
|...+..+++.+|++++|+|+++....+... .| ..+... ++|+++++||+|+...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~-~~~~~~--~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTET-VW-RQADRY--GIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HH-HHHHhc--CCCEEEEEECCCCCCC
Confidence 8888888999999999999999876655443 24 333333 7899999999998754
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=119.67 Aligned_cols=115 Identities=16% Similarity=0.152 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC--CCCCC--------cccceee--------cc---ceeEEeCCEEEEEEEEeCCCCc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD--SFPGE--------YVPTVFD--------NY---SAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~--~~~~~--------~~~t~~~--------~~---~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
-+|+++|.+|+|||||+++|+.. ..... ...+..+ .. .....+....+.+++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 47999999999999999999752 11100 0001111 00 1122334445677899999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
+|......+++.+|++|+|+|+++...... . .+...... .++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~-~-~i~~~~~~--~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT-R-KLFEVCRL--RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHH-H-HHHHHHHh--cCCCEEEEEECCccCCC
Confidence 887766777889999999999987543222 1 23344433 37899999999998654
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.1e-17 Score=126.38 Aligned_cols=157 Identities=14% Similarity=0.088 Sum_probs=93.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCCc----------cccee-----------------ecccee---EEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGEY----------VPTVF-----------------DNYSAP---FTVDG 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~----------~~t~~-----------------~~~~~~---~~~~~ 51 (195)
+..++|+++|..++|||||+++|+... ...+. ..++. ...+.. ..+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 567999999999999999999987632 11100 01100 000000 11122
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhh
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNL 131 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~ 131 (195)
....+.|+|+||++.|.......+..+|++++|+|++....-+... ++ ..+... ...|+++++||+|+...+....
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~-~~-~l~~~l-g~~~iIvvvNKiD~~~~~~~~~- 180 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR-HS-FIATLL-GIKHLVVAVNKMDLVDYSEEVF- 180 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchH-HH-HHHHHh-CCCceEEEEEeeccccchhHHH-
Confidence 2345679999999988655555578999999999998653222211 11 122221 1247899999999975321100
Q ss_pred hhhcCCCCccHHHHHHHHHHcC---CceeEEeccCCcccHHHH
Q psy10443 132 LSEQNLSPVKREQGQKLANKIR---AVKYMECSALTQRGLRQV 171 (195)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~ 171 (195)
....++...+....+ ..+++++||++|+|+.++
T Consensus 181 -------~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 181 -------ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred -------HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 011122333333332 368999999999998764
|
|
| >KOG3905|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-17 Score=117.49 Aligned_cols=170 Identities=16% Similarity=0.197 Sum_probs=125.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc---eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCc----
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS---APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT---- 78 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~---- 78 (195)
.-+|+|+|+.++|||||+.+|.+..-. .+..+..+. ..-...+...++.+|-+.|......+....+...
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e~~---KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSETV---KKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccccc---CCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 458999999999999999999986422 222222221 1122234457888999999876666655555432
Q ss_pred cEEEEEEeCCChhcHHHHHHhhHHHHhhhCC-------------------------------------------------
Q psy10443 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHCP------------------------------------------------- 109 (195)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~------------------------------------------------- 109 (195)
..+|++.|+++|+.+.+..++|...++++..
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 5788999999998887777778555443211
Q ss_pred -------------CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHH
Q psy10443 110 -------------DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAV 176 (195)
Q Consensus 110 -------------~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 176 (195)
++|++||++|||.....+.+..+.+.+...+ ...++.||..++ ...+.+|+++..|++-+...|.
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfi-q~~lRkFCLr~G-aaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFI-QSHLRKFCLRYG-AALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHH-HHHHHHHHHHcC-ceeEEeecccccchHHHHHHHH
Confidence 4799999999999887777777666665444 356889999999 5799999999999999999999
Q ss_pred HHHc
Q psy10443 177 RAVL 180 (195)
Q Consensus 177 ~~~~ 180 (195)
..++
T Consensus 287 hr~y 290 (473)
T KOG3905|consen 287 HRSY 290 (473)
T ss_pred HHhc
Confidence 8876
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.3e-17 Score=117.39 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=75.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCc-----ccce-ee--------c-----cceeEEeCCEEEEEEEEeCCCCcccc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEY-----VPTV-FD--------N-----YSAPFTVDGIPVSLGLWDTAGQEDYD 68 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~-----~~t~-~~--------~-----~~~~~~~~~~~~~l~~~D~~G~~~~~ 68 (195)
+|+++|.+|+|||||+++++........ ..++ .+ . ....+..++ +.+.+||+||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 5899999999999999998753211000 0010 00 0 011222333 567799999998887
Q ss_pred ccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 69 RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
..+..+++.+|++++|+|+++........ .|. .+... ++|.++++||+|....
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~-~~~~~--~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEK-LWE-FADEA--GIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHH-HHHHc--CCCEEEEEECCccCCC
Confidence 77778889999999999999875554332 232 33332 7899999999998754
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=116.31 Aligned_cols=144 Identities=17% Similarity=0.167 Sum_probs=90.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCC----------ccccee-eccceeEEeCCEEEEEEEEeCCCCccc------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGE----------YVPTVF-DNYSAPFTVDGIPVSLGLWDTAGQEDY------ 67 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~----------~~~t~~-~~~~~~~~~~~~~~~l~~~D~~G~~~~------ 67 (195)
-.++|+++|.+|+|||||+++|++..+... ..+|.. ......+..++..+.+.+|||||-..+
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999999765432 233332 222344556788889999999993322
Q ss_pred --------------------cccCCCCCC--CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 68 --------------------DRLRPLSYP--QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 68 --------------------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
...+...+. .+|+++++++.+.. .+....-.++..+.. ++|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~~---~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLSK---RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHhc---cCCEEEEEECCCcCCH
Confidence 111213344 46778888887642 222211124444443 6899999999999764
Q ss_pred hHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
.+.. ...+.+.+....++ ++++.....
T Consensus 159 ~e~~----------~~k~~i~~~l~~~~-i~~~~~~~~ 185 (276)
T cd01850 159 EELK----------EFKQRIMEDIEEHN-IKIYKFPED 185 (276)
T ss_pred HHHH----------HHHHHHHHHHHHcC-CceECCCCC
Confidence 4311 22344556666666 667665543
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-17 Score=117.71 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=111.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCc-cc-ceeeccceeEEeCCEEEEEEEEeCCCCcc-------ccccCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEY-VP-TVFDNYSAPFTVDGIPVSLGLWDTAGQED-------YDRLRPLS 74 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~-~~-t~~~~~~~~~~~~~~~~~l~~~D~~G~~~-------~~~~~~~~ 74 (195)
..+++|+++|..|+||||+||.|+++...+-. .+ ++.........++++. +.+||+||-++ ++.....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~--l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGEN--LVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccc--eEEecCCCcccchhhhHHHHHHHHHH
Confidence 57899999999999999999999976442211 11 1112212233455554 45999999544 56667778
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch-Hhhhh--hhhcCCCCccHH---HHHHH
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR-ETLNL--LSEQNLSPVKRE---QGQKL 148 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~-~~~~~--~~~~~~~~~~~~---~~~~~ 148 (195)
+...|.+++++++.|+.--.+.. +...+....-+.|+++++|++|...+. ++... ......+....+ ...++
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~--f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDED--FLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhhccEEEEeccCCCccccCCHH--HHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999875544433 334444443458999999999987663 00000 000000111111 22334
Q ss_pred HHHcCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 149 ANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 149 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
++. ..|++..|.+.+.|++.+...++..+....
T Consensus 193 ~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~e~ 225 (296)
T COG3596 193 FQE--VKPVVAVSGRLPWGLKELVRALITALPVEA 225 (296)
T ss_pred Hhh--cCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence 444 257888899999999999999999887443
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.6e-17 Score=124.93 Aligned_cols=159 Identities=12% Similarity=0.092 Sum_probs=95.5
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcC--CCCCC------------------------cccce-eeccc---eeEEeCCE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTD--SFPGE------------------------YVPTV-FDNYS---APFTVDGI 52 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~~------------------------~~~t~-~~~~~---~~~~~~~~ 52 (195)
+++.++|+++|+.++|||||+.+|+.. ..... ..+.. ....+ ....+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 467899999999999999999998762 11100 00000 00000 11122333
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhc---H---HHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccc
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSS---F---DNVTSKWYPELKHHCPDAP-IILVGTKIDLRED 125 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~ 125 (195)
...+.|+|+|||.+|.......+..+|++++|+|+++..- + ....++|. .+... ++| +++++||+|....
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~~--gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFTL--GVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHHc--CCCeEEEEEEccccccc
Confidence 4567799999999998777778889999999999986531 0 12222232 33332 666 6789999995321
Q ss_pred hHhhhhhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHHH
Q psy10443 126 RETLNLLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLRQ 170 (195)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~ 170 (195)
.-.+.. .....+++..+....+ .++++++|+.+|+|+.+
T Consensus 161 ~~~~~~------~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQER------YDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHH------HHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 100000 0011233444444333 27899999999999864
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-18 Score=114.84 Aligned_cols=120 Identities=16% Similarity=0.196 Sum_probs=73.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEe-CCEEEEEEEEeCCCCccccccCCC---CCCCccE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTV-DGIPVSLGLWDTAGQEDYDRLRPL---SYPQTDV 80 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~---~~~~~d~ 80 (195)
+.-.|+++|+.|+|||+|..+|..+.......+. ..+.. ..+ ....-.+.++|+|||++.+..... +..++.+
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 3457899999999999999999998543322222 22221 111 122334569999999998764433 4778999
Q ss_pred EEEEEeCCC-hhcHHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcccchH
Q psy10443 81 FLICYSVVS-PSSFDNVTSKWYPELKHH---CPDAPIILVGTKIDLREDRE 127 (195)
Q Consensus 81 ~i~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~ 127 (195)
+|||+|++. +..+.+..++++..+... ...+|++|++||+|+.....
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 999999974 455666666566655543 35799999999999976543
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=122.04 Aligned_cols=165 Identities=17% Similarity=0.171 Sum_probs=108.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeC-CEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVD-GIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
.++.=|+++|+-..|||||+..+-+.........-..... .+.+..+ +..-.+.|.|||||+.|..++..-..-+|.+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 4567799999999999999999988765432222222222 2223332 1223556999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+|+++.|.---+..+ -+..++. .++|+++++||+|..+.++.... .++...-+.. +.| .+...++++|
T Consensus 83 ILVVa~dDGv~pQTiE--AI~hak~--a~vP~iVAiNKiDk~~~np~~v~-~el~~~gl~~---E~~---gg~v~~VpvS 151 (509)
T COG0532 83 ILVVAADDGVMPQTIE--AINHAKA--AGVPIVVAINKIDKPEANPDKVK-QELQEYGLVP---EEW---GGDVIFVPVS 151 (509)
T ss_pred EEEEEccCCcchhHHH--HHHHHHH--CCCCEEEEEecccCCCCCHHHHH-HHHHHcCCCH---hhc---CCceEEEEee
Confidence 9999999853333332 1223333 38999999999999865431111 1111111111 111 1226799999
Q ss_pred cCCcccHHHHHHHHHHHH
Q psy10443 162 ALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~ 179 (195)
|++|+|+.+++..+.-..
T Consensus 152 A~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 152 AKTGEGIDELLELILLLA 169 (509)
T ss_pred ccCCCCHHHHHHHHHHHH
Confidence 999999999999876543
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.9e-17 Score=124.57 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=105.2
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcCCC---CCCc-cc-ceeeccce-----------eE---EeC------------
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSF---PGEY-VP-TVFDNYSA-----------PF---TVD------------ 50 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~~~---~~~~-~~-t~~~~~~~-----------~~---~~~------------ 50 (195)
+....++|.++|+-..|||||+..|++... .++. .. |....|.. .. ...
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 345789999999999999999999997421 1000 00 00000000 00 000
Q ss_pred C----EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChh-cHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 51 G----IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPS-SFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 51 ~----~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
+ ....+.|+|+|||+.|.......+..+|++++|+|++++. ..+.. +++ ..+... .-.|+++++||+|+...
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~~l-gi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVEIM-KLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHHHc-CCCcEEEEEecccccCH
Confidence 0 0235779999999998766666778999999999998742 22222 222 222222 12468899999999754
Q ss_pred hHhhhhhhhcCCCCccHHHHHHHHHH--cCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 126 RETLNLLSEQNLSPVKREQGQKLANK--IRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
..... ..+++..+... ....+++++||++|.|++.+++.|.+.+..+.
T Consensus 187 ~~~~~----------~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~ 236 (460)
T PTZ00327 187 AQAQD----------QYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIPK 236 (460)
T ss_pred HHHHH----------HHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCC
Confidence 32111 11233333322 13368999999999999999999998776553
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.8e-17 Score=115.81 Aligned_cols=158 Identities=22% Similarity=0.230 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCc-cccccCCC-------CCC-
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE-DYDRLRPL-------SYP- 76 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~-~~~~~~~~-------~~~- 76 (195)
.-|+|.|.||||||||++.+++... ..+|+.|+..-.-+-+..+ ..+++++||||-- +....... .++
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~--~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERG--YLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecC--CceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 4699999999999999999998654 3567777755444433333 3477799999932 11111111 111
Q ss_pred CccEEEEEEeCCChhcH--HHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 77 QTDVFLICYSVVSPSSF--DNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 77 ~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
-.++++|++|.+....+ +... +++..++.... .|+++|+||+|...... .+++.......+.
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~~f~-~p~v~V~nK~D~~~~e~--------------~~~~~~~~~~~~~ 310 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQI-SLLEEIKELFK-APIVVVINKIDIADEEK--------------LEEIEASVLEEGG 310 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHH-HHHHHHHHhcC-CCeEEEEecccccchhH--------------HHHHHHHHHhhcc
Confidence 25889999999875544 4444 46777777666 89999999999886532 2334444455554
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.....+++..+.+++.+...+.....+.
T Consensus 311 ~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 311 EEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred ccccceeeeehhhHHHHHHHHHHHhhch
Confidence 5567888999999998888877765444
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=124.57 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=77.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc--CCCCC--Cc------cccee----------ecc-ceeEEeCCEEEEEEEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT--DSFPG--EY------VPTVF----------DNY-SAPFTVDGIPVSLGLWDTA 62 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~--~~~~~--~~------~~t~~----------~~~-~~~~~~~~~~~~l~~~D~~ 62 (195)
.+..+|+++|.+++|||||+++|+. +.... .- ..+.. ..+ .....++...+.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999853 21110 00 00110 011 1112233445677899999
Q ss_pred CCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCccc
Q psy10443 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124 (195)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 124 (195)
|+..|......+++.+|++|+|+|+++... .....+...... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~--~~t~~l~~~~~~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE--TRTRKLMEVTRL--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC--HHHHHHHHHHHh--cCCCEEEEEECccccC
Confidence 999887766778899999999999987422 221224444443 3789999999999864
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.4e-17 Score=124.38 Aligned_cols=158 Identities=11% Similarity=0.074 Sum_probs=98.7
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCC--CCCCc----------------------ccce---eeccc---eeEEeCCE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDS--FPGEY----------------------VPTV---FDNYS---APFTVDGI 52 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~----------------------~~t~---~~~~~---~~~~~~~~ 52 (195)
.++.++|+++|+.++|||||+.+|+... ..... +.+. ....+ ....+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 3568999999999999999999887521 11000 0000 00000 01122334
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHH-------HHHHhhHHHHhhhCCCCc-EEEEeeCCCccc
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFD-------NVTSKWYPELKHHCPDAP-IILVGTKIDLRE 124 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~ 124 (195)
...+.++|+|||++|.......+..+|++|+|+|+++. .++ ....+| ..+.. .++| +++++||+|+..
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~-~~~~~--~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHA-LLAFT--LGVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHH-HHHHH--cCCCcEEEEEEcccCCc
Confidence 46777999999999988888889999999999999873 221 222222 22222 2664 688899999762
Q ss_pred chHhhhhhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHHH
Q psy10443 125 DRETLNLLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLRQ 170 (195)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~ 170 (195)
..-.... .....++++.+....+ .++++++||++|+|+.+
T Consensus 160 ~~~~~~~------~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKAR------YDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHH------HHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1100000 0012345667777665 36799999999999853
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-17 Score=118.23 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=75.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcC--CCCC-----------------CcccceeeccceeEEeCCEEEEEEEEeCCCCcccc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD--SFPG-----------------EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD 68 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~--~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~ 68 (195)
+|+++|.+|+|||||+++|+.. .... .....+.......+..++ ..+.+|||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 6899999999999999999742 1100 000111111112233344 456699999998888
Q ss_pred ccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 69 RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
..+..+++.+|++++|+|+++...-+.. .+...+... ++|+++++||+|+...
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t~--~~~~~~~~~--~~p~ivviNK~D~~~a 131 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQTE--TVWRQADRY--NVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 7788899999999999999875433322 233344433 6899999999998753
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.5e-17 Score=123.41 Aligned_cols=153 Identities=15% Similarity=0.094 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC--CCCCc----------ccce-------------ee----ccc---eeEEeCCEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS--FPGEY----------VPTV-------------FD----NYS---APFTVDGIPV 54 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~--~~~~~----------~~t~-------------~~----~~~---~~~~~~~~~~ 54 (195)
++|+++|..++|||||+.+|+... ..... ..+. .. ..+ ....+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999986531 11100 0000 00 000 0111122234
Q ss_pred EEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhh
Q psy10443 55 SLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSE 134 (195)
Q Consensus 55 ~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~ 134 (195)
.+.|+|+||++.|.......+..+|++++|+|++.....+... +| ..+... ...++++++||+|+........
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~-~~-~~~~~~-~~~~iivviNK~D~~~~~~~~~---- 153 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR-HS-YIASLL-GIRHVVLAVNKMDLVDYDEEVF---- 153 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH-HH-HHHHHc-CCCcEEEEEEecccccchHHHH----
Confidence 6679999999988655566788999999999998654333222 12 222221 1346889999999975321100
Q ss_pred cCCCCccHHHHHHHHHHcC--CceeEEeccCCcccHHH
Q psy10443 135 QNLSPVKREQGQKLANKIR--AVKYMECSALTQRGLRQ 170 (195)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~ 170 (195)
....++...+....+ .++++++||++|+|+.+
T Consensus 154 ----~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 154 ----ENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred ----HHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 011123333444433 25799999999999875
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-16 Score=115.88 Aligned_cols=81 Identities=21% Similarity=0.218 Sum_probs=54.3
Q ss_pred EEEEcCCCCchHHHHHHhhcCCCC-CCcccceeecccee---------------------EEeCC-EEEEEEEEeCCCC-
Q psy10443 9 CVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAP---------------------FTVDG-IPVSLGLWDTAGQ- 64 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~---------------------~~~~~-~~~~l~~~D~~G~- 64 (195)
|+++|.|+||||||+++|++.... .+|+.++....... ...++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987642 33333331111111 11233 3467899999997
Q ss_pred ---ccccccCCCC---CCCccEEEEEEeCCC
Q psy10443 65 ---EDYDRLRPLS---YPQTDVFLICYSVVS 89 (195)
Q Consensus 65 ---~~~~~~~~~~---~~~~d~~i~v~d~~~ 89 (195)
+++..+...+ ++++|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 4444443443 889999999999973
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=128.56 Aligned_cols=154 Identities=18% Similarity=0.117 Sum_probs=92.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCC----------cccceeecc----------------------ceeEEe
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGE----------YVPTVFDNY----------------------SAPFTV 49 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~----------~~~t~~~~~----------------------~~~~~~ 49 (195)
+..++|+++|.+++|||||+++|+... .... ...++.+.+ ...+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 567899999999999999999998632 1110 011100000 011222
Q ss_pred CCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhh
Q psy10443 50 DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETL 129 (195)
Q Consensus 50 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~ 129 (195)
++ ..+.|+|+||++.|.......+..+|++++|+|+++...-+... ....+... ...|+++++||+|+.......
T Consensus 102 ~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e--~~~~~~~~-~~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 102 PK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR--HSFIASLL-GIRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred CC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH--HHHHHHHh-CCCeEEEEEEecccccchhHH
Confidence 33 35569999999887655555678999999999997653322221 11222222 135788999999997522100
Q ss_pred hhhhhcCCCCccHHHHHHHHHHcC--CceeEEeccCCcccHHH
Q psy10443 130 NLLSEQNLSPVKREQGQKLANKIR--AVKYMECSALTQRGLRQ 170 (195)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~ 170 (195)
. .....+...+...++ ..+++++||++|.|+.+
T Consensus 177 ~--------~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 F--------DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred H--------HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 0 001123334444443 25689999999999874
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-15 Score=108.10 Aligned_cols=153 Identities=21% Similarity=0.197 Sum_probs=109.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc-------ccCCCCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD-------RLRPLSYPQ 77 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~-------~~~~~~~~~ 77 (195)
.-.++++|.|++|||||++.|++... ...|..|+.......+.++|-++. +.|+||--.-. ...-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQ--ild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQ--LLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEE--EEcCcccccCcccCCCCcceeeeeecc
Confidence 45899999999999999999999654 467888888777788888886555 99999832211 223456889
Q ss_pred ccEEEEEEeCCChhc-HHHHHHhh----------------------------------------HHHHhhh---C-----
Q psy10443 78 TDVFLICYSVVSPSS-FDNVTSKW----------------------------------------YPELKHH---C----- 108 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s-~~~~~~~~----------------------------------------~~~~~~~---~----- 108 (195)
||.+++|+|+....+ .+-+...+ ...++++ +
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999986655 32222211 1111111 0
Q ss_pred -----------------CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHH
Q psy10443 109 -----------------PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQV 171 (195)
Q Consensus 109 -----------------~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 171 (195)
.-+|.+.|+||.|+... ++...+.+.. ..+.+||..+.|++++
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-----------------e~~~~l~~~~---~~v~isa~~~~nld~L 280 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-----------------EELERLARKP---NSVPISAKKGINLDEL 280 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-----------------HHHHHHHhcc---ceEEEecccCCCHHHH
Confidence 02688999999998763 2333333333 5789999999999999
Q ss_pred HHHHHHHHc
Q psy10443 172 FDEAVRAVL 180 (195)
Q Consensus 172 ~~~l~~~~~ 180 (195)
.+.|.+.+-
T Consensus 281 ~e~i~~~L~ 289 (365)
T COG1163 281 KERIWDVLG 289 (365)
T ss_pred HHHHHHhhC
Confidence 999999874
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.7e-16 Score=125.62 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=79.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC--CCC--CCc---------------ccceeeccceeEEeCCEEEEEEEEeCCCCc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD--SFP--GEY---------------VPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~--~~~--~~~---------------~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
+-.||+++|.+++|||||+++|+.. ... ... ..++.......+.+++ +.+.+|||||+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~~ 86 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGHV 86 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCCc
Confidence 3459999999999999999999742 110 000 1111111122334444 566799999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
.+......+++.+|++++|+|+++....+... +...+... ++|+++++||+|+...
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~~~--~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSET--VWRQANRY--EVPRIAFVNKMDKTGA 142 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHHH--HHHHHHHc--CCCEEEEEECCCCCCC
Confidence 88777788899999999999999865544332 33334333 6899999999998753
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >KOG0090|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-16 Score=108.06 Aligned_cols=169 Identities=18% Similarity=0.203 Sum_probs=107.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCC---CccEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYP---QTDVF 81 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~---~~d~~ 81 (195)
++-.|+++|..+||||+|.-+|..+...+.+.+... -...+.+++.. +.++|.|||++.+.-...++. .+-++
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep--n~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP--NEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccCeeeeecc--ceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 345799999999999999999998754332221111 13344444444 459999999988765555555 78999
Q ss_pred EEEEeCCC-hhcHHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcccchHhhhhhhhc--C----------CCCccHHH-
Q psy10443 82 LICYSVVS-PSSFDNVTSKWYPELKHH---CPDAPIILVGTKIDLREDRETLNLLSEQ--N----------LSPVKREQ- 144 (195)
Q Consensus 82 i~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~--~----------~~~~~~~~- 144 (195)
+||+|... +....++.++++..+... ...+|++++.||.|+..+...+..-..+ + .+.+..++
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99999753 344455555566666554 3468999999999997544332211110 0 01111111
Q ss_pred ---------H--HHHHHHc-CCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 145 ---------G--QKLANKI-RAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 145 ---------~--~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
. ..|.+-. ..+.|.++|++++ +++++-+|+.+.
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 1 1222211 3367899999999 899999998875
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-15 Score=112.14 Aligned_cols=155 Identities=21% Similarity=0.198 Sum_probs=107.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeC-CEEEEEEEEeCCCCcc---------ccccCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVD-GIPVSLGLWDTAGQED---------YDRLRPLS 74 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~l~~~D~~G~~~---------~~~~~~~~ 74 (195)
-..|.++|-.|+|||||+|+|++... ..+.-.++-+..+....+. +..+ .+.||-|--+ |.+. -.-
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~v--lLtDTVGFI~~LP~~LV~AFksT-LEE 268 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKV--LLTDTVGFIRDLPHPLVEAFKST-LEE 268 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceE--EEecCccCcccCChHHHHHHHHH-HHH
Confidence 36899999999999999999998643 3444555555555555555 4444 4999988321 2221 122
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
...+|.++.|+|+++|.....+.. -...+.+. ....|+++|.||+|+..... .........
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----------------~~~~~~~~~ 330 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEE-----------------ILAELERGS 330 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchh-----------------hhhhhhhcC
Confidence 447999999999999966665553 44455543 35699999999999876531 111122221
Q ss_pred CceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
...+.+||++|.|++.+++.|.+.+...
T Consensus 331 -~~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 331 -PNPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred -CCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 1478999999999999999999987643
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-16 Score=99.16 Aligned_cols=104 Identities=23% Similarity=0.337 Sum_probs=70.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccc----------cccCCCCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY----------DRLRPLSY 75 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~----------~~~~~~~~ 75 (195)
+|+|+|.+|+|||||++.|++... .....+++.......+.+++..+. ++|+||-... ..... .+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~--~vDtpG~~~~~~~~~~~~~~~~~~~-~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFI--LVDTPGINDGESQDNDGKEIRKFLE-QI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEE--EEESSSCSSSSHHHHHHHHHHHHHH-HH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEE--EEeCCCCcccchhhHHHHHHHHHHH-HH
Confidence 689999999999999999998532 233334443333345566777765 9999995322 11222 34
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeC
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTK 119 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK 119 (195)
..+|++++|+|++++.. .... .++..++ .+.|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~~-~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDDK-NILRELK---NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHHH-HHHHHHH---TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHHH-HHHHHHh---cCCCEEEEEcC
Confidence 78999999999887422 1122 2444453 48999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-15 Score=103.75 Aligned_cols=164 Identities=16% Similarity=0.127 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCC-C--cccceeeccceeEEeCCEEEEEEEEeCCCCccccc-----------cCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPG-E--YVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR-----------LRP 72 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-----------~~~ 72 (195)
++|+++|.+|+||||++|.+++..... . ..+.+.........+++.. +.++||||-..... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~--i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRR--VNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeE--EEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999875321 1 1123333233344556655 45999999543321 112
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCC---CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP---DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA 149 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (195)
....++|++++|+++.+ .+..+. ..+..+..... -.++++++|+.|.......+.... ......+.+.
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d~--~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~------~~~~~l~~l~ 149 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEEE--QAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLE------NSCEALKRLL 149 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHHH--HHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHH------hccHHHHHHH
Confidence 23467899999999876 332222 23444443321 258899999999876532222111 1123455555
Q ss_pred HHcCCceeEEec-----cCCcccHHHHHHHHHHHHcCC
Q psy10443 150 NKIRAVKYMECS-----ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 150 ~~~~~~~~~~~S-----a~~~~~v~~~~~~l~~~~~~~ 182 (195)
+..+. .++..+ +..+.++.++++.+.+.+.+.
T Consensus 150 ~~c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 150 EKCGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred HHhCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 55553 343333 566889999999998888763
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-16 Score=96.77 Aligned_cols=137 Identities=22% Similarity=0.210 Sum_probs=98.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCC----CccccccCCCCCCCccEEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG----QEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G----~~~~~~~~~~~~~~~d~~i~ 83 (195)
||+++|..|+|||||.+.|.+... .+..|. -++++++. .+|+|| +..+.+-.......+|.+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQ------Ave~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQ------AVEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccc------eeeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 789999999999999999998643 222222 22333332 678998 33333333445668999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|-.++++++.-. ..+..-. ..|++=+++|.|+.++ .+-+..++|..+.|.-++|++|+.
T Consensus 71 v~~and~~s~f~------p~f~~~~-~k~vIgvVTK~DLaed--------------~dI~~~~~~L~eaGa~~IF~~s~~ 129 (148)
T COG4917 71 VHAANDPESRFP------PGFLDIG-VKKVIGVVTKADLAED--------------ADISLVKRWLREAGAEPIFETSAV 129 (148)
T ss_pred eecccCccccCC------ccccccc-ccceEEEEecccccch--------------HhHHHHHHHHHHcCCcceEEEecc
Confidence 999999877332 2222221 3468999999999875 234567888899998999999999
Q ss_pred CcccHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVR 177 (195)
Q Consensus 164 ~~~~v~~~~~~l~~ 177 (195)
++.|+++++..|..
T Consensus 130 d~~gv~~l~~~L~~ 143 (148)
T COG4917 130 DNQGVEELVDYLAS 143 (148)
T ss_pred CcccHHHHHHHHHh
Confidence 99999999988764
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-15 Score=122.62 Aligned_cols=116 Identities=15% Similarity=0.077 Sum_probs=79.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC--CC------CC-----------CcccceeeccceeEEeCCEEEEEEEEeCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD--SF------PG-----------EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~--~~------~~-----------~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~ 64 (195)
.+..+|+++|.+++|||||+++|+.. .. .. ....++.......+.+++. .+.++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~--~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGH--RINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCE--EEEEEcCCCH
Confidence 35578999999999999999999742 11 00 0111111111223344444 5569999999
Q ss_pred ccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
..+...+...++.+|++++|+|+++....+... .+..+... ++|+++++||+|+...
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~--i~~~~~~~--~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET--VWRQADKY--GVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECCCCCCC
Confidence 888777888889999999999998765443332 33334333 6899999999999754
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-15 Score=107.87 Aligned_cols=162 Identities=23% Similarity=0.218 Sum_probs=106.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc----ccCCCC---CCCcc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD----RLRPLS---YPQTD 79 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~----~~~~~~---~~~~d 79 (195)
.|-++|.|++|||||++.++.... ..+|+.|+.......+.+.+ .-.+.+=|.||--+-. -+-..| ++.+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 467999999999999999998643 47888888666555555522 2245599999843321 222223 34689
Q ss_pred EEEEEEeCCChhc---HHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 80 VFLICYSVVSPSS---FDNVTSKWYPELKHH---CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 80 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
+++.|+|++..+. .++... +...+..+ ..+.|.+||+||+|+..+.+ ........+.+..+
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~-i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e------------~~~~~~~~l~~~~~ 306 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQT-IRNELEKYSPKLAEKPRIVVLNKIDLPLDEE------------ELEELKKALAEALG 306 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHH-HHHHHHHhhHHhccCceEEEEeccCCCcCHH------------HHHHHHHHHHHhcC
Confidence 9999999986543 343332 44445444 34789999999999765532 11122333343333
Q ss_pred CceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
....+.+|+.+++|++++...+.+.+....
T Consensus 307 ~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 307 WEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred CCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 222223999999999999999888776553
|
|
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-15 Score=113.79 Aligned_cols=160 Identities=17% Similarity=0.226 Sum_probs=108.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCc-ccce--eeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEY-VPTV--FDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~-~~t~--~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
.++--|-++|.-..|||||+..|-+....... .+.+ ..-|..... +|..+. |.|||||..|..|+.....-+|.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iT--FLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSIT--FLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEE--EecCCcHHHHHHHHhccCccccE
Confidence 35667899999999999999999887654322 2222 112223333 565554 99999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc-CCceeEE
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI-RAVKYME 159 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 159 (195)
+++|+.+.|.---+.++ -+... ...++|+++.+||+|....++. ....++....+. ...+ |.+++++
T Consensus 228 vVLVVAadDGVmpQT~E--aIkhA--k~A~VpiVvAinKiDkp~a~pe-kv~~eL~~~gi~-------~E~~GGdVQvip 295 (683)
T KOG1145|consen 228 VVLVVAADDGVMPQTLE--AIKHA--KSANVPIVVAINKIDKPGANPE-KVKRELLSQGIV-------VEDLGGDVQVIP 295 (683)
T ss_pred EEEEEEccCCccHhHHH--HHHHH--HhcCCCEEEEEeccCCCCCCHH-HHHHHHHHcCcc-------HHHcCCceeEEE
Confidence 99999999864444433 11222 2348999999999998765431 111111101111 1122 4488999
Q ss_pred eccCCcccHHHHHHHHHHH
Q psy10443 160 CSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~ 178 (195)
+||++|.|++.+-+++.-.
T Consensus 296 iSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 296 ISALTGENLDLLEEAILLL 314 (683)
T ss_pred eecccCCChHHHHHHHHHH
Confidence 9999999999998886553
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=112.79 Aligned_cols=171 Identities=17% Similarity=0.232 Sum_probs=117.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEe---CCEEEEEEEEeCCCCccccccCCCCCCC----c
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTV---DGIPVSLGLWDTAGQEDYDRLRPLSYPQ----T 78 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~~~D~~G~~~~~~~~~~~~~~----~ 78 (195)
.-.|+|+|..++|||||+.+|.+.. .+.++.+-.|.+...- .+...++.+|-+.|...+..+....+.. -
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 4589999999999999999987643 3344444433321111 2234678999999877777666665553 2
Q ss_pred cEEEEEEeCCChhcHHHHHHhhHHHHhhhC--------------------------------------------------
Q psy10443 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHC-------------------------------------------------- 108 (195)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------------------------- 108 (195)
-.+|+|+|.+.|+.+-+...+|+..++...
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 578899999998777654444532221110
Q ss_pred -------------CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHH
Q psy10443 109 -------------PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEA 175 (195)
Q Consensus 109 -------------~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 175 (195)
-++|++||++|+|.....+.+..+.+.+...+ ..-++.||..+| ..++.||++...+++-++..|
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfI-qq~LR~~cL~yG-AsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFI-QQYLRTFCLKYG-ASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHH-HHHHHHHHHhcC-CeEEEeeccccccHHHHHHHH
Confidence 03799999999999876554443333332222 355788999999 578999999999999999998
Q ss_pred HHHHcC
Q psy10443 176 VRAVLR 181 (195)
Q Consensus 176 ~~~~~~ 181 (195)
...++.
T Consensus 260 ~h~l~~ 265 (472)
T PF05783_consen 260 LHRLYG 265 (472)
T ss_pred HHHhcc
Confidence 888764
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=118.27 Aligned_cols=116 Identities=14% Similarity=0.054 Sum_probs=77.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc--CCCC------C-----------CcccceeeccceeEEeCCEEEEEEEEeCCCCc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT--DSFP------G-----------EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~--~~~~------~-----------~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
+-.||+++|.+++|||||+++|+. +... . ....++.+.....+.+++ ..+.++||||+.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~~ 86 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGHV 86 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCcH
Confidence 446999999999999999999974 1110 0 011111222222344444 456699999998
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
.|.......++.+|++++|+|+......++.. ....+... ++|.++++||+|+....
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~--~~~~~~~~--~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSET--VWRQADKY--KVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHH--HHHHHHHc--CCCEEEEEECCCCCCCC
Confidence 87666666788999999999998765444432 23334333 68999999999987533
|
|
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-15 Score=112.42 Aligned_cols=165 Identities=21% Similarity=0.235 Sum_probs=108.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcc-cccc--------CC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED-YDRL--------RP 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~-~~~~--------~~ 72 (195)
...++|+++|.||||||||+|.|.+... ..+..+|+.+-....++++|.++. +.||+|-.+ -... -.
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~--L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVR--LSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEE--EEeccccccccCChhHHHhHHHHH
Confidence 3568999999999999999999999753 466677888888888999998777 999999544 1111 12
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHH-HhhHHHHhhh-------CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVT-SKWYPELKHH-------CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~-------~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
..+..+|++++|+|+...+.-+++. ...+.....- ...-|++++.||.|+..+-.... ..
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~------------~~ 411 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMT------------KI 411 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcccccc------------CC
Confidence 2356799999999994432222222 1122222211 12368999999999987622111 00
Q ss_pred HHHHHH--HcCCc-eeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 145 GQKLAN--KIRAV-KYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 145 ~~~~~~--~~~~~-~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
...+.. ..+.. .+.++|+++++|++.+...+.+.+...
T Consensus 412 ~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 412 PVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred ceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 000111 11112 356699999999999999888766533
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.3e-15 Score=108.70 Aligned_cols=161 Identities=17% Similarity=0.125 Sum_probs=98.6
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcC--CCCC---------------C---c----ccce---eeccc---eeEEeCC
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTD--SFPG---------------E---Y----VPTV---FDNYS---APFTVDG 51 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~---------------~---~----~~t~---~~~~~---~~~~~~~ 51 (195)
+.++.++++++|+..+|||||+.+|+.. .++. + + +.+. +...+ ....+..
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 3477899999999999999999998763 1111 0 0 0000 00000 0111233
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHH--H--HHhhHHHHhhhCCCCcEEEEeeCCCcccchH
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDN--V--TSKWYPELKHHCPDAPIILVGTKIDLREDRE 127 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~--~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 127 (195)
..+.+.+.|+|||..|-...-.....||++|+|+|+.+.+.... . ..+-...+.....--.++|++||+|..+-++
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 44678899999999998877888889999999999987631111 0 0011112222222356788899999987433
Q ss_pred hhhhhhhcCCCCccHHHHHHHHHHcCC----ceeEEeccCCcccHHH
Q psy10443 128 TLNLLSEQNLSPVKREQGQKLANKIRA----VKYMECSALTQRGLRQ 170 (195)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~v~~ 170 (195)
.... ....+...+.+..+. ++|+++|+..|+|+.+
T Consensus 163 ~rf~--------ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 163 ERFE--------EIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHH--------HHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 2110 112233334444432 5699999999999865
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-14 Score=108.79 Aligned_cols=82 Identities=23% Similarity=0.244 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEE---------------------eCC-EEEEEEEEeCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFT---------------------VDG-IPVSLGLWDTAG 63 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~---------------------~~~-~~~~l~~~D~~G 63 (195)
++|+++|.||||||||+++|++..+. .+|..++......... .++ ..+.+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987653 3454444222111111 112 236788999999
Q ss_pred C----ccccccCCCC---CCCccEEEEEEeCC
Q psy10443 64 Q----EDYDRLRPLS---YPQTDVFLICYSVV 88 (195)
Q Consensus 64 ~----~~~~~~~~~~---~~~~d~~i~v~d~~ 88 (195)
. .....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2333333344 78999999999997
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.8e-15 Score=119.73 Aligned_cols=108 Identities=20% Similarity=0.218 Sum_probs=71.7
Q ss_pred EcCCCCchHHHHHHhhcCC--CC--CCcc--cceeec-------------cceeEEeCCEEEEEEEEeCCCCccccccCC
Q psy10443 12 VGDGTVGKTCMLISYTTDS--FP--GEYV--PTVFDN-------------YSAPFTVDGIPVSLGLWDTAGQEDYDRLRP 72 (195)
Q Consensus 12 ~G~~~~GKtsli~~l~~~~--~~--~~~~--~t~~~~-------------~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~ 72 (195)
+|.+++|||||+++|.... .. .... .+..+. ....+.++ .+.+.+||+||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence 5999999999999995421 10 0000 011110 01123333 35677999999988877777
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
.+++.+|++++|+|+++........ .| ..+... ++|+++++||+|+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~-~~-~~~~~~--~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTET-VW-RQAEKY--GVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHH-HH-HHHHHc--CCCEEEEEECCCCCCC
Confidence 7889999999999999876555432 23 333332 7899999999998743
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-14 Score=106.72 Aligned_cols=129 Identities=16% Similarity=0.214 Sum_probs=87.8
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCCh----------hcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCc
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSP----------SSFDNVTSKWYPELKHH-CPDAPIILVGTKIDL 122 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~ 122 (195)
+.+.+||++|+...+..|..++.++++++||+|+++. ..+.+....|...+... ..+.|+++++||.|+
T Consensus 161 ~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~ 240 (317)
T cd00066 161 LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDL 240 (317)
T ss_pred eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHH
Confidence 5577999999999999999999999999999999874 44555554444444433 368999999999998
Q ss_pred ccchHhhhhhhhcCCC----CccHHHHHHHHHH-----c----CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 123 REDRETLNLLSEQNLS----PVKREQGQKLANK-----I----RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 123 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----~----~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
........-....-+. ..+.+.+..|... . ..+.+..++|.+..+++.+|+.+.+.+...
T Consensus 241 f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 241 FEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 6543322111111110 1223333333221 1 224567799999999999999999887654
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-14 Score=110.64 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=72.0
Q ss_pred EEEEeCCCCccc-----cccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhh
Q psy10443 56 LGLWDTAGQEDY-----DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLN 130 (195)
Q Consensus 56 l~~~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~ 130 (195)
+.|.||||-... .......+..+|+++||+|+++..+..+. .+...+.....+.|+++|+||+|+.....
T Consensus 232 IIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dree--- 306 (741)
T PRK09866 232 LTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRNS--- 306 (741)
T ss_pred EEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCccc---
Confidence 668999995432 11233468899999999999875444432 24555555433469999999999864211
Q ss_pred hhhhcCCCCccHHHHHHHHH------HcCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 131 LLSEQNLSPVKREQGQKLAN------KIRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
...+....+.. ......++++||+.|.|++.+++.|..
T Consensus 307 ---------ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 ---------DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ---------chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 11223333322 112346899999999999999999887
|
|
| >KOG1532|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-14 Score=100.66 Aligned_cols=175 Identities=21% Similarity=0.244 Sum_probs=96.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCc-------ccceee-ccceeEEe--------------------------
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEY-------VPTVFD-NYSAPFTV-------------------------- 49 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~-------~~t~~~-~~~~~~~~-------------------------- 49 (195)
.++.-|+|+|..||||||+++||...-..... +|.... .+...+.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 46789999999999999999998763211111 111100 00000000
Q ss_pred ---------------CCEEEEEEEEeCCCCcc-ccccCCCC-----CC--CccEEEEEEeCCC---hhcHHHHHHhhHHH
Q psy10443 50 ---------------DGIPVSLGLWDTAGQED-YDRLRPLS-----YP--QTDVFLICYSVVS---PSSFDNVTSKWYPE 103 (195)
Q Consensus 50 ---------------~~~~~~l~~~D~~G~~~-~~~~~~~~-----~~--~~d~~i~v~d~~~---~~s~~~~~~~~~~~ 103 (195)
....+...++|||||-+ |.+.-..+ +. ..-++++|+|... +..|-.-.-+--.+
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi 176 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI 176 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence 02224467999999854 33222111 11 2456777888643 22221111011111
Q ss_pred HhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCC----------C---ccHHHHHHHHHHcCCceeEEeccCCcccHHH
Q psy10443 104 LKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLS----------P---VKREQGQKLANKIRAVKYMECSALTQRGLRQ 170 (195)
Q Consensus 104 ~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 170 (195)
+- ...+|.+++.||+|+....-..++..+.+.. . +.......+-..+..+..+.+|+.+|.|.++
T Consensus 177 ly--ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~dd 254 (366)
T KOG1532|consen 177 LY--KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDD 254 (366)
T ss_pred HH--hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHH
Confidence 21 2479999999999998776544443221110 0 1111112233344556789999999999999
Q ss_pred HHHHHHHHHc
Q psy10443 171 VFDEAVRAVL 180 (195)
Q Consensus 171 ~~~~l~~~~~ 180 (195)
+|..+.+.+.
T Consensus 255 f~~av~~~vd 264 (366)
T KOG1532|consen 255 FFTAVDESVD 264 (366)
T ss_pred HHHHHHHHHH
Confidence 9999887764
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-14 Score=118.55 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=91.9
Q ss_pred CchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCC-E----------EE-----EEEEEeCCCCccccccCCCCCCCcc
Q psy10443 17 VGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDG-I----------PV-----SLGLWDTAGQEDYDRLRPLSYPQTD 79 (195)
Q Consensus 17 ~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~-~----------~~-----~l~~~D~~G~~~~~~~~~~~~~~~d 79 (195)
++||||+..+.+................ ..+..+. . .. .+.|||||||+.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 4599999999987654322222211111 1111110 0 01 2679999999999888878888999
Q ss_pred EEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHh--------------hhhhhhcC---------
Q psy10443 80 VFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRET--------------LNLLSEQN--------- 136 (195)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--------------~~~~~~~~--------- 136 (195)
++++|+|+++.-.-+... .+..+... ++|+++++||+|+...-.. .....+..
T Consensus 552 ivlLVVDa~~Gi~~qT~e--~I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~ 627 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIE--AINILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGK 627 (1049)
T ss_pred EEEEEEECcccCCHhHHH--HHHHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence 999999998732222221 22333333 6899999999998642110 00000000
Q ss_pred --CCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 137 --LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 137 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
......+.........+.++++++||++|+|+++++..|....
T Consensus 628 L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 628 LYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 0000000000001112457899999999999999998876543
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.3e-15 Score=105.64 Aligned_cols=126 Identities=17% Similarity=0.099 Sum_probs=74.5
Q ss_pred EEEEEeCCCCcccc---ccCCCC---CCC--ccEEEEEEeCCChhcHHHHHH-hhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 55 SLGLWDTAGQEDYD---RLRPLS---YPQ--TDVFLICYSVVSPSSFDNVTS-KWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 55 ~l~~~D~~G~~~~~---~~~~~~---~~~--~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
.+.+||+||+.++. ..+..+ +.. ++++++|+|++......+... .|+........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 46699999976643 222222 222 899999999976544333221 233332222347999999999999876
Q ss_pred hHhhhhhhhcCC----------CC-ccHHHHH---HHHHHcC-CceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 126 RETLNLLSEQNL----------SP-VKREQGQ---KLANKIR-AVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 126 ~~~~~~~~~~~~----------~~-~~~~~~~---~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.+.......... .. ...+-.. +..+.++ ..+++++|++++.|+++++++|.+.+.
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 544332111110 00 0011111 1222333 247899999999999999999988775
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-14 Score=106.19 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=87.1
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCCh----------hcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCc
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSP----------SSFDNVTSKWYPELKHH-CPDAPIILVGTKIDL 122 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~ 122 (195)
+.+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....|...+... ..+.|+++++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 3467999999999999999999999999999999973 34555554444444432 468999999999998
Q ss_pred ccchHhhhhhhhcCCC---CccHHHHHHHHH-----Hc-----CCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 123 REDRETLNLLSEQNLS---PVKREQGQKLAN-----KI-----RAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 123 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~-----~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
....-........-+. ..+.+.+..|.. .. ..+.++.++|.+..++..+|+.+.+.+....
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 7544322211111110 012233333222 11 1245677899999999999999888776543
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-14 Score=115.84 Aligned_cols=116 Identities=17% Similarity=0.088 Sum_probs=77.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CC---------CCcc-------cceeecc-ceeEEeCCEEEEEEEEeCCCCc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FP---------GEYV-------PTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~---------~~~~-------~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
+..||+++|+.++|||||+++|+... .. ..+. .|..... ......++..+.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 34699999999999999999997521 00 0111 1111111 1112245667888999999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCccc
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 124 (195)
.|.......++.+|++++|+|+.+....+... .|..... .+.|.++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~-~~~~~~~---~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTET-VLRQALK---ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHHH-HHHHHHH---cCCCEEEEEEChhccc
Confidence 98877778899999999999998753333222 2322222 2678899999999864
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.2e-14 Score=100.77 Aligned_cols=170 Identities=16% Similarity=0.134 Sum_probs=112.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC---C----------------------CCCcccceeeccceeEEeC----CEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS---F----------------------PGEYVPTVFDNYSAPFTVD----GIPVS 55 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~---~----------------------~~~~~~t~~~~~~~~~~~~----~~~~~ 55 (195)
.++||.++|.-..|||||...|++-- + ++-+.|. .......+... ...-+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~-~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPE-CYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCc-ccccCCCCCCCCCCccEEEE
Confidence 58999999999999999999998731 0 0001000 00000011111 12235
Q ss_pred EEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhc
Q psy10443 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQ 135 (195)
Q Consensus 56 l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~ 135 (195)
+.|.|.|||+-.-+...+...-.|++++|+.++.+..-....++ +..+.- ..-..++++.||.|+.....
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EH-l~AleI-igik~iiIvQNKIDlV~~E~-------- 157 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREH-LMALEI-IGIKNIIIVQNKIDLVSRER-------- 157 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHH-HHHHhh-hccceEEEEecccceecHHH--------
Confidence 77999999998766655566667999999999875433333222 222211 11357899999999987654
Q ss_pred CCCCccHHHHHHHHHHc--CCceeEEeccCCcccHHHHHHHHHHHHcCCCcccc
Q psy10443 136 NLSPVKREQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKR 187 (195)
Q Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~ 187 (195)
....++++.+|.+.- ...|++++||..+.|++-+++.|.+.+..+...-.
T Consensus 158 --AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~ 209 (415)
T COG5257 158 --ALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLD 209 (415)
T ss_pred --HHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCC
Confidence 224567788887754 23689999999999999999999999987766443
|
|
| >KOG1490|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-14 Score=108.74 Aligned_cols=164 Identities=20% Similarity=0.119 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCC---------CCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPL---------SYP 76 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~---------~~~ 76 (195)
-.++++|.|+||||||++.++.... ..+|..|+...+.+- ++-...++++.||||--..--.... ..+
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH--~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAH 246 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAH 246 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh--hhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence 4689999999999999999988754 245666665554432 3334467889999993221100011 111
Q ss_pred CccEEEEEEeCCChhcH--HHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 77 QTDVFLICYSVVSPSSF--DNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 77 ~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
--.+|+|+.|++....+ .+.. +++..++..+.+.|+++|+||+|+...... ....++..+...+.+.
T Consensus 247 LraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK~D~m~~edL----------~~~~~~ll~~~~~~~~ 315 (620)
T KOG1490|consen 247 LRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNKIDAMRPEDL----------DQKNQELLQTIIDDGN 315 (620)
T ss_pred hhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEEEeecccccCcccc----------CHHHHHHHHHHHhccC
Confidence 23678999999875443 3443 477888888889999999999999887541 1112234444455555
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
++++++|..+.+|+-++....++.+...+
T Consensus 316 v~v~~tS~~~eegVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 316 VKVVQTSCVQEEGVMDVRTTACEALLAAR 344 (620)
T ss_pred ceEEEecccchhceeeHHHHHHHHHHHHH
Confidence 88999999999999998888877766443
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=88.87 Aligned_cols=113 Identities=32% Similarity=0.367 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcc-cceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYV-PTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|+.|+|||+|+.++....+...+. +|.. +..+...+.+.++.+++|+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999998777654332 3322 3334456778889999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
+.++.+++..+ |...+... ..++|.++++||.|+... .....++. .+++++|+++
T Consensus 55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~------------~~~~~~~~---------~~~~~~s~~~ 110 (124)
T smart00010 55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEE------------RQVATEEG---------LEFAETSAKT 110 (124)
T ss_pred EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhh------------CcCCHHHH---------HHHHHHhCCC
Confidence 99999888654 55555443 346889999999997432 11222222 2355678899
Q ss_pred cccHH
Q psy10443 165 QRGLR 169 (195)
Q Consensus 165 ~~~v~ 169 (195)
+.|+.
T Consensus 111 ~~~~~ 115 (124)
T smart00010 111 PEEGE 115 (124)
T ss_pred cchhh
Confidence 98874
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-12 Score=99.21 Aligned_cols=165 Identities=16% Similarity=0.082 Sum_probs=108.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccce------------eec-cceeEEeCCEEEEEEEEeCCCCcccccc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTV------------FDN-YSAPFTVDGIPVSLGLWDTAGQEDYDRL 70 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~------------~~~-~~~~~~~~~~~~~l~~~D~~G~~~~~~~ 70 (195)
--||+++-.-..|||||+..|+... |.+...-.. +-. ..+...++-..+++++.|||||..|-..
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 3589999999999999999998742 222111110 000 1112233334477889999999999988
Q ss_pred CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
....+.-.|++++++|+.+..--+.-- .....+. .+++.++|+||+|....++..- . ++...+..
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMPQTrF-VlkKAl~---~gL~PIVVvNKiDrp~Arp~~V----------v-d~vfDLf~ 149 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMPQTRF-VLKKALA---LGLKPIVVINKIDRPDARPDEV----------V-DEVFDLFV 149 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCCchhh-hHHHHHH---cCCCcEEEEeCCCCCCCCHHHH----------H-HHHHHHHH
Confidence 888999999999999998753322211 0122222 2778888999999987654211 1 22223322
Q ss_pred HcCC------ceeEEeccCCcc----------cHHHHHHHHHHHHcCCCcc
Q psy10443 151 KIRA------VKYMECSALTQR----------GLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 151 ~~~~------~~~~~~Sa~~~~----------~v~~~~~~l~~~~~~~~~~ 185 (195)
.+++ .|++..|++.|. ++..+|+.|++.+..+...
T Consensus 150 ~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~ 200 (603)
T COG1217 150 ELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGD 200 (603)
T ss_pred HhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCC
Confidence 2222 678999988653 7899999999999888753
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-14 Score=102.77 Aligned_cols=125 Identities=17% Similarity=0.127 Sum_probs=61.5
Q ss_pred EEEEEeCCCCccccccCCCCC--------CCccEEEEEEeCCChhcHHHHHHhhHHHHh-hhCCCCcEEEEeeCCCcccc
Q psy10443 55 SLGLWDTAGQEDYDRLRPLSY--------PQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 55 ~l~~~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~vvv~nK~D~~~~ 125 (195)
...++|||||.++...+...- ...-++++++|+.-..+.......++..+. ...-++|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 356999999987754443322 445688899998644332222111222211 11237999999999999874
Q ss_pred hHhh--hhhhhcCC--------CCccHHHHHHHHHHcCCc-eeEEeccCCcccHHHHHHHHHHHH
Q psy10443 126 RETL--NLLSEQNL--------SPVKREQGQKLANKIRAV-KYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 126 ~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
.... ....+... .....+.+.++...++.. .++.+|+.+++|+.+++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 3111 11111000 001111223333344555 799999999999999999987754
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-13 Score=95.85 Aligned_cols=96 Identities=23% Similarity=0.321 Sum_probs=75.8
Q ss_pred ccccccCCCCCCCccEEEEEEeCCChh-cHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHH
Q psy10443 65 EDYDRLRPLSYPQTDVFLICYSVVSPS-SFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKRE 143 (195)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 143 (195)
+++..+.+.+++++|++++|+|++++. ++..+. +|+..+.. .++|+++|+||+|+..... ...+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~-r~l~~~~~--~~i~~vIV~NK~DL~~~~~------------~~~~ 88 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLD-RFLVVAEA--QNIEPIIVLNKIDLLDDED------------MEKE 88 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHH-HHHHHHHH--CCCCEEEEEECcccCCCHH------------HHHH
Confidence 688888899999999999999999988 777776 58776654 4899999999999975422 2223
Q ss_pred HHHHHHHHcCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 144 QGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 144 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
....+. ..+ .+++++||++|.|++++|..+..
T Consensus 89 ~~~~~~-~~g-~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 89 QLDIYR-NIG-YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHHHHH-HCC-CeEEEEecCCchhHHHHHhhhcC
Confidence 344443 455 68999999999999999988764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-12 Score=88.72 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=61.3
Q ss_pred EEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcE--EEEeeCCCcccchHhhhhhh
Q psy10443 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPI--ILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 56 l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~--vvv~nK~D~~~~~~~~~~~~ 133 (195)
..++++.|........+ . -++.+|.|+|+.+.++.... +.. ++.. ++++||+|+.....
T Consensus 94 ~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~~---~~~-------qi~~ad~~~~~k~d~~~~~~------ 154 (199)
T TIGR00101 94 MVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPRK---GGP-------GITRSDLLVINKIDLAPMVG------ 154 (199)
T ss_pred EEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhhh---hHh-------HhhhccEEEEEhhhcccccc------
Confidence 34667767322222211 1 25889999999876653321 111 2333 88899999975311
Q ss_pred hcCCCCccHHHHHHHHHH-cCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 134 EQNLSPVKREQGQKLANK-IRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
...+...+..+. .+..+++++||++|+|++++++++.+.+.
T Consensus 155 ------~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 155 ------ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred ------ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 112223333333 34478999999999999999999987643
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=92.60 Aligned_cols=142 Identities=18% Similarity=0.182 Sum_probs=82.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.++..|+++|.+|+|||||++.+.+..-..... .....+ .+ ......++.++|+||.. .. .....+.+|.+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~-~~~g~i--~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVll 109 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNIS-DIKGPI--TV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLL 109 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccc-cccccE--EE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEEE
Confidence 457889999999999999999998642111000 000001 11 11234456699999853 11 1233578999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcE-EEEeeCCCcccchHhhhhhhhcCCCCccHHHHHH-HHH-HcCCceeEEe
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPI-ILVGTKIDLREDRETLNLLSEQNLSPVKREQGQK-LAN-KIRAVKYMEC 160 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~ 160 (195)
|+|++.....+.. .++..+... +.|. ++++||.|+........ ...++++. +.. .....+++.+
T Consensus 110 viDa~~~~~~~~~--~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~---------~~~~~l~~~~~~~~~~~~ki~~i 176 (225)
T cd01882 110 LIDASFGFEMETF--EFLNILQVH--GFPRVMGVLTHLDLFKKNKTLR---------KTKKRLKHRFWTEVYQGAKLFYL 176 (225)
T ss_pred EEecCcCCCHHHH--HHHHHHHHc--CCCeEEEEEeccccCCcHHHHH---------HHHHHHHHHHHHhhCCCCcEEEE
Confidence 9999865443332 244555443 5675 45999999875422110 01122222 322 2344689999
Q ss_pred ccCCc
Q psy10443 161 SALTQ 165 (195)
Q Consensus 161 Sa~~~ 165 (195)
||++.
T Consensus 177 Sa~~~ 181 (225)
T cd01882 177 SGIVH 181 (225)
T ss_pred eeccC
Confidence 98876
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=95.30 Aligned_cols=159 Identities=14% Similarity=0.098 Sum_probs=101.4
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCC--C----------CCcccceeec-----------------cceeEEe--
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSF--P----------GEYVPTVFDN-----------------YSAPFTV-- 49 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~--~----------~~~~~t~~~~-----------------~~~~~~~-- 49 (195)
|+++..++.+-+|.-.-||||||.||+...- . .....+.+.. ++..+.+
T Consensus 1 ~~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRy 80 (431)
T COG2895 1 QQHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRY 80 (431)
T ss_pred CCcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeee
Confidence 4567789999999999999999999988520 0 0000111110 0111111
Q ss_pred -CCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHh
Q psy10443 50 -DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRET 128 (195)
Q Consensus 50 -~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~ 128 (195)
.-.+-++.+-|||||+.|....-.....||++|+++|+-.. ..+.. +-...+.....-..+++.+||+|+...++.
T Consensus 81 FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QT-rRHs~I~sLLGIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 81 FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQT-RRHSFIASLLGIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHh-HHHHHHHHHhCCcEEEEEEeeecccccCHH
Confidence 11223566999999999988777888899999999998543 32222 122233332234678899999999886542
Q ss_pred hhhhhhcCCCCccHHHHHHHHHHcCC--ceeEEeccCCcccHHH
Q psy10443 129 LNLLSEQNLSPVKREQGQKLANKIRA--VKYMECSALTQRGLRQ 170 (195)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~ 170 (195)
... ....+-..|+..++. ..+++.||..|+|+-.
T Consensus 158 ~F~--------~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 158 VFE--------AIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHH--------HHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 221 122345667777764 4589999999999753
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.8e-13 Score=108.75 Aligned_cols=116 Identities=15% Similarity=0.099 Sum_probs=76.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCCCccc-ce-----e------ecc---ceeE--EeCCEEEEEEEEeCCCCc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVP-TV-----F------DNY---SAPF--TVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~-t~-----~------~~~---~~~~--~~~~~~~~l~~~D~~G~~ 65 (195)
+--+|+++|+.++|||||+.+|+... ....... +. . ... ...+ ..++..+.+.|+||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 34589999999999999999997531 1111000 00 0 000 0111 224456778899999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCccc
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 124 (195)
.|.......++.+|++|+|+|+......+... .|...... +.|.++++||+|...
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~-~~~~~~~~---~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTET-VLRQALRE---RVKPVLFINKVDRLI 153 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHH-HHHHHHHc---CCCeEEEEECchhhc
Confidence 98877778889999999999998754333222 24433332 568899999999863
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-12 Score=92.24 Aligned_cols=120 Identities=17% Similarity=0.145 Sum_probs=73.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc---c-------C
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR---L-------R 71 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~---~-------~ 71 (195)
..+++|+|+|.+|+|||||+|.+++.... ....+++..........++. .+.+|||||-..... . .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~--~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGF--KLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 35789999999999999999999986532 22333333322333344554 456999999654310 0 1
Q ss_pred CCCCC--CccEEEEEEeCCCh-hcHHHHHHhhHHHHhhhCC-C--CcEEEEeeCCCcccchH
Q psy10443 72 PLSYP--QTDVFLICYSVVSP-SSFDNVTSKWYPELKHHCP-D--APIILVGTKIDLREDRE 127 (195)
Q Consensus 72 ~~~~~--~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~-~--~p~vvv~nK~D~~~~~~ 127 (195)
..++. ..+++++|..++.. .+..+. ..++.+..... + .++++|.||+|...+..
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~--~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDL--PLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHH--HHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 11222 57888888766543 222221 24444443221 1 57999999999976543
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.7e-12 Score=89.43 Aligned_cols=166 Identities=19% Similarity=0.153 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCc---ccceeeccceeEEeCCEEEEEEEEeCCCCccccc-----------cCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEY---VPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR-----------LRP 72 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-----------~~~ 72 (195)
++|+++|..|+||||++|.+++....... .+.+.........+++..+. ++||||-..... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~--VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVT--VIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEE--EEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEE--EEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999987543221 12222222344467887666 999999322110 011
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCC---CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP---DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA 149 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (195)
....+.+++++|+.+. +-+..+. ..+..+..... -..++||.|..|...+...+..... ......+.+.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~--~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~-----~~~~~l~~li 150 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDR--EVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKK-----ESNEALQELI 150 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHH--HHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHH-----HHHHHHHHHH
T ss_pred hccCCCeEEEEEEecC-cchHHHH--HHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhc-----cCchhHhHHh
Confidence 2345789999999987 2222222 12222222211 1368888999987765432211000 0123356677
Q ss_pred HHcCCceeEEeccC------CcccHHHHHHHHHHHHcCCC
Q psy10443 150 NKIRAVKYMECSAL------TQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 150 ~~~~~~~~~~~Sa~------~~~~v~~~~~~l~~~~~~~~ 183 (195)
+..+. .++..+.+ ....+.++++.+-+.+.+..
T Consensus 151 ~~c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 151 EKCGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp HHTTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhcCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 77774 67766666 34567888888777665543
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=94.91 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=69.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc-------CCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL-------RPLS 74 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~-------~~~~ 74 (195)
...++|+++|.+|+||||++|++++.... ....+++..........++ ..+.++||||....... ...+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 35789999999999999999999987532 2222222111122233455 45669999996543211 1111
Q ss_pred C--CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCC---CCcEEEEeeCCCcccc
Q psy10443 75 Y--PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP---DAPIILVGTKIDLRED 125 (195)
Q Consensus 75 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~vvv~nK~D~~~~ 125 (195)
+ ...|++++|..++.. .+.......+..+...+. -.+++++.|++|...+
T Consensus 114 l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred hhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 1 268999999665432 121111123333333221 2578999999997754
|
|
| >KOG3886|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.4e-13 Score=91.39 Aligned_cols=164 Identities=19% Similarity=0.268 Sum_probs=100.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCC---CcccceeeccceeEEeCCEEEEEEEEeCCCCccc-----cccCCCCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPG---EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY-----DRLRPLSYPQ 77 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-----~~~~~~~~~~ 77 (195)
.-||+++|.+|+||||+-..++.+.... ...+|.....+...... +..+++||.+||+.+ .......+++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG--nl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG--NLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh--hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 3489999999999999988877544221 11122222222211122 256779999999854 2345667889
Q ss_pred ccEEEEEEeCCChhcHHHHHH--hhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 78 TDVFLICYSVVSPSSFDNVTS--KWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~--~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
.+++++|+|++..+-..+... ..++.+.++.|...+++..+|.|+.+.+..+.... ...+.........+ +
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~------~r~~~l~~~s~~~~-~ 154 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQ------RRKEDLRRLSRPLE-C 154 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHH------HHHHHHHHhccccc-c
Confidence 999999999998765555442 35567777889999999999999988765333211 01112222222233 5
Q ss_pred eeEEeccCCcccHHHHHHHHHHHH
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
.++++|.-+ +.+-+++..+...+
T Consensus 155 ~~f~TsiwD-etl~KAWS~iv~~l 177 (295)
T KOG3886|consen 155 KCFPTSIWD-ETLYKAWSSIVYNL 177 (295)
T ss_pred cccccchhh-HHHHHHHHHHHHhh
Confidence 566766553 33444455544443
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-13 Score=111.05 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=79.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCCccccee---------------eccceeEEe--------------CCE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVF---------------DNYSAPFTV--------------DGI 52 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~---------------~~~~~~~~~--------------~~~ 52 (195)
.+-.||+|+|+.++|||||+.+|+... .......++. ......+.+ ++.
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 345699999999999999999987632 1111000000 000011112 123
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
.+.++++|+|||..|.......++.+|++|+|+|+.+.-..+... .|...... ++|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~~~---~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALGE---RIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHHHC---CCCEEEEEECCccc
Confidence 577889999999999888888889999999999998765444332 34444333 78999999999987
|
|
| >KOG0705|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.3e-13 Score=101.92 Aligned_cols=164 Identities=23% Similarity=0.361 Sum_probs=127.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
-.++|+.|+|..++|||+|+++++.+.+..+ ....+..+...+.+++....+.+.|.+|... .+|...+|++||
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~-e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQD-ESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccc-cCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 4678999999999999999999998877543 3344666677888889998989999988543 457778999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+.+.+..+++.+.. +...+..+ ...+|+++++++.-...... +.+.+.+.+.++.....+.+++++
T Consensus 102 vf~~~d~~s~q~v~~-l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~----------rv~~da~~r~l~~~~krcsy~et~ 170 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQA-LAHEMSSYRNISDLPLILVGTQDHISAKRP----------RVITDDRARQLSAQMKRCSYYETC 170 (749)
T ss_pred EEEeccccCHHHHHH-HHhhcccccccccchHHhhcCcchhhcccc----------cccchHHHHHHHHhcCccceeecc
Confidence 999999999998874 33333322 35688888887765543332 556677777777777778999999
Q ss_pred cCCcccHHHHHHHHHHHHcCCCc
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
+.+|.++..+|+.+...+...+.
T Consensus 171 atyGlnv~rvf~~~~~k~i~~~~ 193 (749)
T KOG0705|consen 171 ATYGLNVERVFQEVAQKIVQLRK 193 (749)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999988765543
|
|
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.9e-13 Score=104.28 Aligned_cols=174 Identities=17% Similarity=0.220 Sum_probs=106.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCccccee----eccceeEEe---------CCE---E-EEEEEEeCCCCccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVF----DNYSAPFTV---------DGI---P-VSLGLWDTAGQEDY 67 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~----~~~~~~~~~---------~~~---~-~~l~~~D~~G~~~~ 67 (195)
+..-+||+|+-.+|||-|+..+.+........+... .++.....+ ++. . =.+.++|||||+.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 345689999999999999999988544322222221 111110000 111 1 13669999999999
Q ss_pred cccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc-----hHhhhhhhhcCCCCccH
Q psy10443 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED-----RETLNLLSEQNLSPVKR 142 (195)
Q Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~-----~~~~~~~~~~~~~~~~~ 142 (195)
..++......||.+|+|+|+...-.-+.+. -+.+++.. +.|+||.+||+|.... +.......-.+...+..
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiE--Si~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIE--SINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhH--HHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 999999999999999999997653333333 33455544 7999999999997631 11111100010011100
Q ss_pred -------HHHHHHHHH-c------------CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 143 -------EQGQKLANK-I------------RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 143 -------~~~~~~~~~-~------------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.-+.+|+.. + ..+.++++||.+|+|+-+++.+|++.....
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 011122111 0 125689999999999999999998876543
|
|
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-11 Score=94.38 Aligned_cols=162 Identities=22% Similarity=0.307 Sum_probs=114.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
+-++..|+|++++|||.+++.+.++.+..++..+....+ ...+...+....+.+-|.+-. ....+...- ..||++.+
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~ 501 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACL 501 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence 458999999999999999999999888765555553333 233444577777778887754 222222222 78999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
+||.+++.++..... ........ ...|+++|++|+|+.+... ...... .+++++++..+.+..|.+
T Consensus 502 ~YDsS~p~sf~~~a~-v~~~~~~~-~~~Pc~~va~K~dlDe~~Q-----------~~~iqp-de~~~~~~i~~P~~~S~~ 567 (625)
T KOG1707|consen 502 VYDSSNPRSFEYLAE-VYNKYFDL-YKIPCLMVATKADLDEVPQ-----------RYSIQP-DEFCRQLGLPPPIHISSK 567 (625)
T ss_pred ecccCCchHHHHHHH-HHHHhhhc-cCCceEEEeeccccchhhh-----------ccCCCh-HHHHHhcCCCCCeeeccC
Confidence 999999999998764 22222222 5899999999999976532 111122 778999987667778887
Q ss_pred CcccHHHHHHHHHHHHcCCC
Q psy10443 164 TQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~~ 183 (195)
..-. .++|..|..+...+.
T Consensus 568 ~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 568 TLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CCCC-chHHHHHHHhhhCCC
Confidence 5223 799999998776655
|
|
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=90.47 Aligned_cols=172 Identities=16% Similarity=0.159 Sum_probs=107.0
Q ss_pred CCC-CcceEEEEEcCCCCchHHHHHHhhcCC----CCCCcccceee-----cccee------EEeCCEEEEEEEEeCCCC
Q psy10443 1 MSS-GRPIKCVVVGDGTVGKTCMLISYTTDS----FPGEYVPTVFD-----NYSAP------FTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 1 m~~-~~~~~i~v~G~~~~GKtsli~~l~~~~----~~~~~~~t~~~-----~~~~~------~~~~~~~~~l~~~D~~G~ 64 (195)
|.+ ...+|+.++|.-.+|||||.+++..-. |..+..+++.. .++.- .-..+.+..+.+.|+|||
T Consensus 1 m~~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH 80 (522)
T KOG0461|consen 1 MTSPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH 80 (522)
T ss_pred CCCCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc
Confidence 544 457999999999999999999997632 32222222211 11110 112456677889999999
Q ss_pred ccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
...-........-.|..++|+|+.....-+.++...+..+. -...++|+||+|...+..+... ..+.
T Consensus 81 asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr~sk---------i~k~ 147 (522)
T KOG0461|consen 81 ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQRASK---------IEKS 147 (522)
T ss_pred HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhhhhH---------HHHH
Confidence 76433333333345889999999876554444432233332 2356888899998765432111 1112
Q ss_pred HHHHHHHc------CCceeEEeccCCc----ccHHHHHHHHHHHHcCCCcc
Q psy10443 145 GQKLANKI------RAVKYMECSALTQ----RGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 145 ~~~~~~~~------~~~~~~~~Sa~~~----~~v~~~~~~l~~~~~~~~~~ 185 (195)
.....+.+ +..|++++||..| +++.++.+.|.+.+..+++.
T Consensus 148 ~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd 198 (522)
T KOG0461|consen 148 AKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD 198 (522)
T ss_pred HHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence 22222222 3378999999999 88889998888888877654
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-11 Score=92.18 Aligned_cols=84 Identities=19% Similarity=0.164 Sum_probs=56.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCE---------------EEEEEEEeCCCCcccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGI---------------PVSLGLWDTAGQEDYD 68 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~~~D~~G~~~~~ 68 (195)
..++|.++|.||||||||+|.|++... ..+++.|+.......+.+.+. ...+.++|+||-..-.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 457999999999999999999988643 355666664443444443322 2347799999943221
Q ss_pred c----c---CCCCCCCccEEEEEEeCC
Q psy10443 69 R----L---RPLSYPQTDVFLICYSVV 88 (195)
Q Consensus 69 ~----~---~~~~~~~~d~~i~v~d~~ 88 (195)
+ + ....++++|++++|+|+.
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 1 112356899999999984
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=91.79 Aligned_cols=107 Identities=13% Similarity=0.117 Sum_probs=66.2
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
+.+.|+||+|-..-... ....+|.++++.+....+.++.... ..+. ..-++|+||+|+........
T Consensus 149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~--- 214 (332)
T PRK09435 149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARR--- 214 (332)
T ss_pred CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHH---
Confidence 55779999996532221 4567999999977555555544321 1111 12379999999876432111
Q ss_pred hcCCCCccHHHHHHHHHH------cCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 134 EQNLSPVKREQGQKLANK------IRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
...+....... .+..+++.+||+++.|++++++.|.+.+..
T Consensus 215 -------~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 215 -------AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred -------HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 01112211111 122579999999999999999999997653
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-12 Score=107.44 Aligned_cols=115 Identities=16% Similarity=0.144 Sum_probs=77.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCCCccccee------ecc---------ceeEEeC--------CEEEEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVF------DNY---------SAPFTVD--------GIPVSLGLW 59 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~------~~~---------~~~~~~~--------~~~~~l~~~ 59 (195)
+..||+++|+.++|||||+++|+... .......++. ... ...+.++ +..+.+.|+
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 44599999999999999999998631 1111110100 000 0111222 225678899
Q ss_pred eCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 60 DTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 60 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
||||+.+|.......++.+|++|+|+|+.+.-..+... .|. .+... ++|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~-~~~-~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTET-VLR-QALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHH-HHH-HHHHc--CCCEEEEEEChhhh
Confidence 99999998877788889999999999998764433322 243 33333 68999999999997
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-12 Score=97.11 Aligned_cols=167 Identities=14% Similarity=0.211 Sum_probs=79.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC-CCcccce--eeccc-eeEEeCCEEEEEEEEeCCCCccccccC-----CCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTV--FDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLR-----PLSY 75 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~--~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~-----~~~~ 75 (195)
.+++|+|+|++|+|||||||.|.+-.-. +...+|. +.... ..+..... =.+.+||+||-.....-. ..-+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 4789999999999999999999873221 1112221 11111 11111111 134599999953322111 1234
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccH----HHHHHHHHH
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR----EQGQKLANK 151 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 151 (195)
...|.+|++.+ +.+....-.+...+... +.|+.+|-+|.|..=..+.. ..++.... +++++.+.+
T Consensus 113 ~~yD~fiii~s----~rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~-----~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 113 YRYDFFIIISS----ERFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERR-----RKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp GG-SEEEEEES----SS--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHC-----C-STT--HHTHHHHHHHHHHH
T ss_pred cccCEEEEEeC----CCCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhc-----cCCcccCHHHHHHHHHHHHHH
Confidence 56798888766 23433332355556655 78999999999962111100 00111221 223333332
Q ss_pred ------cCCceeEEeccCC--cccHHHHHHHHHHHHcCCC
Q psy10443 152 ------IRAVKYMECSALT--QRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 152 ------~~~~~~~~~Sa~~--~~~v~~~~~~l~~~~~~~~ 183 (195)
....++|.+|+.+ ..+...+.+.|.+.+...+
T Consensus 182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 1335789999887 3557777777777666554
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-11 Score=89.27 Aligned_cols=118 Identities=18% Similarity=0.252 Sum_probs=69.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCc---c-------cce-eeccceeEEeCCEEEEEEEEeCCCCcccc------
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEY---V-------PTV-FDNYSAPFTVDGIPVSLGLWDTAGQEDYD------ 68 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~---~-------~t~-~~~~~~~~~~~~~~~~l~~~D~~G~~~~~------ 68 (195)
.++|+|+|.+|+|||||++.|++....... . .+. .........-++..+.+.++||||-....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999986543221 0 111 11112344457888999999999922111
Q ss_pred -------------------ccCCCCC--CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchH
Q psy10443 69 -------------------RLRPLSY--PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127 (195)
Q Consensus 69 -------------------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 127 (195)
...+... ...|+++++++.+.. .+..+.-..+..+. ..+++|-|+.|+|.....+
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls---~~vNvIPvIaKaD~lt~~e 159 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS---KRVNVIPVIAKADTLTPEE 159 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT---TTSEEEEEESTGGGS-HHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc---ccccEEeEEecccccCHHH
Confidence 0111111 146899999998753 22222212334444 4689999999999987654
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.1e-11 Score=88.99 Aligned_cols=152 Identities=15% Similarity=0.182 Sum_probs=89.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC----CCC-------------CCccc----ceeeccc--eeEE---eCCEEEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD----SFP-------------GEYVP----TVFDNYS--APFT---VDGIPVSLGLW 59 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~----~~~-------------~~~~~----t~~~~~~--~~~~---~~~~~~~l~~~ 59 (195)
.+-|.|+|+.++|||||+++|.+. ... ....+ |+...+- .... .++....+.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 578999999999999999999986 221 12222 2222220 1112 24556778899
Q ss_pred eCCCCccc--------cc------c---------------CCCCCC-CccEEEEEE-eCC----ChhcHHHHHHhhHHHH
Q psy10443 60 DTAGQEDY--------DR------L---------------RPLSYP-QTDVFLICY-SVV----SPSSFDNVTSKWYPEL 104 (195)
Q Consensus 60 D~~G~~~~--------~~------~---------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~~~~~ 104 (195)
|++|-..- .. - +...+. .++..|+|. |.+ .++.+.+....+...+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 99982211 00 0 111233 578888887 654 2345666666788888
Q ss_pred hhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC--cccHHHHHHH
Q psy10443 105 KHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT--QRGLRQVFDE 174 (195)
Q Consensus 105 ~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~v~~~~~~ 174 (195)
+.. ++|+++++|++|-..+. ..+....+..+++ ++++.+|... .+.+..+++.
T Consensus 177 k~~--~kPfiivlN~~dp~~~e--------------t~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~ 231 (492)
T TIGR02836 177 KEL--NKPFIILLNSTHPYHPE--------------TEALRQELEEKYD-VPVLAMDVESMRESDILSVLEE 231 (492)
T ss_pred Hhc--CCCEEEEEECcCCCCch--------------hHHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHH
Confidence 876 89999999999944321 1222334455566 5666655442 3334444443
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-11 Score=84.60 Aligned_cols=152 Identities=14% Similarity=0.065 Sum_probs=82.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--------C----Ccccceeeccc-eeEEe-CC------------------
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--------G----EYVPTVFDNYS-APFTV-DG------------------ 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--------~----~~~~t~~~~~~-~~~~~-~~------------------ 51 (195)
.....|+++|..|+|||||++++...... . ..+........ ....+ ++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 34678999999999999999998764110 0 00000000000 00000 00
Q ss_pred -EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhh
Q psy10443 52 -IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLN 130 (195)
Q Consensus 52 -~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~ 130 (195)
....+.+.++.|.-... ..+....+..+.|+|+.+.+..... .... .+.|.++++||+|+.....
T Consensus 100 ~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~~---~~~~-----~~~a~iiv~NK~Dl~~~~~--- 165 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPLK---YPGM-----FKEADLIVINKADLAEAVG--- 165 (207)
T ss_pred cCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhhh---hHhH-----HhhCCEEEEEHHHccccch---
Confidence 12345567777721100 1111234555678888765432111 1111 1457799999999975321
Q ss_pred hhhhcCCCCccHHHHHHHHH-HcCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 131 LLSEQNLSPVKREQGQKLAN-KIRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
....+..+..+ ..+..+++++||+++.|++++++++.+.
T Consensus 166 ---------~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 166 ---------FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred ---------hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 11122222222 2344789999999999999999999874
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >KOG3887|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-11 Score=82.76 Aligned_cols=172 Identities=11% Similarity=0.154 Sum_probs=102.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc---CCCCCCCccEEEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL---RPLSYPQTDVFLIC 84 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~---~~~~~~~~d~~i~v 84 (195)
+|+++|...+||||+....+....+.+.........-..-.+.+.-+.+++||+|||-.+-.- ....++++.++|+|
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifv 108 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFV 108 (347)
T ss_pred eEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEEE
Confidence 499999999999999988877644332111111100011122335578899999998665322 12347789999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH---CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+- +.+.++...+...+.+. ++++.+=+.++|.|-..++...+...+..-+ ..++........-.+.++.+|
T Consensus 109 IDaQ--ddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr--~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 109 IDAQ--DDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQR--TNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred Eech--HHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHH--hhHHHHhhhhccceEEEEEee
Confidence 9965 33444433343344332 6889999999999988766543322222111 111222222222114566666
Q ss_pred cCCcccHHHHHHHHHHHHcCCCc
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
.. .+.+-++|..+++.+.+.-+
T Consensus 185 Iy-DHSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 185 IY-DHSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred ec-chHHHHHHHHHHHHHhhhch
Confidence 65 55689999999988876544
|
|
| >KOG0082|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.8e-11 Score=86.92 Aligned_cols=128 Identities=15% Similarity=0.219 Sum_probs=82.5
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcH----------HHHHHhhHHHHhhh--CCCCcEEEEeeCCC
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSF----------DNVTSKWYPELKHH--CPDAPIILVGTKID 121 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~----------~~~~~~~~~~~~~~--~~~~p~vvv~nK~D 121 (195)
..+.++|++||..-+.-|.+++.+++++|||+++++-+-. .+... +...+-.. ..+.++++++||.|
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~-LF~sI~n~~~F~~tsiiLFLNK~D 273 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLK-LFESICNNKWFANTSIILFLNKKD 273 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHH-HHHHHhcCcccccCcEEEEeecHH
Confidence 3466999999999899999999999999999999863221 12221 22222222 46899999999999
Q ss_pred cccchHhhhhh----hhcCCCCccHHHHHHHHH-----Hc----CCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 122 LREDRETLNLL----SEQNLSPVKREQGQKLAN-----KI----RAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 122 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+.+..-..... .+-... ...+++..+.. -+ ..+-+..+.|.+-.+|+.+|..+.+.+...+
T Consensus 274 LFeEKi~~~~~~~~Fpdy~G~-~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 274 LFEEKIKKVPLTDCFPDYKGV-NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred HHHHHhccCchhhhCcCCCCC-CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 97644211111 111111 22333332222 11 2245667899999999999999999887554
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.6e-11 Score=85.13 Aligned_cols=170 Identities=16% Similarity=0.170 Sum_probs=108.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC---CC---CCCcc-----------cceeeccceeEEeCCEEEEEEEEeCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD---SF---PGEYV-----------PTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~---~~---~~~~~-----------~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~ 66 (195)
+..+||..+|.-+.|||||...++.- .. ...|+ ..+.......+....+.|. ..|+|||..
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhya--hVDcPGHaD 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYA--HVDCPGHAD 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEE--eccCCChHH
Confidence 56899999999999999999877652 00 00111 1111122234445566666 999999999
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHH
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQG 145 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
|-........++|+.|+|++++|..--+... +. ...+.. ++| +++++||+|+.++.+..+ .-..+.
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrE-Hi-Llarqv--Gvp~ivvflnK~Dmvdd~elle---------lVemEv 154 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTRE-HI-LLARQV--GVPYIVVFLNKVDMVDDEELLE---------LVEMEV 154 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchh-hh-hhhhhc--CCcEEEEEEecccccCcHHHHH---------HHHHHH
Confidence 8766666667899999999999854333322 11 111221 554 566679999998665433 233456
Q ss_pred HHHHHHcCC----ceeEEeccCC--------cccHHHHHHHHHHHHcCCCccccC
Q psy10443 146 QKLANKIRA----VKYMECSALT--------QRGLRQVFDEAVRAVLRPEPVKRR 188 (195)
Q Consensus 146 ~~~~~~~~~----~~~~~~Sa~~--------~~~v~~~~~~l~~~~~~~~~~~~~ 188 (195)
+++...++. .|++.-||.. ...+.++++.+.+.+..+.+...+
T Consensus 155 reLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~dk 209 (394)
T COG0050 155 RELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDIDK 209 (394)
T ss_pred HHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcccc
Confidence 777777753 4566666553 123678888888888887776554
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-11 Score=83.10 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=42.8
Q ss_pred EEEEeCCCCcc----ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCC
Q psy10443 56 LGLWDTAGQED----YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120 (195)
Q Consensus 56 l~~~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~ 120 (195)
+.|+|+||-.. ....+..++..+|++|+|.+++...+..+.. .+.+..... ...+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTTT--CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcCC--CCeEEEEEcCC
Confidence 77999999532 2355667789999999999999866555443 355555544 33488888984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-10 Score=85.82 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=56.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEE---------------EEEEEEeCCCCccccc-
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIP---------------VSLGLWDTAGQEDYDR- 69 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~~~D~~G~~~~~~- 69 (195)
++|.++|.||||||||+++|++... ..+++.|+.......+.+.+.. ..+.+.|+||-..-.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 7899999999999999999998653 3456666644433343433321 2477999999532211
Q ss_pred ---c---CCCCCCCccEEEEEEeCC
Q psy10443 70 ---L---RPLSYPQTDVFLICYSVV 88 (195)
Q Consensus 70 ---~---~~~~~~~~d~~i~v~d~~ 88 (195)
+ ....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 122367899999999984
|
|
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=5e-11 Score=88.11 Aligned_cols=163 Identities=15% Similarity=0.204 Sum_probs=102.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc------------------------eeEEeC----------C
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS------------------------APFTVD----------G 51 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~------------------------~~~~~~----------~ 51 (195)
+++++|+|.-.+|||||+..|+++.............+. ..+.+. .
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 579999999999999999999887543211111111000 011111 1
Q ss_pred EEEEEEEEeCCCCccccccCCCCCC--CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhh
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYP--QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETL 129 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~ 129 (195)
..-.+.|+|++|+.+|...+-+.+. ..|...+|+++.....+..-+ .+..+... ++|++++++|+|+.......
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrE--HLgl~~AL--~iPfFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTRE--HLGLIAAL--NIPFFVLVTKMDLVDRQGLK 322 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHH--HHHHHHHh--CCCeEEEEEeeccccchhHH
Confidence 1234679999999999877666555 368888999987765554432 45555554 89999999999998874443
Q ss_pred hhhhhcC------------CCCccHHHHHHHHHHc---CCceeEEeccCCcccHHHHH
Q psy10443 130 NLLSEQN------------LSPVKREQGQKLANKI---RAVKYMECSALTQRGLRQVF 172 (195)
Q Consensus 130 ~~~~~~~------------~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~ 172 (195)
....+.. .+.-+.+++...+++. ..+|+|.+|+.+|+|++-+.
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 3322221 1222333443333332 33789999999999987553
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.5e-11 Score=88.54 Aligned_cols=157 Identities=17% Similarity=0.048 Sum_probs=101.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCC---C-CcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFP---G-EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~---~-~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.|.-.|.-..|||||+..+++..-. + ....++.+.-.. ..+-..+.+.|+|.||++++-...-..+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~--y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFY--YRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeE--eccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 4778899999999999999985321 1 111222221111 122223477899999999988777777788999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|+++++.-..+..+ .+..+.-. .....++|+||+|..++...+. ...+-..... +...+++.+|++
T Consensus 80 vV~~deGl~~qtgE--hL~iLdll-gi~~giivltk~D~~d~~r~e~---------~i~~Il~~l~--l~~~~i~~~s~~ 145 (447)
T COG3276 80 VVAADEGLMAQTGE--HLLILDLL-GIKNGIIVLTKADRVDEARIEQ---------KIKQILADLS--LANAKIFKTSAK 145 (447)
T ss_pred EEeCccCcchhhHH--HHHHHHhc-CCCceEEEEeccccccHHHHHH---------HHHHHHhhcc--cccccccccccc
Confidence 99997654443332 22222222 1234589999999987532211 1111111112 445678999999
Q ss_pred CcccHHHHHHHHHHHHc
Q psy10443 164 TQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~ 180 (195)
+|+|++++.+.|.+...
T Consensus 146 ~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 146 TGRGIEELKNELIDLLE 162 (447)
T ss_pred cCCCHHHHHHHHHHhhh
Confidence 99999999999999885
|
|
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=89.02 Aligned_cols=156 Identities=16% Similarity=0.144 Sum_probs=95.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC--------------------CCCCCcccce----ee---cc---ceeEEeCCEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD--------------------SFPGEYVPTV----FD---NY---SAPFTVDGIPV 54 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~--------------------~~~~~~~~t~----~~---~~---~~~~~~~~~~~ 54 (195)
..+..+|+|.-.+|||||+.+++.. ...-.|..+. +. .+ .....++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 4689999999999999999988763 0111111111 00 00 12233445556
Q ss_pred EEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHH-------HHHhhHHHHhhhCCCCcEEEEeeCCCcccchH
Q psy10443 55 SLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDN-------VTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127 (195)
Q Consensus 55 ~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 127 (195)
.+.+.|+|||..|..........+|++++|+|++-. .|+. .. .....++.. .-..++|++||+|+..=+.
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtr-Eha~llr~L-gi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTR-EHALLLRSL-GISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchH-HHHHHHHHc-CcceEEEEeecccccCccH
Confidence 778999999999988877888899999999999742 1211 11 111222222 2357889999999986432
Q ss_pred hhhhhhhcCCCCccHHHHHHHH-HHcCC----ceeEEeccCCcccHHHH
Q psy10443 128 TLNLLSEQNLSPVKREQGQKLA-NKIRA----VKYMECSALTQRGLRQV 171 (195)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~v~~~ 171 (195)
.... ........|. +..+. +.|+++|+.+|+|+-..
T Consensus 333 ~RF~--------eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 333 DRFE--------EIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHH--------HHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 1110 1122333444 22222 57999999999997544
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-11 Score=80.49 Aligned_cols=83 Identities=16% Similarity=0.049 Sum_probs=55.1
Q ss_pred CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH-cCCc
Q psy10443 77 QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK-IRAV 155 (195)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 155 (195)
..+.-|+|+|++..+.... +-...+.. .=++|+||.|+++.-. .+.+...+.+++ .+..
T Consensus 117 ~d~~~v~VidvteGe~~P~---K~gP~i~~-----aDllVInK~DLa~~v~------------~dlevm~~da~~~np~~ 176 (202)
T COG0378 117 GDHLRVVVIDVTEGEDIPR---KGGPGIFK-----ADLLVINKTDLAPYVG------------ADLEVMARDAKEVNPEA 176 (202)
T ss_pred hhceEEEEEECCCCCCCcc---cCCCceeE-----eeEEEEehHHhHHHhC------------ccHHHHHHHHHHhCCCC
Confidence 3448889999987654321 10111111 2278899999988633 334555555554 3557
Q ss_pred eeEEeccCCcccHHHHHHHHHHHH
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
+++.+|+++|+|+++++.++....
T Consensus 177 ~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 177 PIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CEEEEeCCCCcCHHHHHHHHHhhc
Confidence 899999999999999999987653
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.8e-11 Score=97.04 Aligned_cols=117 Identities=21% Similarity=0.157 Sum_probs=83.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCC--C-cccc-eee----------cc---ceeEEeCCEEEEEEEEeCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPG--E-YVPT-VFD----------NY---SAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~--~-~~~t-~~~----------~~---~~~~~~~~~~~~l~~~D~~G~ 64 (195)
++--||.++|+-++||||+..+++... ... + ...+ ..+ ++ ...+.+.+ .++++++|||||
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCc
Confidence 456799999999999999999986631 111 0 1000 000 00 11233343 477889999999
Q ss_pred ccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
-+|.......++-+|++++|+|+.+.-..+.-. .|.+..+. ++|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEt-v~rqa~~~---~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTET-VWRQADKY---GVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHH-HHHHHhhc---CCCeEEEEECcccccc
Confidence 999999999999999999999998764444333 37666665 7999999999998743
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-10 Score=85.99 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=77.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc--CCCC-------------CCcccce---eeccc---eeEEeCCEEEEEEEEeCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT--DSFP-------------GEYVPTV---FDNYS---APFTVDGIPVSLGLWDTAG 63 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~--~~~~-------------~~~~~t~---~~~~~---~~~~~~~~~~~l~~~D~~G 63 (195)
+.-..+|+-.|.+|||||-.+|+- +.+. ...++.. ...++ .....+-....+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 445678999999999999988653 2110 0011111 00111 1222233345677999999
Q ss_pred CccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
|+.|..-+...+..+|.+++|+|+...---+.. ++....+.. ++|++-.+||.|....
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfeVcrlR--~iPI~TFiNKlDR~~r 148 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFEVCRLR--DIPIFTFINKLDREGR 148 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHH--HHHHHHhhc--CCceEEEeeccccccC
Confidence 999998888888899999999998765333333 355555544 8999999999998643
|
|
| >KOG1486|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-09 Score=75.09 Aligned_cols=89 Identities=16% Similarity=0.193 Sum_probs=66.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc-------cCCCCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR-------LRPLSYP 76 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-------~~~~~~~ 76 (195)
-.-+|+++|.|.+|||||+..++.... ...|..|+-........++|..+. +.|+||--+-.+ ..-...+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQ--llDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQ--LLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEE--EecCcccccccccCCCCCceEEEEee
Confidence 356999999999999999999987543 456777887777788888887766 999998432211 1123456
Q ss_pred CccEEEEEEeCCChhcHHH
Q psy10443 77 QTDVFLICYSVVSPSSFDN 95 (195)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~ 95 (195)
.+|.+++|.|++..+.-..
T Consensus 139 taDlilMvLDatk~e~qr~ 157 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQRE 157 (364)
T ss_pred cccEEEEEecCCcchhHHH
Confidence 7999999999987654443
|
|
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.1e-11 Score=92.51 Aligned_cols=116 Identities=20% Similarity=0.249 Sum_probs=82.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcc---------cceeecc-------ceeE-----EeCCEEEEEEEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYV---------PTVFDNY-------SAPF-----TVDGIPVSLGLWDTA 62 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~---------~t~~~~~-------~~~~-----~~~~~~~~l~~~D~~ 62 (195)
..-.++.++|.-++|||+|+..|.....+.-.. .+..... ..+. ..+++.+.+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 345799999999999999999998764322111 1110000 0011 125777889999999
Q ss_pred CCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
||-.|.......++.+|++++|+|+.+.-.+..-. .+.+.+.. +.|+++++||.|..
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-~ikhaiq~---~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-IIKHAIQN---RLPIVVVINKVDRL 262 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-HHHHHHhc---cCcEEEEEehhHHH
Confidence 99999998899999999999999998776654332 12233333 79999999999975
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.1e-10 Score=82.40 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=62.8
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhh
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLL 132 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~ 132 (195)
.+.+.|+||+|..... ......+|.++++.... +..++.. ....+ .+.|.++++||+|+..........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~-~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQG-IKAGL----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHH-HHHHH----hhhccEEEEEcccccchhHHHHHH
Confidence 3567799999843211 22455678888775433 3333332 22222 256789999999987653210000
Q ss_pred hhcCCCCccHHHHHHHHHH--cCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 133 SEQNLSPVKREQGQKLANK--IRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
... ......+... .+..+++.+||+++.|++++++++.+...
T Consensus 195 ~~~------~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LML------ALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHH------HHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 000 0000111111 11246899999999999999999988643
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-10 Score=79.93 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=65.6
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ 146 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (195)
+..++..+++++|++++|+|++++... |...+.....+.|+++|+||+|+.... ...+...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~~~-------------~~~~~~~ 84 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLPKD-------------KNLVRIK 84 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCCCC-------------CCHHHHH
Confidence 466778889999999999999876421 222222223468999999999986432 1122233
Q ss_pred HHH-----HHcC--CceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 147 KLA-----NKIR--AVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 147 ~~~-----~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.+. ...+ ...++.+||+++.|++++++.|.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 85 NWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 332 2222 125899999999999999999998774
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.5e-10 Score=83.30 Aligned_cols=86 Identities=20% Similarity=0.202 Sum_probs=64.3
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
..++|.+++|+|+++++......+.|+..+.. .++|+++|+||+|+..... ...+...+.+..+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~-------------~~~~~~~~~~~~g- 141 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLE-------------EARELLALYRAIG- 141 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHH-------------HHHHHHHHHHHCC-
Confidence 58999999999999887766655567766654 3799999999999963321 1122334445555
Q ss_pred ceeEEeccCCcccHHHHHHHHH
Q psy10443 155 VKYMECSALTQRGLRQVFDEAV 176 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~ 176 (195)
.+++.+||+++.|+++++..+.
T Consensus 142 ~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 142 YDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred CeEEEEeCCCCccHHHHHhhcc
Confidence 6899999999999999998764
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.5e-10 Score=81.81 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=39.2
Q ss_pred CcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH-HHHHHcCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 111 APIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ-KLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 111 ~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
.+-++|+||+|+..... ...+... .+....+..+++.+|+++|+|+++++++|.+.
T Consensus 231 ~ADIVVLNKiDLl~~~~------------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLN------------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccH------------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999975311 1122222 23333455789999999999999999999763
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.3e-10 Score=79.11 Aligned_cols=69 Identities=19% Similarity=0.138 Sum_probs=43.8
Q ss_pred EEEEEeCCCCccc-------------cccCCCCCC-CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCC
Q psy10443 55 SLGLWDTAGQEDY-------------DRLRPLSYP-QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120 (195)
Q Consensus 55 ~l~~~D~~G~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~ 120 (195)
.+.++|+||-... ..+...|++ ..+.+++|+|++..-.-++.. .+...+... +.|+++|+||.
T Consensus 126 ~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l-~ia~~ld~~--~~rti~ViTK~ 202 (240)
T smart00053 126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL-KLAKEVDPQ--GERTIGVITKL 202 (240)
T ss_pred ceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH-HHHHHHHHc--CCcEEEEEECC
Confidence 4779999996421 123444666 456899999986533322322 133444433 78999999999
Q ss_pred Ccccch
Q psy10443 121 DLREDR 126 (195)
Q Consensus 121 D~~~~~ 126 (195)
|.....
T Consensus 203 D~~~~~ 208 (240)
T smart00053 203 DLMDEG 208 (240)
T ss_pred CCCCcc
Confidence 987653
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-10 Score=76.14 Aligned_cols=93 Identities=15% Similarity=0.078 Sum_probs=62.6
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA 149 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (195)
+..+.++++|++++|+|++++....+. .+...+.. .+.|+++|+||+|+..... . .....+.
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~--~~~p~iiv~NK~Dl~~~~~------------~--~~~~~~~ 66 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLE--LGKKLLIVLNKADLVPKEV------------L--EKWKSIK 66 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHh--CCCcEEEEEEhHHhCCHHH------------H--HHHHHHH
Confidence 445667789999999999876533221 12232322 2689999999999864321 0 1111222
Q ss_pred HHcCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 150 NKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 150 ~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
...+ .+++.+||+++.|++++++.+.+.+..
T Consensus 67 ~~~~-~~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 67 ESEG-IPVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred HhCC-CcEEEEEccccccHHHHHHHHHHHHhh
Confidence 3333 578999999999999999999887753
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=82.39 Aligned_cols=96 Identities=18% Similarity=0.172 Sum_probs=66.6
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHH
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQG 145 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
+-..+.+..+.++|.+++|+|+.++.......+.|+..... .++|+++|+||+|+..... .+..
T Consensus 78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~--------------~~~~ 141 (352)
T PRK12289 78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTE--------------QQQW 141 (352)
T ss_pred cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHH--------------HHHH
Confidence 33455566788999999999999876333222346655533 4799999999999965321 1122
Q ss_pred HHHHHHcCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 146 QKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 146 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
.......+ .+++.+||+++.|++++++.+...
T Consensus 142 ~~~~~~~g-~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 142 QDRLQQWG-YQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred HHHHHhcC-CeEEEEEcCCCCCHHHHhhhhccc
Confidence 22233445 679999999999999999988653
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.6e-10 Score=78.37 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=58.8
Q ss_pred EEEEeCCC--CccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 56 LGLWDTAG--QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 56 l~~~D~~G--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
+.++.|.| |.+.. ...-+|.+++|....-.+..+..+.-.++... ++|+||+|.......-.
T Consensus 124 ~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD--------i~vVNKaD~~gA~~~~~--- 187 (266)
T PF03308_consen 124 VIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD--------IFVVNKADRPGADRTVR--- 187 (266)
T ss_dssp EEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S--------EEEEE--SHHHHHHHHH---
T ss_pred EEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc--------EEEEeCCChHHHHHHHH---
Confidence 44666644 44322 34468999999998887777766532333322 88899999655432100
Q ss_pred hcCCCCccHHHHHHHHH---HcCCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 134 EQNLSPVKREQGQKLAN---KIRAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
..+....+.. ..|..|++.+||.++.|++++++.|.+..
T Consensus 188 -------~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 188 -------DLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp -------HHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -------HHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 0011111111 12346899999999999999999988743
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.7e-09 Score=76.99 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEe----------------CCEEEEEEEEeCCCCc---
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTV----------------DGIPVSLGLWDTAGQE--- 65 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~----------------~~~~~~l~~~D~~G~~--- 65 (195)
.+++.++|.||||||||.|.++.... ..+|+.++.+.=.....+ .-....+.|+|.+|--
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 36899999999999999999999764 367777663321211111 1233568899999832
Q ss_pred -cccccCCC---CCCCccEEEEEEeCC
Q psy10443 66 -DYDRLRPL---SYPQTDVFLICYSVV 88 (195)
Q Consensus 66 -~~~~~~~~---~~~~~d~~i~v~d~~ 88 (195)
+-..+-.. -+|.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 22233333 367899999999986
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-09 Score=85.37 Aligned_cols=117 Identities=14% Similarity=0.121 Sum_probs=69.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCC-CCCC-cccceeeccceeEEeCCEEEEEEEEeCCCCccccc-------c---CCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDS-FPGE-YVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR-------L---RPL 73 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~-~~~~-~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-------~---~~~ 73 (195)
.++|+++|.+|+||||++|.+++.. +... ..+.+..........++.. +.++||||-..... . ...
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~--L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVK--IRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCce--EEEEECCCCCccccchHHHHHHHHHHHH
Confidence 4689999999999999999999874 3221 1122222222233445544 55999999554311 0 111
Q ss_pred CCC--CccEEEEEEeCCChhc-HHHHHHhhHHHHhhhCC---CCcEEEEeeCCCcccch
Q psy10443 74 SYP--QTDVFLICYSVVSPSS-FDNVTSKWYPELKHHCP---DAPIILVGTKIDLREDR 126 (195)
Q Consensus 74 ~~~--~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~---~~p~vvv~nK~D~~~~~ 126 (195)
++. .+|++|+|..++.... .++. .++..+...+. =..+||+.|+.|...++
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~--~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppd 252 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDL--PLLRTITDVLGPSIWFNAIVTLTHAASAPPD 252 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHH--HHHHHHHHHhCHHhHcCEEEEEeCCccCCCC
Confidence 222 5799999988763322 1222 23444433221 14789999999998753
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >KOG2486|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-10 Score=81.13 Aligned_cols=163 Identities=15% Similarity=0.083 Sum_probs=91.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCccc-ceeeccceeEEeCCEEEEEEEEeCCC----------CccccccCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVP-TVFDNYSAPFTVDGIPVSLGLWDTAG----------QEDYDRLRP 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~~~D~~G----------~~~~~~~~~ 72 (195)
.++.+++++|.+|+|||||++.++.......... +.+........--+. .+.+.|.|| ...+..+..
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~--~~~~vDlPG~~~a~y~~~~~~d~~~~t~ 211 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK--SWYEVDLPGYGRAGYGFELPADWDKFTK 211 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc--eEEEEecCCcccccCCccCcchHhHhHH
Confidence 3568999999999999999999998643222111 222222211111122 445899999 122334444
Q ss_pred CCCCCc---cEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccH--HHHHH
Q psy10443 73 LSYPQT---DVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR--EQGQK 147 (195)
Q Consensus 73 ~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~ 147 (195)
.|+.+- --+.+++|++-+-.-.+. ..++++.++ ++|+.+|.||||.........+ +.... .....
T Consensus 212 ~Y~leR~nLv~~FLLvd~sv~i~~~D~--~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~k------Kp~~~i~~~f~~ 281 (320)
T KOG2486|consen 212 SYLLERENLVRVFLLVDASVPIQPTDN--PEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGK------KPGLNIKINFQG 281 (320)
T ss_pred HHHHhhhhhheeeeeeeccCCCCCCCh--HHHHHHhhc--CCCeEEeeehhhhhhhcccccc------Cccccceeehhh
Confidence 444432 234556676643222222 244555555 8999999999998654321110 00000 00111
Q ss_pred HHHHc--CCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 148 LANKI--RAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 148 ~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
+.+.. ...|++.+|+.++.|.+.++-.+.+.
T Consensus 282 l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 282 LIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ccccceeccCCceeeecccccCceeeeeehhhh
Confidence 11111 11456789999999999998877664
|
|
| >KOG2655|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-08 Score=75.38 Aligned_cols=119 Identities=21% Similarity=0.258 Sum_probs=75.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCC--------ccc-ce-eeccceeEEeCCEEEEEEEEeCCCCcccc------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGE--------YVP-TV-FDNYSAPFTVDGIPVSLGLWDTAGQEDYD------ 68 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~--------~~~-t~-~~~~~~~~~~~~~~~~l~~~D~~G~~~~~------ 68 (195)
-.|.++++|++|.|||||+|.|+...+..+ ..+ |. .......+.-+|..++|++.||||-....
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 359999999999999999999988754332 111 11 11112334447888999999999932221
Q ss_pred -------------------ccCCCCCC--CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchH
Q psy10443 69 -------------------RLRPLSYP--QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127 (195)
Q Consensus 69 -------------------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 127 (195)
...+..+. ..+++++.+..+.. ++..+.- ..++.....+.++-|+-|+|.....+
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di---~~Mk~l~~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDI---EFMKKLSKKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhH---HHHHHHhccccccceeeccccCCHHH
Confidence 11112222 46899999987643 2333332 23333344788899999999887765
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.3e-09 Score=77.91 Aligned_cols=121 Identities=22% Similarity=0.272 Sum_probs=75.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCc----------ccceee-ccceeEEeCCEEEEEEEEeCCCCcccc----
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEY----------VPTVFD-NYSAPFTVDGIPVSLGLWDTAGQEDYD---- 68 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~----------~~t~~~-~~~~~~~~~~~~~~l~~~D~~G~~~~~---- 68 (195)
..+++|+++|++|.|||||+|.|++....... .++..- .....+.-++..+.+.++||||-..+-
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 45799999999999999999999987432221 122211 122344457888999999999932221
Q ss_pred ---------------------ccCCC-CCC--CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCccc
Q psy10443 69 ---------------------RLRPL-SYP--QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124 (195)
Q Consensus 69 ---------------------~~~~~-~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 124 (195)
...+. .+. ..|++++.+..+. .++..+.-..+..+ ...+.++-|+.|+|...
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~l---s~~vNlIPVI~KaD~lT 176 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRL---SKRVNLIPVIAKADTLT 176 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHH---hcccCeeeeeeccccCC
Confidence 00111 111 3688999988764 23333332233333 34688899999999987
Q ss_pred chHh
Q psy10443 125 DRET 128 (195)
Q Consensus 125 ~~~~ 128 (195)
..+.
T Consensus 177 ~~El 180 (373)
T COG5019 177 DDEL 180 (373)
T ss_pred HHHH
Confidence 6653
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.3e-09 Score=76.81 Aligned_cols=87 Identities=21% Similarity=0.177 Sum_probs=64.5
Q ss_pred CCCCCccEEEEEEeCCChh-cHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 73 LSYPQTDVFLICYSVVSPS-SFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
..+.++|.+++|+|+.++. ++..+. .|+..+... ++|+++|+||+|+..... ......+...
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ld-r~L~~~~~~--~ip~iIVlNK~DL~~~~~--------------~~~~~~~~~~ 136 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLD-RYLVAAEAA--GIEPVIVLTKADLLDDEE--------------EELELVEALA 136 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHH-HHHHHHHHc--CCCEEEEEEHHHCCChHH--------------HHHHHHHHHh
Confidence 3478999999999999987 666665 477766554 789999999999965421 1112223334
Q ss_pred cCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
.+ .+++.+||+++.|+++++..|..
T Consensus 137 ~g-~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 137 LG-YPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred CC-CeEEEEECCCCccHHHHHhhhcc
Confidence 45 68999999999999999887764
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=78.01 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=62.7
Q ss_pred EEEEeCCC--CccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 56 LGLWDTAG--QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 56 l~~~D~~G--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
+.++.|.| |.+ -....-+|.+++|.-..-.+..+..+.-.++.-. ++|+||.|............
T Consensus 146 vIIVETVGvGQse-----v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--------i~vINKaD~~~A~~a~r~l~ 212 (323)
T COG1703 146 VIIVETVGVGQSE-----VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--------IIVINKADRKGAEKAARELR 212 (323)
T ss_pred EEEEEecCCCcch-----hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh--------eeeEeccChhhHHHHHHHHH
Confidence 44666654 332 1234457888888777777777766532322222 88899999654321111000
Q ss_pred hcCCCCccHHHH--HHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 134 EQNLSPVKREQG--QKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 134 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
. .... ..+....|..+++.+||.+|+|++++++.+.+...
T Consensus 213 ~-------al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 213 S-------ALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred H-------HHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 0 0000 11233345578999999999999999999988653
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-09 Score=81.49 Aligned_cols=96 Identities=24% Similarity=0.341 Sum_probs=69.7
Q ss_pred CccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHH
Q psy10443 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKRE 143 (195)
Q Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 143 (195)
++.|..+...+.+.++++++|+|+.+... .|...+.....+.|+++|+||+|+.... ...+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k~-------------~~~~ 110 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPKS-------------VNLS 110 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCCC-------------CCHH
Confidence 45777788888899999999999977542 2444554444478999999999997532 2223
Q ss_pred HHH----HHHHHcCC--ceeEEeccCCcccHHHHHHHHHHH
Q psy10443 144 QGQ----KLANKIRA--VKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 144 ~~~----~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
+.. ++++..+. ..++.+||++|.|+++++..+.+.
T Consensus 111 ~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 111 KIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 333 34555552 148999999999999999998764
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-09 Score=79.14 Aligned_cols=80 Identities=18% Similarity=0.162 Sum_probs=53.4
Q ss_pred EEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCE---------------EEEEEEEeCCCCcccc----
Q psy10443 9 CVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGI---------------PVSLGLWDTAGQEDYD---- 68 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~~~D~~G~~~~~---- 68 (195)
|+++|.||||||||+|+|++... ..+++.++.+.....+.+.+. ...+.++|+||-..-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999999754 345566664443444444332 1247899999943211
Q ss_pred ccC---CCCCCCccEEEEEEeCC
Q psy10443 69 RLR---PLSYPQTDVFLICYSVV 88 (195)
Q Consensus 69 ~~~---~~~~~~~d~~i~v~d~~ 88 (195)
.+. ...++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 111 12356899999999974
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >KOG1547|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=71.60 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=90.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCC---------Ccccceeec-cceeEEeCCEEEEEEEEeCCCCccc---cccC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPG---------EYVPTVFDN-YSAPFTVDGIPVSLGLWDTAGQEDY---DRLR 71 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~---------~~~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~~~~---~~~~ 71 (195)
=+|+|.|+|.+|.|||||+|.++...... .+..|++-. .+..+.-++...++.++||||-.+. ...|
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 46899999999999999999988753221 222233222 2345556788899999999983221 1111
Q ss_pred -----------------------CCCCC--CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 72 -----------------------PLSYP--QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 72 -----------------------~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
...+. ..+++++.+..+-. ++..+.-.++..+.+ -+.++-|+-|+|...-.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~---vvNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE---VVNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh---hheeeeeEeecccccHH
Confidence 11222 35788888877642 333332223444433 36677788899976544
Q ss_pred HhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
+.. .-.+.+++-...++ +.+++--+.+.+.-+..++.-++
T Consensus 201 Er~----------~FkqrI~~el~~~~-i~vYPq~~fded~ed~~lN~kvR 240 (336)
T KOG1547|consen 201 ERS----------AFKQRIRKELEKHG-IDVYPQDSFDEDLEDKTLNDKVR 240 (336)
T ss_pred HHH----------HHHHHHHHHHHhcC-cccccccccccchhHHHHHHHHH
Confidence 321 12233343444455 56666655555544455555444
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=76.13 Aligned_cols=167 Identities=21% Similarity=0.135 Sum_probs=98.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccce----------eeccce-----eEEeC-CEE--------------
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV----------FDNYSA-----PFTVD-GIP-------------- 53 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~----------~~~~~~-----~~~~~-~~~-------------- 53 (195)
..++.+.+.|.-+.|||||+..|..+........|. ....+. .+-++ ++.
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 457899999999999999999888764432211111 000000 11111 111
Q ss_pred ------EEEEEEeCCCCccccccC--CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 54 ------VSLGLWDTAGQEDYDRLR--PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 54 ------~~l~~~D~~G~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
-.+.|.|+.||+.|...+ ...-.+.|-.++++.+++.-+...-+ .+..+... .+|+++++||+|+..+
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkE--HLgi~~a~--~lPviVvvTK~D~~~d 270 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKE--HLGIALAM--ELPVIVVVTKIDMVPD 270 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhH--hhhhhhhh--cCCEEEEEEecccCcH
Confidence 225699999999885332 33344689999999998765543322 33333333 7999999999999876
Q ss_pred hHhhhhhhhcC---------CCCc-cHHHH--HHHHHH--cCCceeEEeccCCcccHHHHHHH
Q psy10443 126 RETLNLLSEQN---------LSPV-KREQG--QKLANK--IRAVKYMECSALTQRGLRQVFDE 174 (195)
Q Consensus 126 ~~~~~~~~~~~---------~~~~-~~~~~--~~~~~~--~~~~~~~~~Sa~~~~~v~~~~~~ 174 (195)
.......++.. +..+ +..+. ...+-+ -+.+|+|.+|+.+|+|++-+.+-
T Consensus 271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~ 333 (527)
T COG5258 271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF 333 (527)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence 65444322211 1111 11111 111222 22479999999999998655443
|
|
| >KOG0410|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-09 Score=76.68 Aligned_cols=148 Identities=24% Similarity=0.300 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEe-CCEEEEEEEEeCCCCc---------cccccCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTV-DGIPVSLGLWDTAGQE---------DYDRLRPLSY 75 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~-~~~~~~l~~~D~~G~~---------~~~~~~~~~~ 75 (195)
--|.|+|-.|+|||||++.|+.... +.+.-..+-+........ .|..+- +.||-|-- .|.+. ..-.
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vl--ltDTvGFisdLP~~LvaAF~AT-LeeV 255 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVL--LTDTVGFISDLPIQLVAAFQAT-LEEV 255 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEE--EeechhhhhhCcHHHHHHHHHH-HHHH
Confidence 4589999999999999999996543 222222222222222222 344444 88998821 11111 1224
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhh-CCCCc----EEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAP----IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p----~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
..+|.++-|.|+++|..-+.... -+..++.. .++.| ++=|=||.|..+... ..+
T Consensus 256 aeadlllHvvDiShP~ae~q~e~-Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-------------e~E------- 314 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRET-VLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-------------EEE------- 314 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHH-HHHHHHhcCCCcHHHHhHHHhhccccccccccC-------------ccc-------
Confidence 47899999999999976665543 44555543 12222 345568888755421 111
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
.+ ..+.+|+++|+|++++.+.+-..+..
T Consensus 315 ~n---~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 315 KN---LDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cC---CccccccccCccHHHHHHHHHHHhhh
Confidence 11 14678999999999999988776543
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=69.01 Aligned_cols=91 Identities=15% Similarity=0.065 Sum_probs=59.5
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI 152 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
..+.++|.+++|+|++++....+ ..+...+.....+.|+++|+||+|+..... .......+...+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-------------~~~~~~~~~~~~ 68 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-------------TARWVKILSKEY 68 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH-------------HHHHHHHHhcCC
Confidence 35678999999999998743221 123344443334689999999999965421 011222222222
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
. ...+.+||+.+.|++++++.+.+.+
T Consensus 69 ~-~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 69 P-TIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred c-EEEEEeeccccccHHHHHHHHHHHH
Confidence 2 2357899999999999999987764
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG0463|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=5e-09 Score=77.86 Aligned_cols=161 Identities=14% Similarity=0.127 Sum_probs=91.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCC------------------cccceeeccce--------------------eE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGE------------------YVPTVFDNYSA--------------------PF 47 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~------------------~~~t~~~~~~~--------------------~~ 47 (195)
+++|+|+|+-.+|||||+..|+++..... .....++.+.. .-
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 57999999999999999988887632210 00011111100 00
Q ss_pred EeCCEEEEEEEEeCCCCccccccCCCCCC--CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 48 TVDGIPVSLGLWDTAGQEDYDRLRPLSYP--QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 48 ~~~~~~~~l~~~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
...+..-.+.|+|++|+++|...+-..+. -.|...+++.++...-- ...+ .+..... -.+|+++|++|+|....
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiG-mTKE-HLgLALa--L~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIG-MTKE-HLGLALA--LHVPVFVVVTKIDMCPA 288 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccccee-ccHH-hhhhhhh--hcCcEEEEEEeeccCcH
Confidence 00112234679999999999765544433 46788888887643211 1111 2222222 27999999999999887
Q ss_pred hHhhhhhhhcCC-------CC-----ccHHH----HHHHHHHcCCceeEEeccCCcccHHHH
Q psy10443 126 RETLNLLSEQNL-------SP-----VKREQ----GQKLANKIRAVKYMECSALTQRGLRQV 171 (195)
Q Consensus 126 ~~~~~~~~~~~~-------~~-----~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 171 (195)
+..++..+.+.. +. .+.++ +..|..+. .+|+|.+|..+|.|+.-+
T Consensus 289 NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser-~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 289 NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSER-VCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCcccc-ccceEEeccccCCChHHH
Confidence 765554332110 00 00011 11222222 278999999999998654
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.4e-09 Score=69.20 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=34.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCC--CcccceeeccceeEEeCCEEEEEEEEeCCCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPG--EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~ 64 (195)
+++++|.+|+|||||+|++.+..... ....++ .....+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKT--KHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcc--cceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999875431 111111 1122333433 3569999994
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-08 Score=75.49 Aligned_cols=88 Identities=17% Similarity=0.211 Sum_probs=63.4
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
.|+|.+++|++++...++..+. .|+..... .++|.++|+||+|+...... ....+........+ .
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ld-r~L~~a~~--~~i~~VIVlNK~DL~~~~~~-----------~~~~~~~~~y~~~g-~ 183 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIID-RYLVACET--LGIEPLIVLNKIDLLDDEGR-----------AFVNEQLDIYRNIG-Y 183 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHH-HHHHHHHh--cCCCEEEEEECccCCCcHHH-----------HHHHHHHHHHHhCC-C
Confidence 5689999999998777777766 47665543 47899999999999764210 00112222233455 6
Q ss_pred eeEEeccCCcccHHHHHHHHHHH
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
+++.+||+++.|++++++.|...
T Consensus 184 ~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 184 RVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred eEEEEeCCCCcCHHHHHHHHhhC
Confidence 89999999999999999998764
|
|
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=5e-08 Score=71.62 Aligned_cols=171 Identities=16% Similarity=0.152 Sum_probs=104.8
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcC----CCC--CCcc-----------cceeeccceeEEeCCEEEEEEEEeCCCCc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTD----SFP--GEYV-----------PTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~----~~~--~~~~-----------~t~~~~~~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
+++.+||.-+|.-..|||||-..++.- ... ..|+ ..+.......+....+.|. =.|+|||.
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYa--H~DCPGHA 128 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYA--HTDCPGHA 128 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccc--cCCCCchH
Confidence 467899999999999999998877652 110 0111 0111111122233344444 77999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHH
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQG 145 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
+|-...-....+.|+.|+|+.++|..=-+.-+ ++ ++.+...=..+++.+||.|+..+.+-.+ .-.-++
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~MPQTrE-Hl--LLArQVGV~~ivvfiNKvD~V~d~e~le---------LVEmE~ 196 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPMPQTRE-HL--LLARQVGVKHIVVFINKVDLVDDPEMLE---------LVEMEI 196 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCCcchHH-HH--HHHHHcCCceEEEEEecccccCCHHHHH---------HHHHHH
Confidence 98776666777899999999999965444332 12 2222222246788889999996654333 223456
Q ss_pred HHHHHHcCC----ceeEEecc---CCcc-------cHHHHHHHHHHHHcCCCcccc
Q psy10443 146 QKLANKIRA----VKYMECSA---LTQR-------GLRQVFDEAVRAVLRPEPVKR 187 (195)
Q Consensus 146 ~~~~~~~~~----~~~~~~Sa---~~~~-------~v~~~~~~l~~~~~~~~~~~~ 187 (195)
+++...++. .|++.=|| ..|. .+.++++.+-+.+..+.+...
T Consensus 197 RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~ 252 (449)
T KOG0460|consen 197 RELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLD 252 (449)
T ss_pred HHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccC
Confidence 667776653 56766554 4442 366777777777776665443
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.1e-08 Score=66.77 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=34.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG 63 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G 63 (195)
+.++|+++|.+|+|||||+|+|.+... .....+++.... .+.. +.. +.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~--~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQ--YITL-MKR--IYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEE--EEEc-CCC--EEEEECcC
Confidence 467899999999999999999998543 122233332211 1112 222 45999998
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.5e-08 Score=67.32 Aligned_cols=54 Identities=24% Similarity=0.242 Sum_probs=35.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG 63 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G 63 (195)
..++++++|.||+|||||+|++.+.... ...++++.... .+.++ . .+.++|+||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~--~~~~~-~--~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQ--EVHLD-K--KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceE--EEEeC-C--CEEEEECcC
Confidence 3589999999999999999999986431 22233332211 22222 2 356999998
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.9e-08 Score=64.39 Aligned_cols=84 Identities=18% Similarity=0.110 Sum_probs=54.6
Q ss_pred cEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
|.+++|+|+.++.+.... ++........+.|+++|+||+|+..... . .+....+.... ...++
T Consensus 1 Dvvl~VvD~~~p~~~~~~---~i~~~~~~~~~~p~IiVlNK~Dl~~~~~------------~-~~~~~~~~~~~-~~~ii 63 (155)
T cd01849 1 DVILEVLDARDPLGTRSP---DIERVLIKEKGKKLILVLNKADLVPKEV------------L-RKWLAYLRHSY-PTIPF 63 (155)
T ss_pred CEEEEEEeccCCccccCH---HHHHHHHhcCCCCEEEEEechhcCCHHH------------H-HHHHHHHHhhC-CceEE
Confidence 689999999887654432 2221111224789999999999865321 0 01111222222 35689
Q ss_pred EeccCCcccHHHHHHHHHHHH
Q psy10443 159 ECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
.+||+++.|++++++.+.+..
T Consensus 64 ~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 64 KISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred EEeccCCcChhhHHHHHHHHh
Confidence 999999999999999887653
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG0448|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.2e-07 Score=73.84 Aligned_cols=117 Identities=15% Similarity=0.270 Sum_probs=71.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccce--------eEEeC-------------------------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSA--------PFTVD------------------------- 50 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~--------~~~~~------------------------- 50 (195)
...||++.|..++||||++|.++...+ +....+++...... ...++
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 467999999999999999999988643 22222222111000 00000
Q ss_pred -CEEE--------------EEEEEeCCCCc---cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc
Q psy10443 51 -GIPV--------------SLGLWDTAGQE---DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP 112 (195)
Q Consensus 51 -~~~~--------------~l~~~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 112 (195)
+.-+ .+.+.|.||-+ ...+-...+..++|++|+|.++.+.-...+. .++...... +..
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek--~Ff~~vs~~--Kpn 263 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK--QFFHKVSEE--KPN 263 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH--HHHHHhhcc--CCc
Confidence 0000 14477888843 3334445567789999999999876554443 355555444 566
Q ss_pred EEEEeeCCCcccc
Q psy10443 113 IILVGTKIDLRED 125 (195)
Q Consensus 113 ~vvv~nK~D~~~~ 125 (195)
++|+.||.|....
T Consensus 264 iFIlnnkwDasas 276 (749)
T KOG0448|consen 264 IFILNNKWDASAS 276 (749)
T ss_pred EEEEechhhhhcc
Confidence 7778899998665
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.1e-08 Score=64.50 Aligned_cols=87 Identities=20% Similarity=0.189 Sum_probs=55.9
Q ss_pred CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 74 SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
.+..+|++++|+|+.++.+..+. .+...+.....+.|+++++||+|+..... ..+..++....+
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~~--~l~~~l~~~~~~k~~iivlNK~DL~~~~~--------------~~~~~~~~~~~~ 71 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRPP--DLERYVKEVDPRKKNILLLNKADLLTEEQ--------------RKAWAEYFKKEG 71 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCCH--HHHHHHHhccCCCcEEEEEechhcCCHHH--------------HHHHHHHHHhcC
Confidence 46789999999999987654421 13333333335789999999999865321 122333444444
Q ss_pred CceeEEeccCCcc-----------cHHHHHHHHHH
Q psy10443 154 AVKYMECSALTQR-----------GLRQVFDEAVR 177 (195)
Q Consensus 154 ~~~~~~~Sa~~~~-----------~v~~~~~~l~~ 177 (195)
.+++.+||+++. |-..+++.+..
T Consensus 72 -~~ii~iSa~~~~~~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 72 -IVVVFFSALKENATIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred -CeEEEEEecCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 578899998654 45566666543
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.9e-08 Score=66.34 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=36.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCC--CcccceeeccceeEEeCCEEEEEEEEeCCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPG--EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~ 64 (195)
..++++++|.+|+|||||++++.+..+.. ....++.. ...+.++ ..+.+|||||-
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~--~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG--IQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee--eEEEEec---CCEEEEECCCC
Confidence 45799999999999999999999865421 11122221 1122332 24569999993
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG0466|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.7e-09 Score=74.55 Aligned_cols=163 Identities=18% Similarity=0.186 Sum_probs=101.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC---CC----------------------CCcccc----------eeeccceeEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS---FP----------------------GEYVPT----------VFDNYSAPFT 48 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~---~~----------------------~~~~~t----------~~~~~~~~~~ 48 (195)
...++|.-+|.-..||||++..+.+-. |- .+.-|. ..+.. .+.
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~--~c~ 113 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRP--PCD 113 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCC--Ccc
Confidence 456899999999999999998887631 00 000000 00100 111
Q ss_pred eCCE--E----EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCCh----hcHHHHHHhhHHHHhhhCCCCcEEEEee
Q psy10443 49 VDGI--P----VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSP----SSFDNVTSKWYPELKHHCPDAPIILVGT 118 (195)
Q Consensus 49 ~~~~--~----~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~vvv~n 118 (195)
..+. + -.+.|.|.|||+...+.......-.|++++++..+.. +.-+++.. .+.+. =..++++.|
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~----LkhiiilQN 187 (466)
T KOG0466|consen 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMK----LKHIIILQN 187 (466)
T ss_pred cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhh----hceEEEEec
Confidence 1111 1 1256999999987655444444456888888877642 22222221 12222 246889999
Q ss_pred CCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc--CCceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 119 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
|.|+..+.... ...++++.|...- ...|++++||.-..|++-+.+.|++.+.-+-+
T Consensus 188 KiDli~e~~A~----------eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 188 KIDLIKESQAL----------EQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred hhhhhhHHHHH----------HHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 99998765421 2345666676643 33689999999999999999999999876543
|
|
| >KOG1487|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-07 Score=65.26 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=57.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc-------ccCCCCCCCc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD-------RLRPLSYPQT 78 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~-------~~~~~~~~~~ 78 (195)
-++-++|.|.+||||++..+.+-.. ...|..|+-........+++-+ +++.|+||--+-. .......+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaK--iqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAK--IQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccc--eeeecCcchhcccccCCCCccEEEEEeecc
Confidence 3789999999999999999987432 2344445544444455555554 5599999832211 1122345678
Q ss_pred cEEEEEEeCCChhcHHHH
Q psy10443 79 DVFLICYSVVSPSSFDNV 96 (195)
Q Consensus 79 d~~i~v~d~~~~~s~~~~ 96 (195)
+.+++|.|+-.|-+...+
T Consensus 138 nli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred cEEEEEeeccCcccHHHH
Confidence 999999998776554443
|
|
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.5e-08 Score=75.52 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC-----CC-CCcccceeecc-----------ceeEEeCCEEEEEEEEeCCCCccccc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS-----FP-GEYVPTVFDNY-----------SAPFTVDGIPVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~-----~~-~~~~~t~~~~~-----------~~~~~~~~~~~~l~~~D~~G~~~~~~ 69 (195)
-+|-+.-.-.+||||+-.+.+... +. .....++.+.. +.-.....+.++++++|||||-.|.-
T Consensus 40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~ 119 (721)
T KOG0465|consen 40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTF 119 (721)
T ss_pred cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEE
Confidence 467777778899999998865421 00 00111111111 11111223467888999999999998
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
.....++-.|++++|+++...-.-+... .|.+.-+. ++|.+..+||.|....+
T Consensus 120 EVeRALrVlDGaVlvl~aV~GVqsQt~t-V~rQ~~ry---~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 120 EVERALRVLDGAVLVLDAVAGVESQTET-VWRQMKRY---NVPRICFINKMDRMGAS 172 (721)
T ss_pred EehhhhhhccCeEEEEEcccceehhhHH-HHHHHHhc---CCCeEEEEehhhhcCCC
Confidence 8888999999999999987654333333 37666655 79999999999987543
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=69.96 Aligned_cols=55 Identities=25% Similarity=0.388 Sum_probs=36.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~ 64 (195)
+.++++++|.||+|||||+|+|.+.... .....++... ..+.++. .+.++||||-
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence 5689999999999999999999976432 2222232221 2233322 3469999996
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-07 Score=63.90 Aligned_cols=56 Identities=21% Similarity=0.166 Sum_probs=36.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG 63 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G 63 (195)
...+++++|.+|+||||+++++.+... ....++.+.........-+ ..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKIT--SKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcC--CCEEEEECcC
Confidence 467899999999999999999997542 2223333322221111112 2467999998
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG0099|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.9e-08 Score=68.51 Aligned_cols=129 Identities=13% Similarity=0.185 Sum_probs=77.1
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCC----------hhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCC
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVS----------PSSFDNVTSKWYPELKHH--CPDAPIILVGTKID 121 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D 121 (195)
+.++.+|++||..-+.-|-+++.+..++|||+..++ ...+++... +...+..+ ...+.+++.+||.|
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~-LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALN-LFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHH-HHHHHHhhhHHhhhheeEEecHHH
Confidence 558899999999999999999999999999999874 122233222 22222211 12578899999999
Q ss_pred cccchHhhhhh--hhc-------C-C-----CC-ccHH--HHHHHHHH--------c--C--CceeEEeccCCcccHHHH
Q psy10443 122 LREDRETLNLL--SEQ-------N-L-----SP-VKRE--QGQKLANK--------I--R--AVKYMECSALTQRGLRQV 171 (195)
Q Consensus 122 ~~~~~~~~~~~--~~~-------~-~-----~~-~~~~--~~~~~~~~--------~--~--~~~~~~~Sa~~~~~v~~~ 171 (195)
+.......... ++. . + .. .++. .+.-|.+. . + -+-...+.|.+.++++.+
T Consensus 281 llaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrV 360 (379)
T KOG0099|consen 281 LLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 360 (379)
T ss_pred HHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHH
Confidence 97644322211 000 0 0 00 0000 01111110 0 1 023455788999999999
Q ss_pred HHHHHHHHcCCC
Q psy10443 172 FDEAVRAVLRPE 183 (195)
Q Consensus 172 ~~~l~~~~~~~~ 183 (195)
|+...+.+.+..
T Consensus 361 FnDcrdiIqr~h 372 (379)
T KOG0099|consen 361 FNDCRDIIQRMH 372 (379)
T ss_pred HHHHHHHHHHHH
Confidence 999888776543
|
|
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.7e-07 Score=68.18 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=82.4
Q ss_pred EEEEEeCCCCccccccCCCCCCCccEEEEEEeCCCh----------hcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcc
Q psy10443 55 SLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSP----------SSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLR 123 (195)
Q Consensus 55 ~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~ 123 (195)
.+.++|++|+...+.-|..++.+++++|||+++++- ..+.+....|-...... ..+.|++|++||.|+.
T Consensus 237 ~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 237 KFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLF 316 (389)
T ss_dssp EEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHH
T ss_pred ccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHH
Confidence 456999999998899999999999999999998742 23444444344444432 4689999999999987
Q ss_pred cchHhhhh-hhhcCCCC-----ccHHHHHHHHHH--------c---CCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 124 EDRETLNL-LSEQNLSP-----VKREQGQKLANK--------I---RAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 124 ~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~--------~---~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
...-.... ....-+.. -..+.+..|... . ..+.+..++|.+..+++.+|+.+.+.+
T Consensus 317 ~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 317 EEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 64433222 22211211 223444443332 1 224567899999999999999988754
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=71.16 Aligned_cols=82 Identities=15% Similarity=0.069 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCE---------------EEEEEEEeCCCCccccc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGI---------------PVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~~~D~~G~~~~~~ 69 (195)
+++.++|.|++|||||.+.+++... ..+|+.++.......+.+.+. ...+.+.|+||-..-.+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998755 345666654433334444331 13567999999543211
Q ss_pred -------cCCCCCCCccEEEEEEeCC
Q psy10443 70 -------LRPLSYPQTDVFLICYSVV 88 (195)
Q Consensus 70 -------~~~~~~~~~d~~i~v~d~~ 88 (195)
.....++++|+++.|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1222467899999999985
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.2e-07 Score=63.57 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=59.1
Q ss_pred CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
....+.++|.+++|+|++++...... .+...+ .+.|+++|+||+|+..... . ....++.+
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~----~~k~~ilVlNK~Dl~~~~~------------~--~~~~~~~~ 72 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL----GNKPRIIVLNKADLADPKK------------T--KKWLKYFE 72 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh----cCCCEEEEEehhhcCChHH------------H--HHHHHHHH
Confidence 35567899999999999876543221 122222 3579999999999864321 0 11111222
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
... ..++.+||+++.|++++.+.+.+.+.
T Consensus 73 ~~~-~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 73 SKG-EKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred hcC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 222 46889999999999999999988763
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-07 Score=68.62 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=61.9
Q ss_pred CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
....+..+|++++|+|+.++.+.... .+...+ .+.|+++|+||+|+..... .....++..
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~--------------~~~~~~~~~ 74 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAV--------------TKQWLKYFE 74 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHH--------------HHHHHHHHH
Confidence 35567899999999999877553322 122333 2689999999999864321 011111122
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
..+ .+++.+||+++.|++++.+.+.+.+.+..
T Consensus 75 ~~~-~~vi~iSa~~~~gi~~L~~~i~~~~~~~~ 106 (276)
T TIGR03596 75 EKG-IKALAINAKKGKGVKKIIKAAKKLLKEKN 106 (276)
T ss_pred HcC-CeEEEEECCCcccHHHHHHHHHHHHHHhh
Confidence 233 56899999999999999999988775443
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-07 Score=74.96 Aligned_cols=115 Identities=18% Similarity=0.125 Sum_probs=76.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCC------cccceeeccceeE-------EeCCEEEEEEEEeCCCCcccc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGE------YVPTVFDNYSAPF-------TVDGIPVSLGLWDTAGQEDYD 68 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~------~~~t~~~~~~~~~-------~~~~~~~~l~~~D~~G~~~~~ 68 (195)
..--+++++-.-..|||||...|.... +... +..+.++.....+ ..-...+.++++|.|||-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 445689999999999999999987642 1111 1111122221111 222345678899999999999
Q ss_pred ccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCc
Q psy10443 69 RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDL 122 (195)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~ 122 (195)
+......+-+|++++++|+...-.-+...- +.+.. ..+...++|+||+|.
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~v-lrq~~---~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAV-LRQAW---IEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHH-HHHHH---HccCceEEEEehhhh
Confidence 999999999999999999987544333220 11111 126778899999993
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.7e-07 Score=70.95 Aligned_cols=142 Identities=19% Similarity=0.222 Sum_probs=87.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecccee-EEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP-FTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+++-++|+|+||+|||||++.|..+. .. .+.+....+ ..+.++.-++.|..+|. ...++. ....-+|.++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~-tk----~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVl 138 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRF-TK----QTIDEIRGPITVVSGKTRRITFLECPS--DLHQMI-DVAKIADLVL 138 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHH-HH----hhhhccCCceEEeecceeEEEEEeChH--HHHHHH-hHHHhhheeE
Confidence 468899999999999999999988642 11 122222332 34467777888999883 333332 2334689999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+++|.+-.-..+.. .++..+..+ +.| ++-|++..|+......... ......-+.|..-+.+..+|.+|
T Consensus 139 LlIdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlfk~~stLr~-------~KKrlkhRfWtEiyqGaKlFyls 207 (1077)
T COG5192 139 LLIDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLFKNPSTLRS-------IKKRLKHRFWTEIYQGAKLFYLS 207 (1077)
T ss_pred EEeccccCceehHH--HHHHHHhhc--CCCceEEEEeecccccChHHHHH-------HHHHHhhhHHHHHcCCceEEEec
Confidence 99998754333333 266666554 444 5667799998765321110 00011224566666667788888
Q ss_pred cCC
Q psy10443 162 ALT 164 (195)
Q Consensus 162 a~~ 164 (195)
...
T Consensus 208 gV~ 210 (1077)
T COG5192 208 GVE 210 (1077)
T ss_pred ccc
Confidence 664
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-07 Score=68.74 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=37.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
..++++++|.||||||||+|+|.+.... ...++++... ..+.++ . .+.++||||-.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~-~--~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLG-K--GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeC-C--cEEEEECCCcC
Confidence 5689999999999999999999986531 2222333221 122232 2 35599999963
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=66.17 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
..+++++|.+|+|||||+|.|.+..
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999753
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.3e-07 Score=68.13 Aligned_cols=82 Identities=21% Similarity=0.390 Sum_probs=56.5
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH----HHHHHcC
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ----KLANKIR 153 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 153 (195)
.+.+++|+|+.|... .|...+.....+.|+++|+||+|+.... ...++.. .+++..+
T Consensus 70 ~~lIv~VVD~~D~~~------s~~~~L~~~~~~kpviLViNK~DLl~~~-------------~~~~~i~~~l~~~~k~~g 130 (365)
T PRK13796 70 DALVVNVVDIFDFNG------SWIPGLHRFVGNNPVLLVGNKADLLPKS-------------VKKNKVKNWLRQEAKELG 130 (365)
T ss_pred CcEEEEEEECccCCC------chhHHHHHHhCCCCEEEEEEchhhCCCc-------------cCHHHHHHHHHHHHHhcC
Confidence 348899999987432 2444555444478999999999996532 2222233 3344444
Q ss_pred C--ceeEEeccCCcccHHHHHHHHHHH
Q psy10443 154 A--VKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 154 ~--~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
. ..++.+||+++.|++++++.+.+.
T Consensus 131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 131 LRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 2 258999999999999999998765
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.7e-07 Score=79.22 Aligned_cols=113 Identities=20% Similarity=0.143 Sum_probs=61.5
Q ss_pred EEEEcCCCCchHHHHHHhhcCCCCCCc--ccce----eeccceeEEeCCEEEEEEEEeCCCC----c----cccccCCCC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTDSFPGEY--VPTV----FDNYSAPFTVDGIPVSLGLWDTAGQ----E----DYDRLRPLS 74 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~~~~~~~--~~t~----~~~~~~~~~~~~~~~~l~~~D~~G~----~----~~~~~~~~~ 74 (195)
-+|+|++|+||||++.+- +..++-.. .... +........+.+. -.++|++|. + .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHHHH
Confidence 479999999999999876 33332111 0110 1111111112222 238999992 1 112223333
Q ss_pred C---------CCccEEEEEEeCCChh-----cHHHHHH---hhHHHHhh-hCCCCcEEEEeeCCCcccc
Q psy10443 75 Y---------PQTDVFLICYSVVSPS-----SFDNVTS---KWYPELKH-HCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 75 ~---------~~~d~~i~v~d~~~~~-----s~~~~~~---~~~~~~~~-~~~~~p~vvv~nK~D~~~~ 125 (195)
+ +..+|+|+++|+++-- ....... ..+..+.. ..-.+||.|++||+|+..-
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 2 3589999999986521 1111111 12222222 3458999999999998754
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >KOG1954|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.2e-07 Score=68.27 Aligned_cols=116 Identities=22% Similarity=0.276 Sum_probs=70.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCC---cccceeeccce------------eEEeCC-EE------------------
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGE---YVPTVFDNYSA------------PFTVDG-IP------------------ 53 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~---~~~t~~~~~~~------------~~~~~~-~~------------------ 53 (195)
=|+++|.=..||||+|+.|+...+++- ..||+...... ...++. ..
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~cs 139 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCS 139 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHh
Confidence 488999999999999999999877532 22333111100 011110 00
Q ss_pred -------EEEEEEeCCCCcc-----------ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEE
Q psy10443 54 -------VSLGLWDTAGQED-----------YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIIL 115 (195)
Q Consensus 54 -------~~l~~~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vv 115 (195)
=.+.++|+||--. |......+...+|.++++||+..-+--.+.. ..+..++.+ .-.+-|
T Consensus 140 qmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~-~vi~aLkG~--EdkiRV 216 (532)
T KOG1954|consen 140 QLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFK-RVIDALKGH--EDKIRV 216 (532)
T ss_pred cCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHH-HHHHHhhCC--cceeEE
Confidence 1277999999311 1233344667899999999987544333333 244555544 345667
Q ss_pred EeeCCCcccch
Q psy10443 116 VGTKIDLREDR 126 (195)
Q Consensus 116 v~nK~D~~~~~ 126 (195)
|.||+|...+.
T Consensus 217 VLNKADqVdtq 227 (532)
T KOG1954|consen 217 VLNKADQVDTQ 227 (532)
T ss_pred EeccccccCHH
Confidence 78999988764
|
|
| >KOG1491|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-07 Score=69.35 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=58.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeC---------------CEEEEEEEEeCCCCcccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVD---------------GIPVSLGLWDTAGQEDYD 68 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~---------------~~~~~l~~~D~~G~~~~~ 68 (195)
..+++.++|.|+|||||+.|.|+.... +.+++.++.+.-...+.+. -....++++|++|--.-.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 457999999999999999999999754 4666666644333333322 233568899999843221
Q ss_pred ----cc---CCCCCCCccEEEEEEeCCC
Q psy10443 69 ----RL---RPLSYPQTDVFLICYSVVS 89 (195)
Q Consensus 69 ----~~---~~~~~~~~d~~i~v~d~~~ 89 (195)
.+ ...-++.+|+++-|+++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 11 2233678999999999854
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-07 Score=69.71 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=53.4
Q ss_pred EEEEEEeCCCCccccccC----CCC--CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchH
Q psy10443 54 VSLGLWDTAGQEDYDRLR----PLS--YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 127 (195)
+.+.++||+|........ ... ..+.|.+++|+|++...........+...+ + +--+|+||.|.....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-----~-~~giIlTKlD~~~~~- 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-----G-IDGVILTKVDADAKG- 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-----C-CCEEEEeeecCCCCc-
Confidence 457799999975432111 111 225788999999976433222211122211 1 346778999975542
Q ss_pred hhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHH
Q psy10443 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172 (195)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 172 (195)
..+...+...+ .|+..++ +|++++++.
T Consensus 296 ---------------G~~ls~~~~~~-~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 296 ---------------GAALSIAYVIG-KPILFLG--VGQGYDDLI 322 (336)
T ss_pred ---------------cHHHHHHHHHC-cCEEEEe--CCCChhhcc
Confidence 22444445555 6777776 788887764
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-05 Score=52.64 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=42.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTA 62 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~ 62 (195)
+-.+||++.|+|||||||++.++...-- +...+.+..+...+.-+++.+-+.+.|+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~--~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLR--EKGYKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHH--hcCceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 3468999999999999999998875321 11124555566667778888888888887
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=5e-07 Score=66.85 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=61.3
Q ss_pred CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
....+..+|++++|+|+.++.+.... .+...+. +.|+++|+||+|+..... .+....+..
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~~----~kp~iiVlNK~DL~~~~~--------------~~~~~~~~~ 77 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSENP--MIDKIIG----NKPRLLILNKSDLADPEV--------------TKKWIEYFE 77 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCCh--hHHHHhC----CCCEEEEEEchhcCCHHH--------------HHHHHHHHH
Confidence 45567899999999999877553321 1222222 689999999999864311 111122222
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
..+ .+++.+|++++.|++++.+.+.+.+...
T Consensus 78 ~~~-~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 78 EQG-IKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred HcC-CeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 333 5689999999999999999988876543
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.1e-07 Score=68.21 Aligned_cols=55 Identities=25% Similarity=0.248 Sum_probs=36.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~ 64 (195)
+.+++.|+|.||||||||||+|.+.... .+.++++.... .+.++. .+.++||||-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q--~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ--WIKLDD---GIYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE--EEEcCC---CeEEecCCCc
Confidence 4588999999999999999999987541 22222222111 122222 2569999994
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.4e-07 Score=60.23 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=36.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG 63 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G 63 (195)
...+++++|.+|+|||||+|.+.+... ......++..... ...+ . .+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~-~--~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD-N--KIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec-C--CEEEEECCC
Confidence 467899999999999999999998542 1222333333222 2222 2 356999998
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.1e-05 Score=60.03 Aligned_cols=152 Identities=18% Similarity=0.251 Sum_probs=90.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC-----------------CCC----CCcccceeeccc----eeEEe-CCEEEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD-----------------SFP----GEYVPTVFDNYS----APFTV-DGIPVSLGLW 59 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~-----------------~~~----~~~~~t~~~~~~----~~~~~-~~~~~~l~~~ 59 (195)
.+=|.|+|+-.+||||||.||... .++ +...-|++..|- ..+.+ ++..+++.+.
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 466899999999999999999763 111 122222333321 23334 5778889999
Q ss_pred eCCC--------Cc-----cc-cccCCC---------------CCC--CccEEEEEEeCC----ChhcHHHHHHhhHHHH
Q psy10443 60 DTAG--------QE-----DY-DRLRPL---------------SYP--QTDVFLICYSVV----SPSSFDNVTSKWYPEL 104 (195)
Q Consensus 60 D~~G--------~~-----~~-~~~~~~---------------~~~--~~d~~i~v~d~~----~~~s~~~~~~~~~~~~ 104 (195)
|+-| +. +. ..-|.. .++ ..-|+++.-|-| .++++.++.++-...+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 9876 11 11 011111 111 123555555543 3567777776667777
Q ss_pred hhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC--cccHHHHHHH
Q psy10443 105 KHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT--QRGLRQVFDE 174 (195)
Q Consensus 105 ~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~v~~~~~~ 174 (195)
+.. +.|+++++|-.+-... ...+...++..+|+ ++++.+++.. .+.+..+++.
T Consensus 177 k~i--gKPFvillNs~~P~s~--------------et~~L~~eL~ekY~-vpVlpvnc~~l~~~DI~~Il~~ 231 (492)
T PF09547_consen 177 KEI--GKPFVILLNSTKPYSE--------------ETQELAEELEEKYD-VPVLPVNCEQLREEDITRILEE 231 (492)
T ss_pred HHh--CCCEEEEEeCCCCCCH--------------HHHHHHHHHHHHhC-CcEEEeehHHcCHHHHHHHHHH
Confidence 766 8999999998885544 23345667777888 6887776543 3344444443
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.6e-07 Score=61.81 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
--++++|.+|||||||+|.|...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36789999999999999999986
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.7e-06 Score=61.00 Aligned_cols=142 Identities=13% Similarity=0.127 Sum_probs=77.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC----------CCcccce-------eeccceeEEe------------------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP----------GEYVPTV-------FDNYSAPFTV------------------ 49 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~----------~~~~~t~-------~~~~~~~~~~------------------ 49 (195)
++--|+++|++|+||||++..+...-.. +.+.... .......+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999887653100 0000000 0000001000
Q ss_pred CCEEEEEEEEeCCCCcccccc--------C----CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEe
Q psy10443 50 DGIPVSLGLWDTAGQEDYDRL--------R----PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117 (195)
Q Consensus 50 ~~~~~~l~~~D~~G~~~~~~~--------~----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~ 117 (195)
....+.+.++||||....... . ...-...+..++|+|++.... .+.+ ....... --+.-+|+
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~-a~~f~~~---~~~~giIl 266 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQ-AKAFHEA---VGLTGIIL 266 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHH-HHHHHhh---CCCCEEEE
Confidence 123356779999996543211 0 111235678999999985422 2221 1111111 12447888
Q ss_pred eCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHH
Q psy10443 118 TKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQV 171 (195)
Q Consensus 118 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 171 (195)
||.|.... ...+.......+ .|+..++ +|++++++
T Consensus 267 TKlD~t~~----------------~G~~l~~~~~~~-~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 267 TKLDGTAK----------------GGVVFAIADELG-IPIKFIG--VGEGIDDL 301 (318)
T ss_pred ECCCCCCC----------------ccHHHHHHHHHC-CCEEEEe--CCCChhhC
Confidence 99995433 223455556666 6887777 77877665
|
|
| >KOG1534|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-06 Score=59.71 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=49.6
Q ss_pred CCcEEEEeeCCCcccchHhhhhhhhcCCCC-----------c------cHHHHHHHHHHcCCceeEEeccCCcccHHHHH
Q psy10443 110 DAPIILVGTKIDLREDRETLNLLSEQNLSP-----------V------KREQGQKLANKIRAVKYMECSALTQRGLRQVF 172 (195)
Q Consensus 110 ~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-----------~------~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 172 (195)
.+|-+=|++|.|+.........-+.+.+.. . ....+..+...++.+.|++....+.++++.++
T Consensus 164 E~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL 243 (273)
T KOG1534|consen 164 EVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIIL 243 (273)
T ss_pred cCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHH
Confidence 689999999999988744333322222111 1 11234556667888899999999999999999
Q ss_pred HHHHHHHc
Q psy10443 173 DEAVRAVL 180 (195)
Q Consensus 173 ~~l~~~~~ 180 (195)
..|-..+.
T Consensus 244 ~~ID~aiQ 251 (273)
T KOG1534|consen 244 SYIDDAIQ 251 (273)
T ss_pred HHHHHHHH
Confidence 99888765
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=58.98 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=18.8
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
++++|..|+||||+++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999998764
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >KOG0085|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.6e-07 Score=63.89 Aligned_cols=129 Identities=13% Similarity=0.184 Sum_probs=74.7
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCCh----------hcHHHHHHhhHHHHhhh--CCCCcEEEEeeCC
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSP----------SSFDNVTSKWYPELKHH--CPDAPIILVGTKI 120 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~ 120 (195)
++.+.+.|++|+..-+.-|.+++++...++|++.++.. ...++... +...+-.+ +.+.++++..||.
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkA-LFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHH-HHHHHhccccccCCceEEEechh
Confidence 34466778888777777777777777777766665432 12222221 22222222 3478999999999
Q ss_pred CcccchHhhhhhhhcCC----CCccHHHHHHHHHHc---------CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 121 DLREDRETLNLLSEQNL----SPVKREQGQKLANKI---------RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 121 D~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
|+.++...-.-..+.-+ -..+.+.+++|..+. ..+.-..+.|.+.+|++-+|.++.+.+...
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~ 351 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 351 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence 99876533221111111 112223344444332 112235578889999999999998887654
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-06 Score=66.52 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEcCCCCchHHHHHHhhcCC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~~ 30 (195)
++|+|.+|||||||+|+|.+..
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 7899999999999999999753
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.6e-06 Score=62.38 Aligned_cols=84 Identities=23% Similarity=0.192 Sum_probs=56.6
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
..++|.+++|+++..+-... ..+.++..+... ++|.++|+||+|+..... +....+......
T Consensus 110 aANvD~vliV~s~~p~~~~~-~ldr~L~~a~~~--~i~piIVLNK~DL~~~~~---------------~~~~~~~~~~~g 171 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLR-RIERYLALAWES--GAEPVIVLTKADLCEDAE---------------EKIAEVEALAPG 171 (356)
T ss_pred EEeCCEEEEEEecCCCCChh-HHHHHHHHHHHc--CCCEEEEEEChhcCCCHH---------------HHHHHHHHhCCC
Confidence 46889999999996433332 333465555554 788899999999975421 111222222223
Q ss_pred ceeEEeccCCcccHHHHHHHHH
Q psy10443 155 VKYMECSALTQRGLRQVFDEAV 176 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~ 176 (195)
.+++.+|++++.|++++..+|.
T Consensus 172 ~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 172 VPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred CcEEEEECCCCccHHHHHHHhh
Confidence 6889999999999999988874
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.8e-06 Score=62.30 Aligned_cols=94 Identities=12% Similarity=0.088 Sum_probs=54.1
Q ss_pred EEEEEEEeCCCCccccccC------------CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCC
Q psy10443 53 PVSLGLWDTAGQEDYDRLR------------PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~ 120 (195)
.+.+.++||||........ ...-..+|.+++|+|++... ..+. .. ..+.+.. -+--+|+||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~-~~f~~~~--~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QA-KVFNEAV--GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HH-HHHHhhC--CCCEEEEEcc
Confidence 3567799999975433221 11123489999999997432 2222 11 2222111 1457888999
Q ss_pred CcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHH
Q psy10443 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQV 171 (195)
Q Consensus 121 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 171 (195)
|..... ..+.......+ .|+..++ +|++++++
T Consensus 228 De~~~~----------------G~~l~~~~~~~-~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 228 DGTAKG----------------GIILSIAYELK-LPIKFIG--VGEKIDDL 259 (272)
T ss_pred CCCCCc----------------cHHHHHHHHHC-cCEEEEe--CCCChHhC
Confidence 975542 23444455555 6777776 67777665
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.3e-08 Score=72.69 Aligned_cols=116 Identities=19% Similarity=0.121 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC--CC--CC--Ccccceee-----------ccceeEEeCCEEEEEEEEeCCCCccccc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD--SF--PG--EYVPTVFD-----------NYSAPFTVDGIPVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~--~~--~~--~~~~t~~~-----------~~~~~~~~~~~~~~l~~~D~~G~~~~~~ 69 (195)
-+|.++..-.+||||.-.|++.- .. .+ ....|..+ ..+..++++-+.++++++|+||+-.|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 47889999999999999887542 11 00 01111111 1123455566677888999999999998
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
....+++-.|+++.|+|++..-.-+.+. .|.+.-+. ++|....+||+|....+
T Consensus 118 everclrvldgavav~dasagve~qtlt-vwrqadk~---~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTLT-VWRQADKF---KIPAHCFINKMDKLAAN 170 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcccceee-eehhcccc---CCchhhhhhhhhhhhhh
Confidence 8889999999999999998765555554 47654443 68889999999986543
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-05 Score=58.41 Aligned_cols=99 Identities=19% Similarity=0.166 Sum_probs=71.6
Q ss_pred ccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
++-..+.+.-..+.|-+++|+.+.+|+--....++++-..... ++..+|++||+|+....+ ...++
T Consensus 67 ~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~------------~~~~~ 132 (301)
T COG1162 67 PRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEE------------AAVKE 132 (301)
T ss_pred cccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchH------------HHHHH
Confidence 3444555556667899999999999876666655555555544 788888899999988743 11134
Q ss_pred HHHHHHHcCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 145 GQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 145 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
...+...++ .+++.+|+++++|++++...+...
T Consensus 133 ~~~~y~~~g-y~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 133 LLREYEDIG-YPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred HHHHHHhCC-eeEEEecCcCcccHHHHHHHhcCC
Confidence 555666677 789999999999999988877654
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.2e-06 Score=60.31 Aligned_cols=87 Identities=17% Similarity=0.117 Sum_probs=50.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC--CCCC--CcccceeeccceeEEe-CCEEEEEEEEeCCCCcccccc------CCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD--SFPG--EYVPTVFDNYSAPFTV-DGIPVSLGLWDTAGQEDYDRL------RPL 73 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~--~~~~--~~~~t~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~------~~~ 73 (195)
+-.-|.|+|++++|||+|+|.|++. .|.. ...+++..-....... .+....+.++||+|-...... ...
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 3456899999999999999999998 5532 1223332211111111 123456779999996543221 111
Q ss_pred CCCC--ccEEEEEEeCCChh
Q psy10443 74 SYPQ--TDVFLICYSVVSPS 91 (195)
Q Consensus 74 ~~~~--~d~~i~v~d~~~~~ 91 (195)
.+.. ++.+|+..+.+...
T Consensus 86 ~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 86 ALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHhCEEEEeccCcccH
Confidence 2222 68788777765443
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >KOG0447|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.6e-06 Score=64.17 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=43.3
Q ss_pred EEEEEeCCCC-------------ccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCC
Q psy10443 55 SLGLWDTAGQ-------------EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKID 121 (195)
Q Consensus 55 ~l~~~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D 121 (195)
++.+.|+||- +....+...++.+.+++|+|+---+-+........+...+.- .+...++|++|.|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP--~GrRTIfVLTKVD 490 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDP--HGRRTIFVLTKVD 490 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCC--CCCeeEEEEeecc
Confidence 4678999992 222355667888999999998633222222222212223322 2678899999999
Q ss_pred cccc
Q psy10443 122 LRED 125 (195)
Q Consensus 122 ~~~~ 125 (195)
+++.
T Consensus 491 lAEk 494 (980)
T KOG0447|consen 491 LAEK 494 (980)
T ss_pred hhhh
Confidence 9876
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.9e-06 Score=65.71 Aligned_cols=109 Identities=14% Similarity=0.096 Sum_probs=57.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-------CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCC-----
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-------PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLS----- 74 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~----- 74 (195)
.++.++|.+|||||||+|++++... ...++.|+.... .+.++ .. +.++||||-.....+ ..+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~-~~--~~l~DtPG~~~~~~~-~~~l~~~~ 228 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLD-DG--HSLYDTPGIINSHQM-AHYLDKKD 228 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeC-CC--CEEEECCCCCChhHh-hhhcCHHH
Confidence 4899999999999999999997432 122223332211 12221 12 349999995432211 111
Q ss_pred ------CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 75 ------YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 75 ------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
-.......+.++....-.+..+. ++..+.. ++..+.+.+++.+..+.
T Consensus 229 l~~~~~~~~i~~~~~~l~~~q~~~~ggl~--~~d~~~~--~~~~~~~~~~~~~~~h~ 281 (360)
T TIGR03597 229 LKYITPKKEIKPKTYQLNPNQTLFLGGLA--RFDYLKG--EKTSFTFYVSNELNIHR 281 (360)
T ss_pred HhhcCCCCccCceEEEeCCCCEEEEceEE--EEEEecC--CceEEEEEccCCceeEe
Confidence 12345566666644322222221 2222222 24567777777776654
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.4e-06 Score=63.20 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
-.++++|.+|+|||||+|.|.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 468999999999999999999854
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=98.20 E-value=5e-06 Score=45.08 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=30.0
Q ss_pred ccEEEEEEeCCChhcH--HHHHHhhHHHHhhhCCCCcEEEEeeCCC
Q psy10443 78 TDVFLICYSVVSPSSF--DNVTSKWYPELKHHCPDAPIILVGTKID 121 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~vvv~nK~D 121 (195)
.++++|++|++....+ ++.. .++..++..+++.|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~-~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQL-SLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHH-HHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHH-HHHHHHHHHcCCCCEEEEEeccC
Confidence 5789999999976554 4444 47788888889999999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >KOG3859|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.4e-05 Score=57.65 Aligned_cols=120 Identities=20% Similarity=0.251 Sum_probs=72.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-----eeEEeCCEEEEEEEEeCCCC-------cccccc--
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-----APFTVDGIPVSLGLWDTAGQ-------EDYDRL-- 70 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-----~~~~~~~~~~~l~~~D~~G~-------~~~~~~-- 70 (195)
=.|+|+.+|..|.|||||+..|++..+.....+....... +...-.+..+++.+.|+.|- +.|...
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 3689999999999999999999998775444443333221 22223466678889999882 112100
Q ss_pred -----C-------------CCCCC--CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHh
Q psy10443 71 -----R-------------PLSYP--QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRET 128 (195)
Q Consensus 71 -----~-------------~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~ 128 (195)
. ...+. ..+++++.+..+- .++..+.-.....+. ..+.++-++-|.|.....+.
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld---skVNIIPvIAKaDtisK~eL 194 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD---SKVNIIPVIAKADTISKEEL 194 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh---hhhhhHHHHHHhhhhhHHHH
Confidence 0 00111 3577777777763 344444322233333 35667777789998765543
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.7e-06 Score=61.52 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|.+|||||||+|.|.+.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 6889999999999999999975
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.7e-06 Score=64.42 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++|+|.+|||||||+|.|.+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 3799999999999999999975
|
|
| >KOG3929|consensus | Back alignment and domain information |
|---|
Probab=98.17 E-value=1e-06 Score=62.61 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=85.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEE--EEEEEEeCCCCccccccCCCCCC----C
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIP--VSLGLWDTAGQEDYDRLRPLSYP----Q 77 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~l~~~D~~G~~~~~~~~~~~~~----~ 77 (195)
..+.-|++.|+.+. |++|++.+.+.- ....|+....++......+.+ -..++|.++|......+..--++ .
T Consensus 43 ~~E~~I~~~Gn~~~--tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~ 119 (363)
T KOG3929|consen 43 KFEFFIGSKGNGGK--TTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR 119 (363)
T ss_pred cceeEEEEecCCce--eEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh
Confidence 34567888876654 999999987643 334556655555444444432 34679999886554433332222 2
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHh--------------------------hh----CC--------CCcEEEEeeC
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELK--------------------------HH----CP--------DAPIILVGTK 119 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~--------------------------~~----~~--------~~p~vvv~nK 119 (195)
.-.+|++.|+++++.+....+..+..++ +. .+ .+||+||+.|
T Consensus 120 ~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsK 199 (363)
T KOG3929|consen 120 TFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSK 199 (363)
T ss_pred hhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccc
Confidence 3467899999998665432221111111 10 01 3799999999
Q ss_pred CCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 120 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
.|.-+..+++. |.....-.+..+..+|+ ..+..|++
T Consensus 200 YDvFq~Fesek-------RkH~C~~LRf~Ah~yGa-aLlmfSsk 235 (363)
T KOG3929|consen 200 YDVFQDFESEK-------RKHICKTLRFVAHYYGA-ALLMFSSK 235 (363)
T ss_pred hhhhccccHHH-------HHHHHHHHHHHHHHhhh-HHHHHHHh
Confidence 99877654333 22333334555556663 34445655
|
|
| >KOG0469|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.9e-06 Score=64.53 Aligned_cols=119 Identities=20% Similarity=0.216 Sum_probs=78.2
Q ss_pred CCCCcc-eEEEEEcCCCCchHHHHHHhhcCC--CC------CCcccceeeccceeEEe----------------------
Q psy10443 1 MSSGRP-IKCVVVGDGTVGKTCMLISYTTDS--FP------GEYVPTVFDNYSAPFTV---------------------- 49 (195)
Q Consensus 1 m~~~~~-~~i~v~G~~~~GKtsli~~l~~~~--~~------~~~~~t~~~~~~~~~~~---------------------- 49 (195)
|.+.+. -++-|+-.-..|||||-..|.... +. ..+..|..+.....+++
T Consensus 13 M~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 13 MDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred hccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 334333 478899999999999999887631 11 11222222222111111
Q ss_pred -CCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 50 -DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 50 -~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
++..+.++++|.|||-.|.+.....++-.|+.++|+|.-+.--.+.-. .+.+.+.+. +.-+++.||.|.+
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTET-VLrQA~~ER---IkPvlv~NK~DRA 163 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIAER---IKPVLVMNKMDRA 163 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHH-HHHHHHHhh---ccceEEeehhhHH
Confidence 244577889999999999999999999999999999988764444322 244555543 4446678999964
|
|
| >KOG0459|consensus | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.7e-06 Score=61.18 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=92.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC--CCCCC---------------------cccceee------cc---ceeEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD--SFPGE---------------------YVPTVFD------NY---SAPFTVDG 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~~---------------------~~~t~~~------~~---~~~~~~~~ 51 (195)
+.+++++++|.-.+||||+-..+... ..... +..|... .. ...+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 56899999999999999998776542 00000 0000000 00 01111222
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChh---cHHHH-HHhhHHHHhhhCCCCcEEEEeeCCCcccchH
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPS---SFDNV-TSKWYPELKHHCPDAPIILVGTKIDLREDRE 127 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 127 (195)
-++.+.|.|||..|....-....+||..++|+++.-.+ .|+.- +..=...+.+...-...++++||+|-...+-
T Consensus 157 --~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 157 --KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred --eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 35669999999998777666777899999999874321 11100 0011122222233457888999999765432
Q ss_pred hhhhhhhcCCCCccHHHHHHHHHHcC-----CceeEEeccCCcccHHHHHH
Q psy10443 128 TLNLLSEQNLSPVKREQGQKLANKIR-----AVKYMECSALTQRGLRQVFD 173 (195)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~~~~ 173 (195)
..+.++ ...+....|.+..+ ...++++|..+|.++.+...
T Consensus 235 s~eRy~------E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 235 SNERYE------ECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred chhhHH------HHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 222111 11233444555332 24589999999999887653
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.7e-06 Score=64.27 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
..++.++|.+|||||||+|+|...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhh
Confidence 347999999999999999999864
|
|
| >KOG4273|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.6e-05 Score=52.60 Aligned_cols=170 Identities=15% Similarity=0.211 Sum_probs=97.7
Q ss_pred eEEEEEcCCCC--chHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEE--EEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 7 IKCVVVGDGTV--GKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVS--LGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 7 ~~i~v~G~~~~--GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
-.++|+|-+|+ ||.+++++|....|..+........+ ..-+++.+.|. +.+.-.+-.+.+.--.........+++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~-hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEF-HGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceee-eceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 35789999999 99999999988766433222221111 12233433332 222222222233222233344567899
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHh---------------hhhhhhcCCC---------
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRET---------------LNLLSEQNLS--------- 138 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~---------------~~~~~~~~~~--------- 138 (195)
+|+|.+....+..+.. |+.-..-+.-+ -++.++||.|.....-. ...+....-.
T Consensus 84 mvfdlse~s~l~alqd-wl~htdinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss 161 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQD-WLPHTDINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS 161 (418)
T ss_pred EEEeccchhhhHHHHh-hccccccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence 9999998888887774 87654433222 24667899997642210 0111110000
Q ss_pred --------CccHHHHHHHHHHcCCceeEEeccCC------------cccHHHHHHHHHHHHc
Q psy10443 139 --------PVKREQGQKLANKIRAVKYMECSALT------------QRGLRQVFDEAVRAVL 180 (195)
Q Consensus 139 --------~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~v~~~~~~l~~~~~ 180 (195)
........+|+.+++ +.+++.++.+ ..|++.+|.++.-.+.
T Consensus 162 llgsedasldirga~lewc~e~~-~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw 222 (418)
T KOG4273|consen 162 LLGSEDASLDIRGAALEWCLEHG-FEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW 222 (418)
T ss_pred ccccccchhhHHHHHHHHHHhcC-ceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence 012334678899998 7899988842 3578888888776554
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.8e-06 Score=61.56 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
-.++++|.+|+|||||+|.|.+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 358899999999999999999753
|
|
| >KOG1533|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.2e-05 Score=55.21 Aligned_cols=119 Identities=17% Similarity=0.134 Sum_probs=63.1
Q ss_pred EEEEeCCCCccccccCCC------CCCCccEEEE---EEeC---CChhcHHHHH-HhhHHHHhhhCCCCcEEEEeeCCCc
Q psy10443 56 LGLWDTAGQEDYDRLRPL------SYPQTDVFLI---CYSV---VSPSSFDNVT-SKWYPELKHHCPDAPIILVGTKIDL 122 (195)
Q Consensus 56 l~~~D~~G~~~~~~~~~~------~~~~~d~~i~---v~d~---~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~ 122 (195)
.-++|+|||-++...+.. +++.-+.=+. ++|+ ++|..+-... ..+..++. -..|-|=|+.|+|+
T Consensus 99 Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~---melphVNvlSK~Dl 175 (290)
T KOG1533|consen 99 YVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH---MELPHVNVLSKADL 175 (290)
T ss_pred EEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh---hcccchhhhhHhHH
Confidence 449999998765432221 2223333333 3333 5566554432 11222222 26788888999999
Q ss_pred ccchHh-----------hhh-----hhhcCCC----CccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 123 REDRET-----------LNL-----LSEQNLS----PVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 123 ~~~~~~-----------~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
...... ... ..+..++ ....+++-.+...++.+.|...+..+.+++-.+...|-+
T Consensus 176 ~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~IDk 250 (290)
T KOG1533|consen 176 LKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTIDK 250 (290)
T ss_pred HHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHHh
Confidence 764431 000 0011111 122344556677777777777777777777777666554
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.1e-05 Score=62.40 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhh
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~ 27 (195)
++.-|+++|.+||||||++..|.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999998886
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.2e-05 Score=52.31 Aligned_cols=58 Identities=12% Similarity=0.057 Sum_probs=36.2
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCC
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKID 121 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D 121 (195)
.+.+.++|++|.... ...++..+|-+++|...+-.+.+.-.. + ..+. .-=++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k--~-~~~~-----~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIK--A-GIME-----IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhh--h-hHhh-----hcCEEEEeCCC
Confidence 456779999885432 234888999999998877444433322 2 2222 12277789987
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.8e-06 Score=60.18 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.+++|.+|||||||+|+|...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 5688999999999999999974
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00012 Score=50.30 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=55.2
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhh
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNL 131 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~ 131 (195)
..+.+.++|+|+.... .....+..+|.+++++..+ ..+...+.. +...++.. +.|+.+|+||+|....
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~~~-~~~~l~~~--~~~~~vV~N~~~~~~~------ 158 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDLER-AVELVRHF--GIPVGVVINKYDLNDE------ 158 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHHHH-HHHHHHHc--CCCEEEEEeCCCCCcc------
Confidence 4567779999865322 2234567899999999987 345555543 55555544 5678999999996432
Q ss_pred hhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 132 LSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
..++..++.+.++ ++++
T Consensus 159 ---------~~~~~~~~~~~~~-~~vl 175 (179)
T cd03110 159 ---------IAEEIEDYCEEEG-IPIL 175 (179)
T ss_pred ---------hHHHHHHHHHHcC-CCeE
Confidence 1245566666666 4544
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.3e-06 Score=63.22 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++..|+++|.+|+||||.+..|..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467899999999999999977754
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.1e-05 Score=56.28 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|.-|+++|++||||||.+-+|..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa 23 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA 23 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHH
Confidence 34689999999999999977654
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00014 Score=49.76 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++|++.|.+|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998654
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.4e-05 Score=65.58 Aligned_cols=116 Identities=20% Similarity=0.117 Sum_probs=58.7
Q ss_pred EEEcCCCCchHHHHHHhhcC-CCCCCcccceeeccceeEEeC-CEEEEEEEEeCCCCc--------cccccCCC------
Q psy10443 10 VVVGDGTVGKTCMLISYTTD-SFPGEYVPTVFDNYSAPFTVD-GIPVSLGLWDTAGQE--------DYDRLRPL------ 73 (195)
Q Consensus 10 ~v~G~~~~GKtsli~~l~~~-~~~~~~~~t~~~~~~~~~~~~-~~~~~l~~~D~~G~~--------~~~~~~~~------ 73 (195)
+|+|++|+||||++..--.. .+............ .+..++ .-.=.-.++||+|.- .-...|..
T Consensus 129 ~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~-gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLk 207 (1188)
T COG3523 129 MVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGP-GTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLK 207 (1188)
T ss_pred EEecCCCCCcchHHhcccccCcchhhhccccccCC-CCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHHH
Confidence 68999999999998543221 11111111110000 011111 000122388998832 11222332
Q ss_pred ---CCCCccEEEEEEeCCChhcH--HHH---HHhh---HHHHhhh-CCCCcEEEEeeCCCcccch
Q psy10443 74 ---SYPQTDVFLICYSVVSPSSF--DNV---TSKW---YPELKHH-CPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 74 ---~~~~~d~~i~v~d~~~~~s~--~~~---~~~~---~~~~~~~-~~~~p~vvv~nK~D~~~~~ 126 (195)
..+..+|+|+.+|+++--.. .+. ...+ ++.+... .-..||.+++||.|+..-.
T Consensus 208 k~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF 272 (1188)
T COG3523 208 KYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGF 272 (1188)
T ss_pred HhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccH
Confidence 24568999999998652111 111 1111 2222222 3579999999999998743
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00018 Score=50.79 Aligned_cols=49 Identities=12% Similarity=0.056 Sum_probs=33.0
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
+...+++|.+|+|+|.+- .++..+. +......+. .=.++.+|+||.|..
T Consensus 150 Rg~~~~vD~vivVvDpS~-~sl~tae-ri~~L~~el-g~k~i~~V~NKv~e~ 198 (255)
T COG3640 150 RGTIEGVDLVIVVVDPSY-KSLRTAE-RIKELAEEL-GIKRIFVVLNKVDEE 198 (255)
T ss_pred cccccCCCEEEEEeCCcH-HHHHHHH-HHHHHHHHh-CCceEEEEEeeccch
Confidence 455678999999999873 4444443 233333333 237899999999965
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00016 Score=55.17 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-.++++|++|+||||++.+|...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999888753
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.6e-05 Score=58.27 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++-.|+++|+.|+||||++..|..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999988864
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.9e-05 Score=58.01 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=19.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhh
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~ 27 (195)
++.-++++|.+|+||||++..|.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 46789999999999999975543
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00013 Score=56.57 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-.++++|+.|+||||++..|.+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999987765
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00012 Score=57.02 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=19.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhh
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~ 27 (195)
++.-|+++|.+|+||||++..|.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 46789999999999999776554
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00037 Score=52.37 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=18.1
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 466799999999999999864
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.3e-05 Score=54.56 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=25.7
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
|.+.++..|+|.|.+|||||||.+.+...
T Consensus 1 ~~~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 1 MMMKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55678999999999999999999998763
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0014 Score=49.35 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=18.4
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++-|.=||||||++++++..
T Consensus 4 tvitGFLGsGKTTlL~~lL~~ 24 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLAN 24 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhc
Confidence 467788999999999999875
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00023 Score=48.66 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=30.0
Q ss_pred cEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
|++++|+|+.++.+-... .+...+.-...+.|+++|+||+|+....
T Consensus 1 DvVl~VvDar~p~~~~~~--~i~~~~~l~~~~kp~IlVlNK~DL~~~~ 46 (172)
T cd04178 1 DVILEVLDARDPLGCRCP--QVEEAVLQAGGNKKLVLVLNKIDLVPKE 46 (172)
T ss_pred CEEEEEEECCCCCCCCCH--HHHHHHHhccCCCCEEEEEehhhcCCHH
Confidence 789999999886433221 1333321112368999999999997643
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00014 Score=57.71 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-.|+|+|..|+||||++..|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999988764
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=3e-05 Score=49.66 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.|+|.|.+||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
|
... |
| >KOG1424|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.5e-05 Score=59.32 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=34.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~ 64 (195)
.+.|.+||-|||||||.||.|.++.-. ...++.+.- |. ++.+. . .+.++|+||-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKH-FQ-Ti~ls-~--~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKH-FQ-TIFLS-P--SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcce-eE-EEEcC-C--CceecCCCCc
Confidence 488999999999999999999997532 111111111 11 22222 2 2449999995
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00013 Score=49.86 Aligned_cols=66 Identities=17% Similarity=0.078 Sum_probs=36.4
Q ss_pred EEEEEEeCCCCcccccc----CCCC--CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 54 VSLGLWDTAGQEDYDRL----RPLS--YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
+.+.+.|++|...+... ...+ ....+.+++|+|+....+... +...+.... + ..-+|.||.|....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~----~~~~~~~~~-~-~~~viltk~D~~~~ 154 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVN----QAKAFNEAL-G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHH----HHHHHHhhC-C-CCEEEEECCcCCCC
Confidence 44668999996422110 1111 124899999999865433221 222222221 2 35677799997654
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.2e-05 Score=51.59 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=31.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~ 61 (195)
+|++.|.+|+||||+++++...-- .... .....++....-++..+-+.+.|+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~-~~~~-~v~Gf~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELK-KKGL-PVGGFYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHH-HTCG-GEEEEEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhh-ccCC-ccceEEeecccCCCceEEEEEEEC
Confidence 689999999999999999875311 0001 122333344445566666667777
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=5e-05 Score=51.68 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=25.4
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
|..+...-+.|+|.+|+|||||+.++...
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence 67777778999999999999999999864
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.66 E-value=3.8e-05 Score=52.24 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+|+|+|++|||||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998864
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.2e-05 Score=53.48 Aligned_cols=28 Identities=21% Similarity=0.168 Sum_probs=25.7
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|.+++..-|+|+|++|+|||||++.+.+
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 7788889999999999999999999875
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0005 Score=54.32 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
--++++|+.|+||||.+..|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 4689999999999999988875
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00025 Score=54.14 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-.++++|+.|+||||++..+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999988764
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=5.2e-05 Score=51.83 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+|+|+|.+|+|||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998753
|
|
| >KOG2485|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.9e-05 Score=54.89 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++.|+|-||+|||||+|.+...
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~ 166 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNV 166 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHH
Confidence 4689999999999999999987654
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=5.2e-05 Score=52.06 Aligned_cols=23 Identities=13% Similarity=0.374 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.||+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00037 Score=45.93 Aligned_cols=106 Identities=12% Similarity=0.076 Sum_probs=59.0
Q ss_pred EEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCCh
Q psy10443 11 VVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSP 90 (195)
Q Consensus 11 v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 90 (195)
.-|.+|+|||++...+...-. .....+..-... .......+.+.++|+|+... ......+..+|.++++.+.+ .
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D--~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~ 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALA-KLGKRVLLLDAD--LGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-P 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECC--CCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-h
Confidence 446689999998766544211 110011100000 00001116677999987432 22345788899999999976 4
Q ss_pred hcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 91 SSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 91 ~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
.++..... .+..+.......++.+++|+.+..
T Consensus 79 ~s~~~~~~-~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 79 TSITDAYA-LIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred hHHHHHHH-HHHHHHHhcCCCCEEEEEeCCCCH
Confidence 44444332 444444444456788999999743
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00034 Score=57.96 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
--|+++|+.||||||.+..|...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 46899999999999999888753
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.56 E-value=6.3e-05 Score=49.63 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=18.6
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q psy10443 9 CVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~ 28 (195)
|+++|.|||||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
|
... |
| >KOG2484|consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=9.5e-05 Score=55.88 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=36.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~ 64 (195)
+..+.+.|+|-|++||||+||+|..+.. +....|+...... .+.. +..++ |.|.||-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smq-eV~L-dk~i~--llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQ-EVKL-DKKIR--LLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhh-heec-cCCce--eccCCce
Confidence 4578999999999999999999998754 2222222221111 1222 33444 9999993
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00072 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.=.|+++|+.||||||-+-.|...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 446899999999999988777654
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00063 Score=41.39 Aligned_cols=69 Identities=23% Similarity=0.204 Sum_probs=43.3
Q ss_pred EEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc-CCCCCCCccEEEEEEeC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL-RPLSYPQTDVFLICYSV 87 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~ 87 (195)
+++.|.+|+||||+...+...-.... .....++ .+.++|+++....... .......+|.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g---------~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG---------KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---------CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 67889999999999988775321111 1111222 4559999876432221 14566688999999887
Q ss_pred CCh
Q psy10443 88 VSP 90 (195)
Q Consensus 88 ~~~ 90 (195)
...
T Consensus 69 ~~~ 71 (99)
T cd01983 69 EAL 71 (99)
T ss_pred chh
Confidence 643
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=6.7e-05 Score=50.81 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=17.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00053 Score=53.59 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++|+|++||||||++..|..
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999998876643
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00012 Score=40.82 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
..+|.|+.|+|||||+..+.--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999887653
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00011 Score=52.10 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
+|+|+|.|||||||+.+.|..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998865
|
|
| >KOG0780|consensus | Back alignment and domain information |
|---|
Probab=97.48 E-value=5.8e-05 Score=56.90 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=20.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++--|.++|..|+||||.+..|..
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~ 123 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAY 123 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHH
Confidence 3566789999999999999977654
|
|
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00018 Score=49.86 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=21.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
++.=|+++|++|||||||+++|...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3455899999999999999999875
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00011 Score=42.12 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=19.0
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|++.|.+|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998864
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PTZ00088 adenylate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00014 Score=51.99 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=24.4
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
|--+.+++|+|+|+|||||||+...|...
T Consensus 1 ~~~~~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 1 MKLKGPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33456789999999999999999998763
|
|
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00029 Score=49.70 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
++.-|+|+|++|+|||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4567889999999999999999754
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00089 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++-.|+++|+.|+||||.+..+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999987754
|
|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00017 Score=49.63 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=22.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+.+-|+|.|.+||||||+.++|...
T Consensus 1 ~~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhh
Confidence 34678899999999999999999863
|
|
| >PRK14527 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00019 Score=49.97 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=24.6
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|+.+++.-|+++|+||+||||+...+..
T Consensus 1 ~~~~~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 1 MTQTKNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 6667778899999999999999998874
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00067 Score=44.44 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.-.+++.|++|+|||++++.+....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4468999999999999999998753
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00026 Score=48.26 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
+..=+++.|++|+|||||++.|....
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 44568899999999999999999764
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00017 Score=51.63 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
..+++++|+|.+|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999999888753
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00017 Score=49.80 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998864
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0022 Score=48.81 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=18.5
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 577899999999999999864
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00025 Score=49.57 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
=.++++|++|||||||++.+.+-+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCc
Confidence 368999999999999999887654
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00017 Score=55.37 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++..|+++|..|+||||.+..|..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~ 122 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAK 122 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHH
Confidence 4678999999999999999977654
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00019 Score=46.28 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=19.1
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998864
|
... |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0002 Score=50.73 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|||||||++.+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999998764
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00021 Score=46.29 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999864
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00024 Score=46.49 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=.++|+|+.|+|||||++.+.+.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 36899999999999999988864
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00021 Score=49.19 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+|+++|.|||||||+.++|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00025 Score=46.64 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00074 Score=49.50 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-+++++|.+|+||||++..+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 35899999999999999987654
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00025 Score=50.60 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=|+++|++|+|||||++.+.+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999998874
|
|
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00024 Score=46.86 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.|.|+|.+|+|||||+..|.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998763
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00032 Score=45.64 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF 31 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~ 31 (195)
-.++++|++|+|||+++..+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4789999999999999999987543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00031 Score=48.66 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999764
|
|
| >KOG2423|consensus | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0022 Score=48.93 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=63.0
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
+...|++|-|+|+.||-.-.. .+....++...+...++.|+||+|+...- +....+..+++.++-
T Consensus 211 iDSSDVvvqVlDARDPmGTrc--~~ve~ylkke~phKHli~vLNKvDLVPtw-------------vt~~Wv~~lSkeyPT 275 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIYVLNKVDLVPTW-------------VTAKWVRHLSKEYPT 275 (572)
T ss_pred hcccceeEEeeeccCCccccc--HHHHHHHhhcCCcceeEEEeeccccccHH-------------HHHHHHHHHhhhCcc
Confidence 446899999999998854322 23556777888889999999999998864 455566777777773
Q ss_pred ceeEEeccCCcccHHHHHHHHHH
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
+ -|..|..+..|-..+++.|.+
T Consensus 276 i-AfHAsi~nsfGKgalI~llRQ 297 (572)
T KOG2423|consen 276 I-AFHASINNSFGKGALIQLLRQ 297 (572)
T ss_pred e-eeehhhcCccchhHHHHHHHH
Confidence 3 466777777776666666555
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0003 Score=48.41 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00033 Score=48.59 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+|+++|+|||||||+..+|...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999763
|
|
| >PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A [] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.032 Score=37.79 Aligned_cols=138 Identities=11% Similarity=0.086 Sum_probs=88.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
.-.|+++|..+.++..|...+....- + +. +++.-...-+-. ......=...|.++|++
T Consensus 15 ~atiLLVg~e~~~~~~LA~a~l~~~~------~----~~-----------l~Vh~a~sLPLp-~e~~~lRprIDlIVFvi 72 (176)
T PF11111_consen 15 TATILLVGTEEALLQQLAEAMLEEDK------E----FK-----------LKVHLAKSLPLP-SENNNLRPRIDLIVFVI 72 (176)
T ss_pred eeEEEEecccHHHHHHHHHHHHhhcc------c----ee-----------EEEEEeccCCCc-ccccCCCceeEEEEEEE
Confidence 45899999999999999999885211 0 11 111111100000 00111123579999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|.+..-|++.++. =+..+...+.-=.++++++.....+. -.+...++.+++..+. +|++.+.-...
T Consensus 73 nl~sk~SL~~ve~-SL~~vd~~fflGKVCfl~t~a~~~~~------------~sv~~~~V~kla~~y~-~plL~~~le~~ 138 (176)
T PF11111_consen 73 NLHSKYSLQSVEA-SLSHVDPSFFLGKVCFLATNAGRESH------------CSVHPNEVRKLAATYN-SPLLFADLENE 138 (176)
T ss_pred ecCCcccHHHHHH-HHhhCChhhhccceEEEEcCCCcccc------------cccCHHHHHHHHHHhC-CCEEEeecccc
Confidence 9999999998875 34444433222345666666655443 2377788999999999 78999888888
Q ss_pred ccHHHHHHHHHHHH
Q psy10443 166 RGLRQVFDEAVRAV 179 (195)
Q Consensus 166 ~~v~~~~~~l~~~~ 179 (195)
++...+-+.|.+.+
T Consensus 139 ~~~~~lAqRLL~~l 152 (176)
T PF11111_consen 139 EGRTSLAQRLLRML 152 (176)
T ss_pred hHHHHHHHHHHHHH
Confidence 77777766666654
|
CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival []. |
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00035 Score=47.63 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
+|+|+|.+|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998775
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00036 Score=45.89 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.|+++|++|+|||++++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988763
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PLN02674 adenylate kinase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00041 Score=50.01 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=22.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+...+|+++|+|||||+|+..+|...
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~ 54 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDE 54 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHH
Confidence 44688999999999999999998763
|
|
| >PLN02200 adenylate kinase family protein | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00053 Score=49.31 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++.|+|+|.|||||||+..+|..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998875
|
|
| >PTZ00301 uridine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00045 Score=48.79 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=21.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|+.+=|.|.|.+|||||||.+.+..
T Consensus 1 ~~~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 1 MPCTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CCCEEEEEECCCcCCHHHHHHHHHH
Confidence 4678899999999999999987653
|
|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00035 Score=48.31 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
-.|+++|.+||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999974
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00038 Score=47.90 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-|+++|++|||||||++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999874
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00038 Score=46.88 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+|+|.|-||+||||+.++|..
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~~ 22 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLRE 22 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHHH
Confidence 3799999999999999999983
|
|
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00048 Score=47.07 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.....|+|.|.+||||||+.+.|...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56788999999999999999999753
|
|
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00043 Score=47.83 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.+|+++|+|||||||+.+.+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988653
|
|
| >KOG2423|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00069 Score=51.50 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=51.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeec-cceeEEeCCEEEEEEEEeCCCCcccc--ccCCCCCCCcc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDGIPVSLGLWDTAGQEDYD--RLRPLSYPQTD 79 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~~~~~--~~~~~~~~~~d 79 (195)
.++.+-|.++|-||+||||+||.|.....-. -.|..+.. ...-++ ..-++-++|+||--... +.....+ -
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCk-vAPIpGETKVWQYIt---LmkrIfLIDcPGvVyps~dset~ivL---k 376 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCK-VAPIPGETKVWQYIT---LMKRIFLIDCPGVVYPSSDSETDIVL---K 376 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhccccc-ccCCCCcchHHHHHH---HHhceeEecCCCccCCCCCchHHHHh---h
Confidence 3678999999999999999999998765421 12222221 111011 11245599999953222 2222233 4
Q ss_pred EEEEEEeCCChhcHH
Q psy10443 80 VFLICYSVVSPSSFD 94 (195)
Q Consensus 80 ~~i~v~d~~~~~s~~ 94 (195)
+++=|=++++|+.+-
T Consensus 377 GvVRVenv~~pe~yi 391 (572)
T KOG2423|consen 377 GVVRVENVKNPEDYI 391 (572)
T ss_pred ceeeeeecCCHHHHH
Confidence 677788888876654
|
|
| >KOG3347|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00033 Score=45.96 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=22.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
....||+|.|-||+||||+..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 3467999999999999999999875
|
|
| >PRK05541 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00052 Score=47.09 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=22.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++.-|++.|.+|+||||+.+.+...
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 56789999999999999999888753
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00059 Score=52.20 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.++++|.+|+|||||++.+.+.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47899999999999999999974
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0016 Score=48.58 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.+++-|+++|-.|+||||-+..|...
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~ 162 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKY 162 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHH
Confidence 46889999999999999999877653
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00045 Score=43.11 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCchHHHHHHhh
Q psy10443 7 IKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~ 27 (195)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 468999999999999999876
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00045 Score=47.28 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
+|+++|.+||||||+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998865
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00059 Score=51.43 Aligned_cols=94 Identities=21% Similarity=0.228 Sum_probs=60.5
Q ss_pred eCCCCc-cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCC
Q psy10443 60 DTAGQE-DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLS 138 (195)
Q Consensus 60 D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~ 138 (195)
+.||+. .+.......+...|+++-|+|+-+|.+-.. ..+.....+.|.++|+||+|+....
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~------~~l~~~v~~k~~i~vlNK~DL~~~~------------ 77 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN------PELERIVKEKPKLLVLNKADLAPKE------------ 77 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC------ccHHHHHccCCcEEEEehhhcCCHH------------
Confidence 446653 444556677889999999999999876332 2333333356669999999998864
Q ss_pred CccHHHHHHHHHHcCCceeEEeccCCcccHHHHHH
Q psy10443 139 PVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173 (195)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 173 (195)
...+..+.|.+..+ ...+.++++.+.+...+..
T Consensus 78 -~~~~W~~~~~~~~~-~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 78 -VTKKWKKYFKKEEG-IKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred -HHHHHHHHHHhcCC-CccEEEEeecccCccchHH
Confidence 22333444444443 4567777777776666653
|
|
| >PRK05057 aroK shikimate kinase I; Reviewed | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00053 Score=46.92 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-+|+++|.+|+||||+.+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999998753
|
|
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0012 Score=43.03 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
--|++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999875
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00042 Score=48.21 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+|+|+|.|||||||+...|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
|
This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00046 Score=48.30 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=18.9
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|.|.|++|||||||.+.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998763
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00047 Score=47.57 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=18.9
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+++|.|||||||+..+|...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998763
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00057 Score=46.63 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.++|+|++|+|||||+|-+.+=.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhcc
Confidence 78999999999999999988643
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0024 Score=39.64 Aligned_cols=78 Identities=18% Similarity=0.173 Sum_probs=46.1
Q ss_pred EEEEcC-CCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 9 CVVVGD-GTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 9 i~v~G~-~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
|+|.|. +|+||||+...+...-. ....++.. +..+ ..+.+.++|+|+..... ....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~-~~~~~vl~------~d~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA-RRGKRVLL------IDLD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH-hCCCcEEE------EeCC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence 567775 68999999877654211 11111111 1111 11567799998864322 23567789999999987
Q ss_pred CChhcHHHHH
Q psy10443 88 VSPSSFDNVT 97 (195)
Q Consensus 88 ~~~~s~~~~~ 97 (195)
+ ..++....
T Consensus 72 ~-~~s~~~~~ 80 (104)
T cd02042 72 S-PLDLDGLE 80 (104)
T ss_pred C-HHHHHHHH
Confidence 4 44555554
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00048 Score=44.62 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
--++|.|++|+|||++++++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHH
Confidence 34789999999999999999874
|
|
| >PRK15453 phosphoribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00073 Score=49.51 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=22.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.++.-|+|.|.+||||||+.+.+..
T Consensus 2 s~k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 2 SAKHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45667899999999999999998763
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00071 Score=47.57 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+.--|+++|++|||||||++.+.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4456899999999999999998874
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00056 Score=48.48 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999999886
|
|
| >PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0021 Score=41.25 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
--|++-|+=|+|||||++.+...
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999998874
|
They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A. |
| >PRK02496 adk adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00069 Score=46.84 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+|+|+|+||+||||+.+.+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
|
|
| >TIGR01351 adk adenylate kinases | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00052 Score=48.53 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
+|+|+|+|||||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
|
Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 195 | ||||
| 1i4d_D | 192 | Crystal Structure Analysis Of Rac1-Gdp Complexed Wi | 2e-83 | ||
| 1i4t_D | 192 | Crystal Structure Analysis Of Rac1-Gmppnp In Comple | 1e-82 | ||
| 1e96_A | 192 | Structure Of The RacP67PHOX COMPLEX Length = 192 | 1e-82 | ||
| 1hh4_A | 192 | Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ | 2e-82 | ||
| 2vrw_A | 184 | Critical Structural Role For The Ph And C1 Domains | 4e-80 | ||
| 1ds6_A | 192 | Crystal Structure Of A Rac-Rhogdi Complex Length = | 8e-80 | ||
| 1mh1_A | 186 | Small G-Protein Length = 186 | 4e-79 | ||
| 2h7v_A | 188 | Co-crystal Structure Of Ypka-rac1 Length = 188 | 4e-79 | ||
| 1g4u_R | 184 | Crystal Structure Of The Salmonella Tyrosine Phosph | 4e-79 | ||
| 3th5_A | 204 | Crystal Structure Of Wild-Type Rac1 Length = 204 | 9e-79 | ||
| 3sua_A | 184 | Crystal Structure Of The Intracellular Domain Of Pl | 2e-78 | ||
| 2yin_C | 196 | Structure Of The Complex Between Dock2 And Rac1. Le | 2e-78 | ||
| 2fju_A | 178 | Activated Rac1 Bound To Its Effector Phospholipase | 4e-78 | ||
| 3sbd_A | 187 | Crystal Structure Of Rac1 P29s Mutant Length = 187 | 4e-78 | ||
| 4gzm_A | 204 | Crystal Structure Of Rac1 F28l Mutant Length = 204 | 4e-78 | ||
| 1foe_B | 177 | Crystal Structure Of Rac1 In Complex With The Guani | 5e-78 | ||
| 3b13_B | 184 | Crystal Structure Of The Dhr-2 Domain Of Dock2 In C | 6e-78 | ||
| 4gzl_A | 204 | Crystal Structure Of Rac1 Q61l Mutant Length = 204 | 6e-78 | ||
| 1he1_C | 176 | Crystal Structure Of The Complex Between The Gap Do | 2e-77 | ||
| 3ryt_C | 180 | The Plexin A1 Intracellular Region In Complex With | 4e-77 | ||
| 2wkq_A | 332 | Structure Of A Photoactivatable Rac1 Containing The | 5e-77 | ||
| 2wkr_A | 332 | Structure Of A Photoactivatable Rac1 Containing The | 5e-77 | ||
| 2wkp_A | 332 | Structure Of A Photoactivatable Rac1 Containing Lov | 6e-77 | ||
| 2g0n_A | 179 | The Crystal Structure Of The Human Rac3 In Complex | 1e-76 | ||
| 2ic5_A | 180 | Crystal Structure Of Human Rac3 Grown In The Presen | 2e-76 | ||
| 2c2h_A | 192 | Crystal Structure Of The Human Rac3 In Complex With | 2e-76 | ||
| 1ryf_A | 203 | Alternative Splicing Of Rac1 Generates Rac1b, A Sel | 6e-76 | ||
| 2w2t_A | 185 | Rac2 (G12v) In Complex With Gdp Length = 185 | 3e-75 | ||
| 2w2v_A | 184 | Rac2 (G12v) In Complex With Gtpgs Length = 184 | 3e-75 | ||
| 2odb_A | 192 | The Crystal Structure Of Human Cdc42 In Complex Wit | 6e-72 | ||
| 2dfk_B | 194 | Crystal Structure Of The Cdc42-Collybistin Ii Compl | 6e-72 | ||
| 1grn_A | 191 | Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. | 9e-72 | ||
| 1an0_A | 190 | Cdc42hs-Gdp Complex Length = 190 | 2e-71 | ||
| 2qrz_A | 189 | Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is | 3e-71 | ||
| 1aje_A | 194 | Cdc42 From Human, Nmr, 20 Structures Length = 194 | 4e-71 | ||
| 2wm9_B | 190 | Structure Of The Complex Between Dock9 And Cdc42. L | 6e-71 | ||
| 1nf3_A | 195 | Structure Of Cdc42 In A Complex With The Gtpase-Bin | 7e-71 | ||
| 1a4r_B | 191 | G12v Mutant Of Human Placental Cdc42 Gtpase In The | 8e-71 | ||
| 1kz7_B | 188 | Crystal Structure Of The DhPH FRAGMENT OF MURINE DB | 1e-70 | ||
| 1doa_A | 191 | Structure Of The Rho Family Gtp-Binding Protein Cdc | 1e-70 | ||
| 3vhl_B | 195 | Crystal Structure Of The Dhr-2 Domain Of Dock8 In C | 3e-70 | ||
| 4did_A | 193 | Crystal Structure Of Salmonella Effector N-Terminal | 1e-69 | ||
| 1cee_A | 179 | Solution Structure Of Cdc42 In Complex With The Gtp | 1e-69 | ||
| 3eg5_A | 178 | Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W | 3e-69 | ||
| 1gzs_A | 180 | Crystal Structure Of The Complex Between The Gef Do | 4e-69 | ||
| 1am4_D | 177 | Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S | 4e-69 | ||
| 1ees_A | 178 | Solution Structure Of Cdc42hs Complexed With A Pept | 5e-69 | ||
| 1cf4_A | 184 | Cdc42ACK GTPASE-Binding Domain Complex Length = 184 | 6e-69 | ||
| 3gcg_A | 182 | Crystal Structure Of Map And Cdc42 Complex Length = | 7e-69 | ||
| 2kb0_A | 178 | Cdc42(T35a) Length = 178 | 2e-68 | ||
| 3qbv_A | 178 | Structure Of Designed Orthogonal Interaction Betwee | 2e-68 | ||
| 2ase_A | 178 | Nmr Structure Of The F28l Mutant Of Cdc42hs Length | 3e-68 | ||
| 2atx_A | 194 | Crystal Structure Of The Tc10 Gppnhp Complex Length | 7e-64 | ||
| 2wbl_C | 180 | Three-Dimensional Structure Of A Binary Rop-Prone C | 8e-61 | ||
| 3tvd_A | 193 | Crystal Structure Of Mouse Rhoa-Gtp Complex Length | 8e-59 | ||
| 2nty_C | 180 | Rop4-Gdp-Prone8 Length = 180 | 8e-59 | ||
| 1z2c_A | 193 | Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With | 9e-59 | ||
| 1lb1_B | 192 | Crystal Structure Of The Dbl And Pleckstrin Homolog | 1e-58 | ||
| 1x86_B | 196 | Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A | 1e-58 | ||
| 4f38_A | 195 | Crystal Structure Of Geranylgeranylated Rhoa In Com | 1e-58 | ||
| 3bwd_D | 182 | Crystal Structure Of The Plant Rho Protein Rop5 Len | 2e-58 | ||
| 3kz1_E | 182 | Crystal Structure Of The Complex Of Pdz-Rhogef DhPH | 2e-58 | ||
| 1s1c_A | 183 | Crystal Structure Of The Complex Between The Human | 3e-58 | ||
| 3lw8_A | 185 | Shigella Ipgb2 In Complex With Human Rhoa, Gdp And | 3e-58 | ||
| 2q3h_A | 201 | The Crystal Structure Of Rhoua In The Gdp-bound Sta | 4e-58 | ||
| 1ow3_B | 193 | Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With | 4e-58 | ||
| 1cc0_A | 190 | Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le | 4e-58 | ||
| 2gcn_A | 201 | Crystal Structure Of The Human Rhoc-Gdp Complex Len | 6e-58 | ||
| 3msx_A | 180 | Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With | 9e-58 | ||
| 1xcg_B | 178 | Crystal Structure Of Human Rhoa In Complex With DhP | 1e-57 | ||
| 1tx4_B | 177 | RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177 | 1e-57 | ||
| 1cxz_A | 182 | Crystal Structure Of Human Rhoa Complexed With The | 3e-57 | ||
| 1kmq_A | 184 | Crystal Structure Of A Constitutively Activated Rho | 3e-57 | ||
| 2gco_A | 201 | Crystal Structure Of The Human Rhoc-gppnhp Complex | 8e-57 | ||
| 1dpf_A | 180 | Crystal Structure Of A Mg-Free Form Of Rhoa Complex | 2e-56 | ||
| 2fv8_A | 207 | The Crystal Structure Of Rhob In The Gdp-Bound Stat | 1e-55 | ||
| 2j0v_A | 212 | The Crystal Structure Of Arabidopsis Thaliana Rac7- | 1e-55 | ||
| 3a58_B | 188 | Crystal Structure Of Sec3p - Rho1p Complex From Sac | 2e-51 | ||
| 2j1l_A | 214 | Crystal Structure Of Human Rho-Related Gtp-Binding | 3e-49 | ||
| 3ref_B | 194 | Crystal Structure Of Ehrho1 Bound To Gdp And Magnes | 5e-43 | ||
| 4dvg_A | 188 | Crystal Structure Of E. Histolytica Formin1 Bound T | 6e-42 | ||
| 2v55_B | 200 | Mechanism Of Multi-site Phosphorylation From A Rock | 2e-41 | ||
| 1m7b_A | 184 | Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI | 2e-41 | ||
| 1gwn_A | 205 | The Crystal Structure Of The Core Domain Of RhoeRND | 3e-41 | ||
| 2rex_B | 197 | Crystal Structure Of The Effector Domain Of Plxnb1 | 5e-34 | ||
| 2cls_A | 198 | The Crystal Structure Of The Human Rnd1 Gtpase In T | 5e-34 | ||
| 3q3j_B | 214 | Crystal Structure Of Plexin A2 Rbd In Complex With | 5e-34 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 4e-21 | ||
| 3brw_D | 167 | Structure Of The Rap-Rapgap Complex Length = 167 | 3e-19 | ||
| 1gua_A | 167 | Human Rap1a, Residues 1-167, Double Mutant (E30d,K3 | 5e-19 | ||
| 1c1y_A | 167 | Crystal Structure Of Rap.Gmppnp In Complex With The | 2e-18 | ||
| 4dxa_A | 169 | Co-Crystal Structure Of Rap1 In Complex With Krit1 | 3e-18 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 2e-17 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 2e-17 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 2e-17 | ||
| 1ek0_A | 170 | Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17 | 3e-17 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 3e-17 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 4e-17 | ||
| 2y8e_A | 179 | Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo | 4e-17 | ||
| 2fe4_A | 171 | The Crystal Structure Of Human Neuronal Rab6b In It | 5e-17 | ||
| 1wms_A | 177 | High Resolution Crystal Structure Of Human Rab9 Gtp | 6e-17 | ||
| 2ocb_A | 180 | Crystal Structure Of Human Rab9b In Complex With A | 1e-16 | ||
| 1z0a_A | 174 | Gdp-Bound Rab2a Gtpase Length = 174 | 2e-16 | ||
| 2a5j_A | 191 | Crystal Structure Of Human Rab2b Length = 191 | 2e-16 | ||
| 1s8f_A | 177 | Crystal Structure Of Rab9 Complexed To Gdp Reveals | 2e-16 | ||
| 2ke5_A | 174 | Solution Structure And Dynamics Of The Small Gtpase | 2e-16 | ||
| 1yzl_A | 179 | Gppnhp-Bound Rab9 Gtpase Length = 179 | 2e-16 | ||
| 2kwi_A | 178 | Ralb-Rlip76 (Ralbp1) Complex Length = 178 | 2e-16 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 2e-16 | ||
| 1ky2_A | 182 | Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | 2e-16 | ||
| 1u8y_A | 168 | Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal | 3e-16 | ||
| 3cwz_A | 188 | Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | 3e-16 | ||
| 2a78_A | 187 | Crystal Structure Of The C3bot-Rala Complex Reveals | 3e-16 | ||
| 1uad_A | 175 | Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi | 3e-16 | ||
| 2bov_A | 206 | Molecular Recognition Of An Adp-Ribosylating Clostr | 3e-16 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 3e-16 | ||
| 1agp_A | 166 | Three-Dimensional Structures And Properties Of A Tr | 3e-16 | ||
| 421p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 4e-16 | ||
| 2bku_A | 177 | Kap95p:rangtp Complex Length = 177 | 4e-16 | ||
| 3bbp_A | 211 | Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = | 5e-16 | ||
| 1clu_A | 166 | H-Ras Complexed With Diaminobenzophenone-Beta,Gamma | 7e-16 | ||
| 1byu_A | 216 | Canine Gdp-Ran Length = 216 | 8e-16 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 8e-16 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 9e-16 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 1e-15 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 1e-15 | ||
| 1jah_A | 166 | H-Ras P21 Protein Mutant G12p, Complexed With Guano | 1e-15 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 1e-15 | ||
| 2gil_A | 162 | Structure Of The Extremely Slow Gtpase Rab6a In The | 1e-15 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 1e-15 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 1e-15 | ||
| 1yzu_A | 170 | Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng | 1e-15 | ||
| 2ery_A | 172 | The Crystal Structure Of The Ras Related Protein Rr | 2e-15 | ||
| 1yzt_A | 184 | Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng | 2e-15 | ||
| 1yzq_A | 170 | Gppnhp-Bound Rab6 Gtpase Length = 170 | 2e-15 | ||
| 4dkx_A | 216 | Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | 2e-15 | ||
| 1qg4_A | 216 | Canine Gdp-Ran F72y Mutant Length = 216 | 2e-15 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 2e-15 | ||
| 1wa5_A | 176 | Crystal Structure Of The Exportin Cse1p Complexed W | 3e-15 | ||
| 1z22_A | 168 | Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac | 3e-15 | ||
| 1zc3_A | 175 | Crystal Structure Of The Ral-Binding Domain Of Exo8 | 3e-15 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 3e-15 | ||
| 2atv_A | 196 | The Crystal Structure Of Human Rerg In The Gdp Boun | 3e-15 | ||
| 2f9l_A | 199 | 3d Structure Of Inactive Human Rab11b Gtpase Length | 4e-15 | ||
| 3ea5_A | 216 | Kap95p Binding Induces The Switch Loops Of Rangdp T | 5e-15 | ||
| 1a2k_C | 216 | Gdpran-Ntf2 Complex Length = 216 | 5e-15 | ||
| 1rrp_A | 204 | Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = | 6e-15 | ||
| 4epr_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 6e-15 | ||
| 4dso_A | 189 | Small-Molecule Ligands Bind To A Distinct Pocket In | 6e-15 | ||
| 3gj0_A | 221 | Crystal Structure Of Human Rangdp Length = 221 | 6e-15 | ||
| 1qbk_C | 216 | Structure Of The Karyopherin Beta2-ran Gppnhp Nucle | 7e-15 | ||
| 2iey_A | 195 | Crystal Structure Of Mouse Rab27b Bound To Gdp In H | 7e-15 | ||
| 2if0_A | 200 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 8e-15 | ||
| 3oes_A | 201 | Crystal Structure Of The Small Gtpase Rhebl1 Length | 9e-15 | ||
| 2zet_A | 203 | Crystal Structure Of The Small Gtpase Rab27b Comple | 9e-15 | ||
| 2efc_B | 181 | Ara7-GdpATVPS9A Length = 181 | 1e-14 | ||
| 2iez_A | 220 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 2e-14 | ||
| 1zbd_A | 203 | Structural Basis Of Rab Effector Specificity: Cryst | 2e-14 | ||
| 1qg2_A | 216 | Canine Gdp-Ran R76e Mutant Length = 216 | 2e-14 | ||
| 3nc1_C | 182 | Crystal Structure Of The Crm1-Rangtp Complex Length | 3e-14 | ||
| 3nby_C | 176 | Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea | 3e-14 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 4e-14 | ||
| 3ran_A | 216 | Canine Gdp-Ran Q69l Mutant Length = 216 | 4e-14 | ||
| 1yzk_A | 184 | Gppnhp Bound Rab11 Gtpase Length = 184 | 5e-14 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 6e-14 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 7e-14 | ||
| 3gj4_A | 221 | Crystal Structure Of Human Rangdp-Nup153znf3 Comple | 7e-14 | ||
| 1oiv_A | 191 | X-Ray Structure Of The Small G Protein Rab11a In Co | 8e-14 | ||
| 1vg0_B | 207 | The Crystal Structures Of The Rep-1 Protein In Comp | 8e-14 | ||
| 2fn4_A | 181 | The Crystal Structure Of Human Ras-Related Protein, | 8e-14 | ||
| 1vg1_A | 185 | Gdp-bound Rab7 Length = 185 | 9e-14 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 1e-13 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 2e-13 | ||
| 2ew1_A | 201 | Crystal Structure Of Rab30 In Complex With A Gtp An | 2e-13 | ||
| 3icq_B | 171 | Karyopherin Nuclear State Length = 171 | 2e-13 | ||
| 2x19_A | 172 | Crystal Structure Of Importin13 - Rangtp Complex Le | 2e-13 | ||
| 3law_A | 207 | Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2 | 2e-13 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 2e-13 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 3e-13 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 3e-13 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 3e-13 | ||
| 2hv8_A | 172 | Crystal Structure Of Gtp-Bound Rab11 In Complex Wit | 4e-13 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 4e-13 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 4e-13 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 4e-13 | ||
| 6q21_A | 171 | Molecular Switch For Signal Transduction: Structura | 5e-13 | ||
| 2q21_A | 171 | Crystal Structures At 2.2 Angstroms Resolution Of T | 5e-13 | ||
| 2c5l_A | 173 | Structure Of Plc Epsilon Ras Association Domain Wit | 5e-13 | ||
| 1wq1_R | 166 | Ras-Rasgap Complex Length = 166 | 5e-13 | ||
| 1rvd_A | 166 | H-Ras Complexed With Diaminobenzophenone-Beta,Gamma | 5e-13 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 5e-13 | ||
| 3m1i_A | 219 | Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex | 5e-13 | ||
| 3v4f_A | 166 | H-Ras Peg 400CACL2, ORDERED OFF Length = 166 | 6e-13 | ||
| 4efm_A | 171 | Crystal Structure Of H-Ras G12v In Complex With Gpp | 6e-13 | ||
| 4efl_A | 171 | Crystal Structure Of H-Ras Wt In Complex With Gppnh | 6e-13 | ||
| 2cld_X | 166 | Crystal Structure Analysis Of A Fluorescent Form Of | 6e-13 | ||
| 4q21_A | 189 | Molecular Switch For Signal Transduction: Structura | 6e-13 | ||
| 1oiw_A | 191 | X-ray Structure Of The Small G Protein Rab11a In Co | 7e-13 | ||
| 3lo5_A | 166 | Crystal Structure Of The Dominant Negative S17n Mut | 7e-13 | ||
| 1t91_A | 207 | Crystal Structure Of Human Small Gtpase Rab7(Gtp) L | 8e-13 | ||
| 3i3s_R | 166 | Crystal Structure Of H-Ras With Thr50 Replaced By I | 8e-13 | ||
| 2erx_A | 172 | Crystal Structure Of Diras2 In Complex With Gdp And | 8e-13 | ||
| 2gzd_A | 173 | Crystal Structure Of Rab11 In Complex With Rab11-Fi | 9e-13 | ||
| 2d7c_A | 167 | Crystal Structure Of Human Rab11 In Complex With Fi | 1e-12 | ||
| 2quz_A | 166 | Crystal Structure Of The Activating H-Rask117r Muta | 1e-12 | ||
| 2x1v_A | 166 | Crystal Structure Of The Activating H-Ras I163f Mut | 1e-12 | ||
| 1iaq_A | 166 | C-H-Ras P21 Protein Mutant With Thr 35 Replaced By | 1e-12 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 1e-12 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 1e-12 | ||
| 3kkm_A | 172 | Crystal Structure Of H-Ras T35s In Complex With Gpp | 1e-12 | ||
| 3k9n_A | 166 | Allosteric Modulation Of H-Ras Gtpase Length = 166 | 1e-12 | ||
| 3bc1_A | 195 | Crystal Structure Of The Complex Rab27a-slp2a Lengt | 2e-12 | ||
| 221p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 2e-12 | ||
| 1z0f_A | 179 | Gdp-Bound Rab14 Gtpase Length = 179 | 2e-12 | ||
| 1lf0_A | 166 | Crystal Structure Of Rasa59g In The Gtp-Bound Form | 2e-12 | ||
| 1lfd_B | 167 | Crystal Structure Of The Active Ras Protein Complex | 2e-12 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 2e-12 | ||
| 521p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 2e-12 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 2e-12 | ||
| 2rgb_A | 166 | Crystal Structure Of H-Rasq61k-Gppnhp Length = 166 | 2e-12 | ||
| 621p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 2e-12 | ||
| 3ddc_A | 166 | Crystal Structure Of Nore1a In Complex With Ras Len | 2e-12 | ||
| 1xcm_A | 167 | Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu | 2e-12 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 2e-12 | ||
| 1xj0_A | 166 | Crystal Structure Of The Gdp-Bound Form Of The Rasg | 2e-12 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 2e-12 | ||
| 3kko_A | 183 | Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX | 3e-12 | ||
| 3cpj_B | 223 | Crystal Structure Of Ypt31 In Complex With Yeast Ra | 3e-12 | ||
| 1zw6_A | 166 | Crystal Structure Of The Gtp-Bound Form Of Rasq61g | 3e-12 | ||
| 1zvq_A | 166 | Structure Of The Q61g Mutant Of Ras In The Gdp-Boun | 4e-12 | ||
| 1nvv_Q | 166 | Structural Evidence For Feedback Activation By Rasg | 5e-12 | ||
| 4efn_A | 171 | Crystal Structure Of H-Ras Q61l In Complex With Gpp | 5e-12 | ||
| 721p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 5e-12 | ||
| 2rgc_A | 166 | Crystal Structure Of H-Rasq61v-Gppnhp Length = 166 | 5e-12 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 6e-12 | ||
| 2rga_A | 166 | Crystal Structure Of H-Rasq61i-Gppnhp Length = 166 | 6e-12 | ||
| 1yvd_A | 169 | Gppnhp-Bound Rab22 Gtpase Length = 169 | 6e-12 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 6e-12 | ||
| 2cl0_X | 166 | Crystal Structure Analysis Of A Fluorescent Form Of | 9e-12 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 9e-12 | ||
| 3pir_A | 183 | Crystal Structure Of M-Rasd41e In Complex With Gppn | 9e-12 | ||
| 4epx_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 1e-11 | ||
| 4ept_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 1e-11 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 1e-11 | ||
| 4drz_A | 196 | Crystal Structure Of Human Rab14 Length = 196 | 1e-11 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 1e-11 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 1e-11 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 1e-11 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 1e-11 | ||
| 3rwm_B | 185 | Crystal Structure Of Ypt32 In Complex With Gppnhp L | 1e-11 | ||
| 3kkp_A | 183 | Crystal Structure Of M-Ras P40d In Complex With Gpp | 1e-11 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 1e-11 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 1e-11 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 2e-11 | ||
| 1z0j_A | 170 | Structure Of Gtp-Bound Rab22q64l Gtpase In Complex | 2e-11 | ||
| 3con_A | 190 | Crystal Structure Of The Human Nras Gtpase Bound Wi | 2e-11 | ||
| 1x1r_A | 178 | Crystal Structure Of M-Ras In Complex With Gdp Leng | 3e-11 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 3e-11 | ||
| 3gft_A | 187 | Human K-Ras In Complex With A Gtp Analogue Length = | 3e-11 | ||
| 1xtq_A | 177 | Structure Of Small Gtpase Human Rheb In Complex Wit | 4e-11 | ||
| 2l0x_A | 169 | Solution Structure Of The 21 Kda Gtpase Rheb Bound | 5e-11 | ||
| 2bmd_A | 186 | High Resolution Structure Of Gdp-Bound Human Rab4a | 6e-11 | ||
| 3t5g_A | 181 | Structure Of Fully Modified Farnesylated Rheb In Co | 7e-11 | ||
| 3mjh_A | 168 | Crystal Structure Of Human Rab5a In Complex With Th | 9e-11 | ||
| 1z0d_A | 167 | Gdp-bound Rab5c Gtpase Length = 167 | 9e-11 | ||
| 1yu9_A | 175 | Gppnhp-Bound Rab4a Length = 175 | 1e-10 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 2e-10 | ||
| 2o52_A | 200 | Crystal Structure Of Human Rab4b In Complex With Gd | 2e-10 | ||
| 3rap_R | 167 | The Small G Protein Rap2 In A Non Catalytic Complex | 4e-10 | ||
| 2cjw_B | 192 | Crystal Structure Of The Small Gtpase Gem (Gemdndca | 4e-10 | ||
| 2cjw_A | 192 | Crystal Structure Of The Small Gtpase Gem (Gemdndca | 4e-10 | ||
| 3cbq_A | 195 | Crystal Structure Of The Human Rem2 Gtpase With Bou | 6e-10 | ||
| 3sea_A | 167 | Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo | 7e-10 | ||
| 1z0k_A | 172 | Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W | 9e-10 | ||
| 3q85_A | 169 | Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp | 1e-09 | ||
| 2hxs_A | 178 | Crystal Structure Of Rab28a Gtpase In The Inactive | 2e-09 | ||
| 2gf0_A | 199 | The Crystal Structure Of The Human Diras1 Gtpase In | 3e-09 | ||
| 2oil_A | 193 | Crystal Structure Of Human Rab25 In Complex With Gd | 5e-09 | ||
| 3tso_A | 178 | Structure Of The Cancer Associated Rab25 Protein In | 5e-09 | ||
| 3c5c_A | 187 | Crystal Structure Of Human Ras-Like, Family 12 Prot | 7e-09 | ||
| 4aii_A | 180 | Crystal Structure Of The Rat Rem2 Gtpase - G Domain | 1e-08 | ||
| 2ht6_A | 174 | Crystal Structure Of Human Gem G-Domain Bound To Gd | 3e-08 | ||
| 2g3y_A | 211 | Crystal Structure Of The Human Small Gtpase Gem Len | 3e-08 | ||
| 4djt_A | 218 | Crystal Structure Of A Nuclear Gtp-Binding Protein | 5e-07 | ||
| 2nzj_A | 175 | The Crystal Structure Of Rem1 In Complex With Gdp L | 3e-06 | ||
| 2zej_A | 184 | Structure Of The Roc Domain From The Parkinson's Di | 5e-06 | ||
| 3d6t_B | 171 | Structure Of The Roc Domain From The Parkinson's Di | 7e-06 | ||
| 2gjs_A | 176 | The Crystal Structure Of Human Rrad In Complex With | 9e-06 | ||
| 3q72_A | 166 | Crystal Structure Of Rad G-Domain-Gtp Analog Comple | 1e-05 | ||
| 2dpx_A | 174 | Crystal Structure Of Human Rad Gtpase Length = 174 | 2e-05 | ||
| 3clv_A | 208 | Crystal Structure Of Rab5a From Plasmodium Falcipar | 6e-05 | ||
| 2yc2_C | 208 | Intraflagellar Transport Complex 25-27 From Chlamyd | 2e-04 | ||
| 4arz_A | 310 | The Crystal Structure Of Gtr1p-Gtr2p Complexed With | 4e-04 | ||
| 3geh_A | 462 | Crystal Structure Of Mnme From Nostoc In Complex Wi | 6e-04 |
| >pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192 | Back alignment and structure |
|
| >pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192 | Back alignment and structure |
|
| >pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192 | Back alignment and structure |
|
| >pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192 | Back alignment and structure |
|
| >pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184 | Back alignment and structure |
|
| >pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192 | Back alignment and structure |
|
| >pdb|1MH1|A Chain A, Small G-Protein Length = 186 | Back alignment and structure |
|
| >pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188 | Back alignment and structure |
|
| >pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184 | Back alignment and structure |
|
| >pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204 | Back alignment and structure |
|
| >pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184 | Back alignment and structure |
|
| >pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196 | Back alignment and structure |
|
| >pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178 | Back alignment and structure |
|
| >pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187 | Back alignment and structure |
|
| >pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204 | Back alignment and structure |
|
| >pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177 | Back alignment and structure |
|
| >pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184 | Back alignment and structure |
|
| >pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204 | Back alignment and structure |
|
| >pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176 | Back alignment and structure |
|
| >pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180 | Back alignment and structure |
|
| >pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332 | Back alignment and structure |
|
| >pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332 | Back alignment and structure |
|
| >pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332 | Back alignment and structure |
|
| >pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179 | Back alignment and structure |
|
| >pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180 | Back alignment and structure |
|
| >pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203 | Back alignment and structure |
|
| >pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185 | Back alignment and structure |
|
| >pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184 | Back alignment and structure |
|
| >pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192 | Back alignment and structure |
|
| >pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194 | Back alignment and structure |
|
| >pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191 | Back alignment and structure |
|
| >pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190 | Back alignment and structure |
|
| >pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189 | Back alignment and structure |
|
| >pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194 | Back alignment and structure |
|
| >pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190 | Back alignment and structure |
|
| >pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195 | Back alignment and structure |
|
| >pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191 | Back alignment and structure |
|
| >pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188 | Back alignment and structure |
|
| >pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191 | Back alignment and structure |
|
| >pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195 | Back alignment and structure |
|
| >pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193 | Back alignment and structure |
|
| >pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179 | Back alignment and structure |
|
| >pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178 | Back alignment and structure |
|
| >pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180 | Back alignment and structure |
|
| >pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177 | Back alignment and structure |
|
| >pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178 | Back alignment and structure |
|
| >pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184 | Back alignment and structure |
|
| >pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182 | Back alignment and structure |
|
| >pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178 | Back alignment and structure |
|
| >pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178 | Back alignment and structure |
|
| >pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178 | Back alignment and structure |
|
| >pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194 | Back alignment and structure |
|
| >pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180 | Back alignment and structure |
|
| >pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193 | Back alignment and structure |
|
| >pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180 | Back alignment and structure |
|
| >pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193 | Back alignment and structure |
|
| >pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192 | Back alignment and structure |
|
| >pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196 | Back alignment and structure |
|
| >pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195 | Back alignment and structure |
|
| >pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182 | Back alignment and structure |
|
| >pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182 | Back alignment and structure |
|
| >pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183 | Back alignment and structure |
|
| >pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185 | Back alignment and structure |
|
| >pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201 | Back alignment and structure |
|
| >pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193 | Back alignment and structure |
|
| >pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190 | Back alignment and structure |
|
| >pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201 | Back alignment and structure |
|
| >pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180 | Back alignment and structure |
|
| >pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178 | Back alignment and structure |
|
| >pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177 | Back alignment and structure |
|
| >pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182 | Back alignment and structure |
|
| >pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184 | Back alignment and structure |
|
| >pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201 | Back alignment and structure |
|
| >pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180 | Back alignment and structure |
|
| >pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207 | Back alignment and structure |
|
| >pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212 | Back alignment and structure |
|
| >pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188 | Back alignment and structure |
|
| >pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214 | Back alignment and structure |
|
| >pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194 | Back alignment and structure |
|
| >pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188 | Back alignment and structure |
|
| >pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200 | Back alignment and structure |
|
| >pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184 | Back alignment and structure |
|
| >pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205 | Back alignment and structure |
|
| >pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197 | Back alignment and structure |
|
| >pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198 | Back alignment and structure |
|
| >pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167 | Back alignment and structure |
|
| >pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167 | Back alignment and structure |
|
| >pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167 | Back alignment and structure |
|
| >pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179 | Back alignment and structure |
|
| >pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171 | Back alignment and structure |
|
| >pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177 | Back alignment and structure |
|
| >pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191 | Back alignment and structure |
|
| >pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177 | Back alignment and structure |
|
| >pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174 | Back alignment and structure |
|
| >pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | Back alignment and structure |
|
| >pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168 | Back alignment and structure |
|
| >pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | Back alignment and structure |
|
| >pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187 | Back alignment and structure |
|
| >pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175 | Back alignment and structure |
|
| >pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166 | Back alignment and structure |
|
| >pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177 | Back alignment and structure |
|
| >pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211 | Back alignment and structure |
|
| >pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166 | Back alignment and structure |
|
| >pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172 | Back alignment and structure |
|
| >pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184 | Back alignment and structure |
|
| >pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | Back alignment and structure |
|
| >pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176 | Back alignment and structure |
|
| >pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168 | Back alignment and structure |
|
| >pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196 | Back alignment and structure |
|
| >pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199 | Back alignment and structure |
|
| >pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216 | Back alignment and structure |
|
| >pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216 | Back alignment and structure |
|
| >pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204 | Back alignment and structure |
|
| >pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189 | Back alignment and structure |
|
| >pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221 | Back alignment and structure |
|
| >pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216 | Back alignment and structure |
|
| >pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195 | Back alignment and structure |
|
| >pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200 | Back alignment and structure |
|
| >pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201 | Back alignment and structure |
|
| >pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203 | Back alignment and structure |
|
| >pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181 | Back alignment and structure |
|
| >pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220 | Back alignment and structure |
|
| >pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203 | Back alignment and structure |
|
| >pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216 | Back alignment and structure |
|
| >pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182 | Back alignment and structure |
|
| >pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221 | Back alignment and structure |
|
| >pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207 | Back alignment and structure |
|
| >pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181 | Back alignment and structure |
|
| >pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201 | Back alignment and structure |
|
| >pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171 | Back alignment and structure |
|
| >pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172 | Back alignment and structure |
|
| >pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171 | Back alignment and structure |
|
| >pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171 | Back alignment and structure |
|
| >pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173 | Back alignment and structure |
|
| >pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166 | Back alignment and structure |
|
| >pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219 | Back alignment and structure |
|
| >pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166 | Back alignment and structure |
|
| >pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189 | Back alignment and structure |
|
| >pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191 | Back alignment and structure |
|
| >pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166 | Back alignment and structure |
|
| >pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207 | Back alignment and structure |
|
| >pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166 | Back alignment and structure |
|
| >pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172 | Back alignment and structure |
|
| >pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173 | Back alignment and structure |
|
| >pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167 | Back alignment and structure |
|
| >pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166 | Back alignment and structure |
|
| >pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166 | Back alignment and structure |
|
| >pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172 | Back alignment and structure |
|
| >pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195 | Back alignment and structure |
|
| >pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166 | Back alignment and structure |
|
| >pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166 | Back alignment and structure |
|
| >pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183 | Back alignment and structure |
|
| >pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223 | Back alignment and structure |
|
| >pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166 | Back alignment and structure |
|
| >pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166 | Back alignment and structure |
|
| >pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166 | Back alignment and structure |
|
| >pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183 | Back alignment and structure |
|
| >pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185 | Back alignment and structure |
|
| >pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170 | Back alignment and structure |
|
| >pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190 | Back alignment and structure |
|
| >pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187 | Back alignment and structure |
|
| >pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177 | Back alignment and structure |
|
| >pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169 | Back alignment and structure |
|
| >pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186 | Back alignment and structure |
|
| >pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181 | Back alignment and structure |
|
| >pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168 | Back alignment and structure |
|
| >pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167 | Back alignment and structure |
|
| >pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200 | Back alignment and structure |
|
| >pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167 | Back alignment and structure |
|
| >pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192 | Back alignment and structure |
|
| >pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192 | Back alignment and structure |
|
| >pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195 | Back alignment and structure |
|
| >pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167 | Back alignment and structure |
|
| >pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172 | Back alignment and structure |
|
| >pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169 | Back alignment and structure |
|
| >pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178 | Back alignment and structure |
|
| >pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199 | Back alignment and structure |
|
| >pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193 | Back alignment and structure |
|
| >pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178 | Back alignment and structure |
|
| >pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187 | Back alignment and structure |
|
| >pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180 | Back alignment and structure |
|
| >pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174 | Back alignment and structure |
|
| >pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211 | Back alignment and structure |
|
| >pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218 | Back alignment and structure |
|
| >pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175 | Back alignment and structure |
|
| >pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171 | Back alignment and structure |
|
| >pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176 | Back alignment and structure |
|
| >pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166 | Back alignment and structure |
|
| >pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208 | Back alignment and structure |
|
| >pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208 | Back alignment and structure |
|
| >pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With Gtp-Gdp Length = 310 | Back alignment and structure |
|
| >pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp, Folinic Acid And Zn Length = 462 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 352 bits (904), Expect = e-125
Identities = 101/203 (49%), Positives = 138/203 (67%), Gaps = 12/203 (5%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
MS + IKCV VGDG VGKTCMLI YT++ FP +Y+PTVFDN+SA VDG V+LGLWD
Sbjct: 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDY RLRPLSY D+F++ +S++S +S++NV KW PEL+ P+ PI+LVGTK+
Sbjct: 64 TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLR+D+ L + + + QG++L +I A Y+ECS+ TQ+ ++ VFD A++ VL
Sbjct: 124 DLRDDKGYL----ADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179
Query: 181 RPEPVK--------RRQRKCVII 195
+P K R+ C I
Sbjct: 180 QPPRRKEVPRRRKNHRRSGCSIA 202
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 342 bits (879), Expect = e-122
Identities = 101/182 (55%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
MS+ R IKCV VGDG VGKTC+LISYT+++FP +YVPTVFDN+SA V+G V+LGLWD
Sbjct: 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDY+RLRPLSY DVF++ +S++S +S++NV+ KW PELKH+ P PI+LVGTK+
Sbjct: 63 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLR+D++ + P+ QG++L I A Y+ECS+ +Q ++ VFD A+R VL
Sbjct: 123 DLRDDKQF--FIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180
Query: 181 RP 182
+P
Sbjct: 181 QP 182
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 342 bits (879), Expect = e-122
Identities = 103/187 (55%), Positives = 139/187 (74%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
+ GR +KCV+VGDG VGKT +++SYTT+ +P EY+PT FDN+SA +VDG PV L L D
Sbjct: 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCD 74
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQ+++D+LRPL Y TD+FL+C+SVVSPSSF NV+ KW PE++ HCP APIILVGT+
Sbjct: 75 TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQS 134
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLRED + L L + PV E + LA +I+A Y+ECSALTQ+ L++VFD A+ A +
Sbjct: 135 DLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194
Query: 181 RPEPVKR 187
+ ++
Sbjct: 195 QYSDTQQ 201
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 339 bits (872), Expect = e-121
Identities = 86/180 (47%), Positives = 112/180 (62%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R +K V+VGDG GKT +L+ + +FP Y PTVF+ Y V G PV L +WDTAGQ
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
+DYDRLRPL YP V L+C+ V SP+SFDN+ ++WYPE+ H C PII+VG K DLR+
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
D+ +N L L PV +GQ++A + AV Y+ECSA + VF EA L
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSRG 212
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 338 bits (870), Expect = e-121
Identities = 79/183 (43%), Positives = 118/183 (64%), Gaps = 10/183 (5%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ +K VVVGDG VGKTC+L++++ P YVPTVF+N+S L LWDTAGQ
Sbjct: 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
E+YDRLRPLSY +DV L+C++V + +SFDN+++KW PE+KH+ A +LVG K+DLR+
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
D V +++G L K+ V Y+E S++ + GL +VF+++V + +P
Sbjct: 142 DGSD----------DVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKP 191
Query: 185 VKR 187
V +
Sbjct: 192 VPK 194
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 338 bits (868), Expect = e-120
Identities = 99/181 (54%), Positives = 123/181 (67%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
K VVVGDG GKTC+LI ++ D FP YVPTVF+NY A VDG V L LWDTAGQED
Sbjct: 26 KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 85
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYP TDV L+C+SV SP S +N+ KW PE+KH CP+ PIILV K DLR D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
L+ PV+ + G+ +A +I+A Y+ECSA T+ G+R+VF+ A RA L+
Sbjct: 146 HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYGS 205
Query: 187 R 187
+
Sbjct: 206 Q 206
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 334 bits (859), Expect = e-119
Identities = 101/175 (57%), Positives = 127/175 (72%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V+VGDG GKTC+LI ++ D FP YVPTVF+NY A VDG V L LWDTAGQED
Sbjct: 26 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR+D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T L++ PV+ E+G+ +AN+I A Y+ECSA T+ G+R+VF+ A RA L+
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 334 bits (859), Expect = e-119
Identities = 130/179 (72%), Positives = 157/179 (87%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
G+ IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDT
Sbjct: 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 85
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKID 121
AGQEDYDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+D
Sbjct: 86 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 145
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
LR+D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL
Sbjct: 146 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 330 bits (848), Expect = e-117
Identities = 80/183 (43%), Positives = 110/183 (60%), Gaps = 3/183 (1%)
Query: 1 MSSGRPI--KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGL 58
M + + K VVVGD GKT +L + D FP YVPTVF+NY+A F +D + L L
Sbjct: 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80
Query: 59 WDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGT 118
WDT+G YD +RPLSYP +D LIC+ + P + D+V KW E++ CP+ ++LVG
Sbjct: 81 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 140
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL-TQRGLRQVFDEAVR 177
K DLR D TL LS +PV +QG +A +I A Y+ECSAL ++ +R +F A
Sbjct: 141 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 200
Query: 178 AVL 180
A +
Sbjct: 201 ACV 203
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 326 bits (838), Expect = e-116
Identities = 133/185 (71%), Positives = 161/185 (87%)
Query: 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTA 62
S + IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTA
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDL 122
GQEDYDRLRPLSYPQTDV LIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DL
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
R+D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181
Query: 183 EPVKR 187
PVK+
Sbjct: 182 PPVKK 186
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 323 bits (830), Expect = e-115
Identities = 79/175 (45%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
K VVVGD GKT +L + D FP YVPTVF+NY+A F +D + L LWDT+G
Sbjct: 8 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YD +RPLSYP +D LIC+ + P + D+V KW E++ CP+ ++LVG K DLR D
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL-TQRGLRQVFDEAVRAVL 180
TL LS +PV +QG +A +I A Y+ECSAL ++ +R +F A A +
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 182
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 322 bits (828), Expect = e-114
Identities = 112/178 (62%), Positives = 139/178 (78%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+KCVVVGDG VGKTC+L+SY D+FP EYVPTVFD+Y+ TV G LGL+DTAGQ
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
EDYDRLRPLSYP TDVFLIC+SVV+P+SF NV +W PELK + P+ P +L+GT+IDLR+
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
D +TL L++ P+ EQGQKLA +I A Y+ECSALTQ+GL+ VFDEA+ A+L P
Sbjct: 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 316 bits (810), Expect = e-111
Identities = 73/188 (38%), Positives = 102/188 (54%), Gaps = 2/188 (1%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V+VGD GKT ML D +P YVPTVF+NY+A + V L LWDT+G
Sbjct: 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YD +RPL Y +D L+C+ + P + D+ KW E+ +CP ++L+G K DLR D
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 147
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT-QRGLRQVFDEAVRAVLRPEPV 185
TL LS Q +P+ EQG +A ++ A Y+E SA T ++ + +F A L P
Sbjct: 148 STLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK-PS 206
Query: 186 KRRQRKCV 193
Q+ V
Sbjct: 207 PLPQKSPV 214
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332 | Back alignment and structure |
|---|
Score = 294 bits (754), Expect = e-101
Identities = 128/182 (70%), Positives = 156/182 (85%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
++ IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWD
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 209
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAG EDYDRLRPLSYPQTDVFLIC+S+VSP+SF +V +KWYPE++HHCP+ PIILVGTK+
Sbjct: 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLR+D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
Query: 181 RP 182
P
Sbjct: 330 CP 331
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 2e-54
Identities = 58/197 (29%), Positives = 90/197 (45%), Gaps = 16/197 (8%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
M R K V++G VGKT + + F Y PTV + YS T+ L L D
Sbjct: 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGT 118
TAGQ++Y L +++ YSV S SF + Y +L H P++LVG
Sbjct: 79 TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGN 137
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178
K DL +RE V+ +G+KLA +ME SA + + +F + ++
Sbjct: 138 KADLSPERE------------VQAVEGKKLAESWG-ATFMESSARENQLTQGIFTKVIQE 184
Query: 179 VLRPEPVKRRQRKCVII 195
+ R E ++R+C ++
Sbjct: 185 IARVENSYGQERRCHLM 201
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 1e-51
Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 16/193 (8%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
M + K ++G +VGK+ + I + F Y PT+ + ++ TV+G L L D
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGT 118
TAGQ++Y + +++ YSV S SF+ + + +L PI+LVG
Sbjct: 61 TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGN 119
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178
K DL +R + E+G+ LA ++E SA + VF +
Sbjct: 120 KKDLHMERV------------ISYEEGKALAESWN-AAFLESSAKENQTAVDVFRRIILE 166
Query: 179 VLRPEPVKRRQRK 191
+ + + +
Sbjct: 167 AEKMDGACSQGKS 179
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 7e-50
Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 39/220 (17%)
Query: 1 MSSGRP--------IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGI 52
M++ +P K ++VG G VGK+ + + + D F +Y PT D+Y +DG
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 60
Query: 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPD 110
V + + DTAGQEDY +R + + FL +S+ SF + + ++ +
Sbjct: 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDEN 119
Query: 111 APIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQ 170
P +LVG K DL + R+ V E+ + A + V Y+E SA T+ + +
Sbjct: 120 VPFLLVGNKSDLEDKRQ------------VSVEEAKNRAEQWN-VNYVETSAKTRANVDK 166
Query: 171 VFDEAVRAVLR---------------PEPVKRRQRKCVII 195
VF + +R + KR + +C I+
Sbjct: 167 VFFDLMREIRARKMEDSKEKNGKKKRKSLAKRIRERCCIL 206
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 1e-49
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 17/180 (9%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ V G G VGK+ +++ + +F Y+PTV D Y + D +L + DT G
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL---KHHCPDAPIILVGTKID 121
+ ++ LS + F++ YS+ S S + + Y ++ K PI+LVG K D
Sbjct: 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCD 120
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
RE V+ + + LA + +ME SA ++++F E + R
Sbjct: 121 ESPSRE------------VQSSEAEALARTWK-CAFMETSAKLNHNVKELFQELLNLEKR 167
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 156 bits (398), Expect = 3e-49
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 15/179 (8%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R K VV+G G VGK+ + + + F +Y PT+ D+Y VD L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDL 122
E + +R L F + YS+ + S+F+++ ++ D P+ILVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
++R V +EQGQ LA + ++E SA ++ + ++F + VR + R
Sbjct: 121 EDERV------------VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 5e-49
Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 16/177 (9%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R K VV+G G VGK+ + + + T +F +Y PT+ D Y VD P L + DTAG
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDL 122
E + +R L F++ YS+V+ SF ++ ++ P+ILVG K+DL
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDL 120
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
+RE V +G+ LA + +ME SA ++ + ++F E VR +
Sbjct: 121 ESERE------------VSSSEGRALAEEWG-CPFMETSAKSKTMVDELFAEIVRQM 164
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 9e-49
Identities = 59/199 (29%), Positives = 94/199 (47%), Gaps = 26/199 (13%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VVVG VGK+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDLRED 125
+R + FL +++ + SF+++ + ++K D P++LVG K DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDL-PS 123
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR---- 181
R V +Q Q LA + ++E SA T++G+ F VR + +
Sbjct: 124 RT------------VDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
Query: 182 -----PEPVKRRQRKCVII 195
+ K+ + KCVI+
Sbjct: 171 MSKDGKKKKKKSKTKCVIM 189
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-48
Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 16/185 (8%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
K VVVG G VGK+ + I + F +Y PT+ D+Y+ +VDGIP L + DTAGQ
Sbjct: 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ 67
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDL 122
E++ +R FL+ +++ SF+ V K + ++ D P++LVG K DL
Sbjct: 68 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADL 126
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
R+ V R + V Y E SA + + + F++ VRAV +
Sbjct: 127 ESQRQ------------VPRSEASAFGASHH-VAYFEASAKLRLNVDEAFEQLVRAVRKY 173
Query: 183 EPVKR 187
+ +
Sbjct: 174 QEQEL 178
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 1e-48
Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 32/208 (15%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ VV G G VGK+ +++ + +F Y+PT+ D Y + D +L + DT G
Sbjct: 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGS 66
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL---KHHCPDAPIILVGTKID 121
+ ++ LS + F++ +SV S S + + Y + K D P++LVG K D
Sbjct: 67 HQFPAMQRLSISKGHAFILVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCD 125
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
RE V + Q +A + + +ME SA ++++F E + R
Sbjct: 126 E-TQRE------------VDTREAQAVAQEWK-CAFMETSAKMNYNVKELFQELLTLETR 171
Query: 182 --------------PEPVKRRQRKCVII 195
+ R + KC ++
Sbjct: 172 RNMSLNIDGKRSGKQKRTDRVKGKCTLM 199
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 2e-48
Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 18/189 (9%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
M+ +K + G VGK+ +++ + T F EY PT+ Y T+D VS+ + D
Sbjct: 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGT 118
TAGQED R + F++ Y + SF+ V L + +ILVG
Sbjct: 83 TAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGN 140
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRG-LRQVFDEAVR 177
K DL R+ V E+G+KLA ++ + ECSA T G + ++F E R
Sbjct: 141 KADLDHSRQ------------VSTEEGEKLATELA-CAFYECSACTGEGNITEIFYELCR 187
Query: 178 AVLRPEPVK 186
V R V+
Sbjct: 188 EVRRRRMVQ 196
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 9e-48
Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 16/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K ++VG G VGK+ + + + D F +Y PT D+Y +DG V + + DTAGQEDY
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDLRED 125
+R + + FL +S+ SF + + ++ + P +LVG K DL +
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R+ V E+ + A + V Y+E SA T+ + +VF + +R +
Sbjct: 139 RQ------------VSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMREIRA 181
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 1e-47
Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 26/192 (13%)
Query: 1 MSSGRP---------IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDG 51
SSGR K VVVG G VGK+ + I + F EY PT+ D+Y +DG
Sbjct: 7 HSSGRENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG 66
Query: 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CP 109
L + DTAGQE+Y +R + FL +++ + SF ++ + + ++K
Sbjct: 67 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSD 125
Query: 110 DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLR 169
D P++LVG K DL R V +Q +LA + ++E SA T++G+
Sbjct: 126 DVPMVLVGNKCDL-PTRT------------VDTKQAHELAKSYG-IPFIETSAKTRQGVE 171
Query: 170 QVFDEAVRAVLR 181
F VR + +
Sbjct: 172 DAFYTLVREIRQ 183
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 1e-47
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VVVG G VGK+ + I + F E PT+ D+Y +DG L + DTAGQE+Y
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLRED 125
+R + FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL-AA 122
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R V+ Q Q LA + Y+E SA T++G+ F VR + +
Sbjct: 123 RT------------VESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 1e-47
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K ++VG G VGK+ + + + D F +Y PT D+Y +DG V + + DTAGQEDY
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDLRED 125
+R + + FL +S+ SF + + ++ + P +LVG K DL +
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R+ V E+ + A++ V Y+E SA T+ + +VF + +R +
Sbjct: 125 RQ------------VSVEEAKNRADQWN-VNYVETSAKTRANVDKVFFDLMREIRA 167
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 3e-47
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 17/180 (9%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
K VVVGDG VGK+ + I + F +Y PT+ D+Y +D L + DTAGQ
Sbjct: 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ 76
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDL 122
E++ +R D FLI YSV +SF++V +++ + P+ILV K+DL
Sbjct: 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDL 135
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR-GLRQVFDEAVRAVLR 181
R+ V R+QG+++A K + Y+E SA + + F + VR + +
Sbjct: 136 MHLRK------------VTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ 182
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 1e-46
Identities = 53/185 (28%), Positives = 79/185 (42%), Gaps = 20/185 (10%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
+ ++G GK+ + + + T F EY P + D YS+ TVD PV L + DT
Sbjct: 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDT 76
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC----PDAPIILVG 117
A + R FL+ YSV S SFD+ S + L H P +L+G
Sbjct: 77 ADLDTP-RNCERYLNWAHAFLVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLG 134
Query: 118 TKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR-GLRQVFDEAV 176
K+D+ + R+ V + +G LA + + E SA ++ VF EAV
Sbjct: 135 NKLDMAQYRQ------------VTKAEGVALAGRFG-CLFFEVSACLDFEHVQHVFHEAV 181
Query: 177 RAVLR 181
R R
Sbjct: 182 REARR 186
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 1e-46
Identities = 56/188 (29%), Positives = 80/188 (42%), Gaps = 23/188 (12%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVF-DNYSAPFTVDGIPVSLGLWDTAGQED 66
K ++VG+ VGK+ + ++ + P D Y VD V+L ++D Q D
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84
Query: 67 YD-RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDLR 123
LR D FLI +SV SF V + L+ D P+ILVG K DL
Sbjct: 85 AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 143
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183
RE V E+G+ LA + K++E SA R++F+ AVR +
Sbjct: 144 RSRE------------VSLEEGRHLAGTLS-CKHIETSAALHHNTRELFEGAVRQIRL-- 188
Query: 184 PVKRRQRK 191
RR R
Sbjct: 189 ---RRGRN 193
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 148 bits (377), Expect = 3e-46
Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 17/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K +++G VGK+ + + G Y VDG SL ++D Q+
Sbjct: 4 KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDLRED 125
L D ++I YSV SF+ S+ +L+ D PIILVG K DL
Sbjct: 63 RWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRS 121
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
RE V ++G+ A K++E SA ++ +F+ VR +
Sbjct: 122 RE------------VSVDEGRACAVVFD-CKFIETSAALHHNVQALFEGVVRQIRL 164
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 1e-45
Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVF-DNYSAPFTVDGIPVSLGLWDTAGQED 66
K ++VG+ VGK+ + ++ + D Y VD V+L ++D Q D
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 67 YD-RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDLR 123
L+ D FLI +SV SF V + L+ D P+ILVG K DL
Sbjct: 64 AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 122
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
RE V E+G+ LA + K++E SA R++F+ AVR +
Sbjct: 123 RSRE------------VSLEEGRHLAGTLS-CKHIETSAALHHNTRELFEGAVRQIRL 167
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 2e-45
Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 24/191 (12%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ V++GD VGKT + + + D Y TVDG +L + DT
Sbjct: 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 65 EDYDR--LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKI 120
E D+ + ++I YS+ SF++ S+ +L+ H PIILVG K
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKA 121
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DL RE V E+G+ A K++E SA Q + ++F+ VR
Sbjct: 122 DLARCRE------------VSVEEGRACAVVFD-CKFIETSATLQHNVAELFEGVVRQ-- 166
Query: 181 RPEPVKRRQRK 191
++ R+R
Sbjct: 167 ----LRLRRRD 173
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 1e-44
Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 31/195 (15%)
Query: 1 MSSGRP--------IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGI 52
SSGR +K +VG+ + GK+ ++ Y T ++ E P + VDG
Sbjct: 7 HSSGRENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQ 65
Query: 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPD 110
L + D G + D + +S+ SF V ++ L +
Sbjct: 66 SYLLLIRDEGGPPELQFAA-----WVDAVVFVFSLEDEISFQTV-YNYFLRLCSFRNASE 119
Query: 111 APIILVGTKIDLRE--DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGL 168
P++LVGT+ + R + + +KL+ ++ Y E A +
Sbjct: 120 VPMVLVGTQDAISAANPRV------------IDDSRARKLSTDLKRCTYYETCATYGLNV 167
Query: 169 RQVFDEAVRAVLRPE 183
+VF + + V+
Sbjct: 168 ERVFQDVAQKVVALR 182
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 2e-43
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTT--DSFPGEYVPTVFDNYSAPFTVDGIPVSLGL- 58
S + V++G+ VGK+ + + DS + D Y VDG ++ L
Sbjct: 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92
Query: 59 --WDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPII 114
W+ G+ ++ L D +LI YS+ +SF+ S+ +L+ D PII
Sbjct: 93 DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPII 149
Query: 115 LVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174
LVG K DL RE V +G+ A K++E SA Q ++++F+
Sbjct: 150 LVGNKSDLVRCRE------------VSVSEGRACAVVFD-CKFIETSAAVQHNVKELFEG 196
Query: 175 AVRAVLRPEPVKRR 188
VR V K +
Sbjct: 197 IVRQVRLRRDSKEK 210
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 4e-42
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V+VGDG GKT + + T F +YV T+ + + F + P+ +WDTAGQE
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
+ LR Y Q +I + V S ++ NV W+ +L C + PI+L G K+D+++ +
Sbjct: 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 135
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ K + ++Y + SA + + F R ++
Sbjct: 136 VK--------------AKSIVFHRK-KNLQYYDISAKSNYNFEKPFLWLARKLIG 175
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 2e-41
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 15/176 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
IK VVVG+G VGK+ M+ Y F +Y T+ D V+ V L LWDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
++D + Y ++ +S SF+ + S W ++ D P LV KIDL +D
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDD 124
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+K E+ + LA ++ +++ S + +VF L+
Sbjct: 125 SC------------IKNEEAEGLAKRL-KLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 2e-40
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+ +L+ + ++F G Y+ T+ D ++G V L +WDTAGQE
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 66 DYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDL 122
R R ++ Y T ++ Y V S SF NV +W E+ +C D ILVG K D
Sbjct: 70 ---RFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDD 125
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
E + V+ E K A + ++ E SA + ++F+ VLR
Sbjct: 126 PERKV------------VETEDAYKFAGQ-MGIQLFETSAKENVNVEEMFNCITELVLR 171
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 3e-40
Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 25/190 (13%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
M S ++ V+GD GK+ ++ + T S+ T + Y VDG + + +
Sbjct: 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIRE 60
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH----CPDAPIILV 116
AG D D + +S+ +SF V S+ + +L + LV
Sbjct: 61 EAGAPDA-----KFSGWADAVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALV 114
Query: 117 GT--KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174
GT +I R V + + L ++ Y E A + +VF E
Sbjct: 115 GTQDRISASSPRV------------VGDARARALXADMKRCSYYETXATYGLNVDRVFQE 162
Query: 175 AVRAVLRPEP 184
+ V+
Sbjct: 163 VAQKVVTLRK 172
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 3e-40
Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 23/191 (12%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEY--VPTVFDNYSAPFTVDGIPVSLGL---WDTA 62
+ V++G+ VGK+ + + + D Y VDG ++ L W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKI 120
G+ ++ L D +LI YS+ +SF+ S+ +L+ D PIILVG K
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKS 124
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DL RE V +G+ A K++E SA Q ++++F+ VR V
Sbjct: 125 DLVRXRE------------VSVSEGRAXAVVFD-XKFIETSAAVQHNVKELFEGIVRQVR 171
Query: 181 RPEPVKRRQRK 191
K + +
Sbjct: 172 LRRDSKEKNER 182
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 9e-40
Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 17/177 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPT--VFDNYSAPFTVDGIPVSLGLWDTAGQE 65
K ++GDG VGKT + F Y T ++ G + +WDTAGQE
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
L+ + Y ++ + V S + N+ ++W E + +API++ KID++
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
++ + ++ ++ + +Y E SA T F R
Sbjct: 132 RQK------------ISKKLVMEVLKG-KNYEYFEISAKTAHNFGLPFLHLARIFTG 175
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 1e-39
Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 25/182 (13%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTAG 63
++ +++G VGKT ++ +T D+F TV F + + G + L +WDTAG
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKT--VELRGKKIRLQIWDTAG 84
Query: 64 QEDYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTK 119
QE R ++ Y ++ Y + +FD++ KW + + DA ++LVG K
Sbjct: 85 QE---RFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNK 140
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
+D DRE + R+QG+K A +I +++ E SA + ++F + V +
Sbjct: 141 LDCETDRE------------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
Query: 180 LR 181
L+
Sbjct: 189 LK 190
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 8e-39
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 21/180 (11%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V+VGD +VGKTC++ + T +F T+ D + G V L +WDTAGQE
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 66 DYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKID 121
R R ++ Y + ++ Y + SSF +V W +++ + + +L+G K D
Sbjct: 90 ---RFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSD 145
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
L E RE V + Q LA + +E SA + + F ++
Sbjct: 146 LSELRE------------VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 3e-38
Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 22/180 (12%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +++G+ +VGKT L Y DSF +V TV D + L +WDTAGQE
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 66 DYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKID 121
R R ++ Y FL+ Y + + SF V W ++K + +A +ILVG K D
Sbjct: 83 ---RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCD 138
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
L ++R V E G++LA+ + ++ E SA ++QVF+ V +
Sbjct: 139 LEDERV------------VPAEDGRRLADDLG-FEFFEASAKENINVKQVFERLVDVICE 185
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 4e-38
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 26/182 (14%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTAG 63
K +++GD VGKTC+L ++ D+F ++ T+ F + +DG + L +WDTAG
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRT--IELDGKRIKLQIWDTAG 66
Query: 64 QEDYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTK 119
QE R R ++ Y ++ Y + + SFDN+ W ++ H D +++G K
Sbjct: 67 QE---RFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNK 122
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
D+ + R+ V +E+G+KLA +K+ME SA + F R +
Sbjct: 123 CDVNDKRQ------------VSKERGEKLALD-YGIKFMETSAKANINVENAFFTLARDI 169
Query: 180 LR 181
Sbjct: 170 KA 171
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 8e-38
Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 20/180 (11%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K +++GDG VGK+ ++ Y T+ F + T+ + + VDG V++ +WDTAGQE
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-----PDAPIILVGTKID 121
+ LR Y +D L+ +SV SF N+ S W E ++ P +++G KID
Sbjct: 69 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKID 127
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ +R+ V E+ Q Y E SA + F+EAVR VL
Sbjct: 128 I-SERQ------------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 1e-37
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 25/192 (13%)
Query: 1 MSSGRP--IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGI-PV 54
MSS + +K +++GD VGKT ++ Y D + +Y T+ F TVDG
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKE--VTVDGDKVA 58
Query: 55 SLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-----P 109
++ +WDTAGQE + L Y D ++ Y V + SSF+N+ W E H
Sbjct: 59 TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPE 117
Query: 110 DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLR 169
P +++G KID E ++ V + Q+LA + + SA +
Sbjct: 118 TFPFVILGNKIDAEESKKI-----------VSEKSAQELAKSLGDIPLFLTSAKNAINVD 166
Query: 170 QVFDEAVRAVLR 181
F+E R+ L+
Sbjct: 167 TAFEEIARSALQ 178
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 1e-37
Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 16/177 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L+ +T F + T+ + + +DG + L +WDTAGQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ + Y L+ Y + +F+++ + W + + H + I+L+G K DL
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLES 140
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R+ VKRE+G+ A + + +ME SA T + + F + + R
Sbjct: 141 RRD------------VKREEGEAFARE-HGLIFMETSAKTACNVEEAFINTAKEIYR 184
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-37
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K +++GD VGK+C+L +T F + T+ + + V G + L +WDTAGQE
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRED 125
+ + Y L+ Y + S+++++ S W + ++ P+ IIL+G K DL
Sbjct: 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQ 135
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R+ V E+ ++ A + + ++E SA T + F EA + + +
Sbjct: 136 RD------------VTYEEAKQFAEE-NGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 1e-37
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L+ + D++ Y+ T+ D +DG + L +WDTAGQE
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ + Y ++ Y V SF+NV +W E+ + + +LVG K DL
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 152
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ V ++ A+ + + ++E SA + Q F + +
Sbjct: 153 KKV------------VDYTTAKEFADSL-GIPFLETSAKNATNVEQSFMTMAAEIKK 196
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 1e-37
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V++G+ VGKTC++ +T FP T+ D ++G V L +WDTAGQE
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ + Y + ++ Y + SF + +W E++ + +LVG KIDL E
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAE 145
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
RE V +++ ++ + + + Y+E SA + ++F + ++
Sbjct: 146 RRE------------VSQQRAEEFSEA-QDMYYLETSAKESDNVEKLFLDLACRLIS 189
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 1e-37
Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 33/191 (17%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-----------FDNYSAPFTVDGIPVS 55
IK + +GD VGKT +L YT F +++ TV N G +
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 56 LGLWDTAGQEDYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPD 110
L LWDTAG E R R L+ + FL+ + + + SF NV W +L+ H +
Sbjct: 72 LQLWDTAGLE---RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSEN 127
Query: 111 APIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQ 170
I+L G K DL + R VK E+ ++LA K + Y E SA +
Sbjct: 128 PDIVLCGNKSDLEDQRA------------VKEEEARELAEKYG-IPYFETSAANGTNISH 174
Query: 171 VFDEAVRAVLR 181
+ + +++
Sbjct: 175 AIEMLLDLIMK 185
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-37
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 18/178 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
+K +++G+ VGK+ +L+ +T D+F E T+ D +VDG L +WDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLR 123
+ L P Y ++ Y V +F + W EL+ +C D +LVG KID
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK- 133
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
E+RE V R +G K A K + ++E SA T G++ F+E V +++
Sbjct: 134 ENRE------------VDRNEGLKFARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQ 178
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 2e-37
Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 26/182 (14%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTAG 63
K +++G+ +VGKT L Y D+F +V TV F + V L +WDTAG
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKT--VYRHEKRVKLQIWDTAG 81
Query: 64 QEDYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTK 119
QE R R ++ Y F++ Y + + SF+ V W ++K + +A +ILVG K
Sbjct: 82 QE---RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNK 137
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
D+ E+R V E+GQ LA ++ + E SA +RQ F+ V A+
Sbjct: 138 CDMEEERV------------VPTEKGQLLAEQLG-FDFFEASAKENISVRQAFERLVDAI 184
Query: 180 LR 181
Sbjct: 185 CD 186
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-37
Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 33/191 (17%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---F--------DNYSAPFTVDGIPVS 55
IK + +GD VGKT L YT + F +++ TV F + V
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 56 LGLWDTAGQEDYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPD 110
L LWDTAGQE R R L+ + FL+ + + S SF NV W +L+ + C +
Sbjct: 86 LQLWDTAGQE---RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCEN 141
Query: 111 APIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQ 170
I+L+G K DL + RE V Q ++LA+K + Y E SA T + + +
Sbjct: 142 PDIVLIGNKADLPDQRE------------VNERQARELADKYG-IPYFETSAATGQNVEK 188
Query: 171 VFDEAVRAVLR 181
+ + +++
Sbjct: 189 AVETLLDLIMK 199
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 2e-37
Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 16/177 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V++G+ VGKT +L +T + F + T+ + + + V +WDTAG E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y + Y L+ + + ++ V +W EL H ++LVG K DL +
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQ 144
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
RE V E+ + A + ++E SAL + F+ ++ +
Sbjct: 145 ARE------------VPTEEARMFAEN-NGLLFLETSALDSTNVELAFETVLKEIFA 188
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 3e-37
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 22/179 (12%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K +V+G+ GK+C+L + F + T+ + S V G V L +WDTAGQE
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE- 70
Query: 67 YDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDL 122
R R ++ Y L+ Y + S +++ + + W + + + IIL G K DL
Sbjct: 71 --RFRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDL 127
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
DRE V + + A + + ++E SALT + + F + R +L
Sbjct: 128 DADRE------------VTFLEASRFAQE-NELMFLETSALTGENVEEAFVQCARKILN 173
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 3e-37
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 22/180 (12%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +++G+ +VGKT L Y DSF +V TV D + + L +WDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 66 DYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKID 121
R R ++ Y F++ Y + + SF+ V W ++K + +A ++LVG K D
Sbjct: 69 ---RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ ++R V E+G++LA+ + ++ E SA ++Q F+ V +
Sbjct: 125 MEDERV------------VSSERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVICE 171
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 4e-37
Identities = 51/180 (28%), Positives = 74/180 (41%), Gaps = 16/180 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V+ GD VGK+ L+ + F T+ D VDG L LWDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 66 DYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKID 121
R R ++ + + D L+ Y V SF N+ +W ++ PI+LVG K D
Sbjct: 89 ---RFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKAD 144
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+R+ + V G+KLA + E SA + + R V +
Sbjct: 145 IRDTAA------TEGQKCVPGHFGEKLAMTYG-ALFCETSAKDGSNIVEAVLHLAREVKK 197
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 4e-37
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V +G+ +VGKT ++ + DSF Y T+ D S ++ V L LWDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ L P + V ++ Y + + +SF T KW +++ D I+LVG K DL +
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLAD 135
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
R+ V E+G++ A ++ V ++E SA ++Q+F A+ E
Sbjct: 136 KRQ------------VSIEEGERKAKEL-NVMFIETSAKAGYNVKQLFRRVAAALPGMES 182
Query: 185 VKRRQRK 191
+ R R+
Sbjct: 183 TQDRSRE 189
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 5e-37
Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 27/182 (14%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTAG 63
+K +++GD VGK+C+L+ + D F ++ T+ F + ++G V L +WDTAG
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKT--VDINGKKVKLQIWDTAG 61
Query: 64 QEDYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTK 119
QE R R ++ Y ++ Y + +F N+ +W+ + H +A ++LVG K
Sbjct: 62 QE---RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNK 117
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
D+ E R V +QG+ LA + + ++E SA + ++F + +
Sbjct: 118 SDM-ETRV------------VTADQGEALAKE-LGIPFIESSAKNDDNVNEIFFTLAKLI 163
Query: 180 LR 181
Sbjct: 164 QE 165
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 6e-37
Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 27/183 (14%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTA 62
K ++VGD VGKTC+L+ + +F G ++ TV F N VDG+ V L +WDTA
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKV--LDVDGVKVKLQMWDTA 68
Query: 63 GQEDYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGT 118
GQE R R ++ Y L+ Y V + +SFDN+ W E+ + D ++L+G
Sbjct: 69 GQE---RFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGN 124
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178
K+D +R VKRE G+KLA + + +ME SA T + F +
Sbjct: 125 KVDSAHERV------------VKREDGEKLAKEY-GLPFMETSAKTGLNVDLAFTAIAKE 171
Query: 179 VLR 181
+ R
Sbjct: 172 LKR 174
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 7e-37
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 22/186 (11%)
Query: 1 MSSGRP------IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIP 53
MSSG K V +G+ +VGKT ++ + DSF Y T+ D S ++
Sbjct: 3 MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 62
Query: 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAP 112
V L LWDTAGQE + L P + V ++ Y + + +SF + KW +++ D
Sbjct: 63 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTS-KWIDDVRTERGSDVI 121
Query: 113 IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
I+LVG K DL + R+ V E+G++ A ++ V ++E SA ++Q+F
Sbjct: 122 IMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 168
Query: 173 DEAVRA 178
A
Sbjct: 169 RRVAAA 174
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 9e-37
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L+ + D++ Y+ T+ D +DG + L +WDTAGQE
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ + Y ++ Y V SF+NV +W E+ + + +LVG K DL
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 135
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ V ++ A+ + + ++E SA + Q F + +
Sbjct: 136 KKV------------VDYTTAKEFADSL-GIPFLETSAKNATNVEQSFMTMAAEIKK 179
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 1e-36
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 20/181 (11%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDG-IPVSLGLWDTAGQ 64
+K VV+GDG GKT + + ++F +Y T+ D + T+ G + V+L +WD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK----HHCPDAPIILVGTKI 120
++ L+ Y + + SF+N+ WY +K + LVG KI
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKI 125
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DL R +K E+ + + SA T + F + +L
Sbjct: 126 DLEHMRT------------IKPEKHLRFCQE-NGFSSHFVSAKTGDSVFLCFQKVAAEIL 172
Query: 181 R 181
Sbjct: 173 G 173
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 1e-36
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 16/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K +V+G GK+C+L + + F + T+ + S V G V L +WDTAGQE
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRED 125
+ + Y L+ Y + S +++++ + W + + P+ +IL G K DL +
Sbjct: 87 FRSVTRSYYRGAAGALLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPE 145
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
RE V + + A + + ++E SALT + + F + R +L
Sbjct: 146 RE------------VTFLEASRFAQE-NELMFLETSALTGENVEEAFLKCARTILN 188
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-36
Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V++G+G VGKT +++ Y + F +++ T+ + + G V+L +WDTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ L P+ Y ++ ++ Y + SF V W EL+ + + +VG KIDL +
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
+R V ++ + A + K+ SA +G+ ++F + + ++
Sbjct: 126 ERH------------VSIQEAESYAESV-GAKHYHTSAKQNKGIEELFLDLCKRMI 168
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 2e-36
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 26/182 (14%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTAG 63
K +++G+ VGK+C+L+ ++ D++ +Y+ T+ F + +DG V L +WDTAG
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKT--VELDGKTVKLQIWDTAG 66
Query: 64 QEDYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTK 119
QE R R ++ Y + +I Y V SF+ V W E+ + +LVG K
Sbjct: 67 QE---RFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNK 122
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
DL++ R V+ + ++ A+ + ++E SAL + F R +
Sbjct: 123 CDLKDKRV------------VEYDVAKEFADA-NKMPFLETSALDSTNVEDAFLTMARQI 169
Query: 180 LR 181
Sbjct: 170 KE 171
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 2e-36
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 22/179 (12%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V++GD VGK+ +L +T + F E T+ + + VDG + +WDTAGQE
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE- 65
Query: 67 YDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDL 122
R R ++ Y L+ Y + +++NV +W EL+ H + I+LVG K DL
Sbjct: 66 --RYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R R V ++ + A K + ++E SAL + + F + + R
Sbjct: 123 RHLRA------------VPTDEARAFAEK-NNLSFIETSALDSTNVEEAFKNILTEIYR 168
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 3e-36
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V++GD VGK+ +L +T + F E T+ + + VDG + +WDTAG E
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE- 89
Query: 67 YDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDL 122
R R ++ Y L+ Y + +++NV +W EL+ H + I+LVG K DL
Sbjct: 90 --RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDL 146
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
R R V ++ + A K + ++E SAL + F + +
Sbjct: 147 RHLRA------------VPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEI 190
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 5e-36
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 16/182 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
+K ++GD VGK+ ++ + D F PT+ + +WDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLRE 124
+ L P+ Y + +I Y + SF + KW ELK H + + + G K DL +
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSD 142
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
RE V + ++ A I +E SA + ++F R + +P
Sbjct: 143 IRE------------VPLKDAKEYAESIG-AIVVETSAKNAINIEELFQGISRQIPPLDP 189
Query: 185 VK 186
+
Sbjct: 190 HE 191
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 6e-36
Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 16/182 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V++GD GK+ +++ + D F T+ +S V+ V +WDTAGQE
Sbjct: 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y L P+ Y +I + V + +SF+ KW EL+ P+ + L G K DL +
Sbjct: 73 RYHSLAPMYYRGAAAAIIVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGNKSDLLD 131
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
R+ V E Q A + + +ME SA T ++++F E R + R +P
Sbjct: 132 ARK------------VTAEDAQTYAQENG-LFFMETSAKTATNVKEIFYEIARRLPRVQP 178
Query: 185 VK 186
+
Sbjct: 179 TE 180
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 6e-36
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 29/193 (15%)
Query: 1 MSSGRP-------IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGI 52
MSS K V++GD VGK+ +L +T + F + T+ + + ++G
Sbjct: 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK 60
Query: 53 PVSLGLWDTAGQEDYDRLRPLS---YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC- 108
+ +WDTAGQE R R ++ Y LI Y + SS++N + W EL+ +
Sbjct: 61 RIKAQIWDTAGQE---RYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENAD 116
Query: 109 PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGL 168
+ + L+G K DL R V E+ + A + + + E SAL +
Sbjct: 117 DNVAVGLIGNKSDLAHLRA------------VPTEESKTFAQE-NQLLFTETSALNSENV 163
Query: 169 RQVFDEAVRAVLR 181
+ F+E + + +
Sbjct: 164 DKAFEELINTIYQ 176
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 8e-36
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 21/179 (11%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTAG 63
+K +++GD VGK+C+L+ + D F ++ T+ F + ++G V L LWDTAG
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKT--VDINGKKVKLQLWDTAG 78
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDL 122
QE + + Y ++ Y V +F N+ +W+ + H +A ++LVG K D+
Sbjct: 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM 137
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
E R V +QG+ LA ++ + ++E SA + ++F + +
Sbjct: 138 -ETRV------------VTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAKLIQE 182
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-35
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V++G+ VGK+ +++ + F T+ + +D V +WDTAGQE
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLRED 125
Y L P+ Y ++ Y + + SF W EL+ P+ I L G K DL
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKADLANK 126
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R V ++ Q A+ + +ME SA T + ++F + + +
Sbjct: 127 RA------------VDFQEAQSYADDNS-LLFMETSAKTSMNVNEIFMAIAKKLPK 169
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 1e-35
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 24/186 (12%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPF-----TVDGIPVSL 56
S+ R +K ++GD VGK+ ++ + DSF PT+ A F
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTI----GASFMTKTVQYQNELHKF 57
Query: 57 GLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIIL 115
+WDTAG E + L P+ Y + +I Y + +F + W EL+ H P + +
Sbjct: 58 LIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLK-NWVRELRQHGPPSIVVAI 116
Query: 116 VGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEA 175
G K DL + RE V + A+ I ++E SA + ++F E
Sbjct: 117 AGNKCDLTDVRE------------VMERDAKDYADSIH-AIFVETSAKNAININELFIEI 163
Query: 176 VRAVLR 181
R +
Sbjct: 164 SRRIPS 169
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 3e-34
Identities = 52/183 (28%), Positives = 73/183 (39%), Gaps = 27/183 (14%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +V+GD VGKTC+ + FP T+ D +DG + + LWDTAGQE
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 66 DYDRLRPLS-----YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGT 118
R R S Y + Y + + +SF ++ W E K H D P ILVG
Sbjct: 81 ---RFRK-SMVQHYYRNVHAVVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGN 135
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178
K DLR + V + QK A+ ++ E SA V +
Sbjct: 136 KCDLRSAIQ------------VPTDLAQKFADT-HSMPLFETSAKNPNDNDHV-EAIFMT 181
Query: 179 VLR 181
+
Sbjct: 182 LAH 184
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 6e-34
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 22/192 (11%)
Query: 1 MSSGRP--IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLG 57
M+S + +K +++GD VGKT ++ Y F +Y T+ D + VD V++
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-----PDAP 112
+WDTAGQE + L Y D ++ + V +P++F + W E + P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFP 119
Query: 113 IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
+++G KIDL E+R+ V ++ Q + Y E SA + Q F
Sbjct: 120 FVVLGNKIDL-ENRQ------------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166
Query: 173 DEAVRAVLRPEP 184
R L+ E
Sbjct: 167 QTIARNALKQET 178
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 8e-34
Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 19/184 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTV-FDNYSAPFTVDG---IPVSLGLWD 60
+K ++VG+ GKT +L G TV D P + + L +WD
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
AG+E++ P Q ++L Y + + + W +K +P+ILVGT +
Sbjct: 63 FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHL 122
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKI----RAVKYMECSALTQRGLRQVFDEAV 176
D+ ++++ + ++L NK + + L ++ +
Sbjct: 123 DVSDEKQ---------RKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTII 173
Query: 177 RAVL 180
L
Sbjct: 174 NESL 177
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-32
Identities = 45/184 (24%), Positives = 70/184 (38%), Gaps = 23/184 (12%)
Query: 8 KCVVVGDGTVGKTCMLISYT--TDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLW--DTA 62
K VVG+ TVGK+ ++ +T F +Y T + AP T+ VS+ L+ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA----PIILVGT 118
G + Y + ++ + V S SF++ W+ LK PD +LV
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVAN 140
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA-LTQRGLRQVFDEAVR 177
K DL R V+ + Q A + + + SA + F
Sbjct: 141 KTDLPPQRHQ-----------VRLDMAQDWATT-NTLDFFDVSANPPGKDADAPFLSIAT 188
Query: 178 AVLR 181
R
Sbjct: 189 TFYR 192
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 120 bits (301), Expect = 5e-32
Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 26/192 (13%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS---------APFTVDGIPVSLG 57
IK ++GDG GKT +L ++F + T N +
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117
WD GQE ++ V+++ + N W ++ + +P+I+V
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNK-HYWLRHIEKYGGKSPVIVVM 157
Query: 118 TKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177
KID +++++ + I ++ S G+ +
Sbjct: 158 NKIDENPSYN------------IEQKKINERFPAIEN-RFHRISCKNGDGVESIAKSLKS 204
Query: 178 AVLRPEPVKRRQ 189
AVL P+ +
Sbjct: 205 AVLHPDSIYGTP 216
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 1e-29
Identities = 42/219 (19%), Positives = 77/219 (35%), Gaps = 54/219 (24%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV--------------------- 39
M K V++G+ +VGK+ +++ T D+F T+
Sbjct: 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN 61
Query: 40 -----------------FDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82
N + + + +WDTAGQE Y + PL Y +
Sbjct: 62 NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI 121
Query: 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR 142
+ + + + ++ D W +LK + IILV KID + V
Sbjct: 122 VVFDISNSNTLDRA-KTWVNQLKIS-SNYIIILVANKIDK-NKFQ------------VDI 166
Query: 143 EQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ QK A + +++ SA T ++ +F + +
Sbjct: 167 LEVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYK 204
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 7e-28
Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 13/177 (7%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
IK V++G+ VGK+ +++ + ++ F PT+ + T++ V +WDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ L P Y L+ Y V P SF W EL D I LVG KID +
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ V RE+G+KLA + + + + E SA T + VF +
Sbjct: 123 E---------GGERKVAREEGEKLAEE-KGLLFFETSAKTGENVNDVFLGIGEKIPL 169
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 1e-16
Identities = 30/163 (18%), Positives = 53/163 (32%), Gaps = 25/163 (15%)
Query: 29 DSFPGEYVPTVFDNYSAPFTVDGIPVSLGL----WDTAGQEDY--DRLRPLSYPQTDVFL 82
D + T Y + + L D G E + P D FL
Sbjct: 108 DQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFL 167
Query: 83 ICYSV--VSPSSFDNVTSKWYPELKHHCPDA--PIILVGTKIDLREDRETLNLLSEQNLS 138
+ V +FD+ K+ L + PI++V TK D +R
Sbjct: 168 LGIDVSRGMNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------- 215
Query: 139 PVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
++ L+ K ++ +E SA + + F V+ + +
Sbjct: 216 -IRDAHTFALSKK--NLQVVETSARSNVNVDLAFSTLVQLIDK 255
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 8e-12
Identities = 40/199 (20%), Positives = 58/199 (29%), Gaps = 45/199 (22%)
Query: 7 IKCVVVGDGTVGKTCML----------ISYTTDSFPGEYVPTVFDNYSAPF--TVDGIPV 54
K V G G GKT L S E T+F ++ V G
Sbjct: 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74
Query: 55 SLGLWDTAGQEDYDRLRPLSYPQTD--VFLI----CYSVVSPSSFDNVTSKWYPELKHHC 108
L+ GQ Y+ R L D VF+ + S N+ + E
Sbjct: 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMR-ENLAEYGLTL 133
Query: 109 PDAPIILVGTKIDLR------EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162
D PI++ K DL R ++ + +E A
Sbjct: 134 DDVPIVIQVNKRDLPDALPVEMVRAVVDPEGK--------------------FPVLEAVA 173
Query: 163 LTQRGLRQVFDEAVRAVLR 181
+G+ + E R VL
Sbjct: 174 TEGKGVFETLKEVSRLVLA 192
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 4e-08
Identities = 26/140 (18%), Positives = 57/140 (40%), Gaps = 14/140 (10%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYV---PTVFDNYSAPFTVDGIP-VSLGLWDTAG 63
K +++G GK+ M ++ + T+ +S + + ++L LWD G
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS---HLRFLGNMTLNLWDCGG 61
Query: 64 QEDY-----DRLRPLSYPQTDVFLICYSVVSPSSFDNVT--SKWYPELKHHCPDAPIILV 116
Q+ + + + + V + + V S ++ +K +L+ + PDA I ++
Sbjct: 62 QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121
Query: 117 GTKIDLREDRETLNLLSEQN 136
K+DL + + L
Sbjct: 122 LHKMDLVQLDKREELFQIMM 141
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 6e-06
Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 15/126 (11%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGE---YVPTV-FDNYSAPFTVDGIPVSLGLWDTA 62
+ +++G GK+ + P E T + V+ +WD
Sbjct: 21 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSF---VNFQIWDFP 77
Query: 63 GQEDYDRL---RPLSYPQTDVFLICYSVVSPSSFDNVTSK---WYPELKHHCPDAPIILV 116
GQ D+ + + T + Y + + + ++ + PD +
Sbjct: 78 GQMDFFDPTFDYEMIFRGTGA--LIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVF 135
Query: 117 GTKIDL 122
K+D
Sbjct: 136 IHKVDG 141
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 1e-05
Identities = 37/269 (13%), Positives = 65/269 (24%), Gaps = 115/269 (42%)
Query: 5 RPIKCVVV-GDGTVGKTCMLISYTTDS-----FPGEYVPTVF------------------ 40
RP K V++ G GKT + + + +F
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK----IFWLNLKNCNSPETVLEMLQ 203
Query: 41 -------DNYSA-PFTVDGIPVSLGLWDTAGQEDYDRLRPL----SYPQTDVFLICYSVV 88
N+++ I + + LR L Y C V+
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRI-------HSIQAELRRLLKSKPYEN------CLLVL 250
Query: 89 SPSSFDNVTSKWYPE----LKHHCPDAPIILVGTK----IDLR----------------- 123
NV + C IL+ T+ D
Sbjct: 251 -----LNV---QNAKAWNAFNLSCK----ILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 124 EDRETLNLLS------EQNLSPVKREQGQKLA------------NKIRAVKYMECSALTQ 165
E +LL Q+L P + K++ C LT
Sbjct: 299 TPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT- 356
Query: 166 RGLRQVFDEAVRAVLRPEPVKRRQRKCVI 194
+ + ++ VL P ++ + +
Sbjct: 357 ----TIIESSL-NVLEPAEYRKMFDRLSV 380
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 4e-05
Identities = 40/190 (21%), Positives = 68/190 (35%), Gaps = 48/190 (25%)
Query: 5 RPIKCVVVG-DGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIP---VSLGLWD 60
+ K + +G D GKT +L D PT T + + + +D
Sbjct: 22 KHGKLLFLGLDNA-GKTTLLHMLKNDRL-ATLQPTWH------PTSEELAIGNIKFTTFD 73
Query: 61 TAGQEDYDRLRPL---SYPQTD--VFLICYSV------VSPSSFDNVTSKWYPELKHHCP 109
G + R L +P+ + VFL+ + + D + + ELK
Sbjct: 74 LGGH---IQARRLWKDYFPEVNGIVFLV-DAADPERFDEARVELDALFNI--AELK---- 123
Query: 110 DAPIILVGTKIDLR------EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163
D P +++G KID E R L LL+ ++ + R V+ CS +
Sbjct: 124 DVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQ---------RPVEVFMCSVV 174
Query: 164 TQRGLRQVFD 173
+ G + F
Sbjct: 175 MRNGYLEAFQ 184
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 1e-04
Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 29/183 (15%)
Query: 5 RPIKCVVVG-DGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG 63
+ K V +G D GKT +L D G++VPT+ S T+ G+ + +D G
Sbjct: 24 KTGKLVFLGLDNA-GKTTLLHMLKDDRL-GQHVPTLHPT-SEELTIAGM--TFTTFDLGG 78
Query: 64 QEDYDRLRPL---SYPQTD--VFLICYS------VVSPSSFDNVTSKWYPELKHHCPDAP 112
+ R + P + VFL+ + S D++ + + + P
Sbjct: 79 H---IQARRVWKNYLPAINGIVFLV-DCADHERLLESKEELDSLMTD--ETIA----NVP 128
Query: 113 IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI--RAVKYMECSALTQRGLRQ 170
I+++G KID E L L +G ++ R ++ CS L ++G +
Sbjct: 129 ILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188
Query: 171 VFD 173
F
Sbjct: 189 GFR 191
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 1e-04
Identities = 34/194 (17%), Positives = 72/194 (37%), Gaps = 59/194 (30%)
Query: 5 RPIKCVVVG-DGTVGKTCMLISY---TTDSFPGEYVPTVFDNYSAPFTVDGIP---VSLG 57
+ + + +G D + GKT ++ +++ +PT+ F+++ +S
Sbjct: 20 KEVHVLCLGLDNS-GKTTII--NKLKPSNAQSQNILPTI------GFSIEKFKSSSLSFT 70
Query: 58 LWDTAGQEDYDRLRPL---SYPQTDVFLICYSV---------VSPSSFDNVTSKWYPELK 105
++D +GQ R R L Y + I + + V+ D + + P++K
Sbjct: 71 VFDMSGQ---GRYRNLWEHYYKEGQA--IIFVIDSSDRLRMVVAKEELDTLLNH--PDIK 123
Query: 106 HHCPDAPIILVGTKIDLR------EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159
H PI+ K+DLR + + L L + ++ +
Sbjct: 124 HR--RIPILFFANKMDLRDAVTSVKVSQLLCLENIKD----------------KPWHICA 165
Query: 160 CSALTQRGLRQVFD 173
A+ GL++ D
Sbjct: 166 SDAIKGEGLQEGVD 179
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 37.9 bits (89), Expect = 7e-04
Identities = 37/177 (20%), Positives = 59/177 (33%), Gaps = 54/177 (30%)
Query: 18 GKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIP---VSLGLWDTAGQEDYDRLRPL- 73
GKT + + F + +PTV F + I V++ LWD GQ R R +
Sbjct: 34 GKTTFVNVIASGQFNEDMIPTV------GFNMRKITKGNVTIKLWDIGGQ---PRFRSMW 84
Query: 74 --SYPQTDVFLICYSV---------VSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDL 122
I Y V S + N+ K P+L+ P++++G K DL
Sbjct: 85 ERYCRGVSA--IVYMVDAADQEKIEASKNELHNLLDK--PQLQ----GIPVLVLGNKRDL 136
Query: 123 R------EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173
E E +NL + Q+ R + S + +
Sbjct: 137 PGALDEKELIEKMNLSAIQD----------------REICCYSISCKEKDNIDITLQ 177
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 195 | |||
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 100.0 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 100.0 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 100.0 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 100.0 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 100.0 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 100.0 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 100.0 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 100.0 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 100.0 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 100.0 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 100.0 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 100.0 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 100.0 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 100.0 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 100.0 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 100.0 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 100.0 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 100.0 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 100.0 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 100.0 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 100.0 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 100.0 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 100.0 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 100.0 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 100.0 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 100.0 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 100.0 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 100.0 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 100.0 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 100.0 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 100.0 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 100.0 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 100.0 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 100.0 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 100.0 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 100.0 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 100.0 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 100.0 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 100.0 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 100.0 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 100.0 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 100.0 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 100.0 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 100.0 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 100.0 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 100.0 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 100.0 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 100.0 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 100.0 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 100.0 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 100.0 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 100.0 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 100.0 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 100.0 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 100.0 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 100.0 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 100.0 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 100.0 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 100.0 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 100.0 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 100.0 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 100.0 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 100.0 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 100.0 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 100.0 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 100.0 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 100.0 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 100.0 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 100.0 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 100.0 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 100.0 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 100.0 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 100.0 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 100.0 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 100.0 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 100.0 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 100.0 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 100.0 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 100.0 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 100.0 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 100.0 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 100.0 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 100.0 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 100.0 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 100.0 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 100.0 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 100.0 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.98 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.98 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.98 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.98 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.97 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.97 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.97 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.97 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.97 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.97 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.97 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.97 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.97 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.97 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.97 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.97 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.97 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.96 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.96 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.96 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.96 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.96 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.95 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.95 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.95 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.95 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.95 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.95 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.95 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.94 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.94 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.94 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.94 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.94 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.94 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.93 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.93 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.93 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.93 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.93 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.92 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.92 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.92 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.92 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.91 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.91 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.91 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.91 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.91 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.91 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.91 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.9 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.9 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.9 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.9 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.9 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.9 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.9 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.9 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.89 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.89 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.89 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.88 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.88 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.88 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.88 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.88 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.88 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.88 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.87 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.87 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.87 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.87 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.87 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.87 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.86 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.86 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.86 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.86 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.86 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.85 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.85 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.85 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.84 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.83 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.83 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.83 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.82 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.82 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.8 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.8 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.8 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.8 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.79 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.79 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.79 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.79 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.78 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.77 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.76 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.76 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.76 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.74 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.71 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.71 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.71 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.7 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.68 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.67 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.65 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.64 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.64 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.62 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.61 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.6 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.59 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.55 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.54 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.52 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.51 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.43 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.41 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.37 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.14 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.04 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.04 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.02 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.01 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.98 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.95 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.94 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.86 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.8 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.62 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.56 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.54 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.51 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.5 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.48 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.39 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.26 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 98.19 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.14 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.11 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.09 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.8 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.71 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.62 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 97.58 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.56 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.56 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.54 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.51 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.5 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.5 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.49 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.47 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.46 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.46 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.45 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.42 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.36 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.36 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.35 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.34 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.34 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.33 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 97.32 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.32 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.31 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.3 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.28 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.28 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.27 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.27 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.27 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.27 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.26 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.25 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.24 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.24 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.24 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.23 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.23 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.23 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.22 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.19 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.19 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.19 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.19 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.18 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.18 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.18 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 97.17 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.16 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.16 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.15 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.15 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.15 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 97.15 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.14 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.14 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.13 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 97.11 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.1 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 97.1 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.09 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 97.08 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.07 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.07 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.06 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.06 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.06 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.06 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.05 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.05 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.03 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.03 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.03 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.02 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 97.02 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.02 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.01 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.01 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.01 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 97.01 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 97.01 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 96.99 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 96.99 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.99 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 96.98 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 96.97 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 96.97 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 96.97 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 96.96 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 96.96 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 96.95 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.95 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 96.95 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 96.94 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 96.94 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 96.94 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.93 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.93 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.93 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.93 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 96.92 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 96.92 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 96.91 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.91 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 96.9 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 96.9 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 96.89 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 96.89 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.89 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.89 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.89 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.86 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 96.86 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 96.86 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 96.86 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.86 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 96.83 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 96.82 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.82 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.82 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.81 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.81 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.81 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.8 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.78 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 96.78 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.77 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 96.77 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.76 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.75 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 96.75 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.74 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 96.74 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.71 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 96.71 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 96.7 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.7 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.68 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.68 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 96.68 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.67 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 96.66 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.65 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 96.63 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.63 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 96.63 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.62 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.62 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.61 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 96.61 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.6 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 96.6 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 96.6 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.6 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 96.59 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 96.59 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.57 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 96.55 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.53 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.53 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.52 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.52 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.49 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.48 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.48 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 96.47 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.47 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.44 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.44 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.42 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.42 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.41 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.4 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.4 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.39 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.38 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 96.38 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.37 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.37 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.36 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 96.35 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.35 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.34 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.31 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.3 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.27 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.27 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.26 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.24 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.23 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.22 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.21 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.21 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.21 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 96.2 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.17 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.15 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 96.14 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.13 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.12 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.09 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.08 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.05 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.04 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.04 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 96.04 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.03 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.02 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.01 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.0 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.0 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 96.0 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.0 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 95.99 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 95.98 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 95.97 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 95.97 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 95.97 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 95.97 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 95.95 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.94 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.93 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 95.93 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 95.91 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 95.88 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 95.87 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 95.87 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 95.84 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 95.84 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 95.83 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.83 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.83 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 95.83 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 95.81 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.8 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 95.78 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 95.78 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 95.77 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 95.77 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.76 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 95.73 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 95.73 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.72 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 95.71 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 95.7 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 95.7 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 95.66 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.66 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 95.63 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 95.62 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 95.61 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.61 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.6 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 95.59 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 95.59 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 95.57 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 95.55 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 95.55 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 95.54 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 95.53 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.52 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 95.52 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 95.5 |
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=239.54 Aligned_cols=164 Identities=29% Similarity=0.522 Sum_probs=138.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
++++||+|+|++|||||||+++|+.+.|...+.||.+..+ .....+++..+.+++|||+|+++|..++..+++++++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 5679999999999999999999999999999999987554 566778899999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||++++++++.+.. |+..+... .+++|++||+||+|+... +.+..++++++++.++ ++|++||
T Consensus 91 lv~di~~~~Sf~~i~~-~~~~i~~~~~~~~piilVgNK~Dl~~~------------r~V~~~e~~~~a~~~~-~~~~e~S 156 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTK-WIDDVRTERGSDVIIMLVGNKTDLADK------------RQVSIEEGERKAKELN-VMFIETS 156 (216)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEEEB
T ss_pred EEeecchhHHHHHHHH-HHHHHHHhcCCCCeEEEEeeccchHhc------------CcccHHHHhhHHHHhC-CeeEEEe
Confidence 9999999999999985 77777654 578999999999999776 6688999999999999 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|+.|++.+..
T Consensus 157 Aktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 157 AKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TTTTBSHHHHHHHHHHHC--
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999988753
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=224.84 Aligned_cols=180 Identities=54% Similarity=1.002 Sum_probs=153.7
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
|++++.+||+++|++|+|||||+++|.++.+...+.+|....+...+.+++..+.+.+||+||++.+..++..+++++|+
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 83 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence 67788999999999999999999999999888888888887777777788888999999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+|+|||+++++++..+...|+..+....+++|+++|+||+|+........ ...+.+..+++..++..++..+++++
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLA----DHTNVITSTQGEELRKQIGAAAYIEC 159 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHH----TCSSCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccc----cccCCCCHHHHHHHHHHcCCceEEEc
Confidence 99999999999999987669999988778999999999999976543111 01234567888899999986699999
Q ss_pred ccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
||++|.|++++|++|.+.+.+...
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHCC--
T ss_pred cCCCCCCHHHHHHHHHHHHhhhhh
Confidence 999999999999999998876554
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-39 Score=223.71 Aligned_cols=181 Identities=31% Similarity=0.456 Sum_probs=143.1
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
|...+.+||+|+|.+|||||||+++|+++.+...+.+|....+.....+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 44567899999999999999999999999988888888887776667777888999999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
+++|||+++++++..+.. |+..+... ..++|+++|+||+|+... +.+..++...++..++ ++++
T Consensus 99 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~ 164 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVGNKADLSPE------------REVQAVEGKKLAESWG-ATFM 164 (201)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHC-----CCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEE
T ss_pred EEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccCccc------------cccCHHHHHHHHHHhC-CeEE
Confidence 999999999999998874 77777654 357899999999999765 4477788899999998 6999
Q ss_pred EeccCCcccHHHHHHHHHHHHcCCCccccCCCceeeC
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRPEPVKRRQRKCVII 195 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~~~~~c~~~ 195 (195)
++||++|.|++++|.+|.+.+.+......++++|.||
T Consensus 165 ~~Sa~~~~~v~~l~~~l~~~i~~~~~~~~~~~~c~l~ 201 (201)
T 3oes_A 165 ESSARENQLTQGIFTKVIQEIARVENSYGQERRCHLM 201 (201)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHHC-------------
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhhhhhhccccccccC
Confidence 9999999999999999999999888888777889886
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=217.23 Aligned_cols=184 Identities=72% Similarity=1.266 Sum_probs=161.7
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+++.+||+++|.+|+|||||+++|+++.+...+.+|....+.....+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 57889999999999999999999999988888888887777777788999999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|||++++.++..+...|+..+....++.|+++|+||+|+...............+.+..++...+++.++..+++++||
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 99999999999998756988888877799999999999998776555555555567788888999999998669999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCccc
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPEPVK 186 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~~~~ 186 (195)
++|.|++++|++|.+.+.++..++
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~~~k 185 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLCPPPVK 185 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSCCCC--
T ss_pred CCccCHHHHHHHHHHHHhcccccC
Confidence 999999999999999998765443
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-38 Score=217.24 Aligned_cols=178 Identities=63% Similarity=1.081 Sum_probs=157.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+.+||+++|.+|||||||+++|+++.+...+.+|....+...+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 96 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 96 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEE
Confidence 56899999999999999999999998888888888777766777888889999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
||+++++++..+...|+..+....+++|+++|+||+|+...............+.+..+++..+++.++..+++++||++
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 176 (194)
T 2atx_A 97 FSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALT 176 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCC
Confidence 99999999999875698888887789999999999999877655555555555678888899999999866899999999
Q ss_pred cccHHHHHHHHHHHHcCC
Q psy10443 165 QRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~~~ 182 (195)
|.|++++|++|.+.++++
T Consensus 177 g~gi~~l~~~l~~~i~~p 194 (194)
T 2atx_A 177 QKGLKTVFDEAIIAILTP 194 (194)
T ss_dssp CTTHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999987653
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=216.80 Aligned_cols=172 Identities=46% Similarity=0.884 Sum_probs=154.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|.+|||||||+++|+++.+...+.+|.+..+.....+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 100 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL 100 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence 56799999999999999999999999988888899988887788889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||++++.++..+...|+..+....++.|+++|+||+|+..... +.+..+++..+++.++...++++||+
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGS----------DDVTKQEGDDLCQKLGCVAYIEASSV 170 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTT----------TCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCC----------CcccHHHHHHHHHhcCCCEEEEeecC
Confidence 99999999999986679999988888999999999999976422 44777889999999985459999999
Q ss_pred CcccHHHHHHHHHHHHcCCCcc
Q psy10443 164 TQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
+|.|++++|++|.+.+.+.++.
T Consensus 171 ~~~gi~~l~~~l~~~i~~~~~~ 192 (194)
T 3reg_A 171 AKIGLNEVFEKSVDCIFSNKPV 192 (194)
T ss_dssp TTBSHHHHHHHHHHHHHCSCC-
T ss_pred CCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999998876653
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-38 Score=220.15 Aligned_cols=183 Identities=38% Similarity=0.666 Sum_probs=156.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+|+|.+|||||||+++|+++.+...+.+|.+..+.....+++..+.+.+||++|++.+..++..+++++|++|+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 56799999999999999999999999998888999888877777888888999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||+++++++..+...|+..+....+++|+++|+||+|+...............+.+..+++..+++.++..+++++||+
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~ 184 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence 99999999999855569999988888999999999999987655555555555577888999999999995499999999
Q ss_pred Cccc-HHHHHHHHHHHHcCCCccc
Q psy10443 164 TQRG-LRQVFDEAVRAVLRPEPVK 186 (195)
Q Consensus 164 ~~~~-v~~~~~~l~~~~~~~~~~~ 186 (195)
+|.| ++++|.++.+.+.......
T Consensus 185 ~g~g~v~~lf~~l~~~~~~~~~~~ 208 (214)
T 3q3j_B 185 TSEKSIHSIFRTASMLCLNKPSPL 208 (214)
T ss_dssp TCHHHHHHHHHHHHHHHHC-----
T ss_pred CCcccHHHHHHHHHHHHhccCcCC
Confidence 9998 9999999999988765543
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=217.97 Aligned_cols=181 Identities=57% Similarity=1.004 Sum_probs=150.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|.+|||||||+++|+++.+...+.+|+...+.....+++..+.+.+||+||++.+..++..+++++|++++
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 97 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLL 97 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEE
Confidence 56899999999999999999999998888888888887777778889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||+++++++..+...|+..+....+++|+++|+||+|+...............+.+..++...++..++..+++++||+
T Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 177 (201)
T 2q3h_A 98 CFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSAL 177 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecC
Confidence 99999999999987569988888778999999999999987654444444444466778889999999886699999999
Q ss_pred CcccHHHHHHHHHHHHcCCCc
Q psy10443 164 TQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~~~ 184 (195)
+|.|++++|++|.+.+.+.+.
T Consensus 178 ~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 178 TQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhcccc
Confidence 999999999999998876543
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=212.54 Aligned_cols=179 Identities=44% Similarity=0.831 Sum_probs=154.1
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.+.+||+++|++|||||||+++|.++.+...+.+|....+...+.+++..+.+.+||+||++.|..++..+++++|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 46789999999999999999999999988888888887777667778888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|||+++++++..+...|+..+....++.|+++|+||+|+...............+.+..+++..+++.++.++++++||
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 163 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence 99999999999998556988888877899999999999998654433333333446678888999999988779999999
Q ss_pred C-CcccHHHHHHHHHHHHcC
Q psy10443 163 L-TQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 163 ~-~~~~v~~~~~~l~~~~~~ 181 (195)
+ ++.|++++|+.+.+.+.+
T Consensus 164 ~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 164 LQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTBHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHHhc
Confidence 9 699999999999998764
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=217.40 Aligned_cols=180 Identities=48% Similarity=0.927 Sum_probs=139.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|.+|||||||+++|+++.+...+.+|....+.....+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 36799999999999999999999998888888888877777777889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||++++.++..+...|+..+....+++|+++|+||+|+...............+.+..+++..+++.++..+++++||+
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 191 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence 99999999999987669998888778899999999999988766555555556677888899999999986699999999
Q ss_pred CcccHHHHHHHHHHHHcCCC
Q psy10443 164 TQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~~ 183 (195)
+|.|++++|++|.+.+.+.+
T Consensus 192 ~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 192 LHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999887554
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-38 Score=214.97 Aligned_cols=180 Identities=56% Similarity=1.015 Sum_probs=136.0
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
|++++.+||+++|++|+|||||+++|.++.+...+.+|....+.....+++..+.+.+||+||++++...+..+++++|+
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 82 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence 67788999999999999999999999999888888888877766666677888899999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+++|+|++++.++..+...|+..+....+++|+++|+||+|+......... ......+..+++..+++.++..+++++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~ 160 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFID--HPGAVPITTVQGEELKKLIGAPAYIEC 160 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHH--C--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccc--cccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999876699988887778999999999999765432111 122244567788899999886699999
Q ss_pred ccCCcccHHHHHHHHHHHHcCC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
||++|.|++++|++|.+.+.++
T Consensus 161 Sa~~~~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 161 SSKSQENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp CTTTCTTHHHHHHHHHHHHSCC
T ss_pred ECCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999988653
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=216.13 Aligned_cols=176 Identities=73% Similarity=1.301 Sum_probs=157.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+++|.+|||||||+++|+++.+...+.+++...+.....+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 57899999999999999999999999888888888888777778888999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||++++.++..+...|+..+....++.|+++|+||+|+...........+...+.+..++...+++.++..+++++||+
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 187 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCC
Confidence 99999999999987679999988888999999999999998877777677777777888999999999997789999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRAV 179 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~ 179 (195)
+|.|++++|++|.+.+
T Consensus 188 ~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 188 TQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TCTTHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998865
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=213.89 Aligned_cols=181 Identities=55% Similarity=0.973 Sum_probs=153.8
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.++++||+++|.+|||||||+++|.++.+...+.++....+.....+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 46789999999999999999999999988888888887776666778898999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|||++++.++..+...|+..+....++.|+++|+||+|+...............+.+..++...++..++..+++++||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 99999999999998657988888877899999999999998776655555555556678888999999998668999999
Q ss_pred CCcccHHHHHHHHHHHHcCCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~ 183 (195)
++|.|++++|++|.+.+.+++
T Consensus 182 ~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 182 KTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp TTCTTHHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999887654
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=209.16 Aligned_cols=172 Identities=27% Similarity=0.415 Sum_probs=149.1
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
|...+.+||+++|.+|||||||+++|+++.+...+.+|....+.....+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 67788999999999999999999999998888888899888777778889999999999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
+++|||+++++++..+.. |+..+... ..++|+++|+||+|+... +.+..+++..+++.++ ++++
T Consensus 81 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~ 146 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHME------------RVISYEEGKALAESWN-AAFL 146 (181)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CEEE
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhc------------ceecHHHHHHHHHHhC-CcEE
Confidence 999999999999999875 77766554 347999999999999655 4577888999999998 6899
Q ss_pred EeccCCcccHHHHHHHHHHHHcCCCccc
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRPEPVK 186 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~~~~~ 186 (195)
++||++|.|++++|++|.+.+.+.+...
T Consensus 147 ~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 174 (181)
T 3t5g_A 147 ESSAKENQTAVDVFRRIILEAEKMDGAC 174 (181)
T ss_dssp ECCTTSHHHHHHHHHHHHHHHHTC----
T ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999998776543
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-37 Score=213.98 Aligned_cols=178 Identities=44% Similarity=0.835 Sum_probs=153.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|++|||||||+++|+++.+...+.+|....+...+.+++..+.+.+||+||++.|..++..+++++|++|+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 46799999999999999999999999988888888877776667778888999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||+++++++..+...|+..+....++.|+++|+||+|+...............+.+..+++..+++.++.++++++||+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 185 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 185 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence 99999999999885569888888778999999999999976544333333334466788889999999886789999999
Q ss_pred -CcccHHHHHHHHHHHHcC
Q psy10443 164 -TQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 164 -~~~~v~~~~~~l~~~~~~ 181 (195)
++.|++++|+.+.+.+.+
T Consensus 186 ~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 186 QSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhh
Confidence 689999999999988753
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=211.40 Aligned_cols=178 Identities=57% Similarity=1.011 Sum_probs=157.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
...+||+++|.+|||||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++.+..++..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 45789999999999999999999999888888888877776667888999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||+++++++..+...|...+....++.|+++|+||+|+...............+.+..+++..+++.++..+++++||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence 99999999999986579988888778999999999999988766555555555567888889999999986689999999
Q ss_pred CcccHHHHHHHHHHHHcC
Q psy10443 164 TQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~ 181 (195)
+|.|++++|++|.+.+.+
T Consensus 183 ~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 183 TKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988754
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=210.40 Aligned_cols=177 Identities=33% Similarity=0.564 Sum_probs=143.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++++||+++|.+|||||||+++|.++.+...+.++..........+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 56899999999999999999999999888888888877777778889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||++++.++..+.. |+..+... ..+.|+++|+||+|+.. +....++...++..++ ++++++|
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~S 146 (189)
T 4dsu_A 82 VFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLPS-------------RTVDTKQAQDLARSYG-IPFIETS 146 (189)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTSSS-------------CSSCHHHHHHHHHHHT-CCEEECC
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccCcc-------------cccCHHHHHHHHHHcC-CeEEEEe
Confidence 999999999988874 77766653 35899999999999974 3366778888999888 7899999
Q ss_pred cCCcccHHHHHHHHHHHHcCCC---------ccccCCCceeeC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPE---------PVKRRQRKCVII 195 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~---------~~~~~~~~c~~~ 195 (195)
|++|.|++++|++|.+.+.+.. .+++++++|+||
T Consensus 147 a~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~ 189 (189)
T 4dsu_A 147 AKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM 189 (189)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred CCCCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence 9999999999999999876332 122333568875
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=207.59 Aligned_cols=165 Identities=21% Similarity=0.373 Sum_probs=142.3
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
.+++.+||+++|++|||||||+++|+++.+...+.+|. ..+...+.+++..+.+.+||++|++.+. +++.+|++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 35688999999999999999999999999888787874 4445778889999999999999998876 77889999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (195)
++|||++++.+++.+.. |+..+.... .++|+++|+||+|+..... +.+..+++..++..++.+++++
T Consensus 90 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~v~~~~~~~~~~~~~~~~~~e 158 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANP----------RVIDDSRARKLSTDLKRCTYYE 158 (184)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBC----------CCSCHHHHHHHHHHTTTCEEEE
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccc----------cccCHHHHHHHHHHcCCCeEEE
Confidence 99999999999999875 888887653 5799999999999953221 5577888999999998789999
Q ss_pred eccCCcccHHHHHHHHHHHHcCCC
Q psy10443 160 CSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+||++|.|++++|++|.+.+.+.+
T Consensus 159 ~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 159 TCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999887654
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-36 Score=206.91 Aligned_cols=164 Identities=32% Similarity=0.480 Sum_probs=140.5
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.+.+||+++|.+|||||||+++|+++.+...+.+|.+..+.....+++..+.+.+||+||++.+..+ ..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 46789999999999999999999999998888889988777667788999999999999999988875 56889999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC----CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC----PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
+|||+++++++..+.. |+..+.... .++|+++|+||+|+... +.+..+++.++++.++ ++++
T Consensus 97 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~ 162 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSS-YLELLALHAKETQRSIPALLLGNKLDMAQY------------RQVTKAEGVALAGRFG-CLFF 162 (187)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHHHHHCCCCCEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CEEE
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHHhhccCCCCCEEEEEECcchhhc------------CccCHHHHHHHHHHcC-CcEE
Confidence 9999999999998874 877776642 68999999999999664 4477788999999998 6999
Q ss_pred Eecc-CCcccHHHHHHHHHHHHcC
Q psy10443 159 ECSA-LTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 159 ~~Sa-~~~~~v~~~~~~l~~~~~~ 181 (195)
++|| ++|.|++++|+.|.+.+.+
T Consensus 163 e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 163 EVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp ECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred EEeecCccccHHHHHHHHHHHHhh
Confidence 9999 8999999999999988753
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=206.81 Aligned_cols=166 Identities=22% Similarity=0.295 Sum_probs=139.9
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
|.+++.+||+++|++|||||||+++|+++.+.. +.+|.+..+...+.+++..+.+.+||+||+++ ..+++++|+
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~ 75 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA 75 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence 778899999999999999999999999998865 77787776677778899999999999999987 356788999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhh----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHH----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
+++|||+++++++..+.. |+..+... .+++|+++|+||+|+..... +.+..+++..++..++.++
T Consensus 76 ~ilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~v~~~~~~~~~~~~~~~~ 144 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSP----------RVVGDARARALXADMKRCS 144 (178)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBC----------CCSCHHHHHHHHHHHSSEE
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------CcCCHHHHHHHHHhhcCCe
Confidence 999999999999998874 65555432 25899999999999953211 4577788888988886689
Q ss_pred eEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
++++||++|.|++++|++|.+.+.+.+
T Consensus 145 ~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 145 YYETXATYGLNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886543
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=210.48 Aligned_cols=164 Identities=30% Similarity=0.508 Sum_probs=145.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+|+|.+|||||||+++|.++.+...+.+|....+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 91 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 91 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence 46799999999999999999999999888888888887777777889998999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||+++++++..+.. |+..+.... .++|+++|+||+|+... +.+..+++..++..++ ++++++|
T Consensus 92 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 157 (206)
T 2bov_A 92 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRAEQWN-VNYVETS 157 (206)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEEEC
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccCcccc------------ccccHHHHHHHHHHhC-CeEEEEe
Confidence 999999999998874 877777654 48999999999999765 3466778888998888 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|.+|.+.+.+
T Consensus 158 a~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 158 AKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=202.87 Aligned_cols=164 Identities=32% Similarity=0.535 Sum_probs=143.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++++||+++|.+|||||||+++|.++.+...+.+|....+.....+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999999888888888877777677778888999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+|++++.++..+.. |+..+... .++.|+++|+||+|+... +.+..++...+++.++..+++++|
T Consensus 81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~S 147 (167)
T 1c1y_A 81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDE------------RVVGKEQGQNLARQWCNCAFLESS 147 (167)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHTTSCEEEECB
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECcccccc------------ccCCHHHHHHHHHHccCCcEEEec
Confidence 999999999998875 76666553 468999999999999765 446677888899888558999999
Q ss_pred cCCcccHHHHHHHHHHHHc
Q psy10443 162 ALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~ 180 (195)
|++|.|++++|++|.+.+.
T Consensus 148 a~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 148 AKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp TTTTBSHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998774
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=203.83 Aligned_cols=169 Identities=31% Similarity=0.564 Sum_probs=145.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|.+..+...+.++....+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 4579999999999999999999999888777777765443 456778898899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|+|++++.++..+. .|+..+....++.|+++|+||+|+... +.+..++...++...+ ++++++||
T Consensus 87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 152 (181)
T 3tw8_B 87 VVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPER------------KVVETEDAYKFAGQMG-IQLFETSA 152 (181)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHCTTSEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CCEEECBT
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCCCchh------------cccCHHHHHHHHHHcC-CeEEEEEC
Confidence 999999999999987 488888888889999999999998765 4466778888999888 68999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCccc
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPEPVK 186 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~~~~ 186 (195)
++|.|++++|++|.+.+.+.+.+.
T Consensus 153 ~~~~gi~~l~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 153 KENVNVEEMFNCITELVLRAKKDN 176 (181)
T ss_dssp TTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999887665543
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-36 Score=202.07 Aligned_cols=165 Identities=31% Similarity=0.512 Sum_probs=142.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+++.+||+++|.+|+|||||+++|.++.+...+.++....+.....+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 1 S~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 46789999999999999999999999988888888887777777788899899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+|+|+++++++..+.. |+..+.... .+.|+++|+||+|+... +.+..+++..++..++ ++++++
T Consensus 81 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 146 (168)
T 1u8z_A 81 CVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRADQWN-VNYVET 146 (168)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEEC
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECcccccc------------CccCHHHHHHHHHHcC-CeEEEe
Confidence 9999999999998874 777776653 48999999999999765 3366778888888888 689999
Q ss_pred ccCCcccHHHHHHHHHHHHcC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
||++|.|++++|++|.+.+.+
T Consensus 147 Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 147 SAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp CTTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998754
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-36 Score=205.63 Aligned_cols=168 Identities=28% Similarity=0.559 Sum_probs=116.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
...+||+++|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4579999999999999999999999888777777775544 356677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+.. |+..+... .+++|+++|+||+|+... +.+..+++..+++.++ ++++++|
T Consensus 86 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 151 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRN-WIRNIEEHASADVEKMILGNKCDVNDK------------RQVSKERGEKLALDYG-IKFMETS 151 (183)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEEC--CCSC------------CCSCHHHHHHHHHHHT-CEEEECC
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECccCCcc------------CcCCHHHHHHHHHHcC-CeEEEEe
Confidence 9999999999998875 88777765 468999999999999765 3466778889999888 6999999
Q ss_pred cCCcccHHHHHHHHHHHHcCCCcc
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
|++|.|++++|.+|.+.+.+...+
T Consensus 152 a~~~~~i~~l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 152 AKANINVENAFFTLARDIKAKMDK 175 (183)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999988765443
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=202.03 Aligned_cols=164 Identities=34% Similarity=0.516 Sum_probs=146.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|.+|||||||+++|+++.+...+.++....+.....+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 95 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999999888888888887777778889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||+++++++..+.. |+..+... ..++|+++|+||+|+... +.+..++++.+++.++ ++++++|
T Consensus 96 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 161 (183)
T 3kkq_A 96 VYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHL------------RKVTRDQGKEMATKYN-IPYIETS 161 (183)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTT------------CCSCHHHHHHHHHHHT-CCEEEEB
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCCchhc------------cCcCHHHHHHHHHHhC-CeEEEec
Confidence 999999999998874 77766542 468999999999999764 4577888999999998 7899999
Q ss_pred cC-CcccHHHHHHHHHHHHcC
Q psy10443 162 AL-TQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~-~~~~v~~~~~~l~~~~~~ 181 (195)
|+ +|.|++++|++|.+.+.+
T Consensus 162 a~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 162 AKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp CSSSCBSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhh
Confidence 99 999999999999998754
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=198.17 Aligned_cols=165 Identities=27% Similarity=0.565 Sum_probs=135.5
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
..+.+||+++|++|+|||||+++|++..+...+.++....+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45789999999999999999999999888777777775544 35666788889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
++|+|++++.++..+. .|+..+... .+++|+++|+||+|+... +.+..++...+++.++ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 148 (170)
T 1z08_A 83 ILVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKE------------RHVSIQEAESYAESVG-AKHYHT 148 (170)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEE
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccc------------cccCHHHHHHHHHHcC-CeEEEe
Confidence 9999999999998887 487777654 357999999999999765 3466778888999888 789999
Q ss_pred ccCCcccHHHHHHHHHHHHcC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
||++|.|++++|++|.+.+.+
T Consensus 149 Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 149 SAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp BTTTTBSHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999998754
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=199.88 Aligned_cols=165 Identities=27% Similarity=0.335 Sum_probs=128.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcc--ccccCCCCCCCccEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED--YDRLRPLSYPQTDVF 81 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~--~~~~~~~~~~~~d~~ 81 (195)
++.+||+++|++|||||||+++|.+..+...+..+..+.....+.+++..+.+.+||+||++. +..+...+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 578999999999999999999999987654443333333355667888989999999999987 566677889999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (195)
++|||++++.++..+.. |+..+... .+++|+++|+||+|+... +.+..++.+.++..++ +++++
T Consensus 82 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~ 147 (175)
T 2nzj_A 82 VIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKADLARC------------REVSVEEGRACAVVFD-CKFIE 147 (175)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHCC----CCEEEEEECTTCTTT------------CCSCHHHHHHHHHHHT-SEEEE
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhhccCCCCEEEEEEChhhccc------------cccCHHHHHHHHHHcC-CeEEE
Confidence 99999999999998874 77766654 357999999999999765 3466677888888888 79999
Q ss_pred eccCCcccHHHHHHHHHHHHcCC
Q psy10443 160 CSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+||++|.|++++|++|.+.+...
T Consensus 148 ~Sa~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 148 TSATLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999988643
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=205.46 Aligned_cols=167 Identities=26% Similarity=0.449 Sum_probs=137.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++++..++..+++++|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 4568999999999999999999999888777777765544 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||++++++++.+. .|+..+.... .++|+++|+||+|+... +.+..+++.+++..++..+++++|
T Consensus 107 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~~~~~~~~S 173 (201)
T 2hup_A 107 LAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLSEL------------REVSLAEAQSLAEHYDILCAIETS 173 (201)
T ss_dssp EEEETTBHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCccccc------------cccCHHHHHHHHHHcCCCEEEEEe
Confidence 999999999999887 4888777654 68999999999999764 446778888999998844899999
Q ss_pred cCCcccHHHHHHHHHHHHcCCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~ 183 (195)
|++|.|++++|++|.+.+.+..
T Consensus 174 A~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 174 AKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999887543
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=200.26 Aligned_cols=167 Identities=32% Similarity=0.563 Sum_probs=145.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+++|.+|||||||+++|+++.+...+.+|+...+.....+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL 86 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEE
Confidence 56799999999999999999999999888888888887777778889998999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHH-hhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPEL-KHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~-~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+|++++.++..+.. |+..+ ... ..+.|+++|+||+|+... +.+..++...++...+ ++++++|
T Consensus 87 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 152 (181)
T 2fn4_A 87 VFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQ------------RQVPRSEASAFGASHH-VAYFEAS 152 (181)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECB
T ss_pred EEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc------------cccCHHHHHHHHHHcC-CeEEEec
Confidence 999999999998875 66665 333 358999999999999765 3466777888888887 6999999
Q ss_pred cCCcccHHHHHHHHHHHHcCCCc
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
|++|.|++++|++|.+.+.+.++
T Consensus 153 a~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 153 AKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999998875544
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=204.74 Aligned_cols=168 Identities=32% Similarity=0.494 Sum_probs=143.6
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
|..++.+||+++|.+|||||||+++|+++.+...+.+|....+...+.+++..+.+.+||+||++. ...+..+++.+|+
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 445678999999999999999999999998888888888777777778899999999999999988 7777888899999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
+++|||+++++++..+.. |+..+... ..++|+++|+||+|+... +.+..+++..+++.++ ++++
T Consensus 102 iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~ 167 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHS------------RQVSTEEGEKLATELA-CAFY 167 (196)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-SEEE
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhhCCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHhC-CeEE
Confidence 999999999999998874 77766653 358999999999999765 3466778888998887 7999
Q ss_pred EeccCCcc-cHHHHHHHHHHHHcCCC
Q psy10443 159 ECSALTQR-GLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 159 ~~Sa~~~~-~v~~~~~~l~~~~~~~~ 183 (195)
++||++|. |++++|++|.+.+.+.+
T Consensus 168 ~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 168 ECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp ECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred EECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 99999999 99999999999886543
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=201.37 Aligned_cols=168 Identities=26% Similarity=0.427 Sum_probs=140.7
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeec-cceeEEeCC-EEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDG-IPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~-~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
.++.+||+++|++|||||||+++|+++.+...+.+|.+.. ....+.+++ ..+.+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 5678999999999999999999999988776666776433 345566665 67899999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhhC---CCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHHC---PDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
+++|+|+++++++..+. .|+..+.... .+.| +++|+||+|+... +.+..++...+++.++ ++
T Consensus 83 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~ 148 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLE-DWYTVVKKVSEESETQPLVALVGNKIDLEHM------------RTIKPEKHLRFCQENG-FS 148 (178)
T ss_dssp EEEEEETTCHHHHHTHH-HHHHHHHHHHHHHTCCCEEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CE
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHHhcccCCCCeEEEEEEccccccc------------cccCHHHHHHHHHHcC-Cc
Confidence 99999999999998887 4877776532 2455 8999999999764 3466778888988888 79
Q ss_pred eEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++++||++|.|++++|++|.+.+.+...
T Consensus 149 ~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 149 SHFVSAKTGDSVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999998876543
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=198.39 Aligned_cols=163 Identities=33% Similarity=0.555 Sum_probs=141.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
|+++||+++|++|+|||||+++|.++.+...+.++..........+++..+.+.+||+||++.+..++..+++++|++++
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 46899999999999999999999999888888888877667777889999999999999999999888889999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+|++++.++..+.. |...+... ..+.|+++|+||+|+... +.+..++...++..++ ++++++|
T Consensus 81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 146 (167)
T 1kao_A 81 VYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESE------------REVSSSEGRALAEEWG-CPFMETS 146 (167)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-SCEEEEC
T ss_pred EEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCccccc------------ccCCHHHHHHHHHHhC-CCEEEec
Confidence 999999999988875 66555543 358999999999998754 3466777888888887 6899999
Q ss_pred cCCcccHHHHHHHHHHHHc
Q psy10443 162 ALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~ 180 (195)
|++|.|++++|++|.+.+.
T Consensus 147 a~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 147 AKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHh
Confidence 9999999999999998764
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=206.35 Aligned_cols=166 Identities=26% Similarity=0.492 Sum_probs=141.4
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
....++|+++|.+|||||||+++|.++.+...+.++....+......++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 35689999999999999999999999888777778877666666777888899999999999999988888999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH---CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (195)
+|||++++.++..+.. |+..+... .++.|+++|+||+|+... .+..++...++..++ +++++
T Consensus 85 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~-~~~~~ 149 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQR-------------EVDTREAQAVAQEWK-CAFME 149 (199)
T ss_dssp EEEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSSC-------------SSCHHHHHHHHHHHT-CEEEE
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCcc-------------ccCHHHHHHHHHHhC-CeEEE
Confidence 9999999999988774 55555443 357899999999998752 255677788888888 68999
Q ss_pred eccCCcccHHHHHHHHHHHHcCCC
Q psy10443 160 CSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+||++|.|++++|++|.+.+.+.+
T Consensus 150 ~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 150 TSAKMNYNVKELFQELLTLETRRN 173 (199)
T ss_dssp CBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred EecCCCCCHHHHHHHHHHHHhhhh
Confidence 999999999999999999876553
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=203.98 Aligned_cols=167 Identities=26% Similarity=0.483 Sum_probs=136.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
...+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 4568999999999999999999999988777777765544 345677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||++++.++..+.. |+..+... ..++|+++|+||+|+... +.+..+++..++...+ ++++++|
T Consensus 91 lV~D~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 156 (223)
T 3cpj_B 91 IVYDISKSSSYENCNH-WLSELRENADDNVAVGLIGNKSDLAHL------------RAVPTEESKTFAQENQ-LLFTETS 156 (223)
T ss_dssp EEEC-CCHHHHHHHHH-HHHHHHHHCC--CEEEEEECCGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEEeCCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 9999999999998874 88877765 357999999999999764 3466778888888887 7999999
Q ss_pred cCCcccHHHHHHHHHHHHcCCCc
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
|++|.|++++|++|.+.+.+...
T Consensus 157 a~~~~gi~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 157 ALNSENVDKAFEELINTIYQKVS 179 (223)
T ss_dssp CC-CCCHHHHHHHHHHHHTTCC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999876544
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=197.07 Aligned_cols=165 Identities=26% Similarity=0.494 Sum_probs=141.2
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
+++.+||+++|.+|+|||||+++|+++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45789999999999999999999999888776767765544 45567788889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
++|+|++++.++..+.. |+..+... .+++|+++|+||+|+... +.+..++...++...+ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 148 (170)
T 1r2q_A 83 IVVYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLANK------------RAVDFQEAQSYADDNS-LLFMET 148 (170)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEC
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCccc------------cccCHHHHHHHHHHcC-CeEEEE
Confidence 99999999999988874 77766654 568999999999999654 3366677888888887 789999
Q ss_pred ccCCcccHHHHHHHHHHHHcC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
||++|.|++++|++|.+.+.+
T Consensus 149 Sa~~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 149 SAKTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp CTTTCTTHHHHHHHHHHTSCC
T ss_pred eCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999987653
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=196.77 Aligned_cols=164 Identities=31% Similarity=0.546 Sum_probs=142.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+++|.+|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 5689999999999999999999999888777777765443 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|+|++++.++..+.. |+..+....++.|+++|+||+|+... +.+..+++..+++.++ ++++++||
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 148 (168)
T 1z2a_A 83 LVFSTTDRESFEAISS-WREKVVAEVGDIPTALVQNKIDLLDD------------SCIKNEEAEGLAKRLK-LRFYRTSV 148 (168)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHHCSCCEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CEEEECBT
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECcccCcc------------cccCHHHHHHHHHHcC-CeEEEEec
Confidence 9999999999988875 87777665578999999999999765 3366778888888888 69999999
Q ss_pred CCcccHHHHHHHHHHHHcC
Q psy10443 163 LTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~ 181 (195)
++|.|++++|++|.+.+.+
T Consensus 149 ~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 149 KEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TTTBSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999988754
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=196.61 Aligned_cols=167 Identities=34% Similarity=0.629 Sum_probs=133.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
.+.+||+++|.+|+|||||+++|++..+. ..+.++....+. ....+++..+.+.+||+||++.+...+..+++++|++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 56899999999999999999999998874 456666655543 4457788889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
++|+|++++.++..+.. |+..+.... .+.|+++|+||+|+... +.+..++...+++.++ ++++++
T Consensus 88 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 153 (180)
T 2g6b_A 88 LLLYDVTNKASFDNIQA-WLTEIHEYAQHDVALMLLGNKVDSAHE------------RVVKREDGEKLAKEYG-LPFMET 153 (180)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECCSTTSC------------CCSCHHHHHHHHHHHT-CCEEEC
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccCcc------------cccCHHHHHHHHHHcC-CeEEEE
Confidence 99999999999988874 877777654 68999999999999765 3466777888888888 689999
Q ss_pred ccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
||++|.|++++|++|.+.+.+.+.
T Consensus 154 Sa~~~~gi~~l~~~l~~~~~~~~~ 177 (180)
T 2g6b_A 154 SAKTGLNVDLAFTAIAKELKRRSM 177 (180)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC---
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999998876543
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=201.19 Aligned_cols=167 Identities=28% Similarity=0.567 Sum_probs=142.9
Q ss_pred CCC--CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCC
Q psy10443 1 MSS--GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQ 77 (195)
Q Consensus 1 m~~--~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~ 77 (195)
|+. .+.+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 653 4579999999999999999999999988777777775554 3566778888999999999999999999999999
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
+|++|+|+|++++.++..+.. |+..+.... ++.|+++|+||+|+... +.+..++...++...+ ++
T Consensus 81 ~d~vilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~ 146 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGVKM-WLQEIDRYATSTVLKLLVGNKCDLKDK------------RVVEYDVAKEFADANK-MP 146 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CC
T ss_pred CCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCccc------------cccCHHHHHHHHHHcC-Ce
Confidence 999999999999999998875 887777653 67999999999999765 3466777888888887 68
Q ss_pred eEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
++++||++|.|++++|.+|.+.+.+
T Consensus 147 ~~~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 147 FLETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999997753
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=202.55 Aligned_cols=165 Identities=30% Similarity=0.503 Sum_probs=144.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+|+|.+|+|||||+++|++..+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 56799999999999999999999999888888888877777777888988999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||+++++++..+.. |+..+.... .++|+++|+||+|+... +.+..+++..+++.++ ++++++|
T Consensus 96 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 161 (187)
T 2a9k_A 96 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRAEQWN-VNYVETS 161 (187)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHCCTTCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc------------CccCHHHHHHHHHHcC-CeEEEeC
Confidence 999999999988874 777766653 38999999999999765 3466778888998888 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|+++.|++++|++|.+.+.+.
T Consensus 162 a~~~~gi~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 162 AKTRANVDKVFFDLMREIRAR 182 (187)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999988653
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=195.51 Aligned_cols=163 Identities=26% Similarity=0.358 Sum_probs=118.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+.+||+++|++|||||||+++|.+.... ...++.+..+.....+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 3589999999999999999999976543 333444444556677899999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
||+++++++..+.. |+..+... .+++|+++|+||+|+... +.+..++...++...+ ++++++||
T Consensus 80 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 145 (166)
T 3q72_A 80 YSVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRS------------REVSVDEGRACAVVFD-CKFIETSA 145 (166)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSS------------CCSCHHHHHHHHHHTT-CEEEECBG
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccccccc------------cccCHHHHHHHHHHhC-CcEEEecc
Confidence 99999999998875 66666554 368999999999999765 4477788888999888 79999999
Q ss_pred CCcccHHHHHHHHHHHHcCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~ 182 (195)
++|.|++++|++|.+.+.+.
T Consensus 146 ~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 146 ALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp GGTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999987643
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=199.04 Aligned_cols=167 Identities=32% Similarity=0.519 Sum_probs=134.2
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.++++||+++|.+|||||||+++|+++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 46789999999999999999999999888777888887777777788899999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+|+|++++.++..+. .|+..+.... .++|+++|+||+|+... ....+++.+++..++ ++++++
T Consensus 98 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~-~~~~~~ 162 (190)
T 3con_A 98 CVFAINNSKSFADIN-LYREQIKRVKDSDDVPMVLVGNKCDLPTR-------------TVDTKQAHELAKSYG-IPFIET 162 (190)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSCC-------------CSCHHHHHHHHHHHT-CCEEEC
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCcCCcc-------------cCCHHHHHHHHHHcC-CeEEEE
Confidence 999999999998886 4777776643 47999999999998652 255677888888888 689999
Q ss_pred ccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
||++|.|++++|++|.+.+.+.+.
T Consensus 163 Sa~~~~gi~~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 163 SAKTRQGVEDAFYTLVREIRQYRM 186 (190)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998875443
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=202.31 Aligned_cols=165 Identities=25% Similarity=0.499 Sum_probs=142.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+++|.+|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3568999999999999999999999988777777765443 456778898899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.+..+++..++...+ ++++++|
T Consensus 104 ~v~D~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 169 (201)
T 2ew1_A 104 LTYDITCEESFRCLPE-WLREIEQYASNKVITVLVGNKIDLAER------------REVSQQRAEEFSEAQD-MYYLETS 169 (201)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CCEEECC
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 9999999999988874 888777653 57999999999999754 3466778888888887 7899999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|++++|.+|.+.+.+.
T Consensus 170 a~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 170 AKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988654
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-34 Score=196.98 Aligned_cols=164 Identities=32% Similarity=0.566 Sum_probs=141.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
...+||+|+|.+|+|||||+++|++..+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 3568999999999999999999999888777777765444 345567888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+.. |+..+.... ++.|+++|+||+|+... +.+..++.+.+++.++ ++++++|
T Consensus 100 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 165 (189)
T 2gf9_A 100 LMYDIANQESFAAVQD-WATQIKTYSWDNAQVILVGNKCDLEDE------------RVVPAEDGRRLADDLG-FEFFEAS 165 (189)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEECB
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CeEEEEE
Confidence 9999999999988874 887777654 68999999999999764 3466678888999888 6999999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|++|.+.+.+
T Consensus 166 a~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 166 AKENINVKQVFERLVDVICE 185 (189)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998754
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=196.93 Aligned_cols=167 Identities=30% Similarity=0.520 Sum_probs=141.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
++.+||+++|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 4679999999999999999999999888777666665444 445667888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+.. |+..+... .+++|+++|+||+|+... +.+..+++..+++..+ ++++++|
T Consensus 90 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~i~v~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 155 (181)
T 2efe_B 90 IVFDVTNQASFERAKK-WVQELQAQGNPNMVMALAGNKSDLLDA------------RKVTAEDAQTYAQENG-LFFMETS 155 (181)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCccccc------------ccCCHHHHHHHHHHcC-CEEEEEE
Confidence 9999999999988874 77777665 368999999999999764 3466778888998887 7899999
Q ss_pred cCCcccHHHHHHHHHHHHcCCCc
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
|++|.|++++|++|.+.+.+..+
T Consensus 156 a~~g~gi~~l~~~l~~~~~~~~~ 178 (181)
T 2efe_B 156 AKTATNVKEIFYEIARRLPRVQP 178 (181)
T ss_dssp SSSCTTHHHHHHHHHHTCC----
T ss_pred CCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999998866543
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=198.47 Aligned_cols=167 Identities=30% Similarity=0.555 Sum_probs=127.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeC-CEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVD-GIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
.+.+||+++|.+|+|||||+++|++..+...+.++.+..+ ...+.++ +..+.+.+||+||++.+...+..+++.+|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 5689999999999999999999999888777777765443 3445555 5668889999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhC-----CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHC-----PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
++|+|++++.++..+.. |+..+.... .+.|+++|+||+|+.... +.+..+++..++......+
T Consensus 86 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~v~~~~~~~~~~~~~~~~ 153 (182)
T 1ky3_A 86 VLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESK-----------KIVSEKSAQELAKSLGDIP 153 (182)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG-----------CCSCHHHHHHHHHHTTSCC
T ss_pred EEEEECCChHHHHHHHH-HHHHHHHHhcccCcCCCcEEEEEECCcccccc-----------ccCCHHHHHHHHHhcCCCe
Confidence 99999999999988874 776665432 679999999999996432 3356777888888666689
Q ss_pred eEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++++||++|.|++++|++|.+.+.+.
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 154 LFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999987654
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=194.31 Aligned_cols=164 Identities=26% Similarity=0.487 Sum_probs=142.5
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
.++.+||+++|.+|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45789999999999999999999999988777777775554 45567788889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
++|+|++++.++..+. .|+..+... .++.|+++|+||+|+... +.+..++...++..++ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~iilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~ 148 (170)
T 1z0j_A 83 IIVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTDV------------REVMERDAKDYADSIH-AIFVET 148 (170)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHSCTTSEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEEC
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECCccccc------------cccCHHHHHHHHHHcC-CEEEEE
Confidence 9999999999998886 488877765 578999999999999765 3366778888888888 799999
Q ss_pred ccCCcccHHHHHHHHHHHHc
Q psy10443 161 SALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~ 180 (195)
||++|.|++++|++|.+.+.
T Consensus 149 Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 149 SAKNAININELFIEISRRIP 168 (170)
T ss_dssp BTTTTBSHHHHHHHHHHHCC
T ss_pred eCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999998765
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=201.48 Aligned_cols=166 Identities=26% Similarity=0.379 Sum_probs=133.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcc-ccccCCCCCCCccE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED-YDRLRPLSYPQTDV 80 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~-~~~~~~~~~~~~d~ 80 (195)
.+.+||+++|++|||||||+++|++.. +...+.++..+.+...+.+++..+.+.+||++|++. +..+...+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 356899999999999999999999643 344444444444556677899999999999999876 55667788999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
+|+|||++++++++.+.. |...+... .+++|+++|+||+|+... +.+..++.+.++..++ ++++
T Consensus 115 ~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~------------r~v~~~e~~~~a~~~~-~~~~ 180 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRC------------REVSVSEGRACAVVFD-CKFI 180 (211)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEE
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcC------------ceEeHHHHHHHHHHcC-CEEE
Confidence 999999999999998875 76666542 357999999999999754 4466677788888887 6899
Q ss_pred EeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
++||++|.|++++|++|.+.+...+
T Consensus 181 e~SAk~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 181 ETSAAVQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999886443
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=199.48 Aligned_cols=165 Identities=29% Similarity=0.554 Sum_probs=139.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 4579999999999999999999999888776667665444 356677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++++++.+.. |+..+... .++.|+++|+||+|+... +.+..++...+++.++ ++++++|
T Consensus 99 ~v~d~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 164 (191)
T 2a5j_A 99 LVYDITRRETFNHLTS-WLEDARQHSSSNMVIMLIGNKSDLESR------------RDVKREEGEAFAREHG-LIFMETS 164 (191)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEEEC
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccCCc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 9999999999998875 87777665 468999999999999764 3466778888998888 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|++++|++|.+.+.+.
T Consensus 165 a~~~~gi~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 165 AKTACNVEEAFINTAKEIYRK 185 (191)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988654
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=196.69 Aligned_cols=164 Identities=27% Similarity=0.529 Sum_probs=141.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|+++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 4579999999999999999999999988777777765544 455677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+.. |+..+.... ++.|+++|+||+|+... +.+..++++++++.++ ++++++|
T Consensus 93 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 158 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSS-WLTDARNLTNPNTVIILIGNKADLEAQ------------RDVTYEEAKQFAEENG-LLFLEAS 158 (179)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEEeCcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 9999999999988874 877776653 68999999999999654 3466778888998888 7999999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|++|.+.+.+
T Consensus 159 a~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 159 AKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TTTCTTHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999998764
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=197.62 Aligned_cols=166 Identities=27% Similarity=0.475 Sum_probs=142.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|++..+...+.++....+ ...+.+++..+.+.+||+||++.+...+..+++++|++|
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999888777777765443 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+.. |+..+... ..++|+++|+||+|+... +.+..++...++...+ ++++++|
T Consensus 88 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 153 (186)
T 2bme_A 88 LVYDITSRETYNALTN-WLTDARMLASQNIVIILCGNKKDLDAD------------REVTFLEASRFAQENE-LMFLETS 153 (186)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEec
Confidence 9999999999988874 77776654 468999999999999654 3466678888888888 7999999
Q ss_pred cCCcccHHHHHHHHHHHHcCCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~ 183 (195)
|++|.|++++|+++.+.+.+..
T Consensus 154 a~~~~gi~~l~~~l~~~~~~~~ 175 (186)
T 2bme_A 154 ALTGENVEEAFVQCARKILNKI 175 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999887543
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-34 Score=194.92 Aligned_cols=165 Identities=33% Similarity=0.559 Sum_probs=138.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+++|.+|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 5689999999999999999999999888777777775544 556678888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-----CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-----PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
+|+|++++.++..+.. |+..+.... .+.|+++|+||+|+.. +.+..+++..++.....+++
T Consensus 85 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~ 150 (177)
T 1wms_A 85 LTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDISE-------------RQVSTEEAQAWCRDNGDYPY 150 (177)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCSS-------------CSSCHHHHHHHHHHTTCCCE
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHHccccccCCCcEEEEEECCcccc-------------cccCHHHHHHHHHhcCCceE
Confidence 9999999999988864 777765532 5789999999999973 33667788888886666899
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+++||++|.|++++|++|.+.+.+.
T Consensus 151 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 151 FETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999988653
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=194.93 Aligned_cols=167 Identities=31% Similarity=0.530 Sum_probs=141.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
++.+||+++|++|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 3579999999999999999999999888777777775544 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+.. |+..+... .++.|+++|+||+|+..... .+.+..++...++...+ ++++++|
T Consensus 81 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~~~v~~~~~~~~~~~~~-~~~~~~S 149 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARH-WVKELHEQASKDIIIALVGNKIDXLQEGG---------ERKVAREEGEKLAEEKG-LLFFETS 149 (170)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGSSC---------CCCSCHHHHHHHHHHHT-CEEEECC
T ss_pred EEEecCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCCcccccc---------ccCCCHHHHHHHHHHcC-CEEEEEe
Confidence 9999999999988875 77777655 46899999999999976421 13366677888888888 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|++|.+.+.+
T Consensus 150 a~~~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 150 AKTGENVNDVFLGIGEKIPL 169 (170)
T ss_dssp TTTCTTHHHHHHHHHTTSCC
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999887643
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=194.79 Aligned_cols=163 Identities=30% Similarity=0.375 Sum_probs=126.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccce-eeccceeEEeCCEEEEEEEEeCCCCccccc-cCCCCCCCccEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQEDYDR-LRPLSYPQTDVFLI 83 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-~~~~~~~~~d~~i~ 83 (195)
.+||+++|++|||||||+++|.+..+...+.++. .......+.+++..+.+.+||+||++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 4799999999999999999999766544333333 444456677899999999999999998876 67777889999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||+++++++..+.. |+..+.... .++|+++|+||+|+.+. +.+..++...+++.++ ++++++|
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 147 (169)
T 3q85_A 82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARS------------REVSLEEGRHLAGTLS-CKHIETS 147 (169)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECB
T ss_pred EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhc------------ccCCHHHHHHHHHHcC-CcEEEec
Confidence 999999999999885 777766654 38999999999999765 4477888999999998 6999999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|++++|+++.+.+...
T Consensus 148 a~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 148 AALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp TTTTBSHHHHHHHHHHHHHHT
T ss_pred CccCCCHHHHHHHHHHHHHhc
Confidence 999999999999999987654
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=211.49 Aligned_cols=179 Identities=72% Similarity=1.267 Sum_probs=159.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
...++|+++|.+|+|||||+++|+++.+...+.+|+...+...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 35689999999999999999999999888888889888877778889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||++++.++..+...|+..+....+++|+++|+||+|+...............+.+..+++..++...+..+++++||+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 312 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence 99999999999987668888888777999999999999987665555555666677888999999999986699999999
Q ss_pred CcccHHHHHHHHHHHHcCC
Q psy10443 164 TQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~ 182 (195)
+|.|++++|+.|.+.++.+
T Consensus 313 ~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 313 TQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TCTTHHHHHHHHHHHHHC-
T ss_pred CCcCHHHHHHHHHHHHhcC
Confidence 9999999999999988754
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-34 Score=199.06 Aligned_cols=165 Identities=25% Similarity=0.475 Sum_probs=138.7
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEE--------------------------
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIP-------------------------- 53 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~-------------------------- 53 (195)
|++.+.+||+|+|.+|+|||||+++|++..+...+.+|.+..+ ...+.+++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 7888899999999999999999999999988777777775443 3344455544
Q ss_pred -----------EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCc
Q psy10443 54 -----------VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDL 122 (195)
Q Consensus 54 -----------~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~ 122 (195)
+.+.+||+||++.+...+..+++.+|++++|+|++++.++..+. .|+..+..... .|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~~-~piilv~NK~D- 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK-TWVNQLKISSN-YIIILVANKID- 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHH-HHHHHHHHHSC-CEEEEEEECTT-
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHH-HHHHHHHhhCC-CcEEEEEECCC-
Confidence 78999999999999999999999999999999999999998887 48777776543 99999999999
Q ss_pred ccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
... +.+..+++..+++..+ ++++++||++|.|++++|++|.+.+.+
T Consensus 159 ~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 159 KNK------------FQVDILEVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CC-------------CCSCHHHHHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccc------------ccCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 332 3466788889999888 699999999999999999999988764
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=198.91 Aligned_cols=168 Identities=29% Similarity=0.489 Sum_probs=141.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc--eeEEeCCE---------EEEEEEEeCCCCccccccCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS--APFTVDGI---------PVSLGLWDTAGQEDYDRLRP 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~l~~~D~~G~~~~~~~~~ 72 (195)
.+.+||+|+|.+|+|||||+++|+++.+...+.+|.+..+. ....+++. .+.+.+||+||++.+...+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 45799999999999999999999998887777777655443 34444544 78899999999999999999
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
.+++++|++|+|+|++++.++..+. .|+..+.... .++|+++|+||+|+... +.+..+++..++.
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~ 155 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIVLCGNKSDLEDQ------------RAVKEEEARELAE 155 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSSSSSCCEEEEEECTTCGGG------------CCSCHHHHHHHHH
T ss_pred HHHcCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------cccCHHHHHHHHH
Confidence 9999999999999999999999887 4887777654 58999999999999764 3366778888888
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHcCCCcc
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
.++ ++++++||++|.|++++|++|.+.+.+...+
T Consensus 156 ~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 156 KYG-IPYFETSAANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp HHT-CCEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HcC-CCEEEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 888 6899999999999999999999988765443
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=195.39 Aligned_cols=164 Identities=30% Similarity=0.534 Sum_probs=140.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeec-cceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
++++||+|+|.+|+|||||+++|++..+...+.++.... ......+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999988877777776543 3556678888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+.. |+..+... ..++|+++|+||+|+... +.+..++...++...+ ++++++|
T Consensus 92 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 157 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSK-WIDDVRTERGSDVIIMLVGNKTDLSDK------------RQVSTEEGERKAKELN-VMFIETS 157 (179)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEEEB
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCccccc------------CcCCHHHHHHHHHHcC-CeEEEEe
Confidence 9999999999988874 77666554 458999999999999765 3466777888888888 7999999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|++|.+.+.+
T Consensus 158 a~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 158 AKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TTTTBSHHHHHHHHHHTCC-
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999987654
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-34 Score=197.98 Aligned_cols=165 Identities=26% Similarity=0.452 Sum_probs=141.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 4679999999999999999999999888777777775554 344566777889999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+. .|+..+.... +++|+++|+||+|+... +.+..+++..+++.++ ++++++|
T Consensus 101 lV~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 166 (192)
T 2fg5_A 101 IVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSDI------------REVPLKDAKEYAESIG-AIVVETS 166 (192)
T ss_dssp EEEETTCTHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHTTT-CEEEECB
T ss_pred EEEeCCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 999999999999887 4888777654 57999999999999654 3466778889998888 7999999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|++++|++|.+.+.+.
T Consensus 167 a~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 167 AKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp TTTTBSHHHHHHHHHHTCC--
T ss_pred CCCCcCHHHHHHHHHHHHHhh
Confidence 999999999999999987654
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=195.85 Aligned_cols=164 Identities=26% Similarity=0.492 Sum_probs=138.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+.+||+++|.+|+|||||+++|.++.+...+.++....+......++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 57899999999999999999999988877777777766666677788889999999999999998888899999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH---CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|++++.++..+.. |+..+... .++.|+++|+||+|+... +.+..++...++..++ ++++++|
T Consensus 82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 147 (172)
T 2erx_A 82 YSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPS------------REVQSSEAEALARTWK-CAFMETS 147 (172)
T ss_dssp EETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEECB
T ss_pred EECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEccccccc------------cccCHHHHHHHHHHhC-CeEEEec
Confidence 99999999887764 65555543 357999999999999765 3356677788888887 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|++++|++|.+.+.+.
T Consensus 148 a~~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 148 AKLNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp TTTTBSHHHHHHHHHHTCCSS
T ss_pred CCCCcCHHHHHHHHHHHHhhh
Confidence 999999999999999876543
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-34 Score=197.31 Aligned_cols=166 Identities=26% Similarity=0.533 Sum_probs=144.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
..+||+|+|.+|||||||+++|++..+...+.++....+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 94 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 94 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEE
Confidence 468999999999999999999999888777777765444 4667788888999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+|++++.++..+.. |+..+... ..+.|+++|+||+|+... +.+..++...++..++ ++++++||
T Consensus 95 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 160 (196)
T 3tkl_A 95 VYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTK------------KVVDYTTAKEFADSLG-IPFLETSA 160 (196)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CCEEEECT
T ss_pred EEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccccc------------cccCHHHHHHHHHHcC-CcEEEEeC
Confidence 999999999998875 88777665 357999999999999765 4467778889999998 69999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCc
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++|.|++++|.+|.+.+.+...
T Consensus 161 ~~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 161 KNATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp TTCTTHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999998876554
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=193.29 Aligned_cols=163 Identities=33% Similarity=0.538 Sum_probs=141.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
|+++||+++|.+|+|||||+++|.+..+...+.++....+......++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 36799999999999999999999998887778888877767777888889999999999999999888889999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+|++++.++..+.. |+..+.... .+.|+++++||+|+... ....++...+++.++ ++++++|
T Consensus 81 v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~nK~Dl~~~-------------~~~~~~~~~~~~~~~-~~~~~~S 145 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLAAR-------------TVESRQAQDLARSYG-IPYIETS 145 (166)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSCC-------------CSCHHHHHHHHHHHT-CCEEEEC
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEchhhhhc-------------ccCHHHHHHHHHHcC-CeEEEec
Confidence 999999999988864 777776653 37999999999998763 245677888888888 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|+++++++|.+.+.+
T Consensus 146 a~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 146 AKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999988753
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-34 Score=198.07 Aligned_cols=164 Identities=29% Similarity=0.559 Sum_probs=141.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
...+||+|+|.+|||||||+++|++..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 4569999999999999999999999988777777765444 345667888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+.. |+..+.... .+.|+++|+||+|+... +.+..+++..++..++ ++++++|
T Consensus 86 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 151 (203)
T 1zbd_A 86 LMYDITNEESFNAVQD-WSTQIKTYSWDNAQVLLVGNKCDMEDE------------RVVSSERGRQLADHLG-FEFFEAS 151 (203)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCSSCEEEEEEECTTCTTS------------CCSCHHHHHHHHHHHT-CEEEECB
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccCcc------------cccCHHHHHHHHHHCC-CeEEEEE
Confidence 9999999999988874 887777654 68999999999999764 3466778888999888 6999999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|++|.+.+.+
T Consensus 152 a~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 152 AKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp TTTTBSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-35 Score=204.07 Aligned_cols=169 Identities=25% Similarity=0.348 Sum_probs=109.3
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcC--CCCCCccccee-eccceeEEeCCE--EEEEEEEeCCCCccccccCCCCC
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTD--SFPGEYVPTVF-DNYSAPFTVDGI--PVSLGLWDTAGQEDYDRLRPLSY 75 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~~~~~t~~-~~~~~~~~~~~~--~~~l~~~D~~G~~~~~~~~~~~~ 75 (195)
|.+++.+||+|+|.+|||||||+++|++. .+...+.+|.+ +.....+.+++. .+.+.+||+||++.+...+..++
T Consensus 15 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 94 (208)
T 2yc2_C 15 ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYW 94 (208)
T ss_dssp CSEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTC
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHH
Confidence 34456789999999999999999999998 77777778876 344566777776 88999999999999999999999
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhC----CCCcEEEEeeCCCccc-chHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC----PDAPIILVGTKIDLRE-DRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
+++|++|+|||++++.++..+. .|+..+.... .++|+++|+||+|+.. . +.+..+++..+++
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~------------~~v~~~~~~~~~~ 161 (208)
T 2yc2_C 95 NGVYYAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVANKTDLPPQR------------HQVRLDMAQDWAT 161 (208)
T ss_dssp CCCCEEEEEEETTCHHHHHHHH-HHHHHHHHHCSCTTSCCEEEEEEECC-------------------CCCHHHHHHHHH
T ss_pred hhCcEEEEEEECCCHHHHHHHH-HHHHHHHHhhcccccCCcEEEEEECcccchhh------------ccCCHHHHHHHHH
Confidence 9999999999999999999887 4888887764 4899999999999976 3 3466788899999
Q ss_pred HcCCceeEEeccCC-cccHHHHHHHHHHHHcCCC
Q psy10443 151 KIRAVKYMECSALT-QRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~-~~~v~~~~~~l~~~~~~~~ 183 (195)
.++ ++++++||++ |.|++++|++|.+.+.+..
T Consensus 162 ~~~-~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 162 TNT-LDFFDVSANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp HTT-CEEEECCC-------CHHHHHHHHHHHHHH
T ss_pred HcC-CEEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence 988 7999999999 9999999999999876544
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=199.96 Aligned_cols=166 Identities=26% Similarity=0.487 Sum_probs=133.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999999888777777765443 455677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||++++.++..+.. |+..+... .+++|+++|+||+|+... +.+..+++..++...+ ++++++|
T Consensus 103 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 168 (200)
T 2o52_A 103 LVYDITSRETYNSLAA-WLTDARTLASPNIVVILCGNKKDLDPE------------REVTFLEASRFAQENE-LMFLETS 168 (200)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHTCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEEC
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCCcccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 9999999999998874 77777654 468999999999999654 3466678888888888 7999999
Q ss_pred cCCcccHHHHHHHHHHHHcCCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~ 183 (195)
|++|.|++++|.+|.+.+.+..
T Consensus 169 A~~g~gi~~l~~~l~~~i~~~~ 190 (200)
T 2o52_A 169 ALTGENVEEAFLKCARTILNKI 190 (200)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999887543
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-34 Score=193.29 Aligned_cols=163 Identities=26% Similarity=0.588 Sum_probs=134.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
..+||+++|++|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999888777777765444 3456677888899999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+|++++.++..+.. |+..+.... ++.|+++|+||+|+.. +.+..++...+++.++ ++++++||
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa 146 (170)
T 1g16_A 82 VYDITDERTFTNIKQ-WFKTVNEHANDEAQLLLVGNKSDMET-------------RVVTADQGEALAKELG-IPFIESSA 146 (170)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCTT-------------CCSCHHHHHHHHHHHT-CCEEECBT
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCCc-------------CccCHHHHHHHHHHcC-CeEEEEEC
Confidence 999999999988874 877776654 6899999999999933 3356677888888888 68999999
Q ss_pred CCcccHHHHHHHHHHHHcCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~ 182 (195)
++|.|++++|++|.+.+.+.
T Consensus 147 ~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 147 KNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TTTBSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988654
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=200.23 Aligned_cols=171 Identities=29% Similarity=0.459 Sum_probs=134.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
..+.+||+|+|.+|||||||+++|+++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 35679999999999999999999999888777777766544 45677788889999999999999998888999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
|+|||++++.++..+.. |+..+.... .++|+++|+||+|+...... ...+.+..+++..++...+ ++++++
T Consensus 105 ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~NK~Dl~~~~~~------~~~~~v~~~~~~~~~~~~~-~~~~~~ 176 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIRE-WVDMIEDAAHETVPIMLVGNKADIRDTAAT------EGQKCVPGHFGEKLAMTYG-ALFCET 176 (199)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHC---CCEEEEEECGGGHHHHHH------TTCCCCCHHHHHHHHHHHT-CEEEEC
T ss_pred EEEEECCChHHHHHHHH-HHHHHHHhcCCCCCEEEEEECccccccccc------ccccccCHHHHHHHHHHcC-CeEEEe
Confidence 99999999999998874 888777653 57999999999999643211 1124566778888998888 699999
Q ss_pred ccCCcccHHHHHHHHHHHHcC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
||++|.|++++|.+|.+.+.+
T Consensus 177 SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 177 SAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHTC
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998764
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=199.51 Aligned_cols=166 Identities=31% Similarity=0.398 Sum_probs=135.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccce-eeccceeEEeCCEEEEEEEEeCCCCccccc-cCCCCCCCccEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQEDYDR-LRPLSYPQTDVF 81 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-~~~~~~~~~d~~ 81 (195)
...+||+|+|++|||||||+++|++......+.+++ .+.+...+.+++..+.+.+||++|++.+.. ++..+++.+|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 356899999999999999999997643322223333 333455667899999999999999988764 667788899999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (195)
|+|||+++++++..+.. |+..+.... .++|+++|+||+|+... +.+..+++..++..++ +++++
T Consensus 101 ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e 166 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARS------------REVSLEEGRHLAGTLS-CKHIE 166 (195)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CEEEE
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhcccc------------CCcCHHHHHHHHHHhC-CEEEE
Confidence 99999999999998875 877776653 48999999999999764 4467778888998888 68999
Q ss_pred eccCCcccHHHHHHHHHHHHcCCC
Q psy10443 160 CSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+||++|.|++++|++|++.+.+.+
T Consensus 167 ~Sa~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 167 TSAALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp EBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred EcCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999886543
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=199.62 Aligned_cols=165 Identities=27% Similarity=0.556 Sum_probs=135.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
...+||+|+|.+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 3568999999999999999999999887766666664433 456677888899999999999999998899999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+... +.+..++++.+++.+...+++++|
T Consensus 104 lV~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilV~NK~Dl~~~------------~~v~~~~~~~~~~~~~~~~~~~~S 170 (192)
T 2il1_A 104 LVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETD------------REITRQQGEKFAQQITGMRFCEAS 170 (192)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHTSTTCEEEECB
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHhcCCCeEEEEe
Confidence 999999999999887 4887777654 57999999999999765 346677788888886558999999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|++|.+.+.+
T Consensus 171 A~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 171 AKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988754
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=196.54 Aligned_cols=165 Identities=24% Similarity=0.437 Sum_probs=141.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|++..+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 4569999999999999999999999888777777765443 345667888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|++++.++..+.. |+..+... ..+.|+++|+||+|+... +.+..+++..++...+ ++++++|
T Consensus 103 ~v~D~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 168 (193)
T 2oil_A 103 LVFDLTKHQTYAVVER-WLKELYDHAEATIVVMLVGNKSDLSQA------------REVPTEEARMFAENNG-LLFLETS 168 (193)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHTTSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEEC
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECCCcccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 9999999999988874 77777654 368999999999999765 3366677888888887 6999999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|++++|++|.+.+.+.
T Consensus 169 a~~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 169 ALDSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987653
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-34 Score=196.68 Aligned_cols=164 Identities=30% Similarity=0.536 Sum_probs=137.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCcccc-ccCCCCCCCccE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYD-RLRPLSYPQTDV 80 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~-~~~~~~~~~~d~ 80 (195)
.++.+||+|+|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+. .++..+++++|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 35679999999999999999999999888777777765443 4566778888999999999999988 788889999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
+|+|+|++++.++..+.. |+..+... ..+.|+++|+||+|+... +.+..++.+.++..++ ++++
T Consensus 97 iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~ 162 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSA------------IQVPTDLAQKFADTHS-MPLF 162 (189)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CCEE
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc------------ceeCHHHHHHHHHHcC-CEEE
Confidence 999999999999998875 87777665 468999999999999665 3466778888998888 6899
Q ss_pred EeccCCc---ccHHHHHHHHHHHHc
Q psy10443 159 ECSALTQ---RGLRQVFDEAVRAVL 180 (195)
Q Consensus 159 ~~Sa~~~---~~v~~~~~~l~~~~~ 180 (195)
++||+++ .|++++|.+|.+.+.
T Consensus 163 ~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 163 ETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp ECCSSSGGGGSCHHHHHHHHC----
T ss_pred EEeCCcCCcccCHHHHHHHHHHHHh
Confidence 9999999 999999999988764
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-37 Score=215.09 Aligned_cols=176 Identities=73% Similarity=1.310 Sum_probs=150.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|.+|||||||+++|+++.+...+.+|+...+...+.+++..+.+.+||+||++++...+..+++++|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 57899999999999999999999998888888888877777777778888999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|+|++++.++..+...|+..+....+++|+++|+||+|+...............+.+..++...+++.++..+++++||+
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~ 187 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
Confidence 99999999999887568888887767899999999999976554333333333345666778888888885589999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRAV 179 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~ 179 (195)
+|.|++++|++|.+.+
T Consensus 188 ~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 188 TQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999998765
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=197.10 Aligned_cols=164 Identities=27% Similarity=0.538 Sum_probs=137.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 4679999999999999999999999888777777764433 455667788889999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-----CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-----PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
+|+|++++.++..+. .|+..+.... .++|+++|+||+|+.. +.+..++...++.....+++
T Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~ 151 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLEN-------------RQVATKRAQAWCYSKNNIPY 151 (207)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-------------CCSCHHHHHHHHHHTTSCCE
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcccccCCCCcEEEEEECCCCcc-------------cccCHHHHHHHHHhcCCceE
Confidence 999999999998886 4777665542 4789999999999973 33556778888875555889
Q ss_pred EEeccCCcccHHHHHHHHHHHHcC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
+++||++|.|++++|++|.+.+.+
T Consensus 152 ~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 152 FETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987753
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-35 Score=201.48 Aligned_cols=166 Identities=32% Similarity=0.549 Sum_probs=143.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
...+||+|+|.+|||||||+++|++..+...+.++.+..+ ......++..+.+.+||+||++.+..++..+++++|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 3568999999999999999999999888777777765444 345566777788999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||+++++++..+.. |+..+.... .++|+++|+||+|+... +.+..++...++..++ ++++++|
T Consensus 101 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 166 (191)
T 3dz8_A 101 LMYDITNEESFNAVQD-WATQIKTYSWDNAQVILVGNKCDMEEE------------RVVPTEKGQLLAEQLG-FDFFEAS 166 (191)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEECB
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCccc------------cccCHHHHHHHHHHcC-CeEEEEE
Confidence 9999999999998875 888887754 68999999999999765 4477788889999998 6999999
Q ss_pred cCCcccHHHHHHHHHHHHcCCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~ 183 (195)
|++|.|++++|++|.+.+.+..
T Consensus 167 a~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 167 AKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999886543
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=194.11 Aligned_cols=165 Identities=32% Similarity=0.591 Sum_probs=142.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 3579999999999999999999999988777777765444 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+|+|++++.++..+. .|+..+.... .++|+++|+||+|+.. +.+..++...+++..+ ++++++
T Consensus 93 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~ 157 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKEN-------------REVDRNEGLKFARKHS-MLFIEA 157 (195)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSS-------------CCSCHHHHHHHHHHTT-CEEEEC
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCcc-------------cccCHHHHHHHHHHcC-CEEEEe
Confidence 999999999998887 4888777653 5799999999999943 3356677888888888 689999
Q ss_pred ccCCcccHHHHHHHHHHHHcCCC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
||+++.|++++|++|.+.+.+..
T Consensus 158 Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 158 SAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHTSG
T ss_pred cCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999887654
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=198.74 Aligned_cols=164 Identities=23% Similarity=0.266 Sum_probs=131.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCc-----------ccceeecc-ceeE-EeCCEEEEEEEEeCCCCcccccc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEY-----------VPTVFDNY-SAPF-TVDGIPVSLGLWDTAGQEDYDRL 70 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~-----------~~t~~~~~-~~~~-~~~~~~~~l~~~D~~G~~~~~~~ 70 (195)
.+.+||+++|++|||||||++.+.+ .+...+ .+|.+..+ .... .+++..+.+.+||+||++.+...
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 4679999999999999999966654 444443 23443332 2223 56777889999999999999999
Q ss_pred CCCCCCCccEEEEEEeCC------ChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 71 RPLSYPQTDVFLICYSVV------SPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
+..+++++|++|+|||++ +.+++..+. .|+..+....+++|+++|+||+|+... +..++
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~-~~l~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~ 155 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMR-ENLAEYGLTLDDVPIVIQVNKRDLPDA--------------LPVEM 155 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHH-HHHHHTTCCTTSSCEEEEEECTTSTTC--------------CCHHH
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHH-HHHHhhccccCCCCEEEEEEchhcccc--------------cCHHH
Confidence 999999999999999999 456666665 377777555678999999999999664 66678
Q ss_pred HHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 145 GQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 145 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+.+++..++..+++++||++|.|++++|++|.+.+.+..
T Consensus 156 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 156 VRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp HHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 888888888448999999999999999999999887654
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-34 Score=201.34 Aligned_cols=165 Identities=30% Similarity=0.536 Sum_probs=139.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCE----------EEEEEEEeCCCCccccccCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGI----------PVSLGLWDTAGQEDYDRLRP 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~l~~~D~~G~~~~~~~~~ 72 (195)
.+.+||+|+|.+|||||||+++|++..+...+.+|....+ ...+.+++. .+.+.+||+||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 4579999999999999999999999888776677765444 334555554 78899999999999999999
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
.+++.+|++|+|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.+..+++..++.
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~------------~~v~~~~~~~~~~ 169 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQ------------REVNERQARELAD 169 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGG------------CCSCHHHHHHHHH
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCCEEEEEECCccccc------------cccCHHHHHHHHH
Confidence 99999999999999999999988874 877776543 68999999999999764 3466778888998
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.++ ++++++||+++.|++++|++|.+.+.+.
T Consensus 170 ~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 170 KYG-IPYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp HTT-CCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HCC-CcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 888 6899999999999999999999987654
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=194.32 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=125.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCC-CcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPG-EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
....||+|+|.+|||||||+++|++..+.. .+.+|.+.... . ++...+.+.+||+||++.+..++..+++++|++|
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE-T--FEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE-E--EEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE-E--EEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 467899999999999999999999998877 77777764322 2 2344567889999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh------C---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH-HHHHHc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH------C---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ-KLANKI 152 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~------~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 152 (195)
+|||+++++++..+.. |+..+... . +++|+++|+||+|+........ +...... .+++..
T Consensus 92 ~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~---------~~~~~~~~~~~~~~ 161 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKS-EIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAE---------LVEILDLTTLMGDH 161 (199)
T ss_dssp EEEETTCGGGHHHHHH-HHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHH---------HHHHHTHHHHHTTS
T ss_pred EEEECCcHHHHHHHHH-HHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHH---------HHHHhcchhhccCC
Confidence 9999999999998875 55444332 1 3899999999999976521111 1111111 111333
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHHcCCCcccc
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKR 187 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~ 187 (195)
+ ++++++||++|.|++++|++|.+.+.+...+..
T Consensus 162 ~-~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~ 195 (199)
T 4bas_A 162 P-FVIFASNGLKGTGVHEGFSWLQETASRQSGKAG 195 (199)
T ss_dssp C-EEEEECBTTTTBTHHHHHHHHHHHHHHHC----
T ss_pred e-eEEEEeeCCCccCHHHHHHHHHHHHHHHhcccC
Confidence 4 789999999999999999999999877655443
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=189.46 Aligned_cols=165 Identities=27% Similarity=0.389 Sum_probs=130.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC--CCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcc-ccccCCCCCCCccE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD--SFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED-YDRLRPLSYPQTDV 80 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~-~~~~~~~~~~~~d~ 80 (195)
++.+||+++|++|||||||+++|++. .+...+.++..+.+...+.+++..+.+.+||++|++. +..++..+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 56799999999999999999999963 3444444444444556677899999999999999876 55666778888999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
+++|||+++++++..+.. |...+... .+++|+++|+||+|+... +.+..++...++..++ ++++
T Consensus 84 ~i~v~dv~~~~s~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~------------r~v~~~~~~~~a~~~~-~~~~ 149 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRX------------REVSVSEGRAXAVVFD-XKFI 149 (192)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEE
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCeEEEEEechhhhcc------------ccccHHHHHHHHHHhC-CceE
Confidence 999999999999998874 76666543 357999999999998754 4466677778888877 6899
Q ss_pred EeccCCcccHHHHHHHHHHHHcCC
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++||++|.|++++|.++.+.+...
T Consensus 150 e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 150 ETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EeccccCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999987543
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=193.26 Aligned_cols=163 Identities=27% Similarity=0.595 Sum_probs=138.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.++|+|+|.+|||||||+++|++..+...+.++....+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 3568999999999999999999999888777777765444 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.. +.+..++...++..++ ++++++|
T Consensus 98 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~S 162 (213)
T 3cph_A 98 LVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET-------------RVVTADQGEALAKELG-IPFIESS 162 (213)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHTTTCSEEEEEEECTTCSS-------------CCSCHHHHHHHHHHHT-CCEEECB
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcc-------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 999999999998887 4877776654 4799999999999933 3356677888888888 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|.+|.+.+.+
T Consensus 163 a~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 163 AKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp TTTTBSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987754
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=200.83 Aligned_cols=164 Identities=26% Similarity=0.550 Sum_probs=131.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|++..+...+.++....+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 3569999999999999999999999888776666665444 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.+..++...++..++ ++++++|
T Consensus 111 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~vS 176 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTK------------KVVDYTTAKEFADSLG-IPFLETS 176 (199)
T ss_dssp ECC-CCCSHHHHHHHH-HHHHHHSCC-CCSEEEEC-CCSSCC--------------CCCCSCC-CHHHHTTT-CCBCCCC
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhccCCCCEEEEEECccCCcc------------ccCCHHHHHHHHHHcC-CeEEEEE
Confidence 9999999999999875 888877654 47999999999999765 3345556777888887 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|++|.+.+.+
T Consensus 177 A~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 177 AKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp C---HHHHHHHHHHTTTTTT
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887754
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=190.16 Aligned_cols=157 Identities=21% Similarity=0.328 Sum_probs=118.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+++||+++|++|||||||+++|.++.+. .+.+|.... ...+.+++ +.+.+||+||++.++..+..+++++|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 56789999999999999999999988763 455665443 34566676 677799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH----------
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK---------- 151 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 151 (195)
|+|+++++++..+.. |+..+... ..++|+++|+||+|+... +..+++.++...
T Consensus 99 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 163 (198)
T 1f6b_A 99 LVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPEA--------------ISEERLREMFGLYGQTTGKGSV 163 (198)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTTC--------------CCHHHHHHHHTCTTTCCCSSCC
T ss_pred EEECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCcccc--------------CCHHHHHHHhCccccccccccc
Confidence 999999999998875 65555432 358999999999999653 344455555432
Q ss_pred ------cCCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 152 ------IRAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 152 ------~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
...++++++||++|.|++++|++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 1346899999999999999999997653
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=198.54 Aligned_cols=164 Identities=29% Similarity=0.512 Sum_probs=138.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+++|.+|||||||+++|+.+.+...+.++.+... .....+++..+.+.+||+||++.+..++..+++++|+++
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 4679999999999999999999887766666666664333 455667888899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|||++++.++..+.. |+..+....+++|+++|+||+|+.... . ..+...++...+ ++++++||
T Consensus 93 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~-~~~~~~~~~~~~-~~~~~~Sa 156 (221)
T 3gj0_A 93 IMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRK-------------V-KAKSIVFHRKKN-LQYYDISA 156 (221)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSTTCCEEEEEECTTSSSCS-------------S-CGGGCCHHHHHT-CEEEECBG
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECCcccccc-------------c-cHHHHHHHHHcC-CEEEEEeC
Confidence 9999999999999874 988888877899999999999997642 1 123445666677 68999999
Q ss_pred CCcccHHHHHHHHHHHHcCCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~ 183 (195)
++|.|++++|.+|.+.+....
T Consensus 157 ~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 157 KSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp GGTBTTTHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHHHHHhCc
Confidence 999999999999999887554
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=187.04 Aligned_cols=165 Identities=18% Similarity=0.254 Sum_probs=122.7
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.+.+||+++|.+|||||||+++|+++.+. .+.+|.+.. ...+.+++ +.+.+||+||++++...+..+++++|+++
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 357899999999999999999999988775 555665432 33455555 67779999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH----cCCce
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK----IRAVK 156 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 156 (195)
+|+|+++++++..+.. |+..+... ..+.|+++|+||+|+... ...++..+.... ...++
T Consensus 89 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~ 153 (187)
T 1zj6_A 89 VVVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC--------------MTVAEISQFLKLTSIKDHQWH 153 (187)
T ss_dssp EEEETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTC--------------CCHHHHHHHHTGGGCCSSCEE
T ss_pred EEEeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCC--------------CCHHHHHHHhChhhhcCCCcE
Confidence 9999999999998875 66555543 368999999999999754 222333332221 12268
Q ss_pred eEEeccCCcccHHHHHHHHHHHHcCCCccc
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAVLRPEPVK 186 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~ 186 (195)
++++||++|.|++++|++|.+.+....+..
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 183 (187)
T 1zj6_A 154 IQACCALTGEGLCQGLEWMMSRLKIRLEHH 183 (187)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHCC-----
T ss_pred EEEccCCCCcCHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999987766544
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-33 Score=195.46 Aligned_cols=167 Identities=25% Similarity=0.383 Sum_probs=135.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccce-eEEe-CCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTV-DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
...+||+|+|.+|||||||+++|+++.+...+.++....... .... ++..+.+.+||+||++.+...+..+++++|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 567999999999999999999999888776666666444332 2222 34448899999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
|+|+|++++.++..+. .|+..+.... .+.|+++|+||+|+... +.+..++...++...+ ++++++
T Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 154 (218)
T 4djt_A 89 ILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKNR------------QKISKKLVMEVLKGKN-YEYFEI 154 (218)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHCSSSCEEEEEECTTCC----------------CCHHHHHHHTTTCC-CEEEEE
T ss_pred EEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc------------cccCHHHHHHHHHHcC-CcEEEE
Confidence 9999999999999887 4877776653 45999999999999765 3366677778887777 789999
Q ss_pred ccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
||++|.|++++|.+|.+.+.....
T Consensus 155 Sa~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 155 SAKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp BTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred ecCCCCCHHHHHHHHHHHHhcccc
Confidence 999999999999999999876554
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=185.99 Aligned_cols=156 Identities=21% Similarity=0.324 Sum_probs=121.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+++||+++|++|||||||+++|.++.+. .+.+|.... ...+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 46789999999999999999999998764 455565443 44566666 677799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH----------
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK---------- 151 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 151 (195)
|+|+++++++..... |+..+... ..+.|+++|+||+|+... +..+++.++...
T Consensus 97 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 1m2o_B 97 LVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNA--------------VSEAELRSALGLLNTTGSQRIE 161 (190)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTC--------------CCHHHHHHHTTCSSCCC---CC
T ss_pred EEECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcCC--------------CCHHHHHHHhCCcccccccccc
Confidence 999999999998875 65555432 368999999999999763 233333333221
Q ss_pred -cCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 152 -IRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 152 -~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
...++++++||++|.|++++|++|.+.
T Consensus 162 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 162 GQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp SSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 234689999999999999999998764
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=185.72 Aligned_cols=161 Identities=18% Similarity=0.267 Sum_probs=123.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC-CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS-FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+||+|+|.+|||||||+++|++.. +...+.+|.+.. ...+.+++ +.+.+||+||++.+...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS-IEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE-EEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee-EEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 467999999999999999999999887 555666666532 33445554 67779999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-C---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH--Hc--CC
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-C---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN--KI--RA 154 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~ 154 (195)
+|+|++++.++..+.. |+..+... . .+.|+++|+||+|+... ...++..++.. .+ ..
T Consensus 96 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~ 160 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDA--------------VTSVKVSQLLCLENIKDKP 160 (190)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTC--------------CCHHHHHHHHTGGGCCSSC
T ss_pred EEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccC--------------CCHHHHHHHhChhhccCCc
Confidence 9999999999998875 55554433 2 58999999999999754 23344444442 11 23
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++++++||++|.|++++|++|.+.+.+.
T Consensus 161 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 161 WHICASDAIKGEGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred eEEEEccCCCCcCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999887543
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=188.32 Aligned_cols=161 Identities=16% Similarity=0.220 Sum_probs=123.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+|+|.+|||||||+++|+++.+...+.+|.+..+. .+... .+.+.+||+||++.+...+..+++++|++++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 56799999999999999999999998887777777765543 23333 4677799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH-H---cCCcee
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN-K---IRAVKY 157 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~ 157 (195)
|+|+++++++..+.. |+..+... ..++|+++|+||+|+..... .++...... . ...+++
T Consensus 97 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 161 (188)
T 1zd9_A 97 MVDAADQEKIEASKN-ELHNLLDKPQLQGIPVLVLGNKRDLPGALD--------------EKELIEKMNLSAIQDREICC 161 (188)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCCSSCEEE
T ss_pred EEECCCHHHHHHHHH-HHHHHHhCcccCCCCEEEEEECCCCccCCC--------------HHHHHHHhChhhhccCCeeE
Confidence 999999999998875 55444332 36899999999999976421 111111110 0 123678
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+++||++|.|++++|++|.+.+.+.
T Consensus 162 ~~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 162 YSISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp EECCTTTCTTHHHHHHHHHHTCC--
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999877554
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=181.80 Aligned_cols=164 Identities=16% Similarity=0.229 Sum_probs=122.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|.+|+|||||+++|.++.+. .+.+|.+.. ...+.++ .+.+.+||+||++.+...+..+++++|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN-VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE-EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc-eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 46799999999999999999999988774 345555432 2344555 4567799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHH-hhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPEL-KHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~-~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+|+++++++..... |+..+ ... ..+.|+++|+||+|+........ +.......++...+ ++++++|
T Consensus 81 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~S 149 (171)
T 1upt_A 81 VVDSCDRDRIGISKS-ELVAMLEEEELRKAILVVFANKQDMEQAMTSSE---------MANSLGLPALKDRK-WQIFKTS 149 (171)
T ss_dssp EEETTCCTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH---------HHHHHTGGGCTTSC-EEEEECC
T ss_pred EEECCCHHHHHHHHH-HHHHHHhchhhCCCEEEEEEECCCCcCCCCHHH---------HHHHhCchhccCCc-eEEEECc
Confidence 999999999988875 44444 332 36899999999999976521111 00000011112223 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|++++|++|.+.+.+.
T Consensus 150 a~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 150 ATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp TTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHHHHhhc
Confidence 999999999999999988654
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.5e-31 Score=182.10 Aligned_cols=160 Identities=18% Similarity=0.247 Sum_probs=124.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|++|||||||+++|+++. ...+.||.+.. ...+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 578999999999999999999999887 56666776533 33444554 567799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH----HcCCcee
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN----KIRAVKY 157 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 157 (195)
|+|+++++++..+.. |+..+... .++.|+++|+||+|+..... .++..+... ....+++
T Consensus 92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 156 (186)
T 1ksh_A 92 VVDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGALS--------------CNAIQEALELDSIRSHHWRI 156 (186)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCCSSCEEE
T ss_pred EEECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCCCC--------------HHHHHHHhChhhccCCceEE
Confidence 999999999998875 55444332 36899999999999976421 122222111 0123689
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+++||++|.|++++|++|.+.+.+.
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 157 QGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-32 Score=185.35 Aligned_cols=155 Identities=16% Similarity=0.189 Sum_probs=117.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|||||||+++|+++.+.. +.||.+.. ...+.. ..+.+.+||+||++.+...+..+++++|++++|+|
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999887753 45555422 222333 34678899999999999988899999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhh--hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHH-----HHHcCCceeEE
Q psy10443 87 VVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKL-----ANKIRAVKYME 159 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~--~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 159 (195)
+++++++..... |+..+.. ..++.|+++|+||+|+..... .++.... +... .+++++
T Consensus 77 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~ 140 (164)
T 1r8s_A 77 SNDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNAMN--------------AAEITDKLGLHSLRHR-NWYIQA 140 (164)
T ss_dssp TTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCSSC-CEEEEE
T ss_pred CCCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCCCC--------------HHHHHHHhCcccccCc-cEEEEE
Confidence 999999998875 5555443 246899999999999966421 1111111 1112 267999
Q ss_pred eccCCcccHHHHHHHHHHHHcC
Q psy10443 160 CSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
+||++|.|++++|++|.+.+.+
T Consensus 141 ~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 141 TCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp CBTTTTBTHHHHHHHHHHHC--
T ss_pred cccCCCcCHHHHHHHHHHHHhh
Confidence 9999999999999999988754
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-31 Score=183.22 Aligned_cols=156 Identities=19% Similarity=0.278 Sum_probs=119.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|.+|||||||+++|+++.+ ..+.+|.+.. ...+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4679999999999999999999999877 4455555433 23455555 667799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH----cCCcee
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK----IRAVKY 157 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 157 (195)
|+|+++++++..+.. |+..+... ..+.|+++|+||+|+.... ..++....... ...+++
T Consensus 95 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~ 159 (181)
T 2h17_A 95 VVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECM--------------TVAEISQFLKLTSIKDHQWHI 159 (181)
T ss_dssp EEETTCTTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC--------------CHHHHHHHTTGGGCCSSCEEE
T ss_pred EEECCCHHHHHHHHH-HHHHHHhChhhCCCeEEEEEECCCcccCC--------------CHHHHHHHhCcccccCCceEE
Confidence 999999999998875 55444433 4689999999999996641 12222222110 122589
Q ss_pred EEeccCCcccHHHHHHHHHHH
Q psy10443 158 MECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
+++||++|.|++++|++|.+.
T Consensus 160 ~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 160 QACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp EECBTTTTBTHHHHHHHHHTC
T ss_pred EEccCCCCcCHHHHHHHHHhh
Confidence 999999999999999998764
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=185.48 Aligned_cols=165 Identities=15% Similarity=0.216 Sum_probs=121.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc---ceeEEe-CCEEEEEEEEeCCCCccccccC---CCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY---SAPFTV-DGIPVSLGLWDTAGQEDYDRLR---PLSYP 76 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~l~~~D~~G~~~~~~~~---~~~~~ 76 (195)
.+.+||+++|.+|||||||++++.+... .. ++....+ .....+ ++..+.+.+||+||++.|.... ..+++
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 5689999999999999999998887432 22 2322222 122223 3566888999999999987776 78999
Q ss_pred CccEEEEEEeCCCh--hcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH----
Q psy10443 77 QTDVFLICYSVVSP--SSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN---- 150 (195)
Q Consensus 77 ~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 150 (195)
++|++|+|||++++ +++..+. .|+..+....+++|+++|+||+|+......... .+.+..++...+++
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~-~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-----~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLH-ITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIET-----QRDIHQRANDDLADAGLE 168 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHH-HHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHH-----HHHHHHHHHHHHHHTTCT
T ss_pred cCCEEEEEEECCCchHHHHHHHH-HHHHHHHhcCCCCcEEEEEeccccCchhhhhHH-----HhHHHHHHHHHHHHhhhh
Confidence 99999999999997 5555555 366666556779999999999998764321110 02244556677777
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
.++ ++++++||++ .|++++|..+++.+
T Consensus 169 ~~~-~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLH-LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSC-EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCC-cceEEEEech-hhHHHHHHHHHHHh
Confidence 555 7899999999 99999999999875
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=183.94 Aligned_cols=164 Identities=18% Similarity=0.229 Sum_probs=121.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++++||+++|++|||||||+++|..+.+.. +.||.+.. ...+..++ +.+.+||+||++.+...+..+++++|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 578999999999999999999999877643 44554422 23344454 567799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+|+++++++..... |+..+... .++.|+++|+||+|+......... ........+...+ ++++++|
T Consensus 96 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~S 164 (189)
T 2x77_A 96 VVDSTDRDRMGVAKH-ELYALLDEDELRKSLLLIFANKQDLPDAASEAEI---------AEQLGVSSIMNRT-WTIVKSS 164 (189)
T ss_dssp EEETTCCTTHHHHHH-HHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHH---------HHHTTGGGCCSSC-EEEEECC
T ss_pred EEeCCCHHHHHHHHH-HHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHH---------HHHhChhhccCCc-eEEEEcc
Confidence 999999999998875 54444332 358999999999999765211110 0000000111222 5799999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|+++++++|.+.+.+.
T Consensus 165 a~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 165 SKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp TTTCTTHHHHHHHHHHHHHHT
T ss_pred CCCccCHHHHHHHHHHHHHhc
Confidence 999999999999999988654
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-32 Score=186.97 Aligned_cols=159 Identities=15% Similarity=0.209 Sum_probs=116.0
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.++.+||+++|++|||||||+++|+++.+. .+.||.+.. ...+..++ +.+.+||+||++.+...+..+++++|+++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN-VETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEE-EEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCcee-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 467899999999999999999999988764 344544422 22334444 67779999999999999989999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHH-H----HHHcCCc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQK-L----ANKIRAV 155 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~ 155 (195)
+|+|+++++++..+.. |+..+... .++.|+++|+||+|+..... .++... + +... .+
T Consensus 102 lv~D~~~~~s~~~~~~-~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--------------~~~i~~~~~~~~~~~~-~~ 165 (192)
T 2b6h_A 102 FVVDSNDRERVQESAD-ELQKMLQEDELRDAVLLVFANKQDMPNAMP--------------VSELTDKLGLQHLRSR-TW 165 (192)
T ss_dssp EEEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCSSC-CE
T ss_pred EEEECCCHHHHHHHHH-HHHHHhcccccCCCeEEEEEECCCCCCCCC--------------HHHHHHHhCcccccCC-ce
Confidence 9999999999998875 55554432 35899999999999965421 111111 1 1112 25
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
+++++||++|.|++++|++|.+.+.+
T Consensus 166 ~~~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 166 YVQATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred EEEECcCCCcCCHHHHHHHHHHHHhc
Confidence 79999999999999999999988753
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=182.68 Aligned_cols=159 Identities=20% Similarity=0.316 Sum_probs=119.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.++|+++|++|||||||+++|.+..+ ..+.+|.+.. ...+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN-IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE-EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE-EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 5789999999999999999999998754 3344554422 23344554 677799999999999888999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH----HcCCcee
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN----KIRAVKY 157 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 157 (195)
|+|+++++++..... |+..+... ..+.|+++|+||+|+..... .++..+... ....+++
T Consensus 90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 154 (181)
T 1fzq_A 90 VIDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTAAP--------------ASEIAEGLNLHTIRDRVWQI 154 (181)
T ss_dssp EEETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCCSSCEEE
T ss_pred EEECcCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcCcccCCC--------------HHHHHHHhCchhccCCceEE
Confidence 999999999998875 55544332 36799999999999976421 112211110 0122679
Q ss_pred EEeccCCcccHHHHHHHHHHHHcC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
+++||++|.|++++|++|.+.+.+
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 155 QSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp EECCTTTCTTHHHHHHHHHHTC--
T ss_pred EEccCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999987754
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-31 Score=181.00 Aligned_cols=159 Identities=16% Similarity=0.232 Sum_probs=119.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++++||+++|++|||||||+++|+++.+ ..+.+|.+.. ...+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 6789999999999999999999998766 4444554422 23444554 667799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH----cCCcee
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK----IRAVKY 157 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 157 (195)
|+|+++++++..+.. |+..+... ..+.|+++|+||+|+.... ..++....... ...+++
T Consensus 92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 92 VVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGAL--------------SASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp EEETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTCC--------------CHHHHHHHTTTTTCCSSCEEE
T ss_pred EEECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCCC--------------CHHHHHHHhCcccccCCceEE
Confidence 999999999998875 65555543 4689999999999996642 12222222111 122579
Q ss_pred EEeccCCcccHHHHHHHHHHHHcC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
+++||++|.|+++++++|.+.+.+
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999999998754
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-31 Score=185.78 Aligned_cols=174 Identities=14% Similarity=0.165 Sum_probs=117.8
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCE-EEEEEEEeCCCCccccc-cCCCCCCCccE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGI-PVSLGLWDTAGQEDYDR-LRPLSYPQTDV 80 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~~~D~~G~~~~~~-~~~~~~~~~d~ 80 (195)
..+.+||+++|++|||||||+++|+++.+...+.++...... +.+++. .+.+.+||+||++.+.. ++..+++.+|+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 457899999999999999999999998887777655433322 455543 57888999999999987 78888999999
Q ss_pred EEEEEeCCChh-cHHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcccchHhhhhhhhc----------CC---------
Q psy10443 81 FLICYSVVSPS-SFDNVTSKWYPELKHH---CPDAPIILVGTKIDLREDRETLNLLSEQ----------NL--------- 137 (195)
Q Consensus 81 ~i~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~----------~~--------- 137 (195)
+++|||+++.. ++......|...+... .+++|+++|+||+|+............. ..
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 4555555566555442 3579999999999997653221110000 00
Q ss_pred ---CCccHHHHHHHHHHcC--CceeEEeccCCc------ccHHHHHHHHHHH
Q psy10443 138 ---SPVKREQGQKLANKIR--AVKYMECSALTQ------RGLRQVFDEAVRA 178 (195)
Q Consensus 138 ---~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~------~~v~~~~~~l~~~ 178 (195)
+....++.+.|+.... .++++++||++| .|++++|++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0011111111222121 478999999999 9999999999875
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=183.89 Aligned_cols=168 Identities=23% Similarity=0.374 Sum_probs=118.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC--CCCCCcccceeeccc-eeEEe---CCEEEEEEEEeCCCCccccccCCCCCCCcc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD--SFPGEYVPTVFDNYS-APFTV---DGIPVSLGLWDTAGQEDYDRLRPLSYPQTD 79 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~--~~~~~~~~t~~~~~~-~~~~~---~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d 79 (195)
++||+++|++|||||||+++|.+. .+...+.+|.+..+. ....+ ++..+.+.+||++|+++|..++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999984 455556666644432 22222 345678899999999999999889999999
Q ss_pred EEEEEEeCCCh-hcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc---
Q psy10443 80 VFLICYSVVSP-SSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV--- 155 (195)
Q Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 155 (195)
++++|||++++ .++..+. .|+..+....++.|+++|+||+|+........ ...+....++..++..
T Consensus 82 ~~i~v~d~~~~~~s~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 151 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMK-PWLFNIKARASSSPVILVGTHLDVSDEKQRKA---------CMSKITKELLNKRGFPAIR 151 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHH-HHHHHHHHHCTTCEEEEEEECGGGCCHHHHHH---------HHHHHHHHTTTCTTSCEEE
T ss_pred EEEEEEeCCcchhHHHHHH-HHHHHHHhhCCCCcEEEEEECCCcccchhhHH---------HHHHHHHHHHHhcCCcchh
Confidence 99999999997 4777776 48888877667899999999999976432110 1123344555555532
Q ss_pred eeEEeccCCcc-cHHHHHHHHHHHHcCCC
Q psy10443 156 KYMECSALTQR-GLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 156 ~~~~~Sa~~~~-~v~~~~~~l~~~~~~~~ 183 (195)
+++++||+++. |++++++.|.+.+...+
T Consensus 152 ~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 152 DYHFVNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp EEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred heEEEecccCchhHHHHHHHHHHHHhccc
Confidence 38999999996 99999999998886644
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-29 Score=170.89 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=118.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.++|+++|.+|||||||+++|++..+...+.++..... ...+.+++..+ .+||+||++.+...+..++..+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKI--TFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEE--EESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceE--EEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 5789999999999999999999999887665555543332 34566677654 59999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH-------cC-C
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK-------IR-A 154 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~ 154 (195)
+|+|++++....... ++..+.. .++|+++|+||+|+..... ++....... ++ .
T Consensus 84 ~v~d~~~~~~~~~~~--~l~~~~~--~~~p~ilv~nK~Dl~~~~~---------------~~~~~~~~~~~~~~~~~~~~ 144 (178)
T 2lkc_A 84 LVVAADDGVMPQTVE--AINHAKA--ANVPIIVAINKMDKPEANP---------------DRVMQELMEYNLVPEEWGGD 144 (178)
T ss_dssp EEEETTCCCCHHHHH--HHHHHGG--GSCCEEEEEETTTSSCSCH---------------HHHHHHHTTTTCCBTTTTSS
T ss_pred EEEECCCCCcHHHHH--HHHHHHh--CCCCEEEEEECccCCcCCH---------------HHHHHHHHhcCcChhHcCCc
Confidence 999999854333222 2222322 3789999999999976421 111111111 11 2
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++++++||++|.|++++|++|.+.+...+.
T Consensus 145 ~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 145 TIFCKLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred ccEEEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 589999999999999999999998765544
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=174.90 Aligned_cols=164 Identities=30% Similarity=0.540 Sum_probs=136.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
...++|+++|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 4579999999999999999999999888777777764333 456778999999999999999999988888899999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|+++..++..+.. |+..+... ..+.|+++++||+|+.+. +....++++.++...+ +.++++|
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~i~~v~nK~Dl~~~------------~~~~~~~a~~l~~~~~-~~~~d~S 148 (199)
T 2f9l_A 83 LVYDIAKHLTYENVER-WLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTDEARAFAEKNN-LSFIETS 148 (199)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECcccccc------------cCcCHHHHHHHHHHcC-CeEEEEe
Confidence 9999999999887764 77666554 357899999999999764 3355667888888887 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|+++.|++++|+.|.+.+.+
T Consensus 149 al~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=185.53 Aligned_cols=162 Identities=20% Similarity=0.291 Sum_probs=123.1
Q ss_pred CcceEEEEEcCC---------CCchHHHHHHhhc---CCCCCCcccce-eecc-ceeE--------------EeCCEEEE
Q psy10443 4 GRPIKCVVVGDG---------TVGKTCMLISYTT---DSFPGEYVPTV-FDNY-SAPF--------------TVDGIPVS 55 (195)
Q Consensus 4 ~~~~~i~v~G~~---------~~GKtsli~~l~~---~~~~~~~~~t~-~~~~-~~~~--------------~~~~~~~~ 55 (195)
++.+||+|+|.+ |||||||+++|++ ..+...+.+|+ ...+ ...+ .+++..+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 567999999999 9999999999999 55666677765 2222 1221 14677889
Q ss_pred EEEEe-----------------------CCCCccccccCCCCCC---------------------CccEEEEEEeCCCh-
Q psy10443 56 LGLWD-----------------------TAGQEDYDRLRPLSYP---------------------QTDVFLICYSVVSP- 90 (195)
Q Consensus 56 l~~~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~- 90 (195)
+.+|| ++|+++|..++..+++ ++|++|+|||++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 7788888888888888 79999999999998
Q ss_pred -hcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCccc
Q psy10443 91 -SSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRG 167 (195)
Q Consensus 91 -~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (195)
.+++.+.. |+..+... .+++|+++|+||+|+..... + ++...++.....++++++||++|.|
T Consensus 177 ~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~------------v--~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 177 NRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVERY------------I--RDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp --CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCHHH------------H--HHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred hhhHHHHHH-HHHHHHHHhccCCCCEEEEEEcccccccHH------------H--HHHHHHHHhcCCCeEEEEECCCCCC
Confidence 99998874 77776653 36899999999999965421 2 4566777765347899999999999
Q ss_pred HHHHHHHHHHHHc
Q psy10443 168 LRQVFDEAVRAVL 180 (195)
Q Consensus 168 v~~~~~~l~~~~~ 180 (195)
++++|++|.+.+.
T Consensus 242 v~elf~~l~~~l~ 254 (255)
T 3c5h_A 242 VDLAFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-31 Score=196.17 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=116.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+|+|.+|||||||+++|.++.+...+ ||....+ ..+... .+.+.+||+||++.+..++..+++.+|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~-~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE-EEEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE-EEEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 46789999999999999999999988764332 3433222 223333 4677799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH-HH---cCCceeE
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA-NK---IRAVKYM 158 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~ 158 (195)
|||++++.++..+...|...+... .+++|+++|+||+|+..... .++..... .. ...++++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--------------~~~i~~~~~~~~~~~~~~~~~ 304 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--------------AAEITDKLGLHSLRHRNWYIQ 304 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHHTCTTCCSSCEEEE
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--------------HHHHHHHhchhhhhcCCCEEE
Confidence 999999999998876555555443 36899999999999976532 11111111 10 1226799
Q ss_pred EeccCCcccHHHHHHHHHHHHcCC
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++||++|.|++++|++|.+.+.+.
T Consensus 305 ~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 305 ATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred EEECCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999999988653
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-30 Score=188.98 Aligned_cols=168 Identities=17% Similarity=0.252 Sum_probs=128.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CC-CcccceeeccceeEEeCCEEEEEEEEeCCCCccc-----cccCCCCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PG-EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY-----DRLRPLSYP 76 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~-~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-----~~~~~~~~~ 76 (195)
..+||+++|++|||||||+++|+++.. .. .+.+|....+. ...+++ .+.+.+||+||++.+ ...+..+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 468999999999999999999998732 22 23344433332 344444 578889999999988 778888899
Q ss_pred CccEEEEEEeCCChhcHHHHHHhh---HHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 77 QTDVFLICYSVVSPSSFDNVTSKW---YPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
++|++|+|||+++++++..+.. | +..+....+++|+++|+||+|+......... ..+..+++.+++..++
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~-~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~------~~v~~~~~~~~~~~~g 152 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEI-FAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREEL------FQIMMKNLSETSSEFG 152 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHH-HHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHH------HHHHHHHHHHHHHTTT
T ss_pred cCCEEEEEEECCChhhHHHHHH-HHHHHHHHHHhCCCCeEEEEEecccccchhhhhHH------HHHHHHHHHHHHHHcC
Confidence 9999999999999999988863 5 4444455778999999999999874332110 0134567888999887
Q ss_pred C--ceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 154 A--VKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 154 ~--~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
. ++++++||++ .|+.++|..+++.+.+.
T Consensus 153 ~~~~~~~~tSa~~-~~i~e~~~~iv~~li~~ 182 (307)
T 3r7w_A 153 FPNLIGFPTSIWD-ESLYKAWSQIVCSLIPN 182 (307)
T ss_dssp CCSCEEEECCTTS-SHHHHHHHHHHHTTCSC
T ss_pred CCCeEEEEeeecC-ChHHHHHHHHHHHHcCC
Confidence 3 7999999999 89999999998876543
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=169.48 Aligned_cols=161 Identities=29% Similarity=0.513 Sum_probs=136.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
..++|+++|++|||||||++++.+..+...+.+|.+..+ ...+.+++..+.+.+||++|++++...+..+++.++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 458999999999999999999999888777777775544 5677889999999999999999999999899999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+|+++..+++.+.. |+..+... ..+.|+++++||+|+... +....++++.++...+ +.++++|+
T Consensus 108 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~i~~v~nK~Dl~~~------------~~~~~~~a~~l~~~~~-~~~ld~Sa 173 (191)
T 1oix_A 108 VYDIAKHLTYENVER-WLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTDEARAFAEKNG-LSFIETSA 173 (191)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECCT
T ss_pred EEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEeC
Confidence 999999988887763 77666543 357899999999999754 3355667888888887 68999999
Q ss_pred CCcccHHHHHHHHHHHH
Q psy10443 163 LTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~ 179 (195)
+++.|++++|+.|.+.+
T Consensus 174 ld~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 174 LDSTNVEAAFQTILTEI 190 (191)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998875
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-30 Score=190.34 Aligned_cols=164 Identities=12% Similarity=0.151 Sum_probs=119.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCC---CcccceeeccceeEEeCCEEEEEEEEeCCCCccccc---cCCCCCCCccEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPG---EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR---LRPLSYPQTDVF 81 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~---~~~~~~~~~d~~ 81 (195)
||+++|++|||||||++++.+..++. .+.+|.+..+.. ++ ..+++++||||||++|.. .+..|+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 68999999999999999988764432 244555544432 32 358899999999999964 357889999999
Q ss_pred EEEEeCCCh--hcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH----cCCc
Q psy10443 82 LICYSVVSP--SSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK----IRAV 155 (195)
Q Consensus 82 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 155 (195)
|+|||++++ ++..... .|+..+....+++|+++++||+|+.......... |.+..++++++++. ++ +
T Consensus 77 IlV~Ditd~~~~~~~~l~-~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~-----R~V~~~~~~~la~~~~~~~~-i 149 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNLA-MIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQ-----RDIMQRTGEELLELGLDGVQ-V 149 (331)
T ss_dssp EEECCCSSCTTHHHHHHH-HHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHH-----HHHHHHHHHTTSSSSCSCCC-E
T ss_pred EEEEECCchHHHHHHHHH-HHHHHHhhcCCCCcEEEEEECcccCchhhhhhHH-----HHhhHHHHHHHHhhcccccC-c
Confidence 999999987 2222222 2445455557899999999999998654311100 22445566666664 44 7
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+|++|||++ .++.++|..+++.+.+..
T Consensus 150 ~f~eTSAkd-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 150 SFYLTSIFD-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp EEECCCSSS-SHHHHHHHHHHTTSSTTH
T ss_pred eEEEeccCC-CcHHHHHHHHHHHHHhhH
Confidence 899999998 589999999999887554
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-29 Score=168.10 Aligned_cols=154 Identities=17% Similarity=0.179 Sum_probs=111.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccc-eeeccceeEEeCCEEEEEEEEeCCCCccccc------cCCCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPT-VFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR------LRPLSYP 76 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~------~~~~~~~ 76 (195)
|++++|+++|++|||||||+++|.+..+...+.++ +.......+.+++ ..+.+||+||++.+.. +...+++
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 78 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 78 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence 45789999999999999999999987654333333 2333344455565 4677999999988753 2244554
Q ss_pred --CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 77 --QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 77 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
++|++++|+|+++.+... .|+..+... +.|+++|+||+|+.... .+.. +...++..++
T Consensus 79 ~~~~~~~i~v~D~~~~~~~~----~~~~~~~~~--~~p~ilv~nK~Dl~~~~------------~~~~-~~~~~~~~~~- 138 (165)
T 2wji_A 79 NEKPDLVVNIVDATALERNL----YLTLQLMEM--GANLLLALNKMDLAKSL------------GIEI-DVDKLEKILG- 138 (165)
T ss_dssp HHCCSEEEEEEETTCHHHHH----HHHHHHHHT--TCCEEEEEECHHHHHHT------------TCCC-CHHHHHHHHT-
T ss_pred cCCCCEEEEEecCCchhHhH----HHHHHHHhc--CCCEEEEEEchHhcccc------------Chhh-HHHHHHHHhC-
Confidence 799999999999865432 255555543 79999999999986532 1221 3566777777
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
++++++||++|.|++++|+++.+.+
T Consensus 139 ~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 139 VKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp SCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999998865
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=173.62 Aligned_cols=166 Identities=16% Similarity=0.147 Sum_probs=113.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCC-CcccceeeccceeEEeCCEEEEEEEEeCCCCcccc---------ccCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPG-EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD---------RLRPL 73 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~---------~~~~~ 73 (195)
.+.++|+|+|.+|||||||+++|++..+.. .+..++..........++ +.+.+||+||+.... ..+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 457999999999999999999999876531 222222222222233344 567799999983211 11123
Q ss_pred CCCCccEEEEEEeCCChhcHHHH-HHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccH---HHHHHHH
Q psy10443 74 SYPQTDVFLICYSVVSPSSFDNV-TSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR---EQGQKLA 149 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 149 (195)
++..+|++|+|+|++++.++... ...|+..+....++.|+++|+||+|+.... .+.. +....++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~ 172 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD------------SLSIDNKLLIKQIL 172 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--------------CCCHHHHHHHHHHH
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch------------hhHHHHHHHHHHHH
Confidence 46788999999999998776422 123666666655689999999999997652 2332 2455566
Q ss_pred HHcC-CceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 150 NKIR-AVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 150 ~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
...+ .++++++||++|.|++++|++|.+.+.+.+
T Consensus 173 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 173 DNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp HHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 6553 268999999999999999999999886554
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-29 Score=197.06 Aligned_cols=166 Identities=20% Similarity=0.287 Sum_probs=122.1
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecccee-------EE--eCCEEEEEEEEeCCCCccccccCC
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP-------FT--VDGIPVSLGLWDTAGQEDYDRLRP 72 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~-------~~--~~~~~~~l~~~D~~G~~~~~~~~~ 72 (195)
...+.+||+++|.+|||||||+++|++..+...+.+|.+..+... .. .++..+.+.+||+||++.+...+.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 346789999999999999999999999888777777775554321 11 233457888999999999999999
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI 152 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
.+++.+|++|+|+|+++.+.. . +|+..+....++.|+++|+||+|+... +.+..++.+.++...
T Consensus 117 ~~l~~~d~ii~V~D~s~~~~~---~-~~~~~l~~~~~~~pvilV~NK~Dl~~~------------~~v~~~~~~~~~~~~ 180 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDSNK---H-YWLRHIEKYGGKSPVIVVMNKIDENPS------------YNIEQKKINERFPAI 180 (535)
T ss_dssp HHHHSSEEEEEEECGGGGGGH---H-HHHHHHHHHSSSCCEEEEECCTTTCTT------------CCCCHHHHHHHCGGG
T ss_pred HHccCCcEEEEEEeCCCchhH---H-HHHHHHHHhCCCCCEEEEEECCCcccc------------cccCHHHHHHHHHhc
Confidence 999999999999999876433 3 588888888778999999999999765 335667777777777
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
+ .+++++||++|.|+++++..+.+.+.+...
T Consensus 181 ~-~~~~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 181 E-NRFHRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp T-TCEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred C-CceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence 7 689999999999999999999998876543
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-28 Score=162.82 Aligned_cols=150 Identities=19% Similarity=0.151 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCccc-------cccCCCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY-------DRLRPLSYPQ 77 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-------~~~~~~~~~~ 77 (195)
.||+++|.+|+|||||+++|.+..+. ..+.+++..........++. .+.+||+||+..+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999987642 33334444444455566665 5569999998873 3334557889
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
+|++++|+|++++.+.... .+...+.. .+.|+++|+||+|+.... ++..+++ .++..++
T Consensus 80 ~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~ilv~nK~Dl~~~~----------------~~~~~~~-~~~~~~~ 138 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADY--EVAEYLRR--KGKPVILVATKVDDPKHE----------------LYLGPLY-GLGFGDP 138 (161)
T ss_dssp CSEEEEEEESSSCCCHHHH--HHHHHHHH--HTCCEEEEEECCCSGGGG----------------GGCGGGG-GGSSCSC
T ss_pred CCEEEEEEECCCcccHhHH--HHHHHHHh--cCCCEEEEEECcccccch----------------HhHHHHH-hCCCCCe
Confidence 9999999999986554332 23344443 378999999999997652 1122233 4553479
Q ss_pred EEeccCCcccHHHHHHHHHHHH
Q psy10443 158 MECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
+++||++|.|++++|++|.+.+
T Consensus 139 ~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 139 IPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp EECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEecccCCChHHHHHHHHHhC
Confidence 9999999999999999998865
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-28 Score=168.19 Aligned_cols=161 Identities=18% Similarity=0.166 Sum_probs=112.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCC----------CccccccCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG----------QEDYDRLRPL 73 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G----------~~~~~~~~~~ 73 (195)
...++|+++|.+|+|||||+++|++..+ ..+.++.+..........+ ..+.+||+|| ++.+..++..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEEC--CcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 4568999999999999999999998763 2333333332222222112 2456999999 5556655555
Q ss_pred CCCC---ccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 74 SYPQ---TDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 74 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
+++. +|++++|+|+++..+..... +...+... +.|+++|+||+|+...... ....++...++.
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~~--~~p~i~v~nK~Dl~~~~~~----------~~~~~~~~~~~~ 163 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKSL--NIPFTIVLTKMDKVKMSER----------AKKLEEHRKVFS 163 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCGGGH----------HHHHHHHHHHHH
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHHc--CCCEEEEEEChhcCChHHH----------HHHHHHHHHHHh
Confidence 5554 49999999998765544332 33333333 7899999999999754321 123355666777
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
..+.++++++||++|.|++++|++|.+.+.+
T Consensus 164 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 164 KYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred hcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 6666789999999999999999999998754
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-28 Score=169.49 Aligned_cols=160 Identities=16% Similarity=0.173 Sum_probs=105.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccce-eEEeCCEEEEEEEEeCCC----------CccccccCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAG----------QEDYDRLRP 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~~~D~~G----------~~~~~~~~~ 72 (195)
.+.++|+|+|.+|||||||+++|++..+...+.++.+..... ....++ .+.+||+|| ++.+..++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 457999999999999999999999887554444444333221 222333 467999999 666666666
Q ss_pred CCCCCc---cEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH
Q psy10443 73 LSYPQT---DVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA 149 (195)
Q Consensus 73 ~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (195)
.+++.+ |++++|+|++++.+..+.. +...+.. .+.|+++|+||+|+........ ..++..+..
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~----------~~~~~~~~~ 163 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY--YGIPVIVIATKADKIPKGKWDK----------HAKVVRQTL 163 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH--TTCCEEEEEECGGGSCGGGHHH----------HHHHHHHHH
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH--cCCCEEEEEECcccCChHHHHH----------HHHHHHHHH
Confidence 666655 9999999999987776543 3334433 4789999999999976532111 012222211
Q ss_pred HHcCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 150 NKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 150 ~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
......+++++||++|.|++++|++|.+.+.
T Consensus 164 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 164 NIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred cccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 1123378999999999999999999998764
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-28 Score=168.79 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=114.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCC-----------CccccccCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG-----------QEDYDRLRPLSY 75 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G-----------~~~~~~~~~~~~ 75 (195)
+||+++|.+|||||||+++|++..+...+.++.... ......+ .+.+||+|| ++.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 689999999999999999999988766555544222 1222333 466999999 566666666677
Q ss_pred CC-ccEEEEEEeCCChhcHHHHHHhhHHH---------Hhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 76 PQ-TDVFLICYSVVSPSSFDNVTSKWYPE---------LKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 76 ~~-~d~~i~v~d~~~~~s~~~~~~~~~~~---------~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
+. ++++++|+++.|..++..+...|... ... ...++|+++|+||+|+.... .++
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---------------~~~ 141 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---------------QEV 141 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---------------HHH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---------------HHH
Confidence 76 77777777777777777664445432 111 12479999999999997652 345
Q ss_pred HHHHHHHcCC------ceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 145 GQKLANKIRA------VKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 145 ~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
...++..++. .+++++||++|.|++++|++|.+.+.+.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 142 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 6677777763 247999999999999999999998876544
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-27 Score=169.01 Aligned_cols=156 Identities=19% Similarity=0.220 Sum_probs=116.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccC------CCCC-
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLR------PLSY- 75 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~------~~~~- 75 (195)
++.++|+++|++|||||||+++|++..+. .++++++.......+..++ +.+.+||+||+..+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 56799999999999999999999986542 2333344333344444445 566799999998876533 4444
Q ss_pred -CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 76 -PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 76 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
..+|++++|+|+++.++... |...+... ++|+++++||+|+.... .+. .+...+++.++
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~~----~~~~l~~~--~~pvilv~NK~Dl~~~~------------~i~-~~~~~l~~~lg- 140 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSLY----LLLEILEM--EKKVILAMTAIDEAKKT------------GMK-IDRYELQKHLG- 140 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHHH----HHHHHHTT--TCCEEEEEECHHHHHHT------------TCC-BCHHHHHHHHC-
T ss_pred hcCCCEEEEEeCCCchhhHHH----HHHHHHhc--CCCEEEEEECcCCCCcc------------chH-HHHHHHHHHcC-
Confidence 58999999999998765432 44444443 79999999999986542 122 23667788888
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
++++++||++|.|++++|+++.+.+..
T Consensus 141 ~~vi~~SA~~g~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 141 IPVVFTSSVTGEGLEELKEKIVEYAQK 167 (258)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred CCEEEEEeeCCcCHHHHHHHHHHHhhc
Confidence 799999999999999999999997753
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-28 Score=165.25 Aligned_cols=153 Identities=20% Similarity=0.264 Sum_probs=110.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccC--------CC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLR--------PL 73 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~--------~~ 73 (195)
.+.++|+++|.+|||||||+++|.+..+ ...+.+++.+.....+.+++.. +.+||+||++.+.... ..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHH
Confidence 3568999999999999999999998753 2344555555555667777765 5699999987643211 13
Q ss_pred CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc
Q psy10443 74 SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI 152 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
+++.+|++++|+|++++.++... .|+..+.... .++|+++|+||+|+..... .. +..
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----------~~--------~~~- 137 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVDPA--EIWPEFIARLPAKLPITVVRNKADITGETL-----------GM--------SEV- 137 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCSHH--HHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----------EE--------EEE-
T ss_pred HHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHhcccCCCEEEEEECccCCcchh-----------hh--------hhc-
Confidence 57899999999999998886533 3555555443 4799999999999854210 00 011
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
...+++++||++|.|++++|++|.+.+.
T Consensus 138 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 138 NGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp TTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred cCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 2368999999999999999999988764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=163.64 Aligned_cols=160 Identities=17% Similarity=0.179 Sum_probs=116.2
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccc-eeeccceeEEeCCEEEEEEEEeCCCCccccc------cCCCC
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPT-VFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR------LRPLS 74 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~------~~~~~ 74 (195)
+.+++++|+++|++|||||||+++|++..+...+.++ +.......+..++ +.+.+||+||++.+.. ++..+
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHH
Confidence 4578899999999999999999999986543222222 2333344455555 5667999999988752 34444
Q ss_pred CC--CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc
Q psy10443 75 YP--QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI 152 (195)
Q Consensus 75 ~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
++ .++++++|+|+++.+ ... .|...+.. .+.|+++++||+|+.... .+. .+...++..+
T Consensus 81 ~~~~~~~~~i~v~d~~~~~---~~~-~~~~~~~~--~~~piilv~nK~Dl~~~~------------~~~-~~~~~~~~~~ 141 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATALE---RNL-YLTLQLME--MGANLLLALNKMDLAKSL------------GIE-IDVDKLEKIL 141 (188)
T ss_dssp HHHHCCSEEEEEEEGGGHH---HHH-HHHHHHHT--TTCCEEEEEECHHHHHHT------------TCC-CCHHHHHHHH
T ss_pred HhccCCCEEEEEecchhHH---HHH-HHHHHHHh--cCCCEEEEEEhhhccccc------------cch-HHHHHHHHHh
Confidence 43 589999999987643 333 36555554 378999999999986542 122 3466777777
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+ ++++++||+++.|++++|+++.+.+....
T Consensus 142 ~-~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 142 G-VKVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp T-SCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred C-CCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 7 68999999999999999999999887654
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=169.72 Aligned_cols=164 Identities=16% Similarity=0.112 Sum_probs=123.9
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc----------cc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD----------RL 70 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~----------~~ 70 (195)
+.+.-.|+++|.+|||||||+++|++..+. .....++..........+ ..+.+.||||||+..+. ..
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 356678999999999999999999998764 333344444444444444 13456699999986654 44
Q ss_pred CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
...+++.+|++++|+|++++.+..+.. .|+..+... +.|+++|+||+|+..... ...+....+..
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~-~~~~~l~~~--~~pvilV~NK~Dl~~~~~------------~~~~~~~~l~~ 150 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEE-IYQNFIKPL--NKPVIVVINKIDKIGPAK------------NVLPLIDEIHK 150 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHTGGG--CCCEEEEEECGGGSSSGG------------GGHHHHHHHHH
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHH-HHHHHHHhc--CCCEEEEEECccCCCCHH------------HHHHHHHHHHH
Confidence 456778899999999999988887765 367777764 799999999999973221 33455666777
Q ss_pred Hc-CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 151 KI-RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 151 ~~-~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.+ ...+++++||++|.|++++++.|.+.+.+.
T Consensus 151 ~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 151 KHPELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp HCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred hccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 76 456899999999999999999999988654
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-27 Score=171.75 Aligned_cols=153 Identities=19% Similarity=0.188 Sum_probs=112.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC-CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc------cCCCCCC-
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS-FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR------LRPLSYP- 76 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~------~~~~~~~- 76 (195)
..++|+++|++|||||||+++|++.. +..++++++...... .++. .+.+.+||+||+..+.. +...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~--~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSG--LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEE--ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEE--EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 36899999999999999999999865 344454444332222 3343 56677999999988752 3344554
Q ss_pred -CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 77 -QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 77 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
.+|++++|+|+++.++.. +|...+.. .++|+++++||+|+.... .+. .+...++..++ +
T Consensus 79 ~~~d~vi~V~D~t~~e~~~----~~~~~l~~--~~~p~ilv~NK~Dl~~~~------------~~~-~~~~~l~~~lg-~ 138 (272)
T 3b1v_A 79 QRADSILNVVDATNLERNL----YLTTQLIE--TGIPVTIALNMIDVLDGQ------------GKK-INVDKLSYHLG-V 138 (272)
T ss_dssp TCCSEEEEEEEGGGHHHHH----HHHHHHHH--TCSCEEEEEECHHHHHHT------------TCC-CCHHHHHHHHT-S
T ss_pred CCCCEEEEEecCCchHhHH----HHHHHHHh--cCCCEEEEEEChhhCCcC------------CcH-HHHHHHHHHcC-C
Confidence 699999999999865543 24444444 379999999999986542 122 34567777887 6
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
+++++||++|.|++++|+++.+.+.
T Consensus 139 ~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 139 PVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred CEEEEEccCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999988754
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-27 Score=173.00 Aligned_cols=157 Identities=13% Similarity=0.164 Sum_probs=113.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCC----------
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRP---------- 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~---------- 72 (195)
|+.++|+++|.+|+|||||+++|++..+. .++.+++.+.....+..++. .+.+||+||+..+.....
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHH
Confidence 46899999999999999999999987542 22333344444445555554 455999999988763221
Q ss_pred CC--CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 73 LS--YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 73 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
.+ .+.+|++++|+|+++.++... |...+... ++|+++|+||+|+..... . ......+..
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~~~~~----~~~~l~~~--~~p~ivv~NK~Dl~~~~~------------~-~~~~~~l~~ 139 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLERNLY----LTLQLLEL--GIPCIVALNMLDIAEKQN------------I-RIEIDALSA 139 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHHHHHH----HHHHHHHH--TCCEEEEEECHHHHHHTT------------E-EECHHHHHH
T ss_pred HHHhhcCCCEEEEEecCCChHHHHH----HHHHHHhc--CCCEEEEEECccchhhhh------------H-HHHHHHHHH
Confidence 12 268999999999998665443 33334433 799999999999865421 1 123456677
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.++ ++++++||++|.|+++++++|.+.+...
T Consensus 140 ~lg-~~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 140 RLG-CPVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp HHT-SCEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred hcC-CCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 777 7999999999999999999998877644
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=167.72 Aligned_cols=159 Identities=18% Similarity=0.162 Sum_probs=112.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCccc--------cccCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY--------DRLRPL 73 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~--------~~~~~~ 73 (195)
.+..+|+++|.+|||||||+++|++..+. .....|+..........++ ..+.+|||||.... ......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHH
Confidence 56778999999999999999999998764 2233344433333333444 56679999998763 344556
Q ss_pred CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 74 SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
+++.+|++++|+|++++.+..+ ..+...+....++.|+++|+||+|+...... ..+....+ .+
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~------------~~~~~~~~---~~ 145 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPEE------------AMKAYHEL---LP 145 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHHH------------HHHHHHHT---ST
T ss_pred HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchHH------------HHHHHHHh---cC
Confidence 7899999999999998755443 2234556555567999999999999765320 01122222 34
Q ss_pred CceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
..+++++||++|.|++++++.|.+.+.+
T Consensus 146 ~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 146 EAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp TSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred cCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 4578999999999999999999887643
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-27 Score=165.23 Aligned_cols=166 Identities=15% Similarity=0.074 Sum_probs=107.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCC---CCCcccceeeccceeEEeC-CEEEEEEEEeCCCCcc----------ccc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSF---PGEYVPTVFDNYSAPFTVD-GIPVSLGLWDTAGQED----------YDR 69 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~-~~~~~l~~~D~~G~~~----------~~~ 69 (195)
...++|+|+|.+|+|||||+++|++... .....+++... ....+. .....+.+|||||... +..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI--NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE--EEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce--EEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 4578999999999999999999998752 22222232221 112222 2235667999999432 233
Q ss_pred cCCCCCC---CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH
Q psy10443 70 LRPLSYP---QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ 146 (195)
Q Consensus 70 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (195)
+...+++ .+|++++|+|++++.+.... .|+..+.. .++|+++|+||+|+........ ..++..
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~----------~~~~~~ 170 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTELDR--RMIEWFAP--TGKPIHSLLTKCDKLTRQESIN----------ALRATQ 170 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHGG--GCCCEEEEEECGGGSCHHHHHH----------HHHHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHHHH--HHHHHHHh--cCCCEEEEEeccccCChhhHHH----------HHHHHH
Confidence 3334444 48899999999876443332 35566655 3789999999999976543211 112222
Q ss_pred HHHHHc------CCceeEEeccCCcccHHHHHHHHHHHHcCCCcc
Q psy10443 147 KLANKI------RAVKYMECSALTQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 147 ~~~~~~------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
+....+ ...+++++||++|.|++++|++|.+.+......
T Consensus 171 ~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~~ 215 (223)
T 4dhe_A 171 KSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAAD 215 (223)
T ss_dssp HHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-----
T ss_pred HHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCCc
Confidence 333332 557899999999999999999999998766543
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-27 Score=168.61 Aligned_cols=150 Identities=14% Similarity=0.218 Sum_probs=111.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc----------cCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR----------LRPLSY 75 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~----------~~~~~~ 75 (195)
.+|+++|.+|||||||+++|++.... .++++++.+.....+..++. .+.+||+||+..+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 38999999999999999999987532 33344444445556667776 556999999987764 344456
Q ss_pred --CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 76 --PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 76 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
+++|++|+|+|+++.++...+. ..+... +.|+++|+||+|+..... .. .....+...++
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~----~~l~~~--~~pvilv~NK~Dl~~~~~------------~~-~~~~~l~~~lg 140 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLT----SQLFEL--GKPVVVALNMMDIAEHRG------------IS-IDTEKLESLLG 140 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHH----HHHTTS--CSCEEEEEECHHHHHHTT------------CE-ECHHHHHHHHC
T ss_pred hhCCCCEEEEEeeCCCchhHHHHH----HHHHHc--CCCEEEEEEChhcCCcCC------------cH-HHHHHHHHHcC
Confidence 8899999999999876554433 333333 789999999999876431 11 12455677777
Q ss_pred CceeEEeccCCcccHHHHHHHHHHH
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
++++++||++|.|++++++++.+.
T Consensus 141 -~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 -CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp -SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred -CCEEEEECCCCCCHHHHHHHHHhh
Confidence 799999999999999999999887
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-25 Score=171.51 Aligned_cols=156 Identities=19% Similarity=0.202 Sum_probs=98.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc--------CCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL--------RPLS 74 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--------~~~~ 74 (195)
..++|+++|.+|+|||||+|+|++.. +...+.+|+.+.....+.+++. .+.+|||||+..+... ...+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--MFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--EEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 46899999999999999999999874 3455566666666677777775 4569999998776543 3447
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
++.+|++++|+|++++.+...... +...+.. ..+.|+++|+||+|+..... . ..+.+... +.
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~-l~~~piIvV~NK~Dl~~~~~------------~---~~~~l~~~-~~ 371 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTE-IRELKAA-HPAAKFLTVANKLDRAANAD------------A---LIRAIADG-TG 371 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHH-HHHHHHH-CTTSEEEEEEECTTSCTTTH------------H---HHHHHHHH-HT
T ss_pred cccCCEEEEEEECCCCcchhhhHH-HHHHHHh-cCCCCEEEEEECcCCCCccc------------h---hHHHHHhc-CC
Confidence 889999999999999887753321 2222222 22799999999999976532 1 11233333 12
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.+++++||++|.|+++++++|.+.+.
T Consensus 372 ~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 372 TEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp SCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHh
Confidence 67999999999999999999999887
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=164.00 Aligned_cols=158 Identities=16% Similarity=0.059 Sum_probs=113.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCC-CcccceeeccceeEEeCCEEEEEEEEeCCCCccccc------cCCCCC-
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPG-EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR------LRPLSY- 75 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~------~~~~~~- 75 (195)
|+.++|+++|++|||||||+++|++..+.. .+..++.......+..++.. +.+||+||+..+.. ....++
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFIL 78 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhh
Confidence 467899999999999999999999875532 22223333334455666655 56999999987765 344444
Q ss_pred -CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 76 -PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 76 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
.++|++++|+|+++.+... +|...+... ...|+++++||+|+..... ... +...+.+.++
T Consensus 79 ~~~~d~vi~v~D~~~~~~~~----~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~------------~~~-~~~~l~~~lg- 139 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLMRNL----FLTLELFEM-EVKNIILVLNKFDLLKKKG------------AKI-DIKKMRKELG- 139 (271)
T ss_dssp TTCCSEEEEEEEGGGHHHHH----HHHHHHHHT-TCCSEEEEEECHHHHHHHT------------CCC-CHHHHHHHHS-
T ss_pred ccCCcEEEEEecCCcchhhH----HHHHHHHhc-CCCCEEEEEEChhcCcccc------------cHH-HHHHHHHHcC-
Confidence 6899999999999864322 233333332 1389999999999875432 111 2566777787
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++++++||++|.|+++++..+.+.+...
T Consensus 140 ~~~~~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 140 VPVIPTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHhcc
Confidence 7999999999999999999999987544
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-26 Score=175.87 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=112.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCc----------cccccCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE----------DYDRLRP 72 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~----------~~~~~~~ 72 (195)
..+||+++|.+|||||||+++|++... ...+.+++.+.....+..++.. +.+|||||+. .|...+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHH
Confidence 568999999999999999999998764 3455666666666677778775 5599999973 3332222
Q ss_pred -CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHH-HHHHH
Q psy10443 73 -LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQG-QKLAN 150 (195)
Q Consensus 73 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 150 (195)
.+++.+|++++|+|++++.+.++.. |...+... +.|+++|+||+|+.+... ...++. ..+..
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~~--~~~~~~~~--~~~iiiv~NK~Dl~~~~~------------~~~~~~~~~~~~ 315 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDKR--IAGYAHEA--GKAVVIVVNKWDAVDKDE------------STMKEFEENIRD 315 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHHHT--TCEEEEEEECGGGSCCCT------------THHHHHHHHHHH
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHHH--HHHHHHHc--CCcEEEEEECccCCCcch------------HHHHHHHHHHHH
Confidence 3677899999999999998887763 66666543 799999999999976521 222222 22222
Q ss_pred H---cCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 151 K---IRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 151 ~---~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
. ....+++++||++|.|++++|+.+.+.+..
T Consensus 316 ~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 316 HFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp HCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred hcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 2 234789999999999999999999887653
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.6e-26 Score=174.99 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=117.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCC----------CccccccC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG----------QEDYDRLR 71 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G----------~~~~~~~~ 71 (195)
...++|+++|.+|+|||||+++|++.. ....+.+++.+.....+..++.. +.+||||| ++.|...+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEE--EEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCce--EEEEECCCCCcCcccchHHHHHHHHH
Confidence 357899999999999999999999764 23556666677666777788774 55999999 56665554
Q ss_pred C-CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 72 P-LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 72 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
. .+++.+|++++|+|+++....++. .|...+.. .+.|+++|+||+|+.... ....++..+.++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~~--~~~~~~~~--~~~~~ilv~NK~Dl~~~~------------~~~~~~~~~~~~ 334 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE--AGKAVVIVVNKWDAVDKD------------ESTMKEFEENIR 334 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSCCC------------SSHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHHH--HHHHHHHH--cCCCEEEEEEChhcCCCc------------hHHHHHHHHHHH
Confidence 4 367889999999999986554443 36666655 379999999999997652 244455555555
Q ss_pred Hc----CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 151 KI----RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 151 ~~----~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.. +..+++++||++|.|++++|+++.+.+...
T Consensus 335 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 335 DHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp HHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 43 347899999999999999999999877433
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-26 Score=162.79 Aligned_cols=148 Identities=15% Similarity=0.145 Sum_probs=100.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCC---CcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCC---
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPG---EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQ--- 77 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~--- 77 (195)
.+.++|+++|++|+|||||+++|.+..+.. .+.++....+ ..+.+.+||+||++.+...+..+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 467999999999999999999999987643 2333333222 34567799999999998888888877
Q ss_pred -ccEEEEEEeCC-ChhcHHHHHHhhHHHHhh-----hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 78 -TDVFLICYSVV-SPSSFDNVTSKWYPELKH-----HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 78 -~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
+|++|+|+|++ +++++..... |+..+.. ...++|+++|+||+|+.......... ....++...++.
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~------~~l~~~~~~~~~ 154 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPPSKIK------DALESEIQKVIE 154 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHH------HHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHH------HHHHHHHHHHHH
Confidence 89999999999 8888888775 4444432 23589999999999997653211100 011344556666
Q ss_pred HcCCceeEEeccCCccc
Q psy10443 151 KIRAVKYMECSALTQRG 167 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~ 167 (195)
..+ .+++++||++|.+
T Consensus 155 ~~~-~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 155 RRK-KSLNEVERKINEE 170 (218)
T ss_dssp HHH-HHHHC--------
T ss_pred HHh-ccccccccccccc
Confidence 655 5788888888764
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-25 Score=167.42 Aligned_cols=172 Identities=15% Similarity=0.097 Sum_probs=117.2
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCc--ccce-eec-------------cceeEEe---CCEEEEEEEEeCC
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEY--VPTV-FDN-------------YSAPFTV---DGIPVSLGLWDTA 62 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~--~~t~-~~~-------------~~~~~~~---~~~~~~l~~~D~~ 62 (195)
..++.++|+++|.+|+|||||+++|++....... ..+. ... ....... ......+.+||+|
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 4567899999999999999999999985332211 0000 000 0000000 1233678899999
Q ss_pred CCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccH
Q psy10443 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR 142 (195)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~ 142 (195)
|++.|......++..+|++++|+|++++.+...... |+..+... ...|+++++||+|+........ ..
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~-~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~----------~~ 151 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGII-GVKNLIIVQNKVDVVSKEEALS----------QY 151 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHH-HHHHHHHH-TCCCEEEEEECGGGSCHHHHHH----------HH
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHH-HHHHHHHc-CCCCEEEEEECccccchHHHHH----------HH
Confidence 999999888889999999999999998765555443 54554443 1258999999999976543211 11
Q ss_pred HHHHHHHHHc--CCceeEEeccCCcccHHHHHHHHHHHHcCCCcc
Q psy10443 143 EQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 143 ~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
++..++.... ..++++++||++|.|+++++++|.+.+..+...
T Consensus 152 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~ 196 (403)
T 3sjy_A 152 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRD 196 (403)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCC
Confidence 2233333322 236899999999999999999999987665543
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-25 Score=170.63 Aligned_cols=151 Identities=21% Similarity=0.303 Sum_probs=114.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCc-ccccc--------CCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE-DYDRL--------RPLS 74 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~-~~~~~--------~~~~ 74 (195)
.++|+++|.+|+|||||+|+|++.. +..++.+|+.+.....+.+++.. +.+|||||.. .+... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~--~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE--EEEEECCCccccchhhHHHHHHHHHHHH
Confidence 4899999999999999999999874 35667777777777777888765 5599999987 65432 2345
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
++.+|++|+|+|++++.+.++.. ++..+ .+.|+++|+||+|+... ...++...+.. .+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~--il~~l----~~~piivV~NK~DL~~~--------------~~~~~~~~~~~-~~- 378 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK--ILERI----KNKRYLVVINKVDVVEK--------------INEEEIKNKLG-TD- 378 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH--HHHHH----TTSSEEEEEEECSSCCC--------------CCHHHHHHHHT-CS-
T ss_pred hhcccEEEEEecCCCCCCHHHHH--HHHHh----cCCCEEEEEECcccccc--------------cCHHHHHHHhc-CC-
Confidence 67899999999999988776543 33333 37899999999999653 22233433322 22
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.+++++||++|.|+++++++|.+.+.
T Consensus 379 ~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 379 RHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp TTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57999999999999999999998754
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-25 Score=171.70 Aligned_cols=157 Identities=20% Similarity=0.260 Sum_probs=112.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCC-------C
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPL-------S 74 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~-------~ 74 (195)
...++|+|+|..|+|||||+++|++..+. ....+++.+.......+.+. ..+.+|||||++.+..+... +
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 35789999999999999999999987652 34444555544555566554 26779999999988765433 6
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
++.+|++|+|+|++..+. ...|+..+... ++|+++|+||+|+..... . +....+...++
T Consensus 111 l~~aD~vllVvD~~~~~~----~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~------------~--~~~~~l~~~~g- 169 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPY----EDDVVNLFKEM--EIPFVVVVNKIDVLGEKA------------E--ELKGLYESRYE- 169 (423)
T ss_dssp HTSCSEEEEECSSSCCHH----HHHHHHHHHHT--TCCEEEECCCCTTTTCCC------------T--HHHHHSSCCTT-
T ss_pred HhcCCEEEEEEeCCChHH----HHHHHHHHHhc--CCCEEEEEeCcCCCCccH------------H--HHHHHHHHHcC-
Confidence 788999999999833222 22466676665 899999999999977632 1 44555555666
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++++++||++|.|++++|++|.+.+.+.
T Consensus 170 ~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 170 AKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 6899999999999999999999998554
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=166.92 Aligned_cols=153 Identities=15% Similarity=0.122 Sum_probs=104.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccc---------cccCCCCCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY---------DRLRPLSYP 76 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~---------~~~~~~~~~ 76 (195)
+|+++|.+|||||||+|+|++... ...+.+++.+.......+++..+ .+|||||.+.. ...+..+++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~--~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTF--KLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEE--EEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEE--EEEECCCccccccchHHHHHHHHHHHHHH
Confidence 799999999999999999998763 35555666666667777888765 59999997642 233455789
Q ss_pred CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHH-HHHHHHcCCc
Q psy10443 77 QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQG-QKLANKIRAV 155 (195)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 155 (195)
++|++++|+|++++.+..+. .+...++.. ++|+++|+||+|+.... ..+. .++. .++..
T Consensus 81 ~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~~---------------~~~~~~~~~-~lg~~ 140 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLREF---------------EREVKPELY-SLGFG 140 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHHH---------------HHHTHHHHG-GGSSC
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCcccc---------------HHHHHHHHH-hcCCC
Confidence 99999999999886554432 123333333 78999999999985421 0112 2333 34533
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+++++||++|.|++++++++.+.+.+.
T Consensus 141 ~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 141 EPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp SCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 689999999999999999999988643
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=160.17 Aligned_cols=172 Identities=16% Similarity=0.149 Sum_probs=105.8
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCC---CCCCccc--ceeeccc-eeEE---------e----C--C----EEEE
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDS---FPGEYVP--TVFDNYS-APFT---------V----D--G----IPVS 55 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~--t~~~~~~-~~~~---------~----~--~----~~~~ 55 (195)
|+..+.++|+++|+.++|||||+++|++.. +..+..+ |....+. .... . + + ....
T Consensus 3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 82 (408)
T 1s0u_A 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR 82 (408)
T ss_dssp --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence 455678999999999999999999998542 2222222 2211111 0110 0 1 1 2367
Q ss_pred EEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhc
Q psy10443 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQ 135 (195)
Q Consensus 56 l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~ 135 (195)
+.+||+|||+.|.......+..+|++|+|+|++++.......+ .+..+.. ....|+++++||+|+.....
T Consensus 83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~-l~~~~iivv~NK~Dl~~~~~-------- 152 (408)
T 1s0u_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKE-HLMALEI-LGIDKIIIVQNKIDLVDEKQ-------- 152 (408)
T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHH-HHHHHHH-TTCCCEEEEEECTTSSCTTT--------
T ss_pred EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHH-HHHHHHH-cCCCeEEEEEEccCCCCHHH--------
Confidence 8899999999998877788889999999999996431111111 1122222 12358999999999976531
Q ss_pred CCCCccHHHHHHHHHHc--CCceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 136 NLSPVKREQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
.....+++.++...+ ..++++++||++|+|+++++++|.+.+..+..
T Consensus 153 --~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~ 201 (408)
T 1s0u_A 153 --AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKR 201 (408)
T ss_dssp --TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCCC
T ss_pred --HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc
Confidence 112234555665543 34789999999999999999999998775543
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-23 Score=155.36 Aligned_cols=161 Identities=18% Similarity=0.201 Sum_probs=113.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc---------CCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL---------RPL 73 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~---------~~~ 73 (195)
...++|+++|.+|||||||+++|++.... ..+..++..........++ ..+.+|||||....... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 35689999999999999999999987542 1222222222122222333 45779999997553211 112
Q ss_pred CCCCccEEEEEEeCCChh--cHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 74 SYPQTDVFLICYSVVSPS--SFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
+...+|++++|+|++++. ++.... .|+..+.....+.|+++|+||+|+..... .++...++..
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~-~~~~~i~~~~~~~piilV~NK~Dl~~~~~--------------~~~~~~~~~~ 307 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQI-HLFEEVHGEFKDLPFLVVINKIDVADEEN--------------IKRLEKFVKE 307 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHH-HHHHHHHHHTTTSCEEEEECCTTTCCHHH--------------HHHHHHHHHH
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHH-HHHHHHHHhcCCCCEEEEEECcccCChHH--------------HHHHHHHHHh
Confidence 344689999999999877 566655 47777776555899999999999976532 1334455555
Q ss_pred cCCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.+ ++++++||++|+|+++++++|.+.+...
T Consensus 308 ~~-~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 308 KG-LNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TT-CCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred cC-CCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 55 6899999999999999999999987543
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-25 Score=174.34 Aligned_cols=162 Identities=17% Similarity=0.197 Sum_probs=113.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEe-CCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTV-DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
+++.+|+++|++++|||||+++|.+..+...+.++....+ ...+.. ++. .+.|||||||+.|..++..++..+|++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~--~i~~iDTPGhe~f~~~~~~~~~~aD~v 79 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGE--KITFLDTPGHAAFSAMRARGTQVTDIV 79 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSS--CCBCEECSSSCCTTTSBBSSSBSBSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCC--EEEEEECCChHHHHHHHHHHHccCCEE
Confidence 4678999999999999999999998654333333332222 222333 233 566999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHH---HHHc-CCcee
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKL---ANKI-RAVKY 157 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~ 157 (195)
|+|+|+++....+... ++..+.. .++|+++++||+|+..... .... .+...+ +..+ +.+++
T Consensus 80 ILVVDa~dg~~~qt~e--~l~~~~~--~~vPiIVViNKiDl~~~~~----------~~v~-~~l~~~~~~~e~~~~~~~i 144 (537)
T 3izy_P 80 ILVVAADDGVMKQTVE--SIQHAKD--AHVPIVLAINKCDKAEADP----------EKVK-KELLAYDVVCEDYGGDVQA 144 (537)
T ss_dssp EEECBSSSCCCHHHHH--HHHHHHT--TTCCEEECCBSGGGTTTSC----------CSSS-SHHHHTTSCCCCSSSSEEE
T ss_pred EEEEECCCCccHHHHH--HHHHHHH--cCCcEEEEEecccccccch----------HHHH-HHHHhhhhhHHhcCCCceE
Confidence 9999999876665543 2233333 3789999999999875421 1111 111111 1111 23689
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+++||++|.|+++++++|...+...
T Consensus 145 v~vSAktG~GI~eLle~I~~l~~~~ 169 (537)
T 3izy_P 145 VHVSALTGENMMALAEATIALAEML 169 (537)
T ss_dssp CCCCSSSSCSSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCchhHHHHHHHhhhcc
Confidence 9999999999999999999887544
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=166.58 Aligned_cols=167 Identities=16% Similarity=0.179 Sum_probs=116.3
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcC--CCCCC-----cccce------eecc---ceeEEe---CCEEEEEEEEeC
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTD--SFPGE-----YVPTV------FDNY---SAPFTV---DGIPVSLGLWDT 61 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~~-----~~~t~------~~~~---~~~~~~---~~~~~~l~~~D~ 61 (195)
|...+..||+++|+.++|||||+++|+.. .+... ...+. +..+ ...+.+ ++..+.+++|||
T Consensus 1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT 80 (600)
T 2ywe_A 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT 80 (600)
T ss_dssp CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence 43355679999999999999999999762 22110 00010 0011 112222 456789999999
Q ss_pred CCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCcc
Q psy10443 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVK 141 (195)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~ 141 (195)
||+.+|...+..+++.+|++|+|+|+++..+.+.... |...... ++|+++++||+|+.....
T Consensus 81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~-~~~a~~~---~ipiIvviNKiDl~~a~~-------------- 142 (600)
T 2ywe_A 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVAN-FWKAVEQ---DLVIIPVINKIDLPSADV-------------- 142 (600)
T ss_dssp CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHH-HHHHHHT---TCEEEEEEECTTSTTCCH--------------
T ss_pred CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHHHC---CCCEEEEEeccCccccCH--------------
Confidence 9999998888888999999999999999887777653 6554443 799999999999976421
Q ss_pred HHHHHHHHHHcCC--ceeEEeccCCcccHHHHHHHHHHHHcCCCcc
Q psy10443 142 REQGQKLANKIRA--VKYMECSALTQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 142 ~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
.+...++...++. .+++++||++|.|+++++++|.+.+..+...
T Consensus 143 ~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~ 188 (600)
T 2ywe_A 143 DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPKGD 188 (600)
T ss_dssp HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccccc
Confidence 1223344444442 2489999999999999999999999876543
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-24 Score=165.43 Aligned_cols=154 Identities=22% Similarity=0.314 Sum_probs=107.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc--------CCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL--------RPLS 74 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--------~~~~ 74 (195)
..++|+++|.+|+|||||+|+|++.. +.....+++.+.....+.+++..+ .+|||||...+... ...+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v--~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPV--QVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEE--EECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEE--EEEECCccccchhHHHHHHHHHHhhh
Confidence 46899999999999999999999863 244555666666666777888655 59999997665432 2346
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
++.+|++++|+|++++.+.... .|+..+. +.|+++|+||+|+....... ....+. ..
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~~--~i~~~l~----~~piivV~NK~Dl~~~~~~~--------------~~~~~~---~~ 357 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGDQ--EIYEQVK----HRPLILVMNKIDLVEKQLIT--------------SLEYPE---NI 357 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHHH--HHHHHHT----TSCEEEEEECTTSSCGGGST--------------TCCCCT---TC
T ss_pred hhcCCEEEEEeccCCCCCHHHH--HHHHhcc----CCcEEEEEECCCCCcchhhH--------------HHHHhc---cC
Confidence 7899999999999988776552 3555554 37999999999997654211 000001 23
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
.+++++||++|.|+++++++|.+.+....
T Consensus 358 ~~~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 358 TQIVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 67999999999999999999999887654
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-24 Score=168.23 Aligned_cols=164 Identities=18% Similarity=0.221 Sum_probs=113.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC--CCCC-----Ccccc------eeecc---ceeEEe---CCEEEEEEEEeCCCCc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD--SFPG-----EYVPT------VFDNY---SAPFTV---DGIPVSLGLWDTAGQE 65 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~--~~~~-----~~~~t------~~~~~---~~~~~~---~~~~~~l~~~D~~G~~ 65 (195)
+..||+++|+.++|||||+++|+.. .+.. ....+ .+..+ ...+.+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4579999999999999999999862 1111 11111 00111 112222 5567899999999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHH
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQG 145 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
+|...+..+++.+|++|+|+|+++..+.+.... |...... ++|+++++||+|+..... .+..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~~~---~ipiIvViNKiDl~~a~~--------------~~v~ 144 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAMEM---DLEVVPVLNKIDLPAADP--------------ERVA 144 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHHHT---TCEEEEEEECTTSTTCCH--------------HHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHHC---CCCEEEeeeccCcccccH--------------HHHH
Confidence 999888888999999999999999877776653 6555443 789999999999976421 2223
Q ss_pred HHHHHHcCC--ceeEEeccCCcccHHHHHHHHHHHHcCCCccc
Q psy10443 146 QKLANKIRA--VKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186 (195)
Q Consensus 146 ~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~ 186 (195)
.++...++. .+++++||++|.|+++++++|.+.+..+....
T Consensus 145 ~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~ 187 (599)
T 3cb4_D 145 EEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDP 187 (599)
T ss_dssp HHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCT
T ss_pred HHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCccccc
Confidence 445555542 24899999999999999999999998776443
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.4e-24 Score=158.16 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=92.6
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCC----------ChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeC
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVV----------SPSSFDNVTSKWYPELKHH--CPDAPIILVGTK 119 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK 119 (195)
..+.+++||++|++.++..|..++++++++|+|||++ +..++.+... |+..+... .+++|+++++||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~-~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHH-HHHHHHhccccCCCeEEEEEEC
Confidence 5688999999999999999999999999999999998 7888888875 55555432 468999999999
Q ss_pred CCcccchHhhhh------hhhcCC---CCccHHHHHHHHHH---------------cCCceeEEeccCCcccHHHHHHHH
Q psy10443 120 IDLREDRETLNL------LSEQNL---SPVKREQGQKLANK---------------IRAVKYMECSALTQRGLRQVFDEA 175 (195)
Q Consensus 120 ~D~~~~~~~~~~------~~~~~~---~~~~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~~v~~~~~~l 175 (195)
+|+......... ..+..+ .....+++..++.. ...+.+++|||+++.|++++|.++
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 998643211000 000000 00124556666442 123457899999999999999999
Q ss_pred HHHHcCC
Q psy10443 176 VRAVLRP 182 (195)
Q Consensus 176 ~~~~~~~ 182 (195)
.+.+.+.
T Consensus 340 ~~~I~~~ 346 (354)
T 2xtz_A 340 DETLRRR 346 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988643
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-24 Score=159.21 Aligned_cols=130 Identities=14% Similarity=0.223 Sum_probs=97.4
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCC----------hhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCC
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVS----------PSSFDNVTSKWYPELKHH--CPDAPIILVGTKI 120 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~ 120 (195)
.+.+++||++|++.++..|..++++++++|||+|+++ ..++.+... |+..+... ..++|+++++||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~-~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK-LFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH-HHHHHHcCccccCCcEEEEEECc
Confidence 4678899999999999999999999999999999999 456887775 55555442 4689999999999
Q ss_pred CcccchHhhhhhhhcC---CCCccHHHHHHHHHH----------cCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 121 DLREDRETLNLLSEQN---LSPVKREQGQKLANK----------IRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 121 D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
|+.............- ...+..+++..++.. ...+.+++|||+++.|++++|.++.+.+.+..
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence 9864321100000000 012556778887762 23478999999999999999999999887543
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-23 Score=159.94 Aligned_cols=168 Identities=17% Similarity=0.161 Sum_probs=114.7
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcC--------CCCCCc---cc-----ceeecc-ceeEEeCCEEEEEEEEeCCCCc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTD--------SFPGEY---VP-----TVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~--------~~~~~~---~~-----t~~~~~-~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
+++.++|+++|.+++|||||+++|++. .+. .+ +. +.+..+ .....++.....+.+||+||++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~-~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVK-DYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCC-CHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCcccccc-chhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 467799999999999999999999873 111 11 00 001111 1122233334567799999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
+|......++..+|++|+|+|+++....+.. .|+..+... ++| +++++||+|+........ ...++
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~--~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~---------~~~~~ 153 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFMNKVDMVDDPELLD---------LVEME 153 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCCCHHHHH---------HHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEECccccCcHHHHH---------HHHHH
Confidence 9988888889999999999999987654433 244555443 678 889999999975321100 11235
Q ss_pred HHHHHHHcCC----ceeEEeccCCccc------------------HHHHHHHHHHHHcCCCc
Q psy10443 145 GQKLANKIRA----VKYMECSALTQRG------------------LRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 145 ~~~~~~~~~~----~~~~~~Sa~~~~~------------------v~~~~~~l~~~~~~~~~ 184 (195)
...+...++. ++++++||++|.| +.++++.|.+.+..+..
T Consensus 154 ~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~ 215 (405)
T 2c78_A 154 VRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVR 215 (405)
T ss_dssp HHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCC
Confidence 5666666652 6899999999988 78888888887765543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-23 Score=151.81 Aligned_cols=159 Identities=16% Similarity=0.110 Sum_probs=110.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCc---------cccccCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE---------DYDRLRP 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~---------~~~~~~~ 72 (195)
.+..+|+++|.+|+|||||+++|++..+. .....++.......+..++ ..+.+|||||+. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 45678999999999999999999987642 2222333332233334444 456699999987 3445567
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI 152 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
.+++.+|++++|+|+++ -+-. ...+...+.. .+.|+++++||+|+..... ...+....+...+
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~~~--~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~------------~~~~~l~~l~~~~ 146 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WTPD--DEMVLNKLRE--GKAPVILAVNKVDNVQEKA------------DLLPHLQFLASQM 146 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CCHH--HHHHHHHHHS--SSSCEEEEEESTTTCCCHH------------HHHHHHHHHHTTS
T ss_pred HHHhcCCEEEEEEeCCC-CCHH--HHHHHHHHHh--cCCCEEEEEECcccCccHH------------HHHHHHHHHHHhc
Confidence 78999999999999977 2222 2112233332 3789999999999876211 1223445555555
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
+...++++||+++.|++++++.+.+.+.+
T Consensus 147 ~~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 147 NFLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred CcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 64478999999999999999999987653
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=163.37 Aligned_cols=163 Identities=19% Similarity=0.143 Sum_probs=111.6
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCC----C---CCCcc-cceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCC
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDS----F---PGEYV-PTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLS 74 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~----~---~~~~~-~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~ 74 (195)
.++.++|+++|..++|||||+++|++.. . ..+.. ..+.+.....+.+++ +.+.+||+||++.|......+
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 4678999999999999999999999865 1 11111 111111122344455 456699999999998888888
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc--
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI-- 152 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 152 (195)
+..+|++|+|+|+++...-+... ++..+... ++|+++++||+|+....... ...++...+....
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e--~l~~~~~~--~ip~IvviNK~Dl~~~~~~~----------~~~~~l~~~l~~~~~ 159 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGE--HMLILDHF--NIPIIVVITKSDNAGTEEIK----------RTEMIMKSILQSTHN 159 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCBCEEEECTTSSCHHHHH----------HHHHHHHHHHHHSSS
T ss_pred HhhCCEEEEEEecCCCccHHHHH--HHHHHHHc--CCCEEEEEECCCcccchhHH----------HHHHHHHHHHhhhcc
Confidence 99999999999999843222221 22233332 68889999999997642211 1223455555544
Q ss_pred -CCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 153 -RAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 153 -~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
...+++++||++|+|+++++++|.+.+..
T Consensus 160 ~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 160 LKNSSIIPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp GGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence 23689999999999999999999997753
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-24 Score=159.58 Aligned_cols=159 Identities=21% Similarity=0.224 Sum_probs=115.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCc----cccccCCCCCC---Ccc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE----DYDRLRPLSYP---QTD 79 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~----~~~~~~~~~~~---~~d 79 (195)
+|+++|.+|||||||+++|++.... ..+..++.......+.+++ ...+.+||+||.. .+..+...+++ .++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 6899999999999999999986532 3344344333333444543 1356799999953 33334444544 499
Q ss_pred EEEEEEeCCC---hhcHHHHHHhhHHHHhhhC---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 80 VFLICYSVVS---PSSFDNVTSKWYPELKHHC---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 80 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
++|+|+|+++ ++++++.. .|...+..+. .++|+++|+||+|+.... +....+...+.
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----------------e~~~~l~~~l~ 301 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKMDMPEAA----------------ENLEAFKEKLT 301 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----------------HHHHHHHHHCC
T ss_pred EEEEEEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECccCCCCH----------------HHHHHHHHHhh
Confidence 9999999998 77787776 4777777653 479999999999986542 23455555554
Q ss_pred C-ceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 154 A-VKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 154 ~-~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
. .+++++||+++.|+++++.+|.+.+.+...
T Consensus 302 ~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 302 DDYPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp SCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred cCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 2 578999999999999999999999876544
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-23 Score=149.51 Aligned_cols=169 Identities=14% Similarity=0.125 Sum_probs=105.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC-CCCCcccc--eeeccceeEEeCCEEEEEEEEeCCCCccccccCC--------
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS-FPGEYVPT--VFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRP-------- 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~-~~~~~~~t--~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~-------- 72 (195)
.+.++|+|+|.+|||||||+++|++.. +...+.++ +..........++.. +.+|||||+..+.....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE--IVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEE--EEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCE--EEEEECcCCCCCCCCHHHHHHHHHH
Confidence 357999999999999999999999876 44444443 333334455566654 55999999876543322
Q ss_pred ---CCCCCccEEEEEEeCCChhcHHH-HHHhhHHHHhhhCCCCcEEEEee-CCCcccchHhhhhhhhcCCCCccHHHHHH
Q psy10443 73 ---LSYPQTDVFLICYSVVSPSSFDN-VTSKWYPELKHHCPDAPIILVGT-KIDLREDRETLNLLSEQNLSPVKREQGQK 147 (195)
Q Consensus 73 ---~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~vvv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (195)
.+++.+|++|+|+|+++...... .. .++..+.......|.++++| |+|+..... ...... ...++...
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~-~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~-~~~i~~-----~~~~~~~~ 170 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGEDAMGHTIVLFTHKEDLNGGSL-MDYMHD-----SDNKALSK 170 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHH-HHHHHHHCGGGGGGEEEEEECGGGGTTCCH-HHHHHH-----CCCHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHH-HHHHHHhCchhhccEEEEEEcccccCCccH-HHHHHh-----cchHHHHH
Confidence 26789999999999986322221 11 12222211111356666666 999974321 110000 01133444
Q ss_pred HHHHcCCc--ee--EEeccCCcccHHHHHHHHHHHHcC
Q psy10443 148 LANKIRAV--KY--MECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 148 ~~~~~~~~--~~--~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
+...++.. .+ +++||+++.|++++|.+|.+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 171 LVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 55555431 12 789999999999999999998764
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-24 Score=167.26 Aligned_cols=154 Identities=15% Similarity=0.135 Sum_probs=99.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCc--------cccccCCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE--------DYDRLRPLSY 75 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~--------~~~~~~~~~~ 75 (195)
..+|+++|.+|||||||+++|++..+. ....+++.+.......+++. .+.+|||||++ .+...+..++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY--DFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSS--CCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCc--eEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 478999999999999999999987542 33344444443444444454 56699999985 4555566778
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
+.+|++|+|+|++++.+..+. .+...++. .+.|+++|+||+|+..... . ..++. .++.-
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~--~~~~~l~~--~~~pvilv~NK~D~~~~~~------------~----~~~~~-~lg~~ 139 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADE--EVAKILYR--TKKPVVLAVNKLDNTEMRA------------N----IYDFY-SLGFG 139 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHH--HHHHHHTT--CCSCEEEEEECCCC-----------------C----CCSSG-GGSSC
T ss_pred HhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCccchh------------h----HHHHH-HcCCC
Confidence 899999999999987665543 24444543 3789999999999865421 0 00111 23323
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+++++||++|.|+.++++++.+.+.+.
T Consensus 140 ~~~~iSA~~g~gv~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 140 EPYPISGTHGLGLGDLLDAVAEHFKNI 166 (436)
T ss_dssp CCEECBTTTTBTHHHHHHHHHHTGGGC
T ss_pred CeEEEeCcCCCChHHHHHHHHHhcCcc
Confidence 689999999999999999999988643
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=157.28 Aligned_cols=159 Identities=20% Similarity=0.165 Sum_probs=106.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccC-----------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLR----------- 71 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~----------- 71 (195)
..++|+++|.+|||||||+++|++... ..++.+++.+.....+.+++..+ .+||+||..+.....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~--~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY--VFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE--EESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE--EEEECCCCccccccchhhHHHHHHHH
Confidence 458999999999999999999998754 34555666666667778888755 599999975443221
Q ss_pred -CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH-HHH
Q psy10443 72 -PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ-KLA 149 (195)
Q Consensus 72 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 149 (195)
..+++.+|++++|+|+++..+.++.. +...+.. .+.|+++++||+|+..... ...++.. .+.
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~--i~~~l~~--~~~~~ilv~NK~Dl~~~~~------------~~~~~~~~~~~ 320 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQR--MAGLMER--RGRASVVVFNKWDLVVHRE------------KRYDEFTKLFR 320 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHHH--TTCEEEEEEECGGGSTTGG------------GCHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHH--HHHHHHH--cCCCEEEEEECccCCCchh------------hHHHHHHHHHH
Confidence 12345689999999999876665432 3344443 3789999999999976431 1112221 222
Q ss_pred HH---cCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 150 NK---IRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 150 ~~---~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
.. ....+++++||++|.|++++|+.+.+.+..
T Consensus 321 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 321 EKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp HHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 22 233689999999999999999999887654
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=154.54 Aligned_cols=167 Identities=13% Similarity=0.079 Sum_probs=112.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC-------CCCC--ccccee-----ecc-ceeEEeCCEEEEEEEEeCCCCccccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS-------FPGE--YVPTVF-----DNY-SAPFTVDGIPVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~-------~~~~--~~~t~~-----~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~ 69 (195)
+.+||+++|.+++|||||+++|++.. +... .+.+.. ... .....+......+.+||+||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 57899999999999999999998731 1100 000000 000 01122333345677999999999988
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHH
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKL 148 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (195)
....+++.+|++|+|+|+++....+... +| ..+... ++| +++++||+|+........ ...++..++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l-~~~~~~--~vp~iivviNK~Dl~~~~~~~~---------~~~~~~~~~ 148 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTRE-HL-LLARQI--GVEHVVVYVNKADAVQDSEMVE---------LVELEIREL 148 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHH-HH-HHHHHT--TCCCEEEEEECGGGCSCHHHHH---------HHHHHHHHH
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHH-HH-HHHHHc--CCCeEEEEEECcccCCCHHHHH---------HHHHHHHHH
Confidence 8888899999999999999865544433 23 334333 688 689999999975321100 122456667
Q ss_pred HHHcC----CceeEEeccCCccc----------HHHHHHHHHHHHcCCCc
Q psy10443 149 ANKIR----AVKYMECSALTQRG----------LRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 149 ~~~~~----~~~~~~~Sa~~~~~----------v~~~~~~l~~~~~~~~~ 184 (195)
...++ .++++++||++|.| +.++++.|.+.+..+..
T Consensus 149 l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~ 198 (397)
T 1d2e_A 149 LTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTR 198 (397)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCC
Confidence 77665 26899999999874 89999999988775543
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.7e-23 Score=156.52 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=110.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCC---CCCCccc--ceeeccc-eeE---------Ee----C--C----EEEEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDS---FPGEYVP--TVFDNYS-APF---------TV----D--G----IPVSLG 57 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~--t~~~~~~-~~~---------~~----~--~----~~~~l~ 57 (195)
....++|+++|+.++|||||+++|++.. +..+..+ |....+. ... .. . + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 3567999999999999999999998542 2222212 2211111 011 00 1 1 136788
Q ss_pred EEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCC
Q psy10443 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNL 137 (195)
Q Consensus 58 ~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~ 137 (195)
+||+||++.|.......+..+|++|+|+|+++........+++ ..+... ...|+++++||+|+.......
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~~-~~~~iivviNK~Dl~~~~~~~-------- 156 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQII-GQKNIIIAQNKIELVDKEKAL-------- 156 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHHHHH-TCCCEEEEEECGGGSCHHHHH--------
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc-CCCcEEEEEECccCCCHHHHH--------
Confidence 9999999998877777788899999999999643111111112 222222 135899999999997653211
Q ss_pred CCccHHHHHHHHHHc--CCceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 138 SPVKREQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
...+++..+.... ..++++++||++|.|+++++++|.+.+..+..
T Consensus 157 --~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~ 203 (410)
T 1kk1_A 157 --ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKR 203 (410)
T ss_dssp --HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred --HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc
Confidence 1123344444432 33789999999999999999999998776543
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-23 Score=153.77 Aligned_cols=131 Identities=14% Similarity=0.175 Sum_probs=95.9
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCC----------ChhcHHHHHHhhHHHHhh-h-CCCCcEEEEeeCC
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVV----------SPSSFDNVTSKWYPELKH-H-CPDAPIILVGTKI 120 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~-~~~~p~vvv~nK~ 120 (195)
.+.+++||++||+.++..|..|+++++++|+|+|++ +..++.+... |+..+.. . ..++|+++++||+
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~-~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHTSGGGTTCEEEEEEECH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH-HHHHHhhhhccCCceEEEEEECc
Confidence 367889999999999999999999999999999665 6677777765 4444433 2 4689999999999
Q ss_pred CcccchHhhhhhh----hcCCCCccHHHHHHHHH---------HcCCceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 121 DLREDRETLNLLS----EQNLSPVKREQGQKLAN---------KIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 121 D~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---------~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
|+........... +..-...+.+++..+.. ....+.+++|||+++.|++.+|..+.+.+.+..-
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l 321 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 321 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhH
Confidence 9875432111111 11112356677777743 1123678999999999999999999999886543
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-22 Score=155.61 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=81.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC-----------------CCc------ccceeeccceeEEeCCEEEEEEEEeC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP-----------------GEY------VPTVFDNYSAPFTVDGIPVSLGLWDT 61 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~-----------------~~~------~~t~~~~~~~~~~~~~~~~~l~~~D~ 61 (195)
+..+|+++|.+|+|||||+++|+...-. ..+ ...+.......+..++ +.+++|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence 4579999999999999999999621100 000 0001111112233444 56779999
Q ss_pred CCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
||+.+|...+..+++.+|++|+|+|+++....+... .| ..+... ++|+++++||+|+...
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~-~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LM-EVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HH-HHHHTT--TCCEEEEEECTTSCCS
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HH-HHHHHc--CCCEEEEEeCCCCccc
Confidence 999999999999999999999999999877766654 24 333333 7899999999999654
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-22 Score=148.33 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=94.8
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCC----------ChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCC
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVV----------SPSSFDNVTSKWYPELKHH-CPDAPIILVGTKID 121 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D 121 (195)
.+.+++||++||+.++..|..|+++++++|+|+|++ +..++.+....|...+... ..++|+++++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 467889999999999999999999999999999998 6788888775344444332 46899999999999
Q ss_pred cccchHhhhhhhhcCC---CCccHHHHHHHHH-Hc-------------------------CCceeEEeccCCcccHHHHH
Q psy10443 122 LREDRETLNLLSEQNL---SPVKREQGQKLAN-KI-------------------------RAVKYMECSALTQRGLRQVF 172 (195)
Q Consensus 122 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~-------------------------~~~~~~~~Sa~~~~~v~~~~ 172 (195)
+.............-+ .....+++..|+. .+ ..+.+++|||+++.|++.+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 9764332111111110 1123455555443 23 23678999999999999999
Q ss_pred HHHHHHHcC
Q psy10443 173 DEAVRAVLR 181 (195)
Q Consensus 173 ~~l~~~~~~ 181 (195)
..+.+.+.+
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998876
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=151.80 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=87.6
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCC----------hhcHHHHHHhhHHHHhh--hCCCCcEEEEeeCC
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVS----------PSSFDNVTSKWYPELKH--HCPDAPIILVGTKI 120 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~~p~vvv~nK~ 120 (195)
.+.+.+||++|++.++..|..++++++++|||+|+++ ..++.+... |+..+.. ...++|+++++||+
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~-~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN-IFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH-HHHHHhcchhhCCCCEEEEEECh
Confidence 3678899999999999999999999999999999999 678888875 5444443 24689999999999
Q ss_pred CcccchHhhhhhhhc----CCCCccHHHHHHHHH-------H---cCCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 121 DLREDRETLNLLSEQ----NLSPVKREQGQKLAN-------K---IRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 121 D~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------~---~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
|+............. ....++.+++..++. . ...+.+++|||+++.|++++|.++.+.+.+.
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD 354 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence 986432110000000 001145566776652 1 1236789999999999999999999988654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-22 Score=141.31 Aligned_cols=166 Identities=17% Similarity=0.087 Sum_probs=104.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCccc---ceeeccceeEEeCCEEEEEEEEeCCCCc-----------cccc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVP---TVFDNYSAPFTVDGIPVSLGLWDTAGQE-----------DYDR 69 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~l~~~D~~G~~-----------~~~~ 69 (195)
...++|+++|.+|||||||+++|++..+.....+ ++.........+++.. +.+|||||.. .+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETE--LVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEE--EEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCce--EEEEECCCccCCCCCHHHHHHHHHH
Confidence 4579999999999999999999999776444333 2233333455566654 5599999943 3444
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH---CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ 146 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (195)
....+++++|++|+|+|+++...... .|+..+... ....|+++|+||+|+.......... ....+..+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~---~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i------~~~~~~l~ 175 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEH---KATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYL------REAPEDIQ 175 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHH---HHHHHHHHHHHHHHGGGEEEEEECGGGC------------------CHHHH
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHH---HHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHH------HhchHHHH
Confidence 45556788999999999976544221 122222211 1246999999999987653221110 01123567
Q ss_pred HHHHHcCCceeEEeccC-----CcccHHHHHHHHHHHHcC
Q psy10443 147 KLANKIRAVKYMECSAL-----TQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 147 ~~~~~~~~~~~~~~Sa~-----~~~~v~~~~~~l~~~~~~ 181 (195)
.+...++ ..++.++.. +..++.+++..+.+.+.+
T Consensus 176 ~l~~~~~-~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 176 DLMDIFG-DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHHHHS-SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcC-CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 7778877 456666655 347899999998887754
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=153.55 Aligned_cols=159 Identities=15% Similarity=0.124 Sum_probs=101.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCCc------------------------------ccceeeccceeEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGEY------------------------------VPTVFDNYSAPFTVDG 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~~ 51 (195)
+..++|+++|.+++|||||+++|+... +.... ...+.+.....+..++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 457999999999999999999995531 11100 0111111112223333
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcH---H---HHHHhhHHHHhhhCCCCc-EEEEeeCCCccc
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSF---D---NVTSKWYPELKHHCPDAP-IILVGTKIDLRE 124 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~---~---~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~ 124 (195)
..+.+||+||+++|......+++.+|++|+|+|+++.... . .... .+..+.. .++| +++++||+|+..
T Consensus 95 --~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e-~l~~~~~--~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 95 --KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAKT--AGVKHLIVLINKMDDPT 169 (439)
T ss_pred --eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHH-HHHHHHH--cCCCeEEEEeecCCCcc
Confidence 4677999999999998888899999999999999986421 0 1111 2222222 2567 999999999864
Q ss_pred chHhhhhhhhcCCCCccHHHHHHHHHHcC-----CceeEEeccCCcccHHHHHH
Q psy10443 125 DRETLNLLSEQNLSPVKREQGQKLANKIR-----AVKYMECSALTQRGLRQVFD 173 (195)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~~~~ 173 (195)
....... .....++...+...++ .++++++||++|.|+.++++
T Consensus 170 ~~~~~~~------~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNER------YEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHH------HHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 3211100 0012234455555544 35799999999999998654
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-23 Score=160.09 Aligned_cols=162 Identities=15% Similarity=0.140 Sum_probs=103.6
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcC--CCCCCc------------------------------ccceeeccceeEE
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTD--SFPGEY------------------------------VPTVFDNYSAPFT 48 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~~~------------------------------~~t~~~~~~~~~~ 48 (195)
|..++.+||+++|.+++|||||+++|+.. .+.... ...+.+.... .
T Consensus 1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~--~ 78 (435)
T 1jny_A 1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFM--R 78 (435)
T ss_dssp ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------C--E
T ss_pred CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEE--E
Confidence 66778899999999999999999999864 332111 0011111111 2
Q ss_pred eCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh-----CCCC-cEEEEeeCCCc
Q psy10443 49 VDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-----CPDA-PIILVGTKIDL 122 (195)
Q Consensus 49 ~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~-p~vvv~nK~D~ 122 (195)
++...+.+.+||+||+++|...+..+++.+|++|+|+|+++ .+++.... |....... ..++ |+++++||+|+
T Consensus 79 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~-~~~qt~~~~~~~~~~~~~~iivviNK~Dl 156 (435)
T 1jny_A 79 FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMS-VEGQTREHIILAKTMGLDQLIVAVNKMDL 156 (435)
T ss_dssp EECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHS-TTCHHHHHHHHHHHTTCTTCEEEEECGGG
T ss_pred EecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccccc-cchHHHHHHHHHHHcCCCeEEEEEEcccC
Confidence 22334567799999999998888889999999999999998 55554331 22111111 1144 68999999999
Q ss_pred ccchHhhhhhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHHHHH
Q psy10443 123 REDRETLNLLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLRQVF 172 (195)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~~ 172 (195)
......... .....+++..+...++ .++++++||++|+|+.+++
T Consensus 157 ~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 157 TEPPYDEKR------YKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp SSSTTCHHH------HHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred CCccccHHH------HHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 763100000 0022345667777665 2689999999999997543
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.1e-23 Score=149.51 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=91.1
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCC-CCCc-------ccceeec-cceeEEeCCEEEEEEEEeCCCCccccc----
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSF-PGEY-------VPTVFDN-YSAPFTVDGIPVSLGLWDTAGQEDYDR---- 69 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~-------~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~~~~~~---- 69 (195)
+...++|+++|.+|+|||||+|+|++... ...+ .+|.... ....+..++..+.+.+|||||......
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 45579999999999999999999877543 3333 3333222 233344466667899999999743211
Q ss_pred ---cC--------------------CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 70 ---LR--------------------PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 70 ---~~--------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
+. ...-..+|+++++++.+.... ......++..+.. ++|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~-~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL-KPLDIEFMKRLHE---KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSC-CHHHHHHHHHHTT---TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCC-CHHHHHHHHHHhc---cCCEEEEEeccCCCCHH
Confidence 10 111124789999998765321 1222235555554 79999999999987553
Q ss_pred HhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
+... ..+.+.+.....+ ++++.+|+++++|+++++++|.+.+.
T Consensus 161 e~~~----------~~~~i~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 161 ECQQ----------FKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHH----------HHHHHHHHHHHTT-CCCCCC-----------CHHHHHTCS
T ss_pred HHHH----------HHHHHHHHHHHcC-CeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 3111 1123444455555 68999999999999999999988764
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.7e-22 Score=155.95 Aligned_cols=172 Identities=16% Similarity=0.191 Sum_probs=106.5
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcc----cceeeccce-------------eEEeCCEEEEEEEEeCCCCc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYV----PTVFDNYSA-------------PFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~----~t~~~~~~~-------------~~~~~~~~~~l~~~D~~G~~ 65 (195)
++++.+|+++|++++|||||+++|++..+..... ++.+..+.. ...++.....++||||||++
T Consensus 2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 4578899999999999999999998754322111 111111100 00000111247799999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCC---hhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhh---hhhhhcCCCC
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVS---PSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETL---NLLSEQNLSP 139 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~---~~~~~~~~~~ 139 (195)
.|..++..+++.+|++|+|+|+++ +.++..+. .+.. .++|+++++||+|+....... ...+......
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-----~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-----HHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-----HHHH--cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 999999999999999999999998 44443322 2222 378999999999996421100 0000000000
Q ss_pred --cc---HH---HHHHHHHH--------------cCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 140 --VK---RE---QGQKLANK--------------IRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 140 --~~---~~---~~~~~~~~--------------~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
+. .+ +....... ...++++++||++|.|+++++++|...+..
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 00 00 01111111 122589999999999999999999987653
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-22 Score=140.03 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=83.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCC---CcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCC---
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPG---EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQ--- 77 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~--- 77 (195)
.+.++|+++|.+|||||||+++|.+..+.. .+.++... +...+.+.+||+||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee--------eecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 467899999999999999999999876533 11222211 1134566799999999998877777766
Q ss_pred -ccEEEEEEeCC-ChhcHHHHHHhhHHHHhh-----hCCCCcEEEEeeCCCcccc
Q psy10443 78 -TDVFLICYSVV-SPSSFDNVTSKWYPELKH-----HCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 78 -~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~~p~vvv~nK~D~~~~ 125 (195)
+|++++|+|++ +++++..... |+..+.. ..++.|+++|+||+|+...
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred cCCEEEEEEECCCCchhHHHHHH-HHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999999 8888888775 4444332 2358999999999999765
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.87 E-value=8.8e-22 Score=163.33 Aligned_cols=168 Identities=16% Similarity=0.099 Sum_probs=113.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC-------CCC--Ccc-----cceeecc-ceeEEeCCEEEEEEEEeCCCCcccc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS-------FPG--EYV-----PTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYD 68 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~-------~~~--~~~-----~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~ 68 (195)
++.++|+++|++++|||||+++|++.. +.. ..+ .+.+.++ .....++.....+.+||+||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 567999999999999999999998631 000 000 0111111 0112233344667799999999998
Q ss_pred ccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHH
Q psy10443 69 RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQK 147 (195)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (195)
.....++..+|++|+|+|+++....+... ++..+... ++| +++++||+|+........ ...+++..
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTrE--hL~ll~~l--gIP~IIVVINKiDLv~d~e~le---------~i~eEi~e 440 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTRE--HILLGRQV--GVPYIIVFLNKCDMVDDEELLE---------LVEMEVRE 440 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHHH--HHHHHHHH--TCSCEEEEEECCTTCCCHHHHH---------HHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHHH--HHHHHHHc--CCCeEEEEEeecccccchhhHH---------HHHHHHHH
Confidence 88888899999999999999865433322 33444433 688 789999999975322111 12245666
Q ss_pred HHHHcC----CceeEEeccCCc--------ccHHHHHHHHHHHHcCCCc
Q psy10443 148 LANKIR----AVKYMECSALTQ--------RGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 148 ~~~~~~----~~~~~~~Sa~~~--------~~v~~~~~~l~~~~~~~~~ 184 (195)
+...++ .++++++||++| .|+.++++.|.+.+..+..
T Consensus 441 lLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r 489 (1289)
T 3avx_A 441 LLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPER 489 (1289)
T ss_dssp HHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCC
T ss_pred HHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCcc
Confidence 676665 268999999999 6799999999887765443
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-23 Score=160.53 Aligned_cols=161 Identities=15% Similarity=0.199 Sum_probs=106.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCccc-ceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVP-TVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.++.+|+++|++++|||||+++|.+..+.....+ .+.......+..++. .+.|||||||+.|..++..++..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~--~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG--MITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS--CCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE--EEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4778999999999999999999987544322221 111111222333444 4569999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc-CCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI-RAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~S 161 (195)
+|+|+++....+... .| ..+.. .++|+++++||+|+...+.. ........... +...+ +.++++++|
T Consensus 80 LVVda~~g~~~qT~e-~l-~~~~~--~~vPiIVviNKiDl~~~~~~-~v~~~l~~~~~-------~~~~~~~~~~~v~vS 147 (501)
T 1zo1_I 80 LVVAADDGVMPQTIE-AI-QHAKA--AQVPVVVAVNKIDKPEADPD-RVKNELSQYGI-------LPEEWGGESQFVHVS 147 (501)
T ss_dssp EEEETTTBSCTTTHH-HH-HHHHH--TTCCEEEEEECSSSSTTCCC-CTTCCCCCCCC-------CTTCCSSSCEEEECC
T ss_pred EEeecccCccHHHHH-HH-HHHHh--cCceEEEEEEeccccccCHH-HHHHHHHHhhh-------hHHHhCCCccEEEEe
Confidence 999998843322222 12 22222 37899999999999653211 00000000000 01111 236899999
Q ss_pred cCCcccHHHHHHHHHHH
Q psy10443 162 ALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~ 178 (195)
|++|.|+++++++|...
T Consensus 148 AktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 148 AKAGTGIDELLDAILLQ 164 (501)
T ss_dssp TTTCTTCTTHHHHTTTT
T ss_pred eeeccCcchhhhhhhhh
Confidence 99999999999998764
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=145.96 Aligned_cols=163 Identities=17% Similarity=0.156 Sum_probs=107.6
Q ss_pred ceE-EEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCcc---------ccccCCCC
Q psy10443 6 PIK-CVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED---------YDRLRPLS 74 (195)
Q Consensus 6 ~~~-i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~---------~~~~~~~~ 74 (195)
.++ |+++|.+|+|||||+++|++..+. ..+..++.+.....+.+++.. +.+||++|... +...+ ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~--v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK--IMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE--EEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE--EEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 455 999999999999999999987642 233344444555667777754 56999999622 22222 24
Q ss_pred CCCccEEEEEEeCCChh--cHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 75 YPQTDVFLICYSVVSPS--SFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
+..+|++++|+|++++. ...... .|...+... ..+.|+++|+||+|+...... .....+..++..
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~-----------~~~~~~~~l~~~ 322 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGDLY-----------KKLDLVEKLSKE 322 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSCHH-----------HHHHHHHHHHHH
T ss_pred HHhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCchHH-----------HHHHHHHHHHHH
Confidence 67899999999999876 333333 355555543 357899999999998754210 001223334444
Q ss_pred c-C-CceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 152 I-R-AVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 152 ~-~-~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+ . ..+++++||+++.|++++++.|.+.+..+.
T Consensus 323 l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 323 LYSPIFDVIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp HCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred hcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 4 2 246899999999999999999998776544
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=150.50 Aligned_cols=156 Identities=17% Similarity=0.118 Sum_probs=101.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCC----------cccceeecc-----------------c---eeEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGE----------YVPTVFDNY-----------------S---APFTVDG 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~----------~~~t~~~~~-----------------~---~~~~~~~ 51 (195)
+..+||+++|.+++|||||+++|++.. +..+ ..++++..+ + ....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 345899999999999999999998643 1111 112211111 0 0011222
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCC-cEEEEeeCCCcccchHhhh
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA-PIILVGTKIDLREDRETLN 130 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~vvv~nK~D~~~~~~~~~ 130 (195)
....+.+||+||+++|...+..++..+|++|+|+|+++....+... ++..+... ++ |+++++||+|+........
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~--~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR--HSYIASLL--GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCEEEEEEECTTTTTSCHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEEcCcCCcccHHHH
Confidence 3356779999999999888878889999999999999865443332 33333332 44 6999999999976321000
Q ss_pred hhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHHHH
Q psy10443 131 LLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLRQV 171 (195)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~ 171 (195)
....++...+...++ .++++++||++|.|++++
T Consensus 178 --------~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 178 --------ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp --------HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred --------HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 012345566666665 268999999999999874
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=150.95 Aligned_cols=156 Identities=12% Similarity=0.105 Sum_probs=96.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCCc------------------------------ccceeeccceeEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGEY------------------------------VPTVFDNYSAPFTVDG 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~~ 51 (195)
+..+||+++|.+++|||||+++|+... +...+ ...+.+. ....++.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSI--CTSHFST 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCC--CEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEe--eeEEEec
Confidence 456999999999999999999997641 11000 0011111 1122333
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHH-----HHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDN-----VTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
..+.+.|||+||+++|......+++.+|++|+|+|++++.+... .....+..... ....|+++++||+|+....
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGTTC
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCcccch
Confidence 44677899999999999888889999999999999998754321 11112222222 2235799999999997632
Q ss_pred HhhhhhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHHH
Q psy10443 127 ETLNLLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLRQ 170 (195)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~ 170 (195)
.... ....++...+...++ .++++++||++|.|+++
T Consensus 188 ~~~~--------~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRF--------EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHH--------HHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHH--------HHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 1100 011223344444433 36899999999999874
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-22 Score=157.79 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=99.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCC--------CccccccCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG--------QEDYDRLRPL 73 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G--------~~~~~~~~~~ 73 (195)
|+..+|+++|.+|||||||+++|++..+. ..+.+++.+.........+ ..+.+||||| ++.+......
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 45679999999999999999999987542 2333333333333333333 4666999999 5666666777
Q ss_pred CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 74 SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
+++.+|++|+|+|..+.....+. .+...++. .+.|+++|+||+|+..... ...++. ..+
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~d~--~l~~~l~~--~~~pvilV~NK~D~~~~~~----------------~~~e~~-~lg 157 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAADE--EVAKILYR--TKKPVVLAVNKLDNTEMRA----------------NIYDFY-SLG 157 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHHHH--HHHHHHTT--CCSCEEEEEECC-------------------------CCSG-GGS
T ss_pred hHhhCCEEEEEEeCCCCCChHHH--HHHHHHHH--cCCCEEEEEECccchhhhh----------------hHHHHH-HcC
Confidence 88899999999998875443332 24445544 4799999999999864321 000111 122
Q ss_pred CceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.-..+++||++|.|+.++++.+.+.+...
T Consensus 158 ~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 186 (456)
T 4dcu_A 158 FGEPYPISGTHGLGLGDLLDAVAEHFKNI 186 (456)
T ss_dssp SSSEEECCTTTCTTHHHHHHHHHTTGGGS
T ss_pred CCceEEeecccccchHHHHHHHHhhcccc
Confidence 23467999999999999999999877543
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-21 Score=148.41 Aligned_cols=156 Identities=13% Similarity=0.079 Sum_probs=101.4
Q ss_pred CC-CCcceEEEEEcCCCCchHHHHHHhhcC--CCCCC------------------c------------ccceeeccceeE
Q psy10443 1 MS-SGRPIKCVVVGDGTVGKTCMLISYTTD--SFPGE------------------Y------------VPTVFDNYSAPF 47 (195)
Q Consensus 1 m~-~~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~~------------------~------------~~t~~~~~~~~~ 47 (195)
|. ++..++|+++|.+++|||||+++|++. .+... + ...+.+....
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~-- 78 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW-- 78 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE--
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE--
Confidence 65 467899999999999999999999863 22110 0 0001111111
Q ss_pred EeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhc---H----HHHHHhhHHHHhhhCCCCc-EEEEeeC
Q psy10443 48 TVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSS---F----DNVTSKWYPELKHHCPDAP-IILVGTK 119 (195)
Q Consensus 48 ~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~~p-~vvv~nK 119 (195)
.++...+.+.+||+|||++|......++..+|++|+|+|+++... + +... ++..+.. .++| +++++||
T Consensus 79 ~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~--~~~~~~~--~~v~~iivviNK 154 (458)
T 1f60_A 79 KFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE--HALLAFT--LGVRQLIVAVNK 154 (458)
T ss_dssp EEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH--HHHHHHH--TTCCEEEEEEEC
T ss_pred EEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH--HHHHHHH--cCCCeEEEEEEc
Confidence 222334567799999999998888889999999999999987532 2 2221 2222222 2565 8999999
Q ss_pred CCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC----ceeEEeccCCcccHHH
Q psy10443 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA----VKYMECSALTQRGLRQ 170 (195)
Q Consensus 120 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~v~~ 170 (195)
+|+...+.... ....++...+...++. ++++++||++|.|+.+
T Consensus 155 ~Dl~~~~~~~~--------~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 155 MDSVKWDESRF--------QEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp GGGGTTCHHHH--------HHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred cccccCCHHHH--------HHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 99974211000 0123455666666653 6899999999999864
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-23 Score=153.94 Aligned_cols=163 Identities=15% Similarity=0.192 Sum_probs=85.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC-CCCCcc--------cceeec-cceeEEeCCEEEEEEEEeCCCC-------ccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS-FPGEYV--------PTVFDN-YSAPFTVDGIPVSLGLWDTAGQ-------EDY 67 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~-~~~~~~--------~t~~~~-~~~~~~~~~~~~~l~~~D~~G~-------~~~ 67 (195)
..++|+|+|++|+|||||+++|++.. +...+. +|.... ....+..++..+.+.+||+||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 46899999999999999999987643 333222 232222 1223344567778999999998 555
Q ss_pred cccCC-------CCCC-----------CccEEEEEEeCCC-hhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHh
Q psy10443 68 DRLRP-------LSYP-----------QTDVFLICYSVVS-PSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRET 128 (195)
Q Consensus 68 ~~~~~-------~~~~-----------~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~ 128 (195)
..++. .+++ .+++.+++|++++ ..++......|+..+. .++|+++|+||+|+......
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~ev 192 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKER 192 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHHH
Confidence 55543 3332 2222234444443 3444444433544443 57999999999999765431
Q ss_pred hhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 129 LNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
. ...+++..++..++ ++++++||+++.| ++.|..+.+.+.+.
T Consensus 193 ~----------~~k~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 193 E----------RLKKRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp H----------HHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHHHT
T ss_pred H----------HHHHHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 1 01145666666666 7899999999998 88888777776543
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.1e-22 Score=153.45 Aligned_cols=158 Identities=17% Similarity=0.144 Sum_probs=89.4
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhc--CCCCC-------------------------------CcccceeeccceeEEe
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTT--DSFPG-------------------------------EYVPTVFDNYSAPFTV 49 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~--~~~~~-------------------------------~~~~t~~~~~~~~~~~ 49 (195)
.++.++|+++|+.++|||||+++|+. +.+.. ....|.... ...+..
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~-~~~~~~ 118 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVG-RAYFET 118 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC-----------------------------CCEEEC
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEee-eEEEec
Confidence 35678999999999999999999974 22210 000111111 112333
Q ss_pred CCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChh---cHH---HHHHhhHHHHhhhCCCCc-EEEEeeCCCc
Q psy10443 50 DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPS---SFD---NVTSKWYPELKHHCPDAP-IILVGTKIDL 122 (195)
Q Consensus 50 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~vvv~nK~D~ 122 (195)
++ ..+.+||+|||++|...+..++..+|++|+|+|+++.. +++ ....++ ..... .++| +++++||+|+
T Consensus 119 ~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l-~~~~~--~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 119 EH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLART--QGINHLVVVINKMDE 193 (467)
T ss_dssp SS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHH--TTCSSEEEEEECTTS
T ss_pred CC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHH-HHHHH--cCCCEEEEEEECccC
Confidence 44 45679999999999988888999999999999999863 221 111112 22222 3677 9999999999
Q ss_pred ccchHhhhhhhhcCCCCccHHHHHHHHHHc-C-----CceeEEeccCCcccHHHHH
Q psy10443 123 REDRETLNLLSEQNLSPVKREQGQKLANKI-R-----AVKYMECSALTQRGLRQVF 172 (195)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~Sa~~~~~v~~~~ 172 (195)
......... .....++...+...+ + .++++++||++|.|+.+++
T Consensus 194 ~~~~~~~~~------~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 194 PSVQWSEER------YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TTCSSCHHH------HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCccccHHH------HHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 642100000 001223455566554 2 3679999999999998754
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-21 Score=152.81 Aligned_cols=156 Identities=13% Similarity=0.150 Sum_probs=99.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCc--------------------------------ccceeeccceeEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEY--------------------------------VPTVFDNYSAPFTVDG 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~--------------------------------~~t~~~~~~~~~~~~~ 51 (195)
+..+||+++|.+|+|||||+++|++....-.. ..++.+.....+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~- 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence 46799999999999999999999875321100 011111111222333
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhc---H---HHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSS---F---DNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
.+.+.||||||+++|......+++.+|++|+|+|++++.. + .... ..+...... ...|+++|+||+|+...
T Consensus 244 -~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~-e~l~~~~~l-gi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 244 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTK-EHMLLASSL-GIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp -SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHH-HHHHHHHTT-TCCEEEEEEECTTTTTT
T ss_pred -CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHH-HHHHHHHHc-CCCeEEEEEecccccch
Confidence 3567799999999999888999999999999999987421 0 0111 111222221 22459999999999763
Q ss_pred hHhhhhhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHHHH
Q psy10443 126 RETLNLLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLRQV 171 (195)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~ 171 (195)
..... ....++...+...++ .++++++||++|.|+.++
T Consensus 321 ~~~~~--------~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQRF--------EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHHHH--------HHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHHHH--------HHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 21100 011233444555444 268999999999999865
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=145.23 Aligned_cols=150 Identities=7% Similarity=-0.016 Sum_probs=102.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
+|+++|.+++|||||+++|+.. ..|.... ...+..+ .+.+.+||+||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~------giTi~~~-~~~~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK------GTSSDIT-MYNNDKE--GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE------EEESSSE-EEEECSS--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC------CEEEEee-EEEEecC--CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 9999999999999999999821 1121111 1222233 3457799999999997777777889999999999
Q ss_pred CChhcHHHHHHhhHHHHhhhCCCCcE-EEEee-CCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC--CceeEE--ec
Q psy10443 88 VSPSSFDNVTSKWYPELKHHCPDAPI-ILVGT-KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR--AVKYME--CS 161 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~~~~p~-vvv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~S 161 (195)
++.. .....+ ++..+... ++|. ++++| |+|+ ....... ..++++++...++ .+++++ +|
T Consensus 93 ~~g~-~~qt~e-~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~----------~~~~i~~~l~~~~~~~~~ii~~~~S 157 (370)
T 2elf_A 93 PQGL-DAHTGE-CIIALDLL--GFKHGIIALTRSDST-HMHAIDE----------LKAKLKVITSGTVLQDWECISLNTN 157 (370)
T ss_dssp TTCC-CHHHHH-HHHHHHHT--TCCEEEEEECCGGGS-CHHHHHH----------HHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred CCCC-cHHHHH-HHHHHHHc--CCCeEEEEEEeccCC-CHHHHHH----------HHHHHHHHHHhcCCCceEEEecccc
Confidence 5433 222332 44444443 6777 88999 9999 4321110 1134444444432 368999 99
Q ss_pred cCC---cccHHHHHHHHHHHHcCC
Q psy10443 162 ALT---QRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~---~~~v~~~~~~l~~~~~~~ 182 (195)
|++ +.|++++++.|.+.+...
T Consensus 158 A~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 158 KSAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp TTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred cccCcCCCCHHHHHHHHHhhcccc
Confidence 999 999999999999887543
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=132.36 Aligned_cols=161 Identities=13% Similarity=0.060 Sum_probs=99.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccc----------cccCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDY----------DRLRP 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~----------~~~~~ 72 (195)
.+..+|+++|++|||||||++++++..+.....++.+.... ..+.+++ .+.+||+||.... .....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 46789999999999999999999987643333344333221 2222333 3559999997431 11112
Q ss_pred CCC---CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH
Q psy10443 73 LSY---PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA 149 (195)
Q Consensus 73 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (195)
.++ ..++++++++|++++.+..... ....+.. .++|+++++||+|+...... ......+..++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~~--~~~~~~~v~nK~D~~s~~~~----------~~~~~~~~~~~ 166 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQ--MIEWAVD--SNIAVLVLLTKADKLASGAR----------KAQLNMVREAV 166 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH--TTCCEEEEEECGGGSCHHHH----------HHHHHHHHHHH
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHH--HHHHHHH--cCCCeEEEEecccCCCchhH----------HHHHHHHHHHH
Confidence 222 5789999999999876553221 2222222 26899999999998764321 01123444555
Q ss_pred HHcC-CceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 150 NKIR-AVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 150 ~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
...+ .+.++++||+++.|++++++.|.+.+.+
T Consensus 167 ~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 167 LAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 5443 3567899999999999999999987754
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.5e-22 Score=144.91 Aligned_cols=159 Identities=16% Similarity=0.141 Sum_probs=98.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCC------cccc-----------------------eeeccc-----------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGE------YVPT-----------------------VFDNYS----------- 44 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~------~~~t-----------------------~~~~~~----------- 44 (195)
...+|+|+|.+|||||||+++|++..+... ..|+ +.....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999876311 1122 100000
Q ss_pred ----------eeEEeC-CEEEEEEEEeCCCCcc-------------ccccCCCCCCCccEEE-EEEeCCChhcHHHHHHh
Q psy10443 45 ----------APFTVD-GIPVSLGLWDTAGQED-------------YDRLRPLSYPQTDVFL-ICYSVVSPSSFDNVTSK 99 (195)
Q Consensus 45 ----------~~~~~~-~~~~~l~~~D~~G~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~ 99 (195)
..+.+. .....+.+|||||... +..+...+++.++.++ +|+|+++..+..+.. .
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~-~ 183 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-K 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-H
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH-H
Confidence 000000 0024677999999642 3344556777888776 799998754433332 2
Q ss_pred hHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHH--HHHcCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 100 WYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKL--ANKIRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 100 ~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
+...+.. .+.|+++|+||+|+..... ...+..... ....+..+++++||++|.|++++++++.+
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLMDEGT------------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTTC------------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHHhCC--CCCeEEEEEEccccCCCCc------------hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 4444443 3789999999999976432 111111100 00112246889999999999999999877
Q ss_pred H
Q psy10443 178 A 178 (195)
Q Consensus 178 ~ 178 (195)
.
T Consensus 250 ~ 250 (299)
T 2aka_B 250 E 250 (299)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-21 Score=154.60 Aligned_cols=164 Identities=16% Similarity=0.126 Sum_probs=89.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCC------------------------------cccceeeccceeEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGE------------------------------YVPTVFDNYSAPFTVDG 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~ 51 (195)
+..++|+++|.+++|||||+++|+... +... ...++.+.....+..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-- 252 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-- 252 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe--
Confidence 456899999999999999999996421 1000 001111111111222
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChh---cH--H-HHHHhhHHHHhhhCCCCc-EEEEeeCCCccc
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPS---SF--D-NVTSKWYPELKHHCPDAP-IILVGTKIDLRE 124 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~-~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~ 124 (195)
....+.||||||++.|......++..+|++|+|+|++++. ++ . .... .+..+... ++| +++++||+|+..
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e-~l~~~~~l--gip~iIvviNKiDl~~ 329 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTRE-HAYLLRAL--GISEIVVSVNKLDLMS 329 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHH-HHHHHHHS--SCCCEEEEEECGGGGT
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHH-HHHHHHHc--CCCeEEEEEecccccc
Confidence 2356779999999999999999999999999999998642 11 1 1111 22222222 565 999999999975
Q ss_pred chHhhhhhhhcCCCCccHHHHHHHH-HHcCC----ceeEEeccCCcccHH--------------HHHHHHHHHHc
Q psy10443 125 DRETLNLLSEQNLSPVKREQGQKLA-NKIRA----VKYMECSALTQRGLR--------------QVFDEAVRAVL 180 (195)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~v~--------------~~~~~l~~~~~ 180 (195)
...... ....++...+. ...+. ++++++||++|.|+. .+++.|.+.+.
T Consensus 330 ~~~~~~--------~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 330 WSEDRF--------QEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp TCHHHH--------HHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred ccHHHH--------HHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 221000 01122334444 33332 479999999999998 67777766544
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=142.31 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=78.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCC--------Ccccce----------eecc---ceeEEeCCEEEEEEEEeC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPG--------EYVPTV----------FDNY---SAPFTVDGIPVSLGLWDT 61 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~--------~~~~t~----------~~~~---~~~~~~~~~~~~l~~~D~ 61 (195)
+..+|+++|.+|+|||||+++|+... +.. ....+. +... ...+..++ +.+++|||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT 89 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT 89 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence 56899999999999999999998631 100 000011 0000 11223333 56779999
Q ss_pred CCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
||+..|......+++.+|++|+|+|+++....+.. .+...+.. .++|+++++||+|+....
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~--~~~~~~~~--~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR--KLMEVTRL--RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH--HHHHHHTT--TTCCEEEEEECTTSCCSC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHH--HHHHHHHH--cCCCEEEEEcCcCCcccc
Confidence 99999988888889999999999999986543332 23333333 378999999999997643
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.7e-20 Score=147.74 Aligned_cols=116 Identities=16% Similarity=0.059 Sum_probs=80.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccce----------------eecc-ceeEEeCCEEEEEEEEeCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV----------------FDNY-SAPFTVDGIPVSLGLWDTAGQED 66 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~----------------~~~~-~~~~~~~~~~~~l~~~D~~G~~~ 66 (195)
.+..+|+++|+.|+|||||+++|++.........+. ...+ .....+....+.+++||+||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 456799999999999999999998532211111100 0011 11222222346788999999999
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
|......+++.+|++++|+|+++....+... ++..+... ++|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~--~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTER--AWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHHH--HHHHHHHc--cCCEEEEecCCchh
Confidence 9888888899999999999998765544432 44444443 79999999999987
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.2e-20 Score=132.80 Aligned_cols=119 Identities=16% Similarity=0.225 Sum_probs=84.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCC-----
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYP----- 76 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~----- 76 (195)
+++++|+++|.+|+|||||+++|++..+ ...+.+++.......+..++. .+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHH
Confidence 5789999999999999999999998764 344445544444455566665 5669999999887655444433
Q ss_pred ----CccEEEEEEeCCChhcHHHHHHhhHHHHhhhC-CC--CcEEEEeeCCCcccc
Q psy10443 77 ----QTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PD--APIILVGTKIDLRED 125 (195)
Q Consensus 77 ----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~--~p~vvv~nK~D~~~~ 125 (195)
++|++++|+++++.. +......|+..+.... .+ .|+++|+||+|+...
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 789999999987654 3333224666665532 22 499999999998643
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-20 Score=136.45 Aligned_cols=135 Identities=15% Similarity=0.119 Sum_probs=107.3
Q ss_pred HHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChh-cHHHHHH
Q psy10443 21 CMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPS-SFDNVTS 98 (195)
Q Consensus 21 sli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~ 98 (195)
+|+.+++.+.|. ..+.||.++.+......++ .+.+||+ +++++.+++.+++++|++|+|||+++++ ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~- 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID- 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH-
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH-
Confidence 688889988888 8889998876654332333 5779999 9999999999999999999999999998 666655
Q ss_pred hhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC-ceeEEeccCCcccHHHHHHHHHH
Q psy10443 99 KWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA-VKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 99 ~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
.|+..+.. .++|+++|+||+|+..... + ++...++..++. .+++++||++|.|++++|..+..
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~------------v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDD------------L--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHH------------H--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchh------------H--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 58877665 4899999999999976421 1 345566666553 57999999999999999988754
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-19 Score=142.37 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=82.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC--CCC------C------------CcccceeeccceeEEeCCEEEEEEEEeCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD--SFP------G------------EYVPTVFDNYSAPFTVDGIPVSLGLWDTAG 63 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~--~~~------~------------~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G 63 (195)
.+..+|+++|.+|+|||||+++|+.. .+. . ....|... ....+..++ +.+++|||||
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~-~~~~~~~~~--~~i~liDTPG 86 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA-AVTTCFWKD--HRINIIDTPG 86 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------C-CEEEEEETT--EEEEEECCCS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhccccccc-ceEEEEECC--eEEEEEECcC
Confidence 45689999999999999999999841 110 0 01111111 112233333 5677999999
Q ss_pred CccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
+..|...+..+++.+|++|+|+|+++....+... .|... ... ++|+++++||+|+....
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~-~~~~~-~~~--~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWRQA-EKY--KVPRIAFANKMDKTGAD 145 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHH-HHT--TCCEEEEEECTTSTTCC
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHH-HHHHH-HHc--CCCEEEEEECCCcccCC
Confidence 9999888888999999999999999987776654 35443 332 79999999999997643
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-20 Score=138.69 Aligned_cols=164 Identities=16% Similarity=0.159 Sum_probs=87.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC-CCCCCc--------ccceeec-cceeEEeCCEEEEEEEEeCCCC-------ccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD-SFPGEY--------VPTVFDN-YSAPFTVDGIPVSLGLWDTAGQ-------EDY 67 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~-~~~~~~--------~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~-------~~~ 67 (195)
-.++|+++|++|+|||||+++|++. .++..+ .++.... .......++....+.+||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4689999999999999999998875 443332 1121111 1112223455678899999997 444
Q ss_pred cccCC-------CCCC-------------CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchH
Q psy10443 68 DRLRP-------LSYP-------------QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127 (195)
Q Consensus 68 ~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 127 (195)
..+.. .+++ .+++++++.+.+.. ++..... ..++....++|+++|+||+|+....+
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH---HHHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH---HHHHHHHhcCCEEEEEEeCCCCCHHH
Confidence 43322 2211 23445555554321 2333221 22333334689999999999976432
Q ss_pred hhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
. ....+++.+++..++ ++++++||+++ |++++|..+.+.+.+..+
T Consensus 173 ~----------~~~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 173 R----------ERLKKRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp H----------HHHHHHHHHHHHHTT-CCCCCCC----------CHHHHHHHHTTCS
T ss_pred H----------HHHHHHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 1 123456788888887 78999999999 999999999998865443
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-19 Score=134.82 Aligned_cols=148 Identities=17% Similarity=0.236 Sum_probs=103.4
Q ss_pred CCCcccceeeccce----------eEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCC----------hh
Q psy10443 32 PGEYVPTVFDNYSA----------PFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVS----------PS 91 (195)
Q Consensus 32 ~~~~~~t~~~~~~~----------~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~ 91 (195)
..+|.||..+.+.. .+.+++ +.+++||++|++.++..|..++++++++|||||+++ ..
T Consensus 187 ~~~Y~PT~~Dil~~r~~TiGi~~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~n 264 (402)
T 1azs_C 187 QDDYVPSDQDLLRCRVLTSGIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTN 264 (402)
T ss_dssp CTTCCCCHHHHHHCCCCCCSEEEEEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSB
T ss_pred ccccCCccccccccccceeeeEEEEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccc
Confidence 45677776443321 233443 678899999999999999999999999999999999 88
Q ss_pred cHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhh--hh----hcC------------CCCccHHHHHHHH--
Q psy10443 92 SFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNL--LS----EQN------------LSPVKREQGQKLA-- 149 (195)
Q Consensus 92 s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~--~~----~~~------------~~~~~~~~~~~~~-- 149 (195)
++.++.. |+..+... .+++|++|++||+|+......... .. +.. -.....+++..|+
T Consensus 265 s~~e~~~-~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~ 343 (402)
T 1azs_C 265 RLQEALN-LFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRD 343 (402)
T ss_dssp HHHHHHH-HHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHH
T ss_pred hHHHHHH-HHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHH
Confidence 9998875 66666543 478999999999998654321000 00 000 0000134555553
Q ss_pred ---HHc-------CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 150 ---NKI-------RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 150 ---~~~-------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
... ..+.+++|||+++.|++++|.++.+.+.+.
T Consensus 344 kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 344 EFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp HHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHHH
Confidence 221 236678999999999999999999887644
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-19 Score=144.38 Aligned_cols=172 Identities=15% Similarity=0.173 Sum_probs=105.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceee--------ccceeEEe--------------------CC----
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFD--------NYSAPFTV--------------------DG---- 51 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~--------~~~~~~~~--------------------~~---- 51 (195)
..++|+|+|.+|+|||||+|+|++..+ +....|++.. ....+..+ ++
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 578999999999999999999998754 2222333310 00001100 00
Q ss_pred ----------------------EE--EEEEEEeCCCCcc---ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHH
Q psy10443 52 ----------------------IP--VSLGLWDTAGQED---YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL 104 (195)
Q Consensus 52 ----------------------~~--~~l~~~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 104 (195)
.. ..+.+|||||... .......+++.+|++|+|+|++++.+..+.. .|...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~-~l~~~l 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR-YLENYI 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH-HHHHHT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH-HHHHHH
Confidence 00 2477999999554 2344556788999999999999887776654 355444
Q ss_pred hhhCCCCcEEEEeeCCCcccchHhhh-hhhhcCCCCccHHHHHH-----HHHHc-------CCceeEEeccC--------
Q psy10443 105 KHHCPDAPIILVGTKIDLREDRETLN-LLSEQNLSPVKREQGQK-----LANKI-------RAVKYMECSAL-------- 163 (195)
Q Consensus 105 ~~~~~~~p~vvv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~-------~~~~~~~~Sa~-------- 163 (195)
... +.|+++|+||+|+........ ..... . ...+.... +.... ...+++++||+
T Consensus 227 ~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l--~-~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 227 KGR--GLTVFFLVNAWDQVRESLIDPDDVEEL--Q-ASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp TTS--CCCEEEEEECGGGGGGGCSSTTCHHHH--H-HHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred Hhh--CCCEEEEEECcccccccccChhhHHHH--H-HHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 433 678999999999875420000 00000 0 00001111 11111 12468999999
Q ss_pred ------CcccHHHHHHHHHHHHcCC
Q psy10443 164 ------TQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 164 ------~~~~v~~~~~~l~~~~~~~ 182 (195)
++.|+++++..|.+.+...
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred CchhhhhccCHHHHHHHHHHHHHHh
Confidence 9999999999998877543
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=139.66 Aligned_cols=118 Identities=17% Similarity=0.081 Sum_probs=82.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC--CCCCC-----------c-------ccceeeccceeEEeC-----CEEEEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD--SFPGE-----------Y-------VPTVFDNYSAPFTVD-----GIPVSLGL 58 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~~-----------~-------~~t~~~~~~~~~~~~-----~~~~~l~~ 58 (195)
.+..+|+|+|..|+|||||+++|+.. .+... + ..|.... ...+.++ +..+.+++
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSA-ATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeec-eEEEEECCccccCCceeEEE
Confidence 45689999999999999999999752 11110 0 0011000 1122222 23478889
Q ss_pred EeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 59 WDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 59 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
|||||+.+|...+..+++.+|++|+|+|+++....+... .|.. ... .++|+++++||+|+...+
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~-~~~--~~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQ-ANK--YKVPRIAFVNKMDRMGAN 150 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHH-HHH--cCCCEEEEEeCCCccccc
Confidence 999999999888888999999999999999876655443 2433 322 279999999999987543
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.3e-19 Score=127.18 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=81.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCC--------
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPL-------- 73 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~-------- 73 (195)
.+.++|+++|.+|+|||||+++|++..+. ..+.+++..........++ +.+.+|||||+..+......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 35799999999999999999999987652 3333333332233333444 45679999998776533221
Q ss_pred -CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhC-CC--CcEEEEeeCCCcccch
Q psy10443 74 -SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PD--APIILVGTKIDLREDR 126 (195)
Q Consensus 74 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~--~p~vvv~nK~D~~~~~ 126 (195)
..+.+|++++|+|++.. ++......|+..+.... .+ .|+++|+||+|+....
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 24579999999998653 33333334666665442 22 6999999999987543
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-18 Score=139.21 Aligned_cols=116 Identities=15% Similarity=0.115 Sum_probs=82.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc--CCCCC-----------Cc------ccceeeccceeEEeCCEEEEEEEEeCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT--DSFPG-----------EY------VPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~--~~~~~-----------~~------~~t~~~~~~~~~~~~~~~~~l~~~D~~G~ 64 (195)
.+..+|+++|.+|+|||||+++|+. +.+.. .+ ..++.......+.+++ +.+++|||||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence 4568999999999999999999985 22210 00 0011111112233444 56779999999
Q ss_pred ccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
..|...+..+++.+|++|+|+|+++..+.+... .|.. +... ++|+++++||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~-~~~~--~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQ-ATTY--GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHH-HHHT--TCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHH-HHHc--CCCEEEEEECCCcccc
Confidence 999888888899999999999999887766654 2543 3333 7999999999999764
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.6e-19 Score=133.39 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=82.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCC-c-------ccceee-ccceeEEeCCEEEEEEEEeCCCCccccc------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGE-Y-------VPTVFD-NYSAPFTVDGIPVSLGLWDTAGQEDYDR------ 69 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~-~-------~~t~~~-~~~~~~~~~~~~~~l~~~D~~G~~~~~~------ 69 (195)
-.++|+|+|++|+|||||++.|++..++.. + .++... .........+....+.+||++|...+..
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 357899999999999999999998765211 1 112111 1111122234456788999999765311
Q ss_pred -------------------cCCCCCCCccEEEEEEeCCCh-hcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhh
Q psy10443 70 -------------------LRPLSYPQTDVFLICYSVVSP-SSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETL 129 (195)
Q Consensus 70 -------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~ 129 (195)
+...++.++++.+++|..+.. .++......|+..+. .++|+++|+||+|+.......
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~ 186 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQ 186 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHH
Confidence 224456666655555554432 234333323666664 379999999999997654311
Q ss_pred hhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 130 NLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
...+++..++..++ ++++++|++++.++.++|..+.+.++
T Consensus 187 ----------~~k~~i~~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 187 ----------QFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp ----------HHHHHHHHHHHHHT-CCCCCCC-----------------CC
T ss_pred ----------HHHHHHHHHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 11256677777777 78999999999999999888887654
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-18 Score=129.80 Aligned_cols=159 Identities=19% Similarity=0.164 Sum_probs=103.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccc----cccCCCC---CCCcc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY----DRLRPLS---YPQTD 79 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~----~~~~~~~---~~~~d 79 (195)
.|+++|.+|+|||||++.+++... ...+..++.......+..++ ...+.+||+||.... ..+...+ +..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 589999999999999999998642 12233333222223334443 245669999997432 1222222 34689
Q ss_pred EEEEEEeCCChhcHHHHHHhhHHHHhhhC---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 80 VFLICYSVVSPSSFDNVTSKWYPELKHHC---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
.++.++|++ ...+.++. .|...+.... .+.|.++++||+|+... . ..++........+ .+
T Consensus 238 ~lL~vvDls-~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-------------~~~~l~~~l~~~g-~~ 300 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-------------AVKALADALAREG-LA 300 (416)
T ss_dssp EEEEEEETT-SCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-------------HHHHHHHHHHTTT-SC
T ss_pred hhhEEeCCc-cCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-------------HHHHHHHHHHhcC-Ce
Confidence 999999998 44555544 2444443332 25799999999998654 1 1123333444444 68
Q ss_pred eEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++.+||++++|+++++.+|.+.+.+...
T Consensus 301 vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 301 VLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred EEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 9999999999999999999998876543
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-19 Score=133.30 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=66.2
Q ss_pred EEEEEEeCCCCcc-------------ccccCCCCCCCccEEEEEEeCCChhcH-HHHHHhhHHHHhhhCCCCcEEEEeeC
Q psy10443 54 VSLGLWDTAGQED-------------YDRLRPLSYPQTDVFLICYSVVSPSSF-DNVTSKWYPELKHHCPDAPIILVGTK 119 (195)
Q Consensus 54 ~~l~~~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~vvv~nK 119 (195)
..+.+|||||... +......+++.+|++++|+|+++.... .... .+...+.. .+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~-~i~~~~~~--~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDAL-QLAKEVDP--EGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHH-HHHHHHCS--SCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHH-HHHHHhCC--CCCcEEEEEcC
Confidence 3577999999753 334445577899999999997543211 1111 13333433 37899999999
Q ss_pred CCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE---eccCC---cccHHHHHHHHHHHHcC
Q psy10443 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME---CSALT---QRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 120 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~Sa~~---~~~v~~~~~~l~~~~~~ 181 (195)
+|+..... ...+........++ .++++ +|+.+ +.|+.+++..+.+.+..
T Consensus 208 ~Dl~~~~~------------~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGT------------DAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSC------------CCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcch------------HHHHHHhCCCccCC-CCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 99976531 11111110000111 23444 45555 68899999998887754
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-19 Score=135.61 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=67.7
Q ss_pred EEEEEeCCCCccc-------------cccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCC
Q psy10443 55 SLGLWDTAGQEDY-------------DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKI 120 (195)
Q Consensus 55 ~l~~~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~ 120 (195)
.+.+||+||...+ ..+...+++++|++|+|+|.++.+.... .|+..+.... .+.|+++|+||+
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~---~~~~l~~~~~~~~~~~i~V~nK~ 213 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPSGDRTFGVLTKI 213 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC---HHHHHHHHSCTTCTTEEEEEECG
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH---HHHHHHHHhcccCCCEEEEEeCC
Confidence 4679999998776 3445567889999999998765443221 2344444332 368999999999
Q ss_pred CcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHH
Q psy10443 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174 (195)
Q Consensus 121 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 174 (195)
|+..... ...+....+...++ .+++.+|++++.++++.+..
T Consensus 214 Dl~~~~~------------~~~~~~~~~~~~~~-~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 214 DLMDKGT------------DAVEILEGRSFKLK-YPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp GGCCTTC------------CSHHHHTTSSSCCS-SCCEEECCCCHHHHHTTCCH
T ss_pred ccCCCcc------------cHHHHHcCcccccc-CCeEEEEECChHHhccCCCH
Confidence 9986531 22222222233334 67888898888887765444
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-18 Score=130.73 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=48.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeE---------------------EeCC-EEEEEEEEeCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPF---------------------TVDG-IPVSLGLWDTAG 63 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~---------------------~~~~-~~~~l~~~D~~G 63 (195)
++|+++|.+|||||||+|+|++... ..+++.++........ .+++ ..+.+.|||+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998753 2334334322222111 1233 246789999999
Q ss_pred Ccc----ccccCC---CCCCCccEEEEEEeCCCh
Q psy10443 64 QED----YDRLRP---LSYPQTDVFLICYSVVSP 90 (195)
Q Consensus 64 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 90 (195)
... ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222222 457899999999999875
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=116.95 Aligned_cols=156 Identities=15% Similarity=0.051 Sum_probs=94.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc------------c-eeEEeC------------------CEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY------------S-APFTVD------------------GIP 53 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~------------~-~~~~~~------------------~~~ 53 (195)
+..+|+++|.+|||||||+++|...........+....+ . ....++ ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457899999999999999999986421111111100000 0 001111 122
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
+.+.+||++|+..... .+....+.+++|+|+++.... .. .+.... +.|.++++||+|+.....
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~-~~~~~~-----~~~~iiv~NK~Dl~~~~~------ 171 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VE-KHPEIF-----RVADLIVINKVALAEAVG------ 171 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HH-HCHHHH-----HTCSEEEEECGGGHHHHT------
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hh-hhhhhh-----hcCCEEEEecccCCcchh------
Confidence 4566999998521111 111356889999999875432 11 122221 478899999999865311
Q ss_pred hcCCCCccHHHHHHHHHHcC-CceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 134 EQNLSPVKREQGQKLANKIR-AVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
...++...+...++ ..+++++||++|.|+++++++|.+.+....
T Consensus 172 ------~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 172 ------ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp ------CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred ------hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 23344555555443 368999999999999999999999886554
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-19 Score=134.44 Aligned_cols=158 Identities=18% Similarity=0.166 Sum_probs=90.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCc------cccee--------------------eccc--------------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEY------VPTVF--------------------DNYS-------------- 44 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~------~~t~~--------------------~~~~-------------- 44 (195)
...+|+|+|.+|||||||+++|++..+.... .|+.. ..+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3469999999999999999999997763211 12200 0000
Q ss_pred ----------eeEEeC-CEEEEEEEEeCCCCcc-------------ccccCCCCCCCcc-EEEEEEeCCChhcHHHHHHh
Q psy10443 45 ----------APFTVD-GIPVSLGLWDTAGQED-------------YDRLRPLSYPQTD-VFLICYSVVSPSSFDNVTSK 99 (195)
Q Consensus 45 ----------~~~~~~-~~~~~l~~~D~~G~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~ 99 (195)
..+.+. .....+.||||||... +..+...|+.+++ ++++|.|++....-.+.. .
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~-~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-K 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH-H
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH-H
Confidence 000110 0124577999999532 2334445565555 555566665422211111 1
Q ss_pred hHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH--HHHHHcCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 100 WYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ--KLANKIRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 100 ~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
+...+.. .+.|+++|+||+|+...... ..+... .+....+..+++.+||+++.|++++++.+.+
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~~------------~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDEGTD------------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCTTCC------------CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCc--CCCceEEEeccccccCcchh------------HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3333332 37899999999999764320 000000 0001122246788999999999999999876
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-16 Score=124.38 Aligned_cols=116 Identities=13% Similarity=0.133 Sum_probs=81.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--C---------------CCCcccc------eeeccceeEEeCCEEEEEEEEeC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--F---------------PGEYVPT------VFDNYSAPFTVDGIPVSLGLWDT 61 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~---------------~~~~~~t------~~~~~~~~~~~~~~~~~l~~~D~ 61 (195)
+.-||+|+|..++|||||..+|+... + ...+.+. +.......+.+++ +.++++||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 45699999999999999999986310 0 0011111 1111112344555 56779999
Q ss_pred CCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 62 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
|||..|.......++-+|++|+|+|+.+.---+... .|...... ++|.++++||+|....+
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~-v~~~a~~~---~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK-LMDVCRMR---ATPVMTFVNKMDREALH 168 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH-HHHHHHHT---TCCEEEEEECTTSCCCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHH-HHHHHHHh---CCceEEEEecccchhcc
Confidence 999999998899999999999999999876555544 36444443 89999999999986544
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-18 Score=122.23 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=91.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-------------eeEEeC-CEE-----------------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-------------APFTVD-GIP----------------- 53 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-------------~~~~~~-~~~----------------- 53 (195)
+..+|+++|.+|||||||+++|+...+...+.++....+. ....++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 5689999999999999999999986554444444433322 111111 110
Q ss_pred --EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhh
Q psy10443 54 --VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNL 131 (195)
Q Consensus 54 --~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~ 131 (195)
..+.+.|++|.-... ..+-...+.++.++|+.+...... .....+ +.|.++++||+|+....
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~---~~~~~~-----~~~~iiv~NK~Dl~~~~----- 180 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE---KHPGIM-----KTADLIVINKIDLADAV----- 180 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT---TCHHHH-----TTCSEEEEECGGGHHHH-----
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh---hhhhHh-----hcCCEEEEeccccCchh-----
Confidence 124455665531110 011123345566777533221110 011111 46889999999986532
Q ss_pred hhhcCCCCccHHHHHHHHHHc-CCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 132 LSEQNLSPVKREQGQKLANKI-RAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
....++...++..+ ...+++++||++|.|++++|++|.+.+..
T Consensus 181 -------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 181 -------GADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp -------TCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 13345566666654 24689999999999999999999887653
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-17 Score=124.92 Aligned_cols=107 Identities=17% Similarity=0.142 Sum_probs=68.5
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
+.+.||||||-... ....+..+|++++|+|.+..+..+.+. ....+.|+++|+||+|+........
T Consensus 172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~--------~~~~~~p~ivVlNK~Dl~~~~~~~~--- 237 (355)
T 3p32_A 172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK--------KGVLELADIVVVNKADGEHHKEARL--- 237 (355)
T ss_dssp CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC--------TTSGGGCSEEEEECCCGGGHHHHHH---
T ss_pred CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH--------HhHhhcCCEEEEECCCCcChhHHHH---
Confidence 45669999994321 223357899999999987655442221 1112458999999999865422110
Q ss_pred hcCCCCccHHHHHHHHHHc------CCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 134 EQNLSPVKREQGQKLANKI------RAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
...+........ +..+++.+||++|.|+++++++|.+.+..
T Consensus 238 -------~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 238 -------AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp -------HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 011122111111 13679999999999999999999887653
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-17 Score=133.22 Aligned_cols=117 Identities=17% Similarity=0.131 Sum_probs=84.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC--CCCC------Cc----------ccceeecc-ceeEE------------eCCE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD--SFPG------EY----------VPTVFDNY-SAPFT------------VDGI 52 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~------~~----------~~t~~~~~-~~~~~------------~~~~ 52 (195)
++..||+|+|+.|+|||||+++|+.. .... .+ ..|..... ...+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 45679999999999999999999863 1110 00 00111000 01111 2345
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCccc
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 124 (195)
.+.+++|||||+.+|...+..+++.+|++|+|+|+++..+.+... .|...... ++|+++++||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~~~---~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQALGE---RIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHHT---TCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHHc---CCCeEEEEECCCcch
Confidence 788999999999999999999999999999999999988877654 35544432 789999999999863
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-15 Score=112.15 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=57.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCE---------------EEEEEEEeCCCCcccc--
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGI---------------PVSLGLWDTAGQEDYD-- 68 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~~~D~~G~~~~~-- 68 (195)
++|+++|.+|||||||+++|++..+ ..+++.++.......+.+.+. ...+.+||+||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 6899999999999999999998763 233444443322333444442 2568899999987653
Q ss_pred --ccCCC---CCCCccEEEEEEeCCC
Q psy10443 69 --RLRPL---SYPQTDVFLICYSVVS 89 (195)
Q Consensus 69 --~~~~~---~~~~~d~~i~v~d~~~ 89 (195)
.+... +++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23333 3689999999999986
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.8e-17 Score=120.85 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=60.9
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
+.+.++||+|-... .......+|++++|+|++++...+... ..+ ...|.++++||+|+.......
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~----~~i----l~~~~ivVlNK~Dl~~~~~~~---- 231 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK----RGI----IEMADLVAVTKSDGDLIVPAR---- 231 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH----
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH----HHH----HhcCCEEEEeeecCCCchhHH----
Confidence 34569999994311 123456899999999998764332221 111 145789999999986532100
Q ss_pred hcCCCCccHHHHHHHHHH---------cCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 134 EQNLSPVKREQGQKLANK---------IRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.....+... .+..+++.+||++|.|+++++++|.+.+.
T Consensus 232 ---------~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 232 ---------RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp ---------HHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 011112111 11357899999999999999999988653
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-16 Score=126.40 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=77.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC---CCcccceeeccce------eEEeC-----------------------CE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP---GEYVPTVFDNYSA------PFTVD-----------------------GI 52 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~---~~~~~t~~~~~~~------~~~~~-----------------------~~ 52 (195)
...+|+|+|.+|+|||||+|+|++..+. ....+++...... ....+ +.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4689999999999999999999998753 2222332110000 00000 00
Q ss_pred E---------EEEEEEeCCCCcc-----------ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc
Q psy10443 53 P---------VSLGLWDTAGQED-----------YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP 112 (195)
Q Consensus 53 ~---------~~l~~~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 112 (195)
. ..+.||||||... +......++..+|++++|+|+++........ .|+..+... +.|
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~~--~~p 220 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFS-EAIGALRGH--EDK 220 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHH-HHHHHTTTC--GGG
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHH-HHHHHHHhc--CCC
Confidence 0 2477999999764 2233445667899999999998754333333 355555543 579
Q ss_pred EEEEeeCCCcccch
Q psy10443 113 IILVGTKIDLREDR 126 (195)
Q Consensus 113 ~vvv~nK~D~~~~~ 126 (195)
+++|+||+|+....
T Consensus 221 vilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 221 IRVVLNKADMVETQ 234 (550)
T ss_dssp EEEEEECGGGSCHH
T ss_pred EEEEEECCCccCHH
Confidence 99999999998654
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.8e-17 Score=129.43 Aligned_cols=177 Identities=14% Similarity=0.037 Sum_probs=111.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhc--CCCCCC----cccceee----------cc-ceeEEeCCEEEEEEEEeCCCCccccc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT--DSFPGE----YVPTVFD----------NY-SAPFTVDGIPVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~--~~~~~~----~~~t~~~----------~~-~~~~~~~~~~~~l~~~D~~G~~~~~~ 69 (195)
-||+|+|+.++|||||..+|+. +.+... ...+..+ .. +....+....+.++++|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 5899999999999999999864 211110 0001000 00 11122222335677999999999999
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhh--hhhh-cCCC--------
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLN--LLSE-QNLS-------- 138 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~--~~~~-~~~~-------- 138 (195)
.....++-+|++|+|+|+.+.-.-+... .|...... ++|.++++||+|....+.... .+.+ ....
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~-v~~~a~~~---~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~ 158 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRI-LFHALRKM---GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 158 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHH-HHHHHHHH---TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHH-HHHHHHHc---CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence 8889999999999999998765444433 35544444 789999999999865432111 0100 0000
Q ss_pred ----------------------------------CccHH----HHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 139 ----------------------------------PVKRE----QGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 139 ----------------------------------~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
..... ............|++..||+++.|++.+++.+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p 238 (638)
T 3j25_A 159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFY 238 (638)
T ss_dssp SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcccc
Confidence 00000 0011112223467888999999999999999999888
Q ss_pred CCCcccc
Q psy10443 181 RPEPVKR 187 (195)
Q Consensus 181 ~~~~~~~ 187 (195)
.+.....
T Consensus 239 ~p~~~~~ 245 (638)
T 3j25_A 239 SSTHRGP 245 (638)
T ss_dssp CSGGGSC
T ss_pred Ccccchh
Confidence 7765443
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.4e-16 Score=110.77 Aligned_cols=126 Identities=15% Similarity=0.058 Sum_probs=70.8
Q ss_pred EEEEEEeCCCCccccccCC------CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHh-hhCCCCcEEEEeeCCCcccch
Q psy10443 54 VSLGLWDTAGQEDYDRLRP------LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~vvv~nK~D~~~~~ 126 (195)
+.+.+|||||+..+..... ..+.. +++++++|++...+.......+..... ....+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4677999999876543221 13456 899999998654333332211111111 112368999999999987643
Q ss_pred Hhhhhhhhc-CCCCccHH-------------HHHHHHHHcCC-ceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 127 ETLNLLSEQ-NLSPVKRE-------------QGQKLANKIRA-VKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 127 ~~~~~~~~~-~~~~~~~~-------------~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
......... ........ ...++...++. .+++++||+++.|+++++++|.+.+.
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 211100000 00000000 00111234432 47899999999999999999988764
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=118.30 Aligned_cols=115 Identities=15% Similarity=0.048 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC--------CCCCC--cccceeec---------cceeEEeC-----CEEEEEEEEeCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD--------SFPGE--YVPTVFDN---------YSAPFTVD-----GIPVSLGLWDTA 62 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~--------~~~~~--~~~t~~~~---------~~~~~~~~-----~~~~~l~~~D~~ 62 (195)
-||+|+|+.++|||||..+|+.. ..... +..+.... ....+.+. ...+.++++|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 49999999999999999998642 11100 00010000 01122222 235789999999
Q ss_pred CCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
||..|.......++-+|++|+|+|+.+.-..+... .|.+..+. ++|.++++||+|....
T Consensus 94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~-v~~~a~~~---~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSET-VWRQANKY---GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHHH---TCCEEEEEECSSSTTC
T ss_pred CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHH-HHHHHHHc---CCCeEEEEccccccCc
Confidence 99999998889999999999999999865555443 36555555 7999999999998643
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8.9e-15 Score=109.96 Aligned_cols=83 Identities=16% Similarity=0.214 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCC-------------------EEEEEEEEeCCCCcc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDG-------------------IPVSLGLWDTAGQED 66 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~-------------------~~~~l~~~D~~G~~~ 66 (195)
++|+++|.+|||||||+++|++... ..+++.++.........+.+ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5899999999999999999998542 23333333221111122211 235688999999876
Q ss_pred ccc----cCC---CCCCCccEEEEEEeCCC
Q psy10443 67 YDR----LRP---LSYPQTDVFLICYSVVS 89 (195)
Q Consensus 67 ~~~----~~~---~~~~~~d~~i~v~d~~~ 89 (195)
+.+ +.. ..++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 532 211 23678999999999985
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-16 Score=116.15 Aligned_cols=106 Identities=15% Similarity=0.192 Sum_probs=64.4
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
+.+.+|||||....... ....+|++++|+|+++.+..+.+ .... .+.|.++|+||+|+........
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l----~~~~----~~~p~ivv~NK~Dl~~~~~~~~--- 214 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGI----KKGL----MEVADLIVINKDDGDNHTNVAI--- 214 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCC----CHHH----HHHCSEEEECCCCTTCHHHHHH---
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHH----HHhh----hcccCEEEEECCCCCChHHHHH---
Confidence 45669999996543322 35899999999999765432111 1111 1468899999999865421100
Q ss_pred hcCCCCccHHHHHHHHHHcC------CceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 134 EQNLSPVKREQGQKLANKIR------AVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
..++.......++ ..+++++||++|.|+++++++|.+.+.
T Consensus 215 -------~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 -------ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp -------HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 0011222112221 357899999999999999999988664
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-15 Score=121.34 Aligned_cols=157 Identities=18% Similarity=0.127 Sum_probs=94.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeecc-----------------------------------------
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNY----------------------------------------- 43 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~----------------------------------------- 43 (195)
..+|+|+|.+++|||||+|.|++..+ +....+++....
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 35999999999999999999999765 222111111000
Q ss_pred -----c---eeEEeC-CEEEEEEEEeCCCCccc-------------cccCCCCC-CCccEEEEEEeCCChhcHHHHHHhh
Q psy10443 44 -----S---APFTVD-GIPVSLGLWDTAGQEDY-------------DRLRPLSY-PQTDVFLICYSVVSPSSFDNVTSKW 100 (195)
Q Consensus 44 -----~---~~~~~~-~~~~~l~~~D~~G~~~~-------------~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~ 100 (195)
+ ....+. .....+.|+||||-... ..+...++ ..+|++++|+|+++.....+.. .+
T Consensus 131 ~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l-~l 209 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-KI 209 (772)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH-HH
T ss_pred CCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH-HH
Confidence 0 000000 00113669999994331 11222232 5789999999998754333332 24
Q ss_pred HHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHH---HHHHcCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 101 YPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQK---LANKIRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 101 ~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
+..+... +.|+++|+||+|+..... ... .... +....+..+++.+||++|.|++++++.+.+
T Consensus 210 l~~L~~~--g~pvIlVlNKiDlv~~~~------------~~~-~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 210 AKEVDPQ--GQRTIGVITKLDLMDEGT------------DAR-DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHCTT--CSSEEEEEECTTSSCTTC------------CSH-HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHhc--CCCEEEEEeCcccCCcch------------hhH-HHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 4444443 789999999999986532 111 1110 000123346788999999999999999887
Q ss_pred H
Q psy10443 178 A 178 (195)
Q Consensus 178 ~ 178 (195)
.
T Consensus 275 e 275 (772)
T 3zvr_A 275 E 275 (772)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-15 Score=104.11 Aligned_cols=111 Identities=10% Similarity=0.042 Sum_probs=70.4
Q ss_pred CCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhh---HHHHhhh--CCCCcEEEEeeCC-CcccchHhhhhhhh
Q psy10443 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKW---YPELKHH--CPDAPIILVGTKI-DLREDRETLNLLSE 134 (195)
Q Consensus 61 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~--~~~~p~vvv~nK~-D~~~~~~~~~~~~~ 134 (195)
.+||...+.+|..|+.++|++|||+|++|.+..+ ....+ ...+... ..++|++|++||. |+...-...+..+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 3489999999999999999999999999986543 33223 3334332 2689999999995 67554322222221
Q ss_pred cCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 135 QNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+.+.. . . ..+.+..|||.+|+|+.+.++||.+.+..++
T Consensus 188 L~L~~--------l--~-R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 188 LHLNL--------L--N-HPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp TTGGG--------G--C-SCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred cCCcC--------C--C-CCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 11110 0 1 3377899999999999999999988775543
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.9e-14 Score=104.30 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc-------CCCCCCCc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL-------RPLSYPQT 78 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~-------~~~~~~~~ 78 (195)
.+|+++|.||||||||+|+|++... ..+++.|+.+.....+.+.+..+ +++|+||-..-... ....++.+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i--~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI--QMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE--EEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE--EEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 5899999999999999999998643 35677777776677778888655 59999995332111 11235679
Q ss_pred cEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
|++++|+|+++|..-......-+..........|..+++||.|..
T Consensus 151 d~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 151 NLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp SEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred CccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 999999999987443322211122222223457888899999974
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.51 E-value=9e-14 Score=102.31 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=78.0
Q ss_pred CccccccCCCCCCCccEEEEEEeCCChh-cHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCcc-
Q psy10443 64 QEDYDRLRPLSYPQTDVFLICYSVVSPS-SFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVK- 141 (195)
Q Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~- 141 (195)
++++..+.+.+++++|++++|+|+++++ ++..+. .|+..+.. .++|+++|+||+|+..... +.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~-~~l~~~~~--~~~~~ilV~NK~DL~~~~~------------v~~ 130 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLD-NMLVVYEY--FKVEPVIVFNKIDLLNEEE------------KKE 130 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHH-HHHHHHHH--TTCEEEEEECCGGGCCHHH------------HHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHH-HHHHHHHh--CCCCEEEEEEcccCCCccc------------cHH
Confidence 7888888899999999999999999986 777655 58776665 4899999999999976421 11
Q ss_pred HHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 142 REQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
.++...+....+ .+++++||++|.|+++++..+..
T Consensus 131 ~~~~~~~~~~~g-~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 131 LERWISIYRDAG-YDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp HHHHHHHHHHTT-CEEEECCTTTCTTHHHHHHHTTT
T ss_pred HHHHHHHHHHCC-CeEEEEECCCCCCHHHHHhhccC
Confidence 234555666666 68999999999999999987643
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-13 Score=99.99 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=61.1
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
+.+.|+||+|..... ......+|.+++|+|++..+..+.+. ..+. ..|.++++||+|+.....
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~----~~i~----~~~~ivvlNK~Dl~~~~~------ 210 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIK----KGIF----ELADMIAVNKADDGDGER------ 210 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CC----TTHH----HHCSEEEEECCSTTCCHH------
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHH----HHHh----ccccEEEEEchhccCchh------
Confidence 345599999964321 12346889999999987543322111 1111 235577789999754321
Q ss_pred hcCCCCccHHHHHHHHHHc---C------CceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 134 EQNLSPVKREQGQKLANKI---R------AVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~---~------~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
......+.+.... . ..+++.+||+++.|++++++.|.+...
T Consensus 211 ------~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 211 ------RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ------HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1111222222211 1 257889999999999999999988653
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.5e-14 Score=101.81 Aligned_cols=112 Identities=10% Similarity=0.015 Sum_probs=75.4
Q ss_pred CCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHH--hhHHHHhhh--CCCCcEEEEeeC-CCcccchHhhhhhhhc
Q psy10443 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTS--KWYPELKHH--CPDAPIILVGTK-IDLREDRETLNLLSEQ 135 (195)
Q Consensus 61 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~--~~~~~~~~~--~~~~p~vvv~nK-~D~~~~~~~~~~~~~~ 135 (195)
.+||+..+.+|..|+.++|++|||+|++|.+.++...+ .+...+... ..++|++|++|| .|+...-...+..+.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L 273 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 273 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHc
Confidence 46899999999999999999999999999876542211 122344332 368999999996 5886553222222221
Q ss_pred CCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 136 NLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
.+.. . . ..+.+..|||.+|+|+.+.++||.+.+..++
T Consensus 274 ~L~~--------l--~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 274 HLNL--------L--N-HPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp TGGG--------G--C-SCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred CCcc--------C--C-CcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 1110 0 1 3377899999999999999999999886544
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-13 Score=102.74 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=49.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCE---------------EEEEEEEeCCCCcccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGI---------------PVSLGLWDTAGQEDYD 68 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~~~D~~G~~~~~ 68 (195)
..++|+++|.+|||||||+++|++..+. .+++.++.......+.+.+. ...+.+||+||...+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4679999999999999999999987542 22333333222333333332 2358899999987654
Q ss_pred c-------cCCCCCCCccEEEEEEeCCChhc
Q psy10443 69 R-------LRPLSYPQTDVFLICYSVVSPSS 92 (195)
Q Consensus 69 ~-------~~~~~~~~~d~~i~v~d~~~~~s 92 (195)
+ .+..+++++|++++|+|+++.++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 3 23345779999999999986544
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.3e-11 Score=89.82 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=74.0
Q ss_pred CCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccH
Q psy10443 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR 142 (195)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~ 142 (195)
.+++|..+...+.+.++++++|+|++++. ..|...+.+...+.|+++|+||+|+.... ...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~-------------~~~ 115 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS-------------VKH 115 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT-------------SCH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc-------------cCH
Confidence 45788888888899999999999999863 23666666666689999999999997542 222
Q ss_pred HHHH----HHHHHcCC--ceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 143 EQGQ----KLANKIRA--VKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 143 ~~~~----~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
++.. .+++..+. .+++.+||++|.|++++++.+.+..
T Consensus 116 ~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 116 DKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 2333 33555552 2789999999999999999997754
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-10 Score=86.83 Aligned_cols=98 Identities=21% Similarity=0.279 Sum_probs=73.4
Q ss_pred CCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccH
Q psy10443 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR 142 (195)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~ 142 (195)
.++.|.+....+++.++++++|+|++++.+ .|...+.....+.|+++|+||+|+.... ...
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~-------------~~~ 117 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRS-------------VKY 117 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTT-------------CCH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCc-------------cCH
Confidence 478888888888889999999999999874 3555555555689999999999997642 222
Q ss_pred HHHHH----HHHHcCC--ceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 143 EQGQK----LANKIRA--VKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 143 ~~~~~----~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
+...+ +.+..+. .+++.+||++|.|++++++.+.+..
T Consensus 118 ~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 118 PKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 23333 3455553 3689999999999999999998765
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-09 Score=82.88 Aligned_cols=116 Identities=17% Similarity=0.242 Sum_probs=61.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcc----cc-eeeccceeEEeCCEEEEEEEEeCCCCcccc-------------
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYV----PT-VFDNYSAPFTVDGIPVSLGLWDTAGQEDYD------------- 68 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~----~t-~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~------------- 68 (195)
++++|+|++|+|||||++.+++..+.+... +. ............+....+.++|++|-....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 569999999999999999999865432111 11 111111111112223367799998743210
Q ss_pred ------------ccCC--CCCCCc--c-EEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchH
Q psy10443 69 ------------RLRP--LSYPQT--D-VFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127 (195)
Q Consensus 69 ------------~~~~--~~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 127 (195)
.... .....+ | +++|+.|...+-+..++ .++..+. .++|+++|.||+|...+.+
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~~E 193 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISKSE 193 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccchHH
Confidence 0000 022233 3 35567776544333332 2444443 4799999999999887654
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.02 E-value=6.4e-10 Score=84.19 Aligned_cols=85 Identities=21% Similarity=0.239 Sum_probs=58.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCE---------------EEEEEEEeCCCCccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGI---------------PVSLGLWDTAGQEDY 67 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~~~D~~G~~~~ 67 (195)
+..++.++|.+|+|||||++.|++... ..+++.++.......+.+.+. ...+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 457999999999999999999999653 344444454444455555541 135779999995432
Q ss_pred cc-------cCCCCCCCccEEEEEEeCCC
Q psy10443 68 DR-------LRPLSYPQTDVFLICYSVVS 89 (195)
Q Consensus 68 ~~-------~~~~~~~~~d~~i~v~d~~~ 89 (195)
.+ .....++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22 12233578999999999874
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.4e-11 Score=90.94 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=65.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC------CC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccC----CC-
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD------SF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLR----PL- 73 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~------~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~----~~- 73 (195)
..+|+++|.+|+|||||+|.|++. .. ...+..|+.... ...++. . +.++||||-.....+. ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~-~--~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMI--EIPLES-G--ATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEE--EEECST-T--CEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeE--EEEeCC-C--eEEEeCCCcCcHHHHHHHHhHHH
Confidence 457999999999999999999975 11 112222222211 122222 1 5699999953322111 11
Q ss_pred ---C--CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 74 ---S--YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 74 ---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
+ -...+.++++++....-....+. .+..+.. .+.|+++++||.|..+..
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~--~l~~l~~--~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLA--RLDYIKG--GRRSFVCYMANELTVHRT 290 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTE--EEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEE--EEEEccC--CCceEEEEecCCcccccc
Confidence 1 15679999999974321111111 1222222 368999999999998754
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-09 Score=77.03 Aligned_cols=117 Identities=19% Similarity=0.227 Sum_probs=64.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCc--------ccceeeccceeEEe--CCEEEEEEEEeCCCCcccc-------
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEY--------VPTVFDNYSAPFTV--DGIPVSLGLWDTAGQEDYD------- 68 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~--------~~t~~~~~~~~~~~--~~~~~~l~~~D~~G~~~~~------- 68 (195)
.++++++|++|+|||||++.+++...+... .+.........+.. .+....+.++|++|-....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 479999999999999999999984322110 00000000111111 2222367799998732110
Q ss_pred ---------------------ccCCCCCCCccEEEEEEeCC-ChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 69 ---------------------RLRPLSYPQTDVFLICYSVV-SPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 69 ---------------------~~~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
......+..+++.++++|.. .+-+-.+. ..+..+.. .+++++|++|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~--~~l~~L~~---~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL--EFMKHLSK---VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH--HHHHHHHT---TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH--HHHHHHHh---cCcEEEEEeccccCCHH
Confidence 00112233468889999854 33232222 24445544 38999999999988765
Q ss_pred H
Q psy10443 127 E 127 (195)
Q Consensus 127 ~ 127 (195)
+
T Consensus 157 e 157 (270)
T 3sop_A 157 E 157 (270)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-10 Score=89.80 Aligned_cols=152 Identities=15% Similarity=0.127 Sum_probs=82.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhh------cCCC----CCCcccceee-------cccee-EE-----------------
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYT------TDSF----PGEYVPTVFD-------NYSAP-FT----------------- 48 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~------~~~~----~~~~~~t~~~-------~~~~~-~~----------------- 48 (195)
.++..|+++|.+||||||+++.|. +... .+.+.+...+ ..... +.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 356789999999999999999998 3211 0111111100 00000 00
Q ss_pred eCCEEEEEEEEeCCCCccccc-cCCC---C--CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcE-EEEeeCCC
Q psy10443 49 VDGIPVSLGLWDTAGQEDYDR-LRPL---S--YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPI-ILVGTKID 121 (195)
Q Consensus 49 ~~~~~~~l~~~D~~G~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-vvv~nK~D 121 (195)
.....+.+.|+||||...... +... . ...+|.+++|+|++....... ....+.. .+|+ .+|+||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~---~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD---KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH---HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh---hcCceEEEEeCCc
Confidence 000224566999999753221 1100 0 126899999999987543222 2222332 2574 88899999
Q ss_pred cccchHhhhhhhhcCCCCccHHHHHHHHHHcC-----------------CceeEEeccCCccc-HHHHHHHHHHH
Q psy10443 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIR-----------------AVKYMECSALTQRG-LRQVFDEAVRA 178 (195)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~~-v~~~~~~l~~~ 178 (195)
...... ........++ ..+.+.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g----------------~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGG----------------GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCT----------------HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchH----------------HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 864321 0111111111 11234479999999 99999998776
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.7e-11 Score=88.91 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=63.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCC--------CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCC-----
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFP--------GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRP----- 72 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~----- 72 (195)
..+|+++|.+|+|||||+|.|++.... .....|+... ....+.+. +.++||||-.....+..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~ 234 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDL--IDIPLDEE---SSLYDTPGIINHHQMAHYVGKQ 234 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CE--EEEESSSS---CEEEECCCBCCTTSGGGGSCHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecce--EEEEecCC---eEEEeCCCcCcHHHHHHHhhHH
Confidence 458999999999999999999885211 1112222111 11222221 56999999543221111
Q ss_pred -----CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 73 -----LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 73 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
......+.++++++.........+. .+..+.. .+.|+++++||.|..+..
T Consensus 235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~--~~d~l~~--~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLA--RFDYVSG--GRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHHHHSCSSCCCCEEEEECTTEEEEETTTE--EEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred HHHHhccccccCceEEEEcCCCEEEEcceE--EEEEecC--CCceEEEEecCccccccc
Confidence 0134678889998874221111111 1222222 368999999999998764
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-09 Score=78.93 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=66.5
Q ss_pred EEeCCCCc-cccccCCCCCCCccEEEEEEeCCChhcHHH-HHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhc
Q psy10443 58 LWDTAGQE-DYDRLRPLSYPQTDVFLICYSVVSPSSFDN-VTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQ 135 (195)
Q Consensus 58 ~~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~ 135 (195)
+-.+|||. .........+.++|+++.|+|+.++.+... ....|+ .+.|.++|+||+|+.....
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~~-------- 67 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAAV-------- 67 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHHH--------
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHHH--------
Confidence 44678875 333344556789999999999999876542 111122 4789999999999976421
Q ss_pred CCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 136 NLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.+...++.+..+ .+++.+||+++.|+++++..+.+.+.
T Consensus 68 ------~~~~~~~~~~~g-~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 68 ------TQQWKEHFENQG-IRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp ------HHHHHHHHHTTT-CCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred ------HHHHHHHHHhcC-CcEEEEECCCcccHHHHHHHHHHHHH
Confidence 122233333334 58899999999999999998877664
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.3e-08 Score=75.39 Aligned_cols=167 Identities=12% Similarity=0.105 Sum_probs=85.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccce-eecc-ceeEEe-CCEEEEEEEEeCCCCcccccc-----CCCCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNY-SAPFTV-DGIPVSLGLWDTAGQEDYDRL-----RPLSYPQ 77 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~-~~~~-~~~~~~-~~~~~~l~~~D~~G~~~~~~~-----~~~~~~~ 77 (195)
...++++|++|+|||||++.+.+...+....-+. +... ...+.. ....-.+.+||++|-...... ....+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 4589999999999999999999843211111000 0000 001111 111113569999984321110 1111233
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHH----HHHHHH----
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKRE----QGQKLA---- 149 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---- 149 (195)
.+.+++ ++..... -+.+ .+...+... +.|+++|.||.|+.--+++..-. .....+ .+.++.
T Consensus 149 ~~~~~~-lS~G~~~-kqrv--~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgL-----D~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 149 YDFFII-ISATRFK-KNDI--DIAKAISMM--KKEFYFVRTKVDSDITNEADGEP-----QTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp CSEEEE-EESSCCC-HHHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCC-----TTCCHHHHHHHHHHHHHHHH
T ss_pred cCCeEE-eCCCCcc-HHHH--HHHHHHHhc--CCCeEEEEecCcccccCcccccC-----CHHHHHHHHHHHHHHHHHHH
Confidence 455554 6765211 1111 123333332 68999999999975322221110 111222 223332
Q ss_pred HHc--CCceeEEecc--CCcccHHHHHHHHHHHHcCCC
Q psy10443 150 NKI--RAVKYMECSA--LTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 150 ~~~--~~~~~~~~Sa--~~~~~v~~~~~~l~~~~~~~~ 183 (195)
.+. ....++.+|+ .++.|++++.+.+.+.+.+..
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 121 2235788999 556679999999988876544
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.62 E-value=5.4e-08 Score=70.80 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=34.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
...++++++|.||||||||+|+|.+.... .....++.... .+..+ . .+.+|||||-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~-~--~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVG-K--ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEET-T--TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeC-C--CEEEEECcCcC
Confidence 35689999999999999999999986531 22222322221 12222 2 35699999954
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.56 E-value=9.1e-08 Score=73.40 Aligned_cols=115 Identities=18% Similarity=0.171 Sum_probs=61.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC------CC----CCCcccce-------eeccceeEEe-----C------------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD------SF----PGEYVPTV-------FDNYSAPFTV-----D------------ 50 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~------~~----~~~~~~t~-------~~~~~~~~~~-----~------------ 50 (195)
++..|+++|.+|+||||++..|... .. .+.+.+.. ......++.. +
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999888641 10 01111110 0000000000 0
Q ss_pred -CEEEEEEEEeCCCCccccccCC------CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 51 -GIPVSLGLWDTAGQEDYDRLRP------LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 51 -~~~~~l~~~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
...+.+.++||||......... .....+|.+++|+|++......... ..+... -.+..+|+||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a----~~f~~~--~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA----LAFKEA--TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH----HHHHHS--CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH----HHHHhh--CCCeEEEEECCCCc
Confidence 0124566999999543221000 1122578999999998654332222 233321 23556889999986
Q ss_pred cc
Q psy10443 124 ED 125 (195)
Q Consensus 124 ~~ 125 (195)
..
T Consensus 253 ~~ 254 (443)
T 3dm5_A 253 AK 254 (443)
T ss_dssp SS
T ss_pred cc
Confidence 54
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=5e-08 Score=70.19 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCcc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQED 66 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~ 66 (195)
++++++|.+|+|||||+|+|.+..... ..++.+.... ..+..+ ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 599999999999999999999865421 1111111111 112222 2456999999654
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-07 Score=75.25 Aligned_cols=63 Identities=19% Similarity=0.087 Sum_probs=39.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEe-----CCEEEEEEEEeCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTV-----DGIPVSLGLWDTAGQED 66 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~-----~~~~~~l~~~D~~G~~~ 66 (195)
.+.+.|+|+|.+|+|||||+|+|++....-...+++.........+ ......+.++||||-..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 3567899999999999999999998753223333332222221111 11223456999999543
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.50 E-value=1e-07 Score=69.91 Aligned_cols=95 Identities=20% Similarity=0.189 Sum_probs=60.9
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHH
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQG 145 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
+-+.+.+..+.++|.+++|+|+.+|..-....+.++..... .++|.++|+||+|+..+..... ..+..
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~~~----------~~~~~ 142 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTED----------TIQAY 142 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHH----------HHHHH
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhhhHH----------HHHHH
Confidence 44455566788999999999999876554444445444433 3789999999999987531000 01122
Q ss_pred HHHHHHcCCceeEEeccCCcccHHHHHH
Q psy10443 146 QKLANKIRAVKYMECSALTQRGLRQVFD 173 (195)
Q Consensus 146 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 173 (195)
..+....+ .+++.+||.++.|+++++.
T Consensus 143 ~~~y~~~g-~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 143 AEDYRNIG-YDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp HHHHHHHT-CCEEECCHHHHTTCTTTGG
T ss_pred HHHHHhCC-CeEEEEecCCCCCHHHHHh
Confidence 23333345 5788889888887766544
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=8.4e-08 Score=69.03 Aligned_cols=94 Identities=7% Similarity=-0.005 Sum_probs=60.1
Q ss_pred CCCCccc-cccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCC
Q psy10443 61 TAGQEDY-DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSP 139 (195)
Q Consensus 61 ~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~ 139 (195)
+|||... .......+.++|+++.|+|+.++.+..... . .. . +.|.++|+||+|+.....
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l-~l----l-~k~~iivlNK~DL~~~~~------------ 63 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--V-DF----S-RKETIILLNKVDIADEKT------------ 63 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--S-CC----T-TSEEEEEEECGGGSCHHH------------
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--H-Hh----c-CCCcEEEEECccCCCHHH------------
Confidence 5776532 223445678999999999999886654321 1 11 1 789999999999976421
Q ss_pred ccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 140 VKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
.+....+.+..+ .++ .+||+++.|+++++..+.+.
T Consensus 64 --~~~~~~~~~~~g-~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 64 --TKKWVEFFKKQG-KRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp --HHHHHHHHHHTT-CCE-EECCTTSCHHHHHHHHCCCT
T ss_pred --HHHHHHHHHHcC-CeE-EEECCCCcCHHHHHHHHHHh
Confidence 122333344444 567 99999999999988876543
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-06 Score=66.35 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=61.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC------CC---C-CCccc----------------------ceeec--c--ceeEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD------SF---P-GEYVP----------------------TVFDN--Y--SAPFT 48 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~------~~---~-~~~~~----------------------t~~~~--~--~~~~~ 48 (195)
++..|+++|.+|+||||++..|... .. . ..+.+ ++.+. . .....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 3467999999999999999888762 00 0 00100 00000 0 00000
Q ss_pred eCCEEEEEEEEeCCCCccccc-----c-CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCC-c-EEEEeeCC
Q psy10443 49 VDGIPVSLGLWDTAGQEDYDR-----L-RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA-P-IILVGTKI 120 (195)
Q Consensus 49 ~~~~~~~l~~~D~~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~vvv~nK~ 120 (195)
. ..+.+.++||||...... + ....+..+|.+++|+|++.... ... ....+. ..+ | ..+|+||.
T Consensus 178 ~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~-~~~~~~---~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 178 F--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI-QAKAFK---EAVGEIGSIIVTKL 248 (432)
T ss_dssp T--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH-HHHHHH---TTSCSCEEEEEECS
T ss_pred h--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH-HHHHHh---hcccCCeEEEEeCC
Confidence 1 234556999999654211 0 0112336899999999875532 221 122222 245 6 88999999
Q ss_pred Cccc
Q psy10443 121 DLRE 124 (195)
Q Consensus 121 D~~~ 124 (195)
|...
T Consensus 249 D~~~ 252 (432)
T 2v3c_C 249 DGSA 252 (432)
T ss_dssp SSCS
T ss_pred CCcc
Confidence 9754
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.26 E-value=3.1e-07 Score=70.37 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhh
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~ 27 (195)
++.-|+++|.+||||||++..|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999998886
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=98.19 E-value=4e-08 Score=76.56 Aligned_cols=113 Identities=13% Similarity=-0.002 Sum_probs=63.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccc--cccC--------C
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDY--DRLR--------P 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~--~~~~--------~ 72 (195)
..+.+|+++|.+|+||||+.++|..... ....++...... ......+......+||..|.+.+ +..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999999876421 111122211100 00011111123358898887332 2222 4
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCC
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKID 121 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D 121 (195)
.++...++.++|+|.++. +..... .|...++.. +.+++.+-..++
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~-~~~~~~~~~--~~~vv~l~~~~~ 160 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRA-MIFNFGEQN--GYKTFFVESICV 160 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHH-HHHHHHHHH--TCEEEEEEECCC
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHH-HHHHHHHhc--CCcEEEEEEECC
Confidence 455567888999999987 344333 466666654 445555544444
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.14 E-value=2e-06 Score=69.07 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.++|+|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999999864
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=60.17 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=54.7
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH---H
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN---K 151 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 151 (195)
..++|.+++|... +|..-....+.++...... ++|.++|+||+|+..+.. .+....|.. .
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~--------------~~~~~~~~~~y~~ 190 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG--------------MDFVNEQMDIYRN 190 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH--------------HHHHHHHHHHHHT
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh--------------HHHHHHHHHHHHh
Confidence 5689999987554 5654444434455444333 788899999999986531 111233333 3
Q ss_pred cCCceeEEeccCCcccHHHHHHHH
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEA 175 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l 175 (195)
.+ .+++.+|+.++.|++++...+
T Consensus 191 ~G-~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 191 IG-YRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp TT-CCEEECBTTTTBTHHHHHHHH
T ss_pred CC-CcEEEEecCCCcCHHHHHHhc
Confidence 44 678999999999999887653
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.09 E-value=3.7e-06 Score=61.52 Aligned_cols=91 Identities=11% Similarity=0.058 Sum_probs=51.1
Q ss_pred EEEEEEeCCCCcc--ccc-cCC-----CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCccc
Q psy10443 54 VSLGLWDTAGQED--YDR-LRP-----LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLRE 124 (195)
Q Consensus 54 ~~l~~~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~ 124 (195)
+.+.++||||... ... +.. .....+|.+++|+|++... +... ....+.. ..| ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~-~~~~~~~---~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYD-LASKFNQ---ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHH-HHHHHHH---TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHH-HHHHHHh---hCCCCEEEEeCCCCCc
Confidence 4566999999765 211 110 1233689999999987432 2221 1222222 356 678899999754
Q ss_pred chHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHH
Q psy10443 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQ 170 (195)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 170 (195)
.. ..........+ .|+..++ .|+++++
T Consensus 254 ~~----------------g~~~~~~~~~~-~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 KG----------------GGALSAVAATG-ATIKFIG--TGEKIDE 280 (297)
T ss_dssp TH----------------HHHHHHHHTTT-CCEEEEE--CSSSTTC
T ss_pred ch----------------HHHHHHHHHHC-cCEEEEe--CCCChhh
Confidence 31 23344555565 5666654 4555543
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=3.5e-05 Score=59.38 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+-.-|.|+|.+++|||+|+|.|++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhh
Confidence 345689999999999999999985
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=2e-05 Score=54.51 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=22.2
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|.+.+...|+++|++|||||||++.+.+
T Consensus 1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 1 MSAPKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp ----CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 6677788999999999999999998876
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.62 E-value=3.4e-05 Score=53.11 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=23.9
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
|+-++...|+++|++||||||+++.|.+..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 566677789999999999999999998753
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=5.6e-05 Score=51.35 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.8
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|+++....|++.|.+||||||+.+.|..
T Consensus 1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 7777677899999999999999998865
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=5.4e-05 Score=51.30 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=24.2
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
|..++..+|+++|.+||||||+.+.|...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 55567789999999999999999988653
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.56 E-value=4.2e-05 Score=51.65 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988764
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.54 E-value=5e-05 Score=52.17 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=21.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
..+.-.|+++|++||||||+++.|.+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999998875
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=4.8e-05 Score=51.38 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
--++++|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999863
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.50 E-value=6.7e-05 Score=51.40 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
++.--|+|+|++|+|||||++.|.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 44557899999999999999999864
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=6.1e-05 Score=52.14 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=22.5
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|..+++..|++.|.+||||||+.+.|..
T Consensus 4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 4 MAARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp ---CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4445678899999999999999999875
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.49 E-value=7.6e-05 Score=51.48 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=22.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|+...|++.|.+||||||+.+.|..
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999999875
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=9.8e-05 Score=49.46 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=21.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++.-.|+++|.+||||||+.+.|.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5567899999999999999998865
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=6e-05 Score=51.75 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
-.++|+|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999876
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.46 E-value=6e-05 Score=50.56 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=19.6
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|+.|+ +|+++|.+||||||+.+.|..
T Consensus 1 ~~~m~--~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 1 MSLAK--NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp ----C--CEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCC--EEEEEcCCCCCHHHHHHHHHH
Confidence 45443 699999999999999988865
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.45 E-value=9.7e-05 Score=50.16 Aligned_cols=26 Identities=12% Similarity=0.004 Sum_probs=22.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.+.-.++++|++||||||+++.+.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999999874
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.42 E-value=6.2e-05 Score=55.23 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.++++|++|||||||+|.+.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 47899999999999999999874
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00011 Score=49.96 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+|+|++|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999764
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00012 Score=51.16 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
...|+++|++||||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998875
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00014 Score=50.27 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+...|+|+|++|+|||||++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999988875
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00011 Score=50.54 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.--++++|++|||||||++.+.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999874
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00013 Score=49.36 Aligned_cols=24 Identities=25% Similarity=0.108 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+...|+|.|.+||||||+.+.|..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998865
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00013 Score=51.16 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=20.9
Q ss_pred CCC-CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSS-GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~-~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|+. .+...|+|.|.+||||||+.+.|..
T Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 1 MGASARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp ------CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCccccCcEEEEECCCCCCHHHHHHHHHH
Confidence 544 3457899999999999999998874
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00015 Score=49.20 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++..|++.|.+||||||+.+.|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999988864
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00012 Score=51.19 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
--++|+|++|||||||++.+.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 46889999999999999998874
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00012 Score=49.00 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=17.8
Q ss_pred EEEEEcCCCCchHHHHHHhh
Q psy10443 8 KCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~ 27 (195)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 57899999999999999755
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00018 Score=48.60 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=21.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+...|+++|.+||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00013 Score=50.86 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.++|+|++|+|||||++.+.+.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998874
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00045 Score=50.62 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCchHHHHHHhh
Q psy10443 7 IKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~ 27 (195)
--++++|++|+|||||++.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999998
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.--|+++|++||||||+++.|...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 446889999999999999999875
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00017 Score=50.16 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++...|+++|.+||||||+.+.|..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998865
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999998874
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0002 Score=47.97 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5689999999999999999986
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0002 Score=49.04 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=22.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+...|++.|.+||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0002 Score=48.15 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=21.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++...|++.|.+|+||||+.+.|..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3456799999999999999998874
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00024 Score=48.69 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++..|++.|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998875
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00011 Score=50.44 Aligned_cols=65 Identities=9% Similarity=-0.020 Sum_probs=43.2
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcc
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH---CPDAPIILVGTKIDLR 123 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~ 123 (195)
+.+.++|+|+... ......+..+|.++++...+... ..+. .++..+... .++.++.+|+|+.|..
T Consensus 76 yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 76 YDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAA-GSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp SSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHH-HHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHH-HHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 5566999987642 23344566789999999876544 4443 244555432 4567889999999954
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00021 Score=50.73 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhh
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~ 27 (195)
++-.|+|+|++||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999998
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00025 Score=50.28 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=22.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++.+|++.|.+||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999865
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00016 Score=49.72 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
..-|+|+|++||||||+++.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999998763
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00022 Score=47.79 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+.-|++.|.+||||||+.+.|...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 346999999999999999998763
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00024 Score=47.94 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
...|+++|.+||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999865
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00016 Score=49.58 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+.--|+++|++|+||||+.+.|.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999988875
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00021 Score=47.53 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.|++.|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00023 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-.|+++|.+||||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999998875
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0002 Score=47.74 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
..|+++|.+||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998763
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00021 Score=47.55 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCchHHHHHHh
Q psy10443 7 IKCVVVGDGTVGKTCMLISY 26 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l 26 (195)
..|++.|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00028 Score=47.89 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++..|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00026 Score=50.45 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=21.9
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+.+++.|+|.|.+||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 445678999999999999999988865
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0003 Score=48.51 Aligned_cols=25 Identities=16% Similarity=0.003 Sum_probs=22.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999998875
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00023 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5799999999999999998864
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00023 Score=48.84 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
..|+++|.+||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00023 Score=47.04 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
=-++++|+.|+|||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999999999998754
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00024 Score=49.20 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00038 Score=47.73 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+...|+|.|.+||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998874
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00035 Score=50.80 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+++.-|++.|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00026 Score=49.08 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00024 Score=48.20 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0003 Score=48.59 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
++|+++|+|||||+|...+|...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988763
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00027 Score=52.88 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.++++|++|+|||||++.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999999753
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00022 Score=47.99 Aligned_cols=25 Identities=24% Similarity=0.072 Sum_probs=16.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++...|++.|.+||||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00028 Score=49.39 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00031 Score=48.83 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=21.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+...|+|+|.+||||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998865
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00032 Score=47.96 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998876
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00043 Score=48.07 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+++.|+|.|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00034 Score=47.34 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00032 Score=47.09 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|.+|+|||||++++...
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999863
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00034 Score=49.55 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00029 Score=48.00 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 588999999999999998876
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0004 Score=47.19 Aligned_cols=24 Identities=21% Similarity=0.128 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00051 Score=46.42 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=22.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++...|+++|.+|+||||+.+.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999998865
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00036 Score=48.47 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00036 Score=50.08 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00044 Score=47.27 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=23.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+++..|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 46788999999999999999998864
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00049 Score=50.68 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+..-|+|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4567899999999999999998876
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00036 Score=50.41 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999874
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00035 Score=48.71 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+...|+|+|.+||||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998865
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00036 Score=49.28 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999864
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00037 Score=47.84 Aligned_cols=22 Identities=14% Similarity=0.213 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00032 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999888753
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00058 Score=46.98 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+...|+++|.+|+||||+.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999864
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00053 Score=49.95 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++..|+|+|.+|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999999987654
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00039 Score=48.15 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998865
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00027 Score=49.59 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=15.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhh-cC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYT-TD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~-~~ 29 (195)
.--++++|++||||||+++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998 54
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0004 Score=49.95 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999999874
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0004 Score=49.71 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00045 Score=48.96 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00051 Score=47.22 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.|+++|.+||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00045 Score=49.11 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00044 Score=48.59 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00043 Score=49.66 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999999864
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00042 Score=50.77 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.=.++|+|++|+|||||++.+.+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 34789999999999999998875
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00054 Score=48.54 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+...|+++|+.||||||+++.+.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999998876
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00044 Score=48.92 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00041 Score=49.76 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
=.++|+|++||||||+++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999999876
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00063 Score=50.21 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+++-|.++|++||||||+++.+.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999988754
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00037 Score=48.19 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00047 Score=49.27 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00048 Score=49.03 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999874
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00048 Score=49.06 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999974
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00045 Score=49.26 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+++..|+++|.+||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998865
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00072 Score=46.39 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+..-|+++|.+|+||||+++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999988864
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00024 Score=47.60 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++|+|.+|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998863
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00069 Score=48.28 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=20.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhh
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~ 27 (195)
+...|+++|++||||||+.+.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00054 Score=49.08 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999874
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0005 Score=49.58 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00053 Score=49.35 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999974
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0006 Score=50.29 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=21.5
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|++|+ ..|+|+|++|||||||...|..
T Consensus 1 ~~~m~-~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 1 MSSLP-PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp --CCC-EEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCC-cEEEEECCCCCCHHHHHHHHHH
Confidence 66665 3699999999999999988875
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00049 Score=50.41 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.++++|++|+|||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998753
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00059 Score=49.40 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999874
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0015 Score=48.97 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
-++++|++|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998743
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00054 Score=48.87 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00063 Score=45.06 Aligned_cols=21 Identities=14% Similarity=0.127 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998875
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00065 Score=50.44 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=20.2
Q ss_pred CCCCc-ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGR-PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~-~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|++|. +.-|+|+|++|||||||...|..
T Consensus 1 ~~~m~m~~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 1 MTEMTKPFLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp -----CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCCceEEEECCCcCcHHHHHHHHHH
Confidence 66643 35799999999999999988875
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00063 Score=47.86 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=21.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++++.|++.|++|+||||+.+.+..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998874
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00066 Score=47.39 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00059 Score=49.07 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998874
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00052 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.145 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00077 Score=47.36 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+..+|+|+|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998865
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00073 Score=48.47 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00058 Score=51.39 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-+++|+|++|+|||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998874
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00087 Score=47.96 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00068 Score=46.15 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
....|++.|.+||||||+.+.|..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999988875
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00074 Score=45.37 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999888763
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0008 Score=44.87 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-+.++|.+|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999875
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00048 Score=50.17 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=18.8
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|++ +.+-|+|.|.+||||||+.+.|..
T Consensus 1 Ms~-~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 1 MSK-KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp -CT-TSCEEEEESCC---CCTHHHHHHH
T ss_pred CCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 554 455699999999999999988765
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00053 Score=44.77 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998863
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00096 Score=44.75 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=21.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++...|+++|.+||||||+.+.|..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998875
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00055 Score=50.22 Aligned_cols=22 Identities=23% Similarity=0.230 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999988864
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0008 Score=45.58 Aligned_cols=21 Identities=19% Similarity=0.026 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0024 Score=48.15 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00029 Score=48.64 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999875
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0011 Score=48.01 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+++.|+|.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998863
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.001 Score=48.90 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+..-|+|+|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998876
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00076 Score=48.71 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999998763
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0013 Score=46.11 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=21.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+..-|++.|.+||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999988763
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0012 Score=48.85 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++--++++|++|+||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998876
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00095 Score=48.59 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5889999999999999998864
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00086 Score=47.66 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998863
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00091 Score=47.69 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998865
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.001 Score=44.22 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998865
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0012 Score=48.41 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.-.++++|++||||||+++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345789999999999999998875
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0012 Score=43.82 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
+|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998865
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0016 Score=47.72 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.--++++|+.||||||+++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998876
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0014 Score=45.93 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+..-|+|.|..||||||+++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4567999999999999999998874
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=49.75 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 5789999999999999998874
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0016 Score=45.31 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-|+++|+|||||+|...+|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999988875
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=49.66 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999874
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0012 Score=44.47 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988865
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.001 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++|+|++||||||+++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999998763
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0011 Score=49.15 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.++++|++|+|||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=49.90 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0016 Score=45.00 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+...|+++|.+|+||||+.+.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998865
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0012 Score=49.59 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999999874
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0012 Score=49.58 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5789999999999999999874
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0009 Score=44.79 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999888753
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.002 Score=48.26 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999874
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0011 Score=49.82 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.++|+|++|+|||||++.+.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37899999999999999999874
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0012 Score=49.79 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.=.++|+|++||||||+++.+.+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999886
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0013 Score=49.48 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5789999999999999999874
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0013 Score=47.45 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999998863
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0012 Score=48.95 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998763
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=45.76 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999875
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0015 Score=45.70 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
..-.+++.|++|+|||++++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999988875
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0023 Score=47.99 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.--++++|++||||||++..+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 455789999999999999998876
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0011 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.230 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5789999999999999999874
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0019 Score=46.00 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+-.+++.|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 44699999999999999998875
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0021 Score=44.87 Aligned_cols=28 Identities=14% Similarity=0.000 Sum_probs=22.2
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|...+..-|++.|.+|+||||+++.|..
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445678899999999999999988764
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0017 Score=44.36 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999888753
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0024 Score=49.77 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.--++|+|.+|+||||+++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 455799999999999999998875
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0016 Score=45.17 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+++.|++.|.+|+||||+.+.|..
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999988865
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0019 Score=47.10 Aligned_cols=24 Identities=17% Similarity=0.068 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+.-+++.|+||+|||+|++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788889999999999998875
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0015 Score=46.41 Aligned_cols=23 Identities=22% Similarity=0.040 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-.|+++|.+|+||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998865
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0019 Score=43.40 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999765
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0023 Score=46.65 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0022 Score=43.85 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.|.+.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998865
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0016 Score=47.35 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988763
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0018 Score=44.68 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
--++++|++|+|||||+..+..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0018 Score=49.11 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999998863
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0017 Score=49.68 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++|+|+.||||||+++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998874
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0024 Score=43.51 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=21.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
..+.|.++|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999988753
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0015 Score=48.25 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++|+|..|+|||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999864
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0025 Score=50.10 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
-.++|+|++||||||+++.+.+-.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 359999999999999999998743
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0022 Score=41.46 Aligned_cols=25 Identities=12% Similarity=-0.013 Sum_probs=21.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
....|++.|++|+|||++.+.+...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999988764
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.002 Score=45.21 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999874
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0021 Score=44.76 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988865
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0022 Score=44.08 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999988875
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0026 Score=45.91 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
..-.+++.|++|+|||++++.+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999998763
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0029 Score=44.49 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=21.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+...|+++|.+|+||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998875
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0024 Score=47.75 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=+++++|++|+|||||++.+.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999875
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.003 Score=44.87 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+-.+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998875
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0037 Score=47.89 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++.-|+++|.+||||||+.++|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999875
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0024 Score=45.71 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+...|+|.|.+||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999888753
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0032 Score=45.93 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=19.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
....+++.|++|+|||++++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999976654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0022 Score=49.73 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=.++|+|+.|+|||||++.+.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999998874
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0024 Score=46.36 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-.+++.|++|+|||++++.+.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999998763
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0022 Score=44.06 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
-.+++.|+||+|||+++..+.+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999888765
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.003 Score=41.16 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=17.2
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q psy10443 9 CVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~ 28 (195)
.+|+|+.|+|||||+..+..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999999988653
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0027 Score=47.94 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.-.++++|++|+|||||++.+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344789999999999999998875
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0039 Score=43.93 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+.-|++.|..||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 567999999999999999988753
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0036 Score=42.82 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
...|+++|++|+|||+|...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999865
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.004 Score=44.66 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.....+++.|++|+|||++++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999988763
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.003 Score=46.15 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-.+++.|++|+|||++++.+.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999998863
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.003 Score=46.53 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
-.+++.|++|+|||+|++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998875
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0035 Score=50.16 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 7899999999999999998864
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0034 Score=48.38 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=+++++|++|+|||||++.+.+.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999875
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0049 Score=45.24 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+..-|+|+|++|||||+|...|...
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHh
Confidence 3446899999999999999998764
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0044 Score=43.41 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=20.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
..+++.++|.|||||||+..+|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 467999999999999999988865
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0039 Score=49.38 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.++++|+.|+|||||++.+.+-.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0057 Score=45.65 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=20.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
...+|+++|.+|+||||+...+..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 446899999999999999977654
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.012 Score=45.46 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCchHHHHHHhh
Q psy10443 7 IKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~ 27 (195)
.=|.|+|..++|||+|+|.++
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 456699999999999999554
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0034 Score=45.28 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999988875
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0062 Score=44.66 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=20.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++--|+++|.+|+||||++..+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 345689999999999999988765
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.005 Score=42.66 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=21.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|+..-|++.|.+|+||||+++.|..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5677899999999999999998864
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0024 Score=41.19 Aligned_cols=24 Identities=4% Similarity=0.072 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
...|++.|++|+|||++.+.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 457999999999999999887653
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0035 Score=45.75 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.-.++++|.+|+||||++..|..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999988753
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0036 Score=48.74 Aligned_cols=21 Identities=19% Similarity=0.397 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-++++|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998876
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0046 Score=47.03 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=20.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHh
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISY 26 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l 26 (195)
.+.+|++++|.+.|||||++.++
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHH
Confidence 46799999999999999999774
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.004 Score=49.80 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0036 Score=46.97 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-.++|.|++|+|||+|++.+.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998876
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.004 Score=45.34 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+..+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0042 Score=43.63 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999877654
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0047 Score=43.51 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=21.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|+..-|++.|.+||||||+++.|..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5667899999999999999988765
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0041 Score=43.57 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=18.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++..-|+|.|.+||||||+++.|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0043 Score=49.13 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
-++++|+.|+|||||++.+.+-.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999998753
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0048 Score=46.42 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++|.|++|+|||++++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998764
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0042 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=.++++|++|+|||||++.+.+-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 37899999999999999998864
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0038 Score=46.51 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=18.8
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q psy10443 9 CVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~ 28 (195)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0043 Score=46.36 Aligned_cols=22 Identities=23% Similarity=0.145 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-+.|+|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0049 Score=49.53 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.++++|+.|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0046 Score=48.12 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-+++++|++|+|||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999887653
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0071 Score=44.12 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999888763
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0046 Score=45.68 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+-.|++.|++|+|||+|++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999998863
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0056 Score=45.12 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-.+++.|++|+|||++++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999875
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0061 Score=41.00 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
++|+|.++||||++..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999854
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0047 Score=45.86 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988764
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0037 Score=49.95 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 7899999999999999888753
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0047 Score=45.50 Aligned_cols=26 Identities=4% Similarity=-0.023 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++-.+++.|+||+|||++++.+...
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999888763
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0055 Score=46.08 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=17.1
Q ss_pred EEEEcCCCCchHHHHHHhh
Q psy10443 9 CVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~ 27 (195)
.+|+|+.|+|||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999876
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0051 Score=47.21 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+--|++.|+||+|||+|++.+.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999876
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0052 Score=46.10 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
..-.+++.|++|+|||++++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 455799999999999999998875
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0062 Score=48.96 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.++++|+.|+|||||++.+.+-.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999998753
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0049 Score=49.40 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999988864
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0062 Score=40.65 Aligned_cols=23 Identities=13% Similarity=0.460 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-|++.|++|+||||+...|...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46899999999999999999874
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0069 Score=46.55 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=21.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+-.|++.|+||+|||+|++.+.+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHH
Confidence 355799999999999999999876
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0059 Score=48.35 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999974
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0063 Score=44.65 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988765
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0059 Score=45.33 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.+++.|++|+|||++++.+.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999888753
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0061 Score=45.60 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0026 Score=45.50 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
-.+++.|++|+|||++++.+..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999998876
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0063 Score=44.97 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++|.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999998764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0074 Score=47.81 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999975
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.011 Score=43.40 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+.-|+|+|++|||||+|...|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 345889999999999999998753
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.011 Score=43.94 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-|+|+|+.|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998864
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0051 Score=48.82 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=21.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+...|+++|.+|||||||.+.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4567999999999999999998763
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0069 Score=48.68 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0083 Score=46.16 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+-.|++.|+||+|||+|++.+.+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999999876
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0065 Score=45.01 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999998753
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.008 Score=44.48 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-.+++.|++|+|||++++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 347999999999999999998653
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0078 Score=42.95 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
...|++.|++|+|||++++.+...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHh
Confidence 457999999999999999998764
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.01 Score=41.18 Aligned_cols=25 Identities=20% Similarity=0.092 Sum_probs=21.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+..-|++-|.+|+||||+++.+...
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4677999999999999999998763
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0089 Score=41.41 Aligned_cols=24 Identities=25% Similarity=0.129 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+..=|++-|.+|+||||.++.|..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999988765
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0072 Score=45.27 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.|++.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999988763
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.008 Score=45.27 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
...+++.|++|+|||++.+.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 195 | ||||
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 2e-53 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 3e-50 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 4e-49 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 9e-46 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 2e-44 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 3e-43 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 9e-42 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 2e-39 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 9e-39 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 4e-38 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 2e-37 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 3e-37 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 5e-37 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 1e-36 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 1e-36 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 2e-36 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 2e-36 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 3e-35 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 4e-35 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 9e-35 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 2e-32 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 5e-31 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 9e-31 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 1e-30 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 2e-30 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 2e-30 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 6e-30 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 1e-29 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 3e-28 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 1e-27 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 2e-27 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 3e-27 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 7e-26 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 1e-24 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 3e-24 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 3e-24 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 8e-24 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 5e-23 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 9e-23 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 2e-22 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 4e-21 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-20 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 2e-20 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 3e-20 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 3e-20 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 2e-19 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 9e-19 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 2e-17 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 2e-17 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 4e-17 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 4e-17 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 5e-17 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 8e-17 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 5e-13 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 8e-12 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 1e-07 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 1e-04 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 6e-04 |
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 167 bits (422), Expect = 2e-53
Identities = 121/191 (63%), Positives = 151/191 (79%), Gaps = 1/191 (0%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
EDYDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
D T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L P P
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-P 180
Query: 185 VKRRQRKCVII 195
++ R+CV++
Sbjct: 181 EPKKSRRCVLL 191
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 158 bits (400), Expect = 3e-50
Identities = 130/180 (72%), Positives = 157/180 (87%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
EDYDRLRPLSYPQTDV LIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P P
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 155 bits (393), Expect = 4e-49
Identities = 114/185 (61%), Positives = 142/185 (76%), Gaps = 3/185 (1%)
Query: 1 MSSGRP---IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLG 57
M+ G +KCVVVGDG VGKTC+L+SY D+FP EYVPTVFD+Y+ TV G LG
Sbjct: 1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLG 60
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117
L+DTAGQEDYDRLRPLSYP TDVFLIC+SVV+P+SF NV +W PELK + P+ P +L+G
Sbjct: 61 LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIG 120
Query: 118 TKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177
T+IDLR+D +TL L++ P+ EQGQKLA +I A Y+ECSALTQ+GL+ VFDEA+
Sbjct: 121 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 180
Query: 178 AVLRP 182
A+L P
Sbjct: 181 AILTP 185
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 147 bits (370), Expect = 9e-46
Identities = 102/175 (58%), Positives = 124/175 (70%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V+VGDG GKTC+LI + D FP YVPTVF+NY A VDG V L LWDTAG ED
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR D
Sbjct: 63 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 122
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T L++ PVK E+G+ +AN+I A YMECSA T+ G+R+VF+ A RA L+
Sbjct: 123 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 144 bits (362), Expect = 2e-44
Identities = 79/176 (44%), Positives = 106/176 (60%), Gaps = 1/176 (0%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
K VVVGD GKT +L + D FP YVPTVF+NY+A F +D + L LWDT+G
Sbjct: 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YD +RPLSYP +D LIC+ + P + D+V KW E++ CP+ ++LVG K DLR D
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT-QRGLRQVFDEAVRAVLR 181
TL LS +PV +QG +A +I A Y+ECSAL + +R +F A A +
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 140 bits (353), Expect = 3e-43
Identities = 41/176 (23%), Positives = 82/176 (46%), Gaps = 15/176 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
+K +++GD VGK+C+L+ + D F ++ T+ ++ ++G V L +WDTAGQE
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ + Y ++ Y + +F N+ + +H +A ++LVG K D+
Sbjct: 63 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T +QG+ LA ++ + ++E SA + ++F + +
Sbjct: 123 VVT-------------ADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQE 164
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 136 bits (344), Expect = 9e-42
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 14/176 (7%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K +++GD VGKTC+L ++ D+F ++ T+ ++ +DG + L +WDTAGQE
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ + Y ++ Y + + SFDN+ + +H D +++G K D+ +
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R V +E+G+KLA +K+ME SA + F R +
Sbjct: 127 R------------QVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKA 169
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 130 bits (328), Expect = 2e-39
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 14/176 (7%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V++G+ VGKTC++ +T FP T+ D ++G V L +WDTAGQE
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ + Y + ++ Y + SF + ++ +LVG KIDL E
Sbjct: 66 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
RE +Q + ++ + + Y+E SA + ++F + ++
Sbjct: 126 RE-------------VSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 168
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 129 bits (325), Expect = 9e-39
Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 21/196 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K +++G+ VGK+C+L+ ++ D++ +Y+ T+ ++ +DG V L +WDTAGQE
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ + Y + +I Y V SF+ V ++ +LVG K DL++
Sbjct: 67 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR---- 181
R K + ++E SAL + F R +
Sbjct: 127 RV-------------VEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQ 173
Query: 182 ---PEPVKRRQRKCVI 194
E ++++ K +
Sbjct: 174 QNLNETTQKKEDKGNV 189
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 127 bits (319), Expect = 4e-38
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 14/174 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L +T F + T+ + V G + L +WDTAGQE
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ + Y L+ Y + S++++++S P+ IIL+G K DL
Sbjct: 65 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
R V E+ ++ A + ++E SA T + F EA + +
Sbjct: 125 R------------DVTYEEAKQFAEENGL-LFLEASAKTGENVEDAFLEAAKKI 165
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 125 bits (315), Expect = 2e-37
Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 16/183 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP-FTVDGIPVSLGLWDTAGQED 66
K V++GD VGK+ +L +T + F E T+ ++ VDG + +WDTAGQE
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
Y R+ Y L+ Y + +++NV H + I+LVG K DLR R
Sbjct: 66 YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 125
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
V ++ + + + ++E SAL + + F + + R V
Sbjct: 126 ------------AVPTDEARAF-AEKNNLSFIETSALDSTNVEEAFKNILTEIYR--IVS 170
Query: 187 RRQ 189
++Q
Sbjct: 171 QKQ 173
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 125 bits (314), Expect = 3e-37
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 14/175 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K +++GD VGK+C+L+ +T F + T+ + + +DG + L +WDTAGQE
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
+ + Y L+ Y + +F+++TS +H + I+L+G K DL R
Sbjct: 65 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 124
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
VKRE+G+ A + +ME SA T + + F + + R
Sbjct: 125 ------------DVKREEGEAFAREHGL-IFMETSAKTACNVEEAFINTAKEIYR 166
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 124 bits (312), Expect = 5e-37
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 15/176 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
K ++VGD VGKTC+L+ + +F G ++ TV ++ + VDG+ V L +WDTAGQE
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ + Y L+ Y V + +SFDN+ + ++ D ++L+G K+D +
Sbjct: 68 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R VKRE G+KLA + + +ME SA T + F + + R
Sbjct: 128 R------------VVKREDGEKLAKEY-GLPFMETSAKTGLNVDLAFTAIAKELKR 170
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 123 bits (309), Expect = 1e-36
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 14/177 (7%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R K VV+G G VGK+ + + + T +F +Y PT+ D Y VD P L + DTAG
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLR 123
E + +R L F++ YS+V+ SF ++ ++ P+ILVG K+DL
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
+R V +G+ LA + +ME SA ++ + ++F E VR +
Sbjct: 122 SER------------EVSSSEGRALAEEWGC-PFMETSAKSKTMVDELFAEIVRQMN 165
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 123 bits (309), Expect = 1e-36
Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 14/175 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQED 66
K +V+G+ GK+C+L + F + T+ + S V G V L +WDTAGQE
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
+ + Y L+ Y + S +++ +T+ + IIL G K DL DR
Sbjct: 67 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 126
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
E + + ++E SALT + + F + R +L
Sbjct: 127 E-------------VTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 123 bits (309), Expect = 2e-36
Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 31/199 (15%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-----------SAPFTVDGIPVS 55
IK + +GD VGKT L YT + F +++ TV ++ + V
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65
Query: 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPII 114
L LWDTAGQE + L + FL+ + + S SF NV + + C + I+
Sbjct: 66 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125
Query: 115 LVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174
L+G K DL + R V Q ++LA+K + Y E SA T + + + +
Sbjct: 126 LIGNKADLPDQR------------EVNERQARELADKYG-IPYFETSAATGQNVEKAVET 172
Query: 175 AVRAVLRPEPVKRRQRKCV 193
+ ++ +R +CV
Sbjct: 173 LLDLIM------KRMEQCV 185
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 122 bits (307), Expect = 2e-36
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 14/173 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTV-DGIPVSLGLWDTAGQED 66
K V +G+ +VGKT ++ + DSF Y T+ ++ + + + L LWDTAGQE
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
+ L P + ++ Y + + +SF T D I+LVG K DL + R
Sbjct: 62 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 121
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
+ E+G++ A ++ ++E SA ++Q+F A+
Sbjct: 122 QV------------SIEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAAL 161
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 119 bits (300), Expect = 3e-35
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 14/177 (7%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVF-DNYSAPFTVDGIPVSLGLWDTAGQE 65
+K +++G+ VGK+ +L+ +T D+F E T+ D +VDG L +WDTAGQE
Sbjct: 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ L P Y ++ Y V +F + + + + + ++ +E+
Sbjct: 68 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 127
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
RE V R +G K A K ++ ++E SA T G++ F+E V +++
Sbjct: 128 RE------------VDRNEGLKFARK-HSMLFIEASAKTCDGVQCAFEELVEKIIQT 171
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 119 bits (299), Expect = 4e-35
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQED 66
K +++G+ +VGKT L Y DSF +V TV ++ + + L +WDTAGQE
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
Y + Y F++ Y + + SF+ V + +A ++LVG K D+ ++R
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+ Q ++ E SA ++Q F+ V +
Sbjct: 127 VVSSERGRQLA-------------DHLGFEFFEASAKDNINVKQTFERLVDVICE 168
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 118 bits (297), Expect = 9e-35
Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 22/186 (11%)
Query: 3 SGRP--IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP-FTVDGIPVSLGLW 59
+G+ K +++GDG VGK+ ++ Y T+ F + T+ + VDG V++ +W
Sbjct: 1 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 60
Query: 60 DTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-----PDAPII 114
DTAGQE + LR Y +D L+ +SV SF N++ W E ++ P +
Sbjct: 61 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFV 119
Query: 115 LVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174
++G KID+ E + + E+ Q Y E SA + F+E
Sbjct: 120 ILGNKIDISERQVS-------------TEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 166
Query: 175 AVRAVL 180
AVR VL
Sbjct: 167 AVRRVL 172
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (281), Expect = 2e-32
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R K VV+G G VGK+ + + + F +Y PT+ D+Y VD L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLR 123
E + +R L F + YS+ + S+F+++ L+ D P+ILVG K D
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD-- 119
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
++ V +EQGQ LA + ++E SA ++ + ++F + VR + R
Sbjct: 120 ----------LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (271), Expect = 5e-31
Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQED 66
K V++G+G VGKT +++ Y + F +++ T+ ++ + G V+L +WDTAGQE
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
+ L P+ Y ++ ++ Y + SF V + K + + +VG KIDL ++R
Sbjct: 65 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
V ++ + A + A K+ SA +G+ ++F + + ++
Sbjct: 125 ------------HVSIQEAESYAESVGA-KHYHTSAKQNKGIEELFLDLCKRMI 165
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (270), Expect = 9e-31
Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 17/179 (9%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
K VVVG G VGK+ + I + F EY PT+ D+Y +DG L + DTAGQ
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDL 122
E+Y +R + FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
Q Q LA + Y+E SA T++G+ F VR + +
Sbjct: 121 AARTVE-------------SRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 108 bits (269), Expect = 1e-30
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 17/181 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFT--VDGIPVSLGLWDTAGQ 64
+K +++GD VGKT ++ Y D + +Y T+ ++ ++ +WDTAGQ
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA----PIILVGTKI 120
E + L Y D ++ Y V + SSF+N+ S L H ++ P +++G KI
Sbjct: 63 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
D E ++ V + Q+LA + + SA + F+E R+ L
Sbjct: 123 DAEESKK-----------IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 171
Query: 181 R 181
+
Sbjct: 172 Q 172
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (268), Expect = 2e-30
Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 14/175 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVF-DNYSAPFTVDGIPVSLGLWDTAGQED 66
K V++G+ VGK+ +++ + F T+ + +D V +WDTAGQE
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
Y L P+ Y ++ Y + + SF + + P+ I L G K DL R
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 127
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
Q + ++ +ME SA T + ++F + + +
Sbjct: 128 A-------------VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (267), Expect = 2e-30
Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 14/178 (7%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
K VVVG G VGK+ + I + F +Y PT+ D+Y+ +VDGIP L + DTAGQ
Sbjct: 5 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ 64
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLR 123
E++ +R FL+ +++ SF+ V + L+ D P++LVG K DL
Sbjct: 65 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R+ V Y E SA + + + F++ VRAV +
Sbjct: 125 SQRQ-------------VPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 169
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 106 bits (264), Expect = 6e-30
Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 14/176 (7%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLG-LWDTAG 63
R +K ++GD VGK+ ++ + DSF PT+ ++ + +WDTAG
Sbjct: 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123
E + L P+ Y + +I Y + +F + + +H P + + G
Sbjct: 63 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG------ 116
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
N ++ V + A+ I A ++E SA + ++F E R +
Sbjct: 117 ------NKCDLTDVREVMERDAKDYADSIHA-IFVETSAKNAININELFIEISRRI 165
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 105 bits (263), Expect = 1e-29
Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K ++VG G VGK+ + + + D F +Y PT D+Y +DG V + + DTAGQEDY
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKIDLRED 125
+R + + FL +S+ SF T+ + ++ + P +LVG K DL +
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAA-TADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R V E+ + A++ V Y+E SA T+ + +VF + +R +
Sbjct: 125 R------------QVSVEEAKNRADQWN-VNYVETSAKTRANVDKVFFDLMREIRA 167
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 102 bits (253), Expect = 3e-28
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 11/174 (6%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDG-IPVSLGLWDTAGQE 65
IK V++G+ VGK+ +++ + ++ F PT+ + V +WDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ L P+ Y L+ Y V P SF + D I LVG KID+ ++
Sbjct: 64 RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE 123
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
+ E+ + + + + E SA T + VF +
Sbjct: 124 GGERKVAREEGEKLAEE----------KGLLFFETSAKTGENVNDVFLGIGEKI 167
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 100 bits (249), Expect = 1e-27
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
+ V G G VGK+ +++ + +F Y+PTV D Y + D +L + DT G
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWY--PELKHHCPDAPIILVGTKIDLRE 124
+ ++ LS + F++ YS+ S S + + + E+K PI+LVG K D
Sbjct: 63 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R V+ + + LA + +ME SA ++++F E + R
Sbjct: 123 SR------------EVQSSEAEALARTWKC-AFMETSAKLNHNVKELFQELLNLEKR 166
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 100 bits (249), Expect = 2e-27
Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 18/186 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFD-NYSAPFTVDGIPVSLGLWDTAGQE 65
+K +++GD VGKT ++ Y F +Y T+ + VD V++ +WDTAGQE
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP----DAPIILVGTKID 121
+ L Y D ++ + V +P++F + S L P + P +++G KID
Sbjct: 63 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
L + ++ Q + Y E SA + Q F R L+
Sbjct: 123 LENRQVA-------------TKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 169
Query: 182 PEPVKR 187
E
Sbjct: 170 QETEVE 175
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 99.3 bits (246), Expect = 3e-27
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 14/181 (7%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
S + VVVG G VGK+ + I + F +Y PT+ D+Y+ +D L + DT
Sbjct: 1 SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDT 60
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKI 120
AGQE++ +R + FL+ +SV SF+ + L+ D P+IL+G K
Sbjct: 61 AGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKA 120
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DL R+ E+GQ+LA +++ YME SA + + Q F E VR +
Sbjct: 121 DLDHQRQVTQ------------EEGQQLARQLKV-TYMEASAKIRMNVDQAFHELVRVIR 167
Query: 181 R 181
+
Sbjct: 168 K 168
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 95.9 bits (237), Expect = 7e-26
Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 15/176 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VVVGDG VGK+ + I + F +Y PT+ D+Y +D L + DTAGQE++
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDR 126
+R D FLI YSV +SF++V L+ P+ILV K+DL R
Sbjct: 66 SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 125
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT-QRGLRQVFDEAVRAVLR 181
V R+QG+++A K + Y+E SA + + F + VR + +
Sbjct: 126 ------------KVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ 168
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.8 bits (229), Expect = 1e-24
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 14/176 (7%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
+K + G VGK+ +++ + T F EY PT+ Y T+D VS+ + DTAGQED
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
+ L+ S + + K + + +ILVG K DL R
Sbjct: 63 TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR 122
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRG-LRQVFDEAVRAVLR 181
V E+G+KLA ++ A + ECSA T G + ++F E R V R
Sbjct: 123 ------------QVSTEEGEKLATEL-ACAFYECSACTGEGNITEIFYELCREVRR 165
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.6 bits (226), Expect = 3e-24
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V+VGDG GKT + + T F +YV T+ + + F + P+ +WDTAGQE
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
+ LR Y Q +I + V S ++ NV W+ +L C + PI+L G K+D+++ +
Sbjct: 65 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183
+ ++ + ++Y + SA + + F R ++
Sbjct: 124 VK---------------AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 165
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 91.3 bits (225), Expect = 3e-24
Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 13/173 (7%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
++ ++VG GKT +L T+ TV+ +S +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 56
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
L + T + + + L ++LV +
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
N + + + G R A + GL + D +
Sbjct: 117 M--------NAAEITDKLGLHSLRH-RNWYIQATCATSGDGLYEGLDWLSNQL 160
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 90.5 bits (223), Expect = 8e-24
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 19/176 (10%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDGIPVSLGLWDTAG 63
R K +V+GD VGKTC+ + FP T+ + +DG + + LWDTAG
Sbjct: 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60
Query: 64 QEDYDRL-RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKID 121
QE + + Y + Y + + +SF ++ + +H D P ILVG K D
Sbjct: 61 QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR---GLRQVFDE 174
LR V + QK A+ E SA + +F
Sbjct: 121 LRSAI------------QVPTDLAQKFADTHSM-PLFETSAKNPNDNDHVEAIFMT 163
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.6 bits (218), Expect = 5e-23
Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 12/177 (6%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ K ++G +VGK+ + I + F Y PT+ + ++ TV+G L L DTAGQ
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 62
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
++Y + +++ YSV S SF+ + L I++
Sbjct: 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIML-------- 114
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
N + E+G+ LA A ++E SA + VF + +
Sbjct: 115 ---VGNKKDLHMERVISYEEGKALAESWNA-AFLESSAKENQTAVDVFRRIILEAEK 167
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 87.8 bits (216), Expect = 9e-23
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 15/176 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
IK VVVG+G VGK+ M+ Y F +Y T+ D V+ V L LWDTAGQE
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
++D + Y ++ +S SF+ ++ W ++ D P LV KIDL +D
Sbjct: 63 EFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDD 121
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+K E+ + LA +++ ++ S + +VF L+
Sbjct: 122 S------------CIKNEEAEGLAKRLKL-RFYRTSVKEDLNVSEVFKYLAEKHLQ 164
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.4 bits (215), Expect = 2e-22
Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 19/184 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
++ V+GD GK+ ++ + T S+ T + Y VDG + + + AG D
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 64
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC---PDAPIILVGTKIDLR 123
D + +S+ +SF V+ + LVGT+ +
Sbjct: 65 AKF-----SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 119
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183
V + + L ++ Y E A + +VF E + V+
Sbjct: 120 ASSPR----------VVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLR 169
Query: 184 PVKR 187
++
Sbjct: 170 KQQQ 173
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 84.0 bits (206), Expect = 4e-21
Identities = 28/178 (15%), Positives = 55/178 (30%), Gaps = 7/178 (3%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ K V +G GKT +L D + + ++ +D G
Sbjct: 12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE----ELTIAGMTFTTFDLGGH 67
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLR 123
R+ P + + + + + PI+++G KID
Sbjct: 68 IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAV 179
E L L +G ++ R ++ CS L ++G + F + +
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 81.9 bits (201), Expect = 1e-20
Identities = 28/174 (16%), Positives = 51/174 (29%), Gaps = 15/174 (8%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
+ + ++ +++G GKT +L T+ TV V +WD
Sbjct: 7 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGFNVETVTYKNVKFNVWD 62
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTK 119
GQ+ L Y T + D + + + DA I++ K
Sbjct: 63 VGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 122
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173
DL + ++ + G R A + GL +
Sbjct: 123 QDLPDAM---------KPHEIQEKLGLTRIRD-RNWYVQPSCATSGDGLYEGLT 166
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 82.0 bits (201), Expect = 2e-20
Identities = 32/180 (17%), Positives = 58/180 (32%), Gaps = 15/180 (8%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
+ + + K ++VG GKT +L ++ E V T S + +WD
Sbjct: 10 LFNHQEHKVIIVGLDNAGKTTILYQFSM----NEVVHTSPTIGSNVEEIVINNTRFLMWD 65
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP-DAPIILVGTK 119
GQE Y T+ ++ + Y L H A +++ K
Sbjct: 66 IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANK 125
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
D++E ++ + + C ALT GL Q + + +
Sbjct: 126 QDVKECM---------TVAEISQFLKLTSIKD-HQWHIQACCALTGEGLCQGLEWMMSRL 175
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 81.6 bits (200), Expect = 3e-20
Identities = 30/179 (16%), Positives = 58/179 (32%), Gaps = 15/179 (8%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
S + ++ +++G GKT +L PT+ N T+ + L +WD
Sbjct: 13 GSNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNV---ETLSYKNLKLNVWDL 68
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKI 120
GQ Y T + + + + L+ DA +++ K
Sbjct: 69 GGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQ 128
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
D + S V +E R+ + SA+ G+ + D + +
Sbjct: 129 DQPGAL---------SASEVSKELNLVELKD-RSWSIVASSAIKGEGITEGLDWLIDVI 177
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 81.2 bits (199), Expect = 3e-20
Identities = 29/179 (16%), Positives = 57/179 (31%), Gaps = 15/179 (8%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
+ + ++ +++G GKT +L ++ F+ +V L +WD
Sbjct: 12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDI 67
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKI 120
GQ + TD+ + F+ + L+ P+++ K
Sbjct: 68 GGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 127
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
DL S + R + CSALT G++ + + V
Sbjct: 128 DLLTAAP---------ASEIAEGLNLHTIRD-RVWQIQSCSALTGEGVQDGMNWVCKNV 176
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.4 bits (194), Expect = 2e-19
Identities = 33/167 (19%), Positives = 52/167 (31%), Gaps = 8/167 (4%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K + +G GKT +L D PT + + +D G
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS---EELAIGNIKFTTFDLGGHIQA 57
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDR 126
RL +P+ + + P FD + D P +++G KID
Sbjct: 58 RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173
L S L Q + R V+ CS + + G + F
Sbjct: 118 SEAELRSALGLLNTTGSQRIE---GQRPVEVFMCSVVMRNGYLEAFQ 161
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 77.0 bits (188), Expect = 9e-19
Identities = 24/172 (13%), Positives = 53/172 (30%), Gaps = 14/172 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
++ +VG GKT + + F + +PTV N + V++ LWD GQ
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM---RKITKGNVTIKLWDIGGQPR 59
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP-DAPIILVGTKIDLRED 125
+ + + + ++ + L P++++G K DL
Sbjct: 60 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 119
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177
+ + + R + S + + ++
Sbjct: 120 L---------DEKELIEKMNLSAIQD-REICCYSISCKEKDNIDITLQWLIQ 161
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.6 bits (182), Expect = 2e-17
Identities = 28/201 (13%), Positives = 60/201 (29%), Gaps = 29/201 (14%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R +K +++G G GK+ + VPT + D V + D GQ
Sbjct: 1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE---YPFDLQSVIFRMVDVGGQ 55
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSK----------WYPELKHHC-PDAPI 113
R + + ++ + + + + ++ +
Sbjct: 56 RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 115
Query: 114 ILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM-------------EC 160
IL K DL E++ + L + ++ + A + ++
Sbjct: 116 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFT 175
Query: 161 SALTQRGLRQVFDEAVRAVLR 181
A +R VF +L+
Sbjct: 176 CATDTENIRFVFAAVKDTILQ 196
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 74.2 bits (181), Expect = 2e-17
Identities = 26/201 (12%), Positives = 58/201 (28%), Gaps = 32/201 (15%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R +K +++G G GK+ ++ G + + ++D GQ
Sbjct: 1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVET--------HFTFKDLHFKMFDVGGQ 52
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNV----------TSKWYPELKHHC-PDAPI 113
+ + + C ++ + + D I
Sbjct: 53 RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 112
Query: 114 ILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI-------------RAVKYMEC 160
IL K DL E++ + L+ ++ A I + +
Sbjct: 113 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFT 172
Query: 161 SALTQRGLRQVFDEAVRAVLR 181
A + ++ VFD +++
Sbjct: 173 CATDTKNVQFVFDAVTDVIIK 193
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 72.8 bits (177), Expect = 4e-17
Identities = 27/176 (15%), Positives = 52/176 (29%), Gaps = 15/176 (8%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R ++ +++G GKT +L + + PT+ N +WD GQ
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNIKTLEHRGFKLN---IWDVGGQ 56
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLR 123
+ + TD + + + L A +++ K DL
Sbjct: 57 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 116
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
+ L ++ + CSA+T L D + +
Sbjct: 117 GALSCNAIQEALELDSIRSHH----------WRIQGCSAVTGEDLLPGIDWLLDDI 162
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 72.8 bits (177), Expect = 4e-17
Identities = 34/186 (18%), Positives = 57/186 (30%), Gaps = 21/186 (11%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R ++ +++G GKT +L GE V T+ TV + +WD G
Sbjct: 4 REMRILILGLDGAGKTTILYRLQV----GEVVTTIPTIGFNVETVTYKNLKFQVWDLGGL 59
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLR 123
Y TD + S+ L+ A +++ K D+
Sbjct: 60 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 119
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183
+ S + G R + + SA GL + + V
Sbjct: 120 QAM---------TSSEMANSLGLPALKD-RKWQIFKTSATKGTGLDEAMEWLVET----- 164
Query: 184 PVKRRQ 189
+K RQ
Sbjct: 165 -LKSRQ 169
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.9 bits (177), Expect = 5e-17
Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 17/178 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTT--DSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65
+ V++G+ VGK+ + + DS + D Y VDG ++ L D +
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 64
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPE--LKHHCPDAPIILVGTKIDLR 123
+ Q + ++ + S+ + D PIILVG
Sbjct: 65 GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG------ 118
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
N V +G+ A K++E SA Q ++++F+ VR V
Sbjct: 119 ------NKSDLVRCREVSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGIVRQVRL 169
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.1 bits (175), Expect = 8e-17
Identities = 46/185 (24%), Positives = 70/185 (37%), Gaps = 20/185 (10%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K +++G VGK+ + + G Y VDG SL ++D Q+
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKIDLREDR 126
L D ++I YSV SF+ + + D PIILVG K DL R
Sbjct: 62 RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
V ++G+ A K++E SA ++ +F+ VR +
Sbjct: 122 ------------EVSVDEGRACAVVFDC-KFIETSAALHHNVQALFEGVVRQIR-----L 163
Query: 187 RRQRK 191
RR K
Sbjct: 164 RRDSK 168
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.6 bits (151), Expect = 5e-13
Identities = 29/202 (14%), Positives = 55/202 (27%), Gaps = 31/202 (15%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R +K +++G G GK+ L PT + + + V + D GQ
Sbjct: 1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE---YDFEIKNVPFKMVDVGGQ 54
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-----------PDAPI 113
+ + L S + + + I
Sbjct: 55 RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114
Query: 114 ILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM--------------E 159
IL K DL E++ + + + L + K +
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174
Query: 160 CSALTQRGLRQVFDEAVRAVLR 181
+A+ +R VF + +L
Sbjct: 175 TTAINTENIRLVFRDVKDTILH 196
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.3 bits (142), Expect = 8e-12
Identities = 24/195 (12%), Positives = 55/195 (28%), Gaps = 30/195 (15%)
Query: 10 VVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR 69
+ VG GKT + + T + + ++ D+ + + SL L D G E
Sbjct: 4 LFVGLCDSGKTLLFVRLLTGQYR-DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 70 LRPLSY-PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA----PIILVGTKIDL-- 122
+ + + +++ ++ +++ K D+
Sbjct: 63 QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122
Query: 123 -REDRETLNLLSEQNLSPVKREQGQKLANKIRA---------------------VKYMEC 160
+ + L ++ + + V+++EC
Sbjct: 123 AKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLEC 182
Query: 161 SALTQRGLRQVFDEA 175
SA RG D
Sbjct: 183 SAKGGRGDTGSADIQ 197
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.8 bits (113), Expect = 1e-07
Identities = 18/131 (13%), Positives = 39/131 (29%), Gaps = 20/131 (15%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
+ +++G G GK+ ++ V T V+ ++D GQ D
Sbjct: 8 RLLLLGAGESGKSTIVKQMRI----LHVVLTSGIFET----KFQVDKVNFHMFDVGGQRD 59
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSK----------WYPELKHHCP-DAPIIL 115
R + + + S + ++ + + +IL
Sbjct: 60 ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVIL 119
Query: 116 VGTKIDLREDR 126
K DL ++
Sbjct: 120 FLNKQDLLAEK 130
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.8 bits (89), Expect = 1e-04
Identities = 25/173 (14%), Positives = 55/173 (31%), Gaps = 19/173 (10%)
Query: 10 VVVGDGTVGKTCMLISYTTDSFPGEYVPT----VFDNYSAPFTVDGIPVSLGLWDTAGQE 65
++ G GKT +L TTDS V D + T+ P +
Sbjct: 7 IIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPG----HVKLRYK 62
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA-----PIILVGTKI 120
D L+ + + + S V P +++ ++ + I++ K
Sbjct: 63 LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKS 121
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173
+L R + ++ E + + + +++ +E + D
Sbjct: 122 ELFTARP-----PSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLD 169
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 36.6 bits (83), Expect = 6e-04
Identities = 20/175 (11%), Positives = 48/175 (27%), Gaps = 27/175 (15%)
Query: 7 IKCVVVGDGTVGKTCMLISYT------TDSFPGEYVPTVF-DNYSAPFTVDGIPVSLGLW 59
+K V+ G GK+ +L + G + + + I +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61
Query: 60 DTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTK 119
+ E R + ++ + + + W + PI +V K
Sbjct: 62 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174
D+ + + +++ + SA T G+ + +
Sbjct: 122 ADITGETLGM--------------------SEVNGHALIRLSARTGEGVDVLRNH 156
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 195 | |||
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 100.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 100.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 100.0 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 100.0 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 100.0 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 100.0 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.97 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.96 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.95 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.95 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.95 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.95 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.93 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.93 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.93 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.93 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.93 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.92 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.92 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.91 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.9 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.9 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.89 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.89 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.89 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.89 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.89 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.88 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.88 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.86 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.85 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.85 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.79 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.76 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.75 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.74 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.74 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.73 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.73 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.7 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.63 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.63 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.53 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.52 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.34 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.3 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.16 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.11 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.1 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.01 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.97 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.66 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.63 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.44 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.39 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.35 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.34 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.33 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.29 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.23 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.19 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 98.18 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.16 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.13 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.98 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.97 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.9 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.88 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.81 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.81 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.79 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.76 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.74 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.7 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.68 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.66 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.64 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.6 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.59 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.57 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.54 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.5 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.48 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.48 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.48 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 97.43 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.42 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.4 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.39 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.38 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.38 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.35 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.34 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.34 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.33 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.33 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.32 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.31 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.29 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.28 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.28 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.27 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.26 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.25 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.24 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 97.23 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.21 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.19 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.18 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.18 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.16 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.16 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.16 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 97.16 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.14 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.14 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.13 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.12 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.1 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.1 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.09 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.08 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.08 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.05 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.05 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.03 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 97.02 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 97.01 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 96.99 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 96.97 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.97 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.95 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 96.91 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.85 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 96.83 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.81 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 96.75 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.69 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.68 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.68 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.66 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.62 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 96.6 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.57 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 96.54 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.52 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.51 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.49 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.44 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.43 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.43 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.41 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.41 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.36 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.35 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.33 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.2 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.14 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.09 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.09 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.08 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.03 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.97 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.96 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.91 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.88 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.85 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.83 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.8 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.77 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.71 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.65 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.64 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 95.57 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 95.54 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 95.54 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 95.48 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.38 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.37 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.35 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 95.31 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.3 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.25 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.22 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 95.15 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 95.08 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.03 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 94.89 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 94.87 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.81 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.81 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 94.79 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.6 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 94.48 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 94.31 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.29 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 94.19 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 94.12 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.08 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.03 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.93 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.78 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 93.42 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 93.37 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 92.9 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 92.88 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 92.71 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.66 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 92.1 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.68 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 91.5 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 91.22 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 90.17 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 89.69 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 89.38 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 89.35 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 89.35 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 89.3 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 89.27 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 89.25 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 89.21 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 89.04 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.96 | |
| d1zpda1 | 175 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 88.76 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 88.65 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 88.47 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 88.06 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 87.98 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 86.58 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 85.92 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 84.62 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 83.1 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 82.58 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 82.23 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 81.95 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 80.39 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 80.24 |
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-43 Score=243.90 Aligned_cols=191 Identities=63% Similarity=1.147 Sum_probs=171.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
|+.+||+++|++|||||||+++|..+.+..++.||.+........+++..+.+.+||++|+++|..++..+++++|++++
T Consensus 1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 80 (191)
T d2ngra_ 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 80 (191)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence 56899999999999999999999999999999999988888888889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||+++++|++.+.+.|...+....++.|+++|+||+|+...............+.+..++++.|++.++.++++++||+
T Consensus 81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 160 (191)
T d2ngra_ 81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL 160 (191)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence 99999999999998778888888888999999999999988766655555556677899999999999887899999999
Q ss_pred CcccHHHHHHHHHHHHcCCCccccCCCceeeC
Q psy10443 164 TQRGLRQVFDEAVRAVLRPEPVKRRQRKCVII 195 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~~~~~~~~~~c~~~ 195 (195)
+|.|++++|+.+++.+.++...++ +++|+||
T Consensus 161 ~~~~V~e~f~~l~~~~~~~~~~k~-~~~C~i~ 191 (191)
T d2ngra_ 161 TQKGLKNVFDEAILAALEPPEPKK-SRRCVLL 191 (191)
T ss_dssp TCTTHHHHHHHHHHHHTSCCSTTC-CCSCCCC
T ss_pred CCcCHHHHHHHHHHHHhcCcCCCC-CCCCeEC
Confidence 999999999999998887766543 4668775
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.2e-42 Score=234.77 Aligned_cols=182 Identities=63% Similarity=1.079 Sum_probs=164.9
Q ss_pred CCCC---cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCC
Q psy10443 1 MSSG---RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQ 77 (195)
Q Consensus 1 m~~~---~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~ 77 (195)
|++. ..+||+|+|++|||||||+++|+.+.+.+++.||..+........++..+.+.+||++|++.+..++..++++
T Consensus 1 m~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~ 80 (185)
T d2atxa1 1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM 80 (185)
T ss_dssp CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred CCCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccc
Confidence 5553 5689999999999999999999999999999999987777777888999999999999999999999999999
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
+|++++|||+++++|++.....|...++...+++|+++|+||+|+...............+.++.+++.++++.++.++|
T Consensus 81 a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~ 160 (185)
T d2atxa1 81 TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY 160 (185)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred cceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEE
Confidence 99999999999999999887778888888888999999999999988777766666666788999999999999998899
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++|||++|.|++++|+.+++.+..|
T Consensus 161 ~E~SAk~~~gv~e~F~~li~~il~P 185 (185)
T d2atxa1 161 VECSALTQKGLKTVFDEAIIAILTP 185 (185)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred EEecCCCCcCHHHHHHHHHHHHcCC
Confidence 9999999999999999999988653
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-41 Score=230.02 Aligned_cols=176 Identities=58% Similarity=1.012 Sum_probs=161.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+.||+|+|++|||||||+++|..+.+...+.||.+........+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 81 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence 47999999999999999999999999999999988777777888999999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|+++++|++.+...|...+....+++|+++++||+|+...............+.+..++++.+++.++..+|++|||++|
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~ 161 (177)
T d1kmqa_ 82 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 161 (177)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTC
T ss_pred ccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCC
Confidence 99999999998877888888888899999999999998877766666666667889999999999999889999999999
Q ss_pred ccHHHHHHHHHHHHcC
Q psy10443 166 RGLRQVFDEAVRAVLR 181 (195)
Q Consensus 166 ~~v~~~~~~l~~~~~~ 181 (195)
.|++++|+.+++.+++
T Consensus 162 ~gi~e~F~~i~~~~l~ 177 (177)
T d1kmqa_ 162 DGVREVFEMATRAALQ 177 (177)
T ss_dssp TTHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHhC
Confidence 9999999999988753
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-40 Score=228.05 Aligned_cols=180 Identities=72% Similarity=1.269 Sum_probs=164.9
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.+.+||+|+|++|||||||+++|+.+.+...+.+|..+.....+..++..+.+.+||++|++.+..++..+++++|+++
T Consensus 2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 81 (183)
T d1mh1a_ 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (183)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence 46789999999999999999999999999999999998877778888999999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|||++++++++.+...|...++...+++|+++|+||+|+...............+.....++..+++.++.++|++|||
T Consensus 82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA 161 (183)
T d1mh1a_ 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (183)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence 99999999999999877888888888899999999999998877666666666667788889999999999889999999
Q ss_pred CCcccHHHHHHHHHHHHcCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~ 182 (195)
++|.|++++|..|++.+..+
T Consensus 162 k~~~~V~e~F~~l~~~il~p 181 (183)
T d1mh1a_ 162 LTQRGLKTVFDEAIRAVLCP 181 (183)
T ss_dssp TTCTTHHHHHHHHHHHHSCC
T ss_pred CCCcCHHHHHHHHHHHHcCC
Confidence 99999999999999998766
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3e-39 Score=220.14 Aligned_cols=176 Identities=45% Similarity=0.842 Sum_probs=159.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+.||+++|++|||||||+++|..+.++.++.||..........+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence 47999999999999999999999999999999988877778888999999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|+++++|++.+...|...+....+++|+++|+||+|+...............+.++.++...+++.++..+|++|||++|
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~ 161 (179)
T d1m7ba_ 82 DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS 161 (179)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTB
T ss_pred ecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 99999999999877888888888899999999999998776665555555567788999999999998889999999999
Q ss_pred c-cHHHHHHHHHHHHcC
Q psy10443 166 R-GLRQVFDEAVRAVLR 181 (195)
Q Consensus 166 ~-~v~~~~~~l~~~~~~ 181 (195)
. |++++|+.+++.++.
T Consensus 162 ~n~i~~~F~~~~~~~l~ 178 (179)
T d1m7ba_ 162 ENSVRDIFHVATLACVN 178 (179)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHhc
Confidence 8 599999999998764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.7e-39 Score=217.02 Aligned_cols=163 Identities=28% Similarity=0.430 Sum_probs=147.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+|+|++|||||||+++|+++.+...+.||....+...+.+++..+.+.+||++|.+.+..++..+++++|++++
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il 81 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 81 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence 57799999999999999999999999998899999988888888899999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||+++++++..+.. |...+... .+++|+++|+||+|+... +.++.++++++++.++ ++++++|
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~------------r~v~~~~~~~~a~~~~-~~~~e~S 147 (167)
T d1xtqa1 82 VYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHME------------RVISYEEGKALAESWN-AAFLESS 147 (167)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHCSSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEECC
T ss_pred hcccchhhhhhhhhh-hhhhhhhcccccccceeeeccccccccc------------cchhHHHHHHHHHHcC-CEEEEEe
Confidence 999999999999985 76666543 357999999999999765 5588889999999999 6899999
Q ss_pred cCCcccHHHHHHHHHHHHc
Q psy10443 162 ALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~ 180 (195)
|++|.|++++|..|++.+.
T Consensus 148 ak~~~~v~~~f~~li~~~~ 166 (167)
T d1xtqa1 148 AKENQTAVDVFRRIILEAE 166 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhc
Confidence 9999999999999988764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-39 Score=218.97 Aligned_cols=165 Identities=32% Similarity=0.546 Sum_probs=148.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
|+++||+++|++|||||||+++|..+.+.+++.++.+..+...+.+++..+.+.+||++|++.+...+..+++++|++|+
T Consensus 1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 80 (167)
T d1c1ya_ 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence 68899999999999999999999999999999999988888888889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhh-h-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKH-H-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||++++++++.+.. |...+.+ . .+++|+++|+||+|+... +....+++..+++.+..++++++|
T Consensus 81 v~d~~~~~sf~~~~~-~~~~~~~~~~~~~~p~ilvgnK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~e~S 147 (167)
T d1c1ya_ 81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDE------------RVVGKEQGQNLARQWCNCAFLESS 147 (167)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHTTSCEEEECB
T ss_pred eeeccchhhhHhHHH-HHHHHHHhcCCCCCeEEEEEEecCcccc------------cccchhHHHHHHHHhCCCEEEEEc
Confidence 999999999999986 6665544 3 468999999999999776 457778889999988778999999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|.+|++.+.+
T Consensus 148 ak~g~gv~e~F~~l~~~i~k 167 (167)
T d1c1ya_ 148 AKSKINVNEIFYDLVRQINR 167 (167)
T ss_dssp TTTTBSHHHHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999988753
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-39 Score=219.18 Aligned_cols=166 Identities=33% Similarity=0.558 Sum_probs=148.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|++|||||||+++|+.+.+...+.+|..+.....+.+++..+.+.+||++|++++...+..+++++|++++
T Consensus 4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (173)
T d2fn4a1 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL 83 (173)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred CCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeeee
Confidence 46799999999999999999999999999999999888777888899999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||++++.++..+.. |...+... ..++|+++|+||+|+... +....+++..+++.++ +++++||
T Consensus 84 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilvgnK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~S 149 (173)
T d2fn4a1 84 VFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQ------------RQVPRSEASAFGASHH-VAYFEAS 149 (173)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECB
T ss_pred ecccccccccchhhh-hhHHHHHHhccCCCceEEEEEeechhhc------------cccchhhhhHHHHhcC-CEEEEEe
Confidence 999999999999875 76665543 468999999999999765 4577788999999998 7899999
Q ss_pred cCCcccHHHHHHHHHHHHcCCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~ 183 (195)
|++|.|++++|+.|++.+.+.+
T Consensus 150 ak~g~gv~e~f~~l~~~i~k~~ 171 (173)
T d2fn4a1 150 AKLRLNVDEAFEQLVRAVRKYQ 171 (173)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHHHh
Confidence 9999999999999999886543
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-39 Score=217.95 Aligned_cols=161 Identities=27% Similarity=0.383 Sum_probs=129.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|||||||+++|.+..+ ..+.++....+...+.+++..+.+.+||++|++.+..++..+++++|++|+|||
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d 80 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 80 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHhCCcc-CCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceecc
Confidence 7999999999999999999998765 344566666667778889999999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 87 VVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
++++++++.+.. |...+... ..++|+++|+||+|+... +.+...+++++++.++ ++++++||++
T Consensus 81 ~t~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sak~ 146 (168)
T d2gjsa1 81 VTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRS------------REVSVDEGRACAVVFD-CKFIETSAAL 146 (168)
T ss_dssp TTCHHHHHHHHH-HHHHHHHHCC--CCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-SEEEECBTTT
T ss_pred cccccccccccc-ccchhhcccccccceEEEeecccchhhh------------cchhHHHHHHHHHhcC-CEEEEEeCCC
Confidence 999999999985 87777654 356899999999999765 5578889999999999 6999999999
Q ss_pred cccHHHHHHHHHHHHcCC
Q psy10443 165 QRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~~~ 182 (195)
|.|++++|..|++.+...
T Consensus 147 ~~~v~~~f~~l~~~i~~~ 164 (168)
T d2gjsa1 147 HHNVQALFEGVVRQIRLR 164 (168)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999999887654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.5e-39 Score=215.72 Aligned_cols=162 Identities=31% Similarity=0.544 Sum_probs=146.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeec-cceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
.+||+++|++|||||||+++|+++.+...+.+|.+.. .......++..+.+.+||++|++.+..++..++++++++++|
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence 4799999999999999999999999988888888644 456777899999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
||++++++++.+. .|+..+....+++|+++|+||+|+.+. +.+..++++.+++.++ ++++++||++
T Consensus 82 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~iilVgnK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sak~ 147 (164)
T d1z2aa1 82 FSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDD------------SCIKNEEAEGLAKRLK-LRFYRTSVKE 147 (164)
T ss_dssp EETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred Eeccchhhhhhcc-cccccccccCCCceEEEeeccCCcccc------------eeeeehhhHHHHHHcC-CEEEEeccCC
Confidence 9999999999987 498888887789999999999999765 5578888999999998 6899999999
Q ss_pred cccHHHHHHHHHHHHcC
Q psy10443 165 QRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~~ 181 (195)
|.|++++|+.|++.+.+
T Consensus 148 g~~v~e~f~~l~~~~lq 164 (164)
T d1z2aa1 148 DLNVSEVFKYLAEKHLQ 164 (164)
T ss_dssp TBSSHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHhC
Confidence 99999999999998753
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=7.3e-39 Score=216.17 Aligned_cols=163 Identities=31% Similarity=0.522 Sum_probs=145.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+-+||+|+|++|||||||+++|+.+.+..++.||.+..+...+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence 56899999999999999999999999999999999888888888999999999999999999998899999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
||+++++++..+.. |+..+... .+++|+++|+||+|+.+. +.+..++++.+++.++ ++++++||
T Consensus 83 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiivgnK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa 148 (168)
T d1u8za_ 83 FSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRADQWN-VNYVETSA 148 (168)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEECCT
T ss_pred eeccchhhhhhHHH-HHHHHHHhhCCCCCcEEEEecccccccc------------ccccHHHHHHHHHHcC-CeEEEEcC
Confidence 99999999999984 87776654 468999999999998665 5588889999999998 78999999
Q ss_pred CCcccHHHHHHHHHHHHcC
Q psy10443 163 LTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~ 181 (195)
++|.|++++|.+|++.+.+
T Consensus 149 k~g~gv~e~f~~l~~~i~~ 167 (168)
T d1u8za_ 149 KTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp TTCTTHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHC
Confidence 9999999999999998754
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-38 Score=214.67 Aligned_cols=164 Identities=34% Similarity=0.515 Sum_probs=148.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|++|||||||+++|.++.+.+.+.||..+.+.....+++..+.+.+||++|++.+..++..+++++|++++
T Consensus 2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll 81 (169)
T d1x1ra1 2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 81 (169)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence 56899999999999999999999999998889999888777778889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||+++++|+..+.. |...+.+. ..++|+++++||+|+... +.++.+++.++++.++ ++++++|
T Consensus 82 v~d~~d~~Sf~~~~~-~~~~i~~~~~~~~~p~ilvgnK~Dl~~~------------~~v~~e~~~~~~~~~~-~~~~e~S 147 (169)
T d1x1ra1 82 VYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHL------------RKVTRDQGKEMATKYN-IPYIETS 147 (169)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTT------------CCSCHHHHHHHHHHHT-CCEEEEB
T ss_pred ecccccchhhhccch-hhHHHHhhccccCccEEEEecccchhhh------------ceeehhhHHHHHHHcC-CEEEEEc
Confidence 999999999999875 77766544 357999999999999876 5588899999999999 6999999
Q ss_pred cCCcc-cHHHHHHHHHHHHcC
Q psy10443 162 ALTQR-GLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~-~v~~~~~~l~~~~~~ 181 (195)
|+++. |++++|..|++.+.+
T Consensus 148 ak~~~~nV~~~F~~l~~~i~~ 168 (169)
T d1x1ra1 148 AKDPPLNVDKTFHDLVRVIRQ 168 (169)
T ss_dssp CSSSCBSHHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHHh
Confidence 99875 999999999998764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-38 Score=215.27 Aligned_cols=163 Identities=33% Similarity=0.555 Sum_probs=147.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
|+++||+++|++|||||||+++|+++.+...+.++.++.......+++..+.+.+||++|++.+...+..+++++|++++
T Consensus 1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il 80 (167)
T d1kaoa_ 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence 68999999999999999999999999999999999888878888889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||+++++++..+.. |...+... .+++|+++|+||+|+... +.+..++++.+++.++ ++++++|
T Consensus 81 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~S 146 (167)
T d1kaoa_ 81 VYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESE------------REVSSSEGRALAEEWG-CPFMETS 146 (167)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-SCEEEEC
T ss_pred eeeecchhhhhhhhc-hhhhhhhhccCCCCCEEEEEEccchhhc------------ccchHHHHHHHHHHcC-CeEEEEC
Confidence 999999999999985 66665543 468999999999999765 4577788999999998 6899999
Q ss_pred cCCcccHHHHHHHHHHHHc
Q psy10443 162 ALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~ 180 (195)
|++|.|++++|..|++.+.
T Consensus 147 ak~g~~i~e~f~~i~~~i~ 165 (167)
T d1kaoa_ 147 AKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHc
Confidence 9999999999999998764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8e-39 Score=216.68 Aligned_cols=162 Identities=27% Similarity=0.505 Sum_probs=143.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
++||+++|++|||||||+++|+++.+.+.+.||.+..+.....+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~ 81 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 81 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEe
Confidence 68999999999999999999999999999999998888878889999999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhh---hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKH---HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~---~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+++++++..+.. |...+.. ...++|+++|+||+|+... +.+..++++++++.++ +++++|||
T Consensus 82 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilVgnK~Dl~~~------------~~v~~~e~~~~~~~~~-~~~~e~Sa 147 (171)
T d2erxa1 82 SITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPS------------REVQSSEAEALARTWK-CAFMETSA 147 (171)
T ss_dssp ETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEECBT
T ss_pred ecccccchhcccc-hhhhhhhhhccCCCCcEEEEeeccccccc------------ccccHHHHHHHHHHcC-CeEEEEcC
Confidence 9999999999875 5554433 2467999999999998765 5578889999999998 69999999
Q ss_pred CCcccHHHHHHHHHHHHcC
Q psy10443 163 LTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~ 181 (195)
++|.|++++|..|++.+.+
T Consensus 148 k~~~~v~e~f~~l~~~~~~ 166 (171)
T d2erxa1 148 KLNHNVKELFQELLNLEKR 166 (171)
T ss_dssp TTTBSHHHHHHHHHHTCCS
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999986543
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.7e-38 Score=212.56 Aligned_cols=164 Identities=25% Similarity=0.472 Sum_probs=145.7
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
+++++||+++|++|||||||+++|..+.+...+.+|..... ......++..+.+.+||++|++.+..++..+++.++++
T Consensus 1 ~~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 80 (167)
T d1z0ja1 1 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 80 (167)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccce
Confidence 47899999999999999999999999999998888886665 45566788889999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
|+|||+++++++..+.. |...+.. ..++.|+++|+||+|+.+. +.+..+++++++..++ ++++++
T Consensus 81 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~ 146 (167)
T d1z0ja1 81 IIVYDITKEETFSTLKN-WVRELRQHGPPSIVVAIAGNKCDLTDV------------REVMERDAKDYADSIH-AIFVET 146 (167)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHSCTTSEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEEC
T ss_pred EEEeeechhhhhhhHHH-hhhhhhhccCCcceEEEecccchhccc------------cchhHHHHHHHHHHcC-CEEEEE
Confidence 99999999999999986 5555544 4578999999999999765 5588889999999998 689999
Q ss_pred ccCCcccHHHHHHHHHHHHc
Q psy10443 161 SALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~ 180 (195)
||++|.|++++|.+|++.+.
T Consensus 147 SAk~~~nV~e~f~~l~~~i~ 166 (167)
T d1z0ja1 147 SAKNAININELFIEISRRIP 166 (167)
T ss_dssp BTTTTBSHHHHHHHHHHHCC
T ss_pred ecCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999874
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-38 Score=211.82 Aligned_cols=163 Identities=27% Similarity=0.572 Sum_probs=138.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
..+||+|+|++|||||||+++|.++.+.+.+.||..... ......++..+.+.+||++|++.+..++..+++++|++++
T Consensus 2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (167)
T d1z08a1 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 81 (167)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence 358999999999999999999999999999999886555 4466778889999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|||+++++|+..+.. |+..+... ....|+++++||+|+... +.++.++++.+++.++ ++++++||
T Consensus 82 v~d~~~~~Sf~~~~~-~~~~~~~~~~~~~~~ilvgnK~Dl~~~------------~~v~~~e~~~~a~~~~-~~~~e~Sa 147 (167)
T d1z08a1 82 VYDITDEDSFQKVKN-WVKELRKMLGNEICLCIVGNKIDLEKE------------RHVSIQEAESYAESVG-AKHYHTSA 147 (167)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHGGGSEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEEBT
T ss_pred EEeCCchhHHHhhhh-hhhhcccccccccceeeeccccccccc------------cccchHHHHHHHHHcC-CeEEEEec
Confidence 999999999999985 66555543 467899999999999776 5588899999999998 68999999
Q ss_pred CCcccHHHHHHHHHHHHcC
Q psy10443 163 LTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~ 181 (195)
++|.|++++|.+|++.+.+
T Consensus 148 k~~~~v~e~F~~l~~~i~~ 166 (167)
T d1z08a1 148 KQNKGIEELFLDLCKRMIE 166 (167)
T ss_dssp TTTBSHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhh
Confidence 9999999999999998764
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=6.3e-38 Score=211.82 Aligned_cols=162 Identities=30% Similarity=0.565 Sum_probs=141.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeec-cceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
-+||+|+|++|||||||+++|.++.+...+.++.+.. ........+..+.+++||+||++++..++..+++++|++|+|
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv 84 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 84 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 4899999999999999999999998888888777544 355677788899999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
||+++++++..... |...+.. ..++.|+++++||+|+... +.+..++++.+++..+ ++++++||+
T Consensus 85 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sak 150 (169)
T d3raba_ 85 YDITNEESFNAVQD-WSTQIKTYSWDNAQVLLVGNKCDMEDE------------RVVSSERGRQLADHLG-FEFFEASAK 150 (169)
T ss_dssp EETTCHHHHHTHHH-HHHHHHHHCCSCCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEECBTT
T ss_pred EECccchhhhhhhh-hhhhhhcccCCcceEEEEEeecccccc------------cccchhhhHHHHHHcC-CEEEEecCC
Confidence 99999999998875 5444444 4568999999999998766 4577888999999998 699999999
Q ss_pred CcccHHHHHHHHHHHHcC
Q psy10443 164 TQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~ 181 (195)
+|.|++++|++|++.+.+
T Consensus 151 ~g~gv~e~f~~l~~~i~e 168 (169)
T d3raba_ 151 DNINVKQTFERLVDVICE 168 (169)
T ss_dssp TTBSHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHhh
Confidence 999999999999998765
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-38 Score=214.41 Aligned_cols=164 Identities=33% Similarity=0.576 Sum_probs=143.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.+||+++|++|||||||+++|..+.+...+.||.++.....+.+++..+.+.+||++|++.+...+..+++.+|++++
T Consensus 3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (171)
T d2erya1 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL 82 (171)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence 45699999999999999999999999999999999988888888999999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||+++++++..+.. |...+... ..+.|+++|+||+|+... +.+..+++..+++.++ +++++||
T Consensus 83 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilvgnK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~S 148 (171)
T d2erya1 83 VFSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDHQ------------RQVTQEEGQQLARQLK-VTYMEAS 148 (171)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHHTSSCCSEEEEEECTTCTTS------------CSSCHHHHHHHHHHTT-CEEEECB
T ss_pred eeccccccchhhHHH-HhHHHHhhcccCCCCEEEEEeccchhhh------------ccchHHHHHHHHHHcC-CEEEEEc
Confidence 999999999999875 66655443 457999999999999765 5578889999999998 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|..|++.+.+
T Consensus 149 ak~~~~i~e~f~~l~~~i~k 168 (171)
T d2erya1 149 AKIRMNVDQAFHELVRVIRK 168 (171)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999998754
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.9e-38 Score=213.28 Aligned_cols=163 Identities=26% Similarity=0.502 Sum_probs=142.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeec-cceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
-+||+++|++|||||||+++|..+.+...+.++.... ....+.+++..+.+.+||+||++.+..++..++++++++++|
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v 84 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT 84 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence 4899999999999999999999999888877777544 356778899999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
+|++++.++..... |...+.. .....|+++|+||+|+... +.+..++++.+++..+ +++++|||+
T Consensus 85 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~ilvgnK~D~~~~------------~~v~~~~~~~~~~~~~-~~~~~~SAk 150 (171)
T d2ew1a1 85 YDITCEESFRCLPE-WLREIEQYASNKVITVLVGNKIDLAER------------REVSQQRAEEFSEAQD-MYYLETSAK 150 (171)
T ss_dssp EETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CCEEECCTT
T ss_pred eecccchhhhhhhh-hhhhhcccccccccEEEEEeecccccc------------cchhhhHHHHHHHhCC-CEEEEEccC
Confidence 99999999999986 5555544 4567999999999998765 4477788999999988 689999999
Q ss_pred CcccHHHHHHHHHHHHcCC
Q psy10443 164 TQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~ 182 (195)
+|.|++++|.+|++.+...
T Consensus 151 tg~gV~e~f~~l~~~l~~~ 169 (171)
T d2ew1a1 151 ESDNVEKLFLDLACRLISE 169 (171)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999877543
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-38 Score=213.49 Aligned_cols=162 Identities=33% Similarity=0.499 Sum_probs=141.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
++||+++|++|||||||+++|+.+.|.+++.||.+..+......++..+.+.+||++|++.+. ....++++++++++||
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~ 80 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY 80 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence 689999999999999999999999999999999988887778889999999999999998774 4556788999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhh--hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~--~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|+++++++..+.. |...... ..++.|+++|+||+|+... +.++.++++++++.++ ++++++||+
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~------------r~V~~~e~~~~a~~~~-~~~~e~Sak 146 (168)
T d2atva1 81 DITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHS------------RQVSTEEGEKLATELA-CAFYECSAC 146 (168)
T ss_dssp ETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-SEEEECCTT
T ss_pred ccCCccchhhhhh-hcccccccccccCcceeeeccchhhhhh------------ccCcHHHHHHHHHHhC-CeEEEEccc
Confidence 9999999999875 5444433 3468999999999999765 5588899999999998 699999999
Q ss_pred Ccc-cHHHHHHHHHHHHcCC
Q psy10443 164 TQR-GLRQVFDEAVRAVLRP 182 (195)
Q Consensus 164 ~~~-~v~~~~~~l~~~~~~~ 182 (195)
+|. |++++|..|++.+.+.
T Consensus 147 tg~gnV~e~F~~l~~~i~~~ 166 (168)
T d2atva1 147 TGEGNITEIFYELCREVRRR 166 (168)
T ss_dssp TCTTCHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHHHh
Confidence 998 5999999999987643
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.6e-38 Score=211.13 Aligned_cols=163 Identities=34% Similarity=0.565 Sum_probs=147.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
|+++||+++|++|||||||+++|+++.+...+.++.+..+......++..+.+.+||++|++.+...+..+++.++++++
T Consensus 1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii 80 (166)
T d1ctqa_ 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence 57899999999999999999999999999989999988887778889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+|++++.+++.+. .|+..+... .+++|+++|+||+|+.. +.+..++++.+++.++ ++++++|
T Consensus 81 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~e~S 145 (166)
T d1ctqa_ 81 VFAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDLAA-------------RTVESRQAQDLARSYG-IPYIETS 145 (166)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHHTCSSCCEEEEEECTTCSC-------------CCSCHHHHHHHHHHHT-CCEEECC
T ss_pred eecccccccHHHHH-HHHHHHHHhcCCCCCeEEEEeccccccc-------------ccccHHHHHHHHHHhC-CeEEEEc
Confidence 99999999999987 488887764 36799999999999865 3467788999999998 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|+|++++|.+|++.+.+
T Consensus 146 ak~g~gi~e~f~~i~~~i~~ 165 (166)
T d1ctqa_ 146 AKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999998764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-37 Score=208.78 Aligned_cols=160 Identities=30% Similarity=0.548 Sum_probs=141.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+|+|++|||||||+++|.++.+...+.++.+... ......++..+.+.+||++|++.+...+..++..++++++||
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence 6999999999999999999999999888888875443 456667888999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHh-hhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~-~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|++++.++..+.. |...+. ...+++|+++|+||+|+.+. +.+..+++..+++.++ +++++|||++
T Consensus 81 d~~~~~s~~~i~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~SAk~ 146 (164)
T d1yzqa1 81 DITNVNSFQQTTK-WIDDVRTERGSDVIIMLVGNKTDLADK------------RQVSIEEGERKAKELN-VMFIETSAKA 146 (164)
T ss_dssp ETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECCTTT
T ss_pred ccccccchhhhHh-hHHHHHHhcCCCceEEEEecccchhhh------------hhhhHHHHHHHHHHcC-CEEEEecCCC
Confidence 9999999999986 555554 44578999999999999765 4477788999999998 6899999999
Q ss_pred cccHHHHHHHHHHHHc
Q psy10443 165 QRGLRQVFDEAVRAVL 180 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~ 180 (195)
|.|++++|.+|++.+.
T Consensus 147 g~~v~e~f~~i~~~l~ 162 (164)
T d1yzqa1 147 GYNVKQLFRRVAAALP 162 (164)
T ss_dssp CTTHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHhhC
Confidence 9999999999999875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-37 Score=208.52 Aligned_cols=161 Identities=28% Similarity=0.539 Sum_probs=141.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
-+||+|+|++|||||||+++|.++.+..++.++....+ .....+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv 83 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 83 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence 48999999999999999999999998888887765554 45677899999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
+|+++++++..+.. |...+.. ..+..|+++++||+|+... +....++++.+++.++ ++++++||+
T Consensus 84 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sak 149 (166)
T d1z0fa1 84 YDITRRSTYNHLSS-WLTDARNLTNPNTVIILIGNKADLEAQ------------RDVTYEEAKQFAEENG-LLFLEASAK 149 (166)
T ss_dssp EETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECCTT
T ss_pred eccCchHHHHHHHH-HHHHHHhhccccceEEEEcccccchhh------------cccHHHHHHHHHHHcC-CEEEEEeCC
Confidence 99999999998885 5555554 4578999999999998765 4477788999999988 699999999
Q ss_pred CcccHHHHHHHHHHHHc
Q psy10443 164 TQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~ 180 (195)
+|.|++++|..|++.++
T Consensus 150 tg~~v~e~f~~i~~~i~ 166 (166)
T d1z0fa1 150 TGENVEDAFLEAAKKIY 166 (166)
T ss_dssp TCTTHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 99999999999998874
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-38 Score=214.66 Aligned_cols=160 Identities=29% Similarity=0.523 Sum_probs=135.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
.+||+++|++|||||||+++|+.+.+...+.||.+..+ ......++..+.+.+||++|++.+..++..++++++++++|
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence 68999999999999999999999999899989886544 56667788899999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
||+++++|++.+.. |+..+....+++|+++|+||+|+.... ..++...++...+ ++++++||++
T Consensus 83 ~d~~~~~Sf~~~~~-~~~~~~~~~~~~piilvgnK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~e~Sak~ 146 (170)
T d1i2ma_ 83 FDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRK--------------VKAKSIVFHRKKN-LQYYDISAKS 146 (170)
T ss_dssp EETTSGGGGTTHHH-HHHHHHHHHCSCCEEEEEECCCCSCSC--------------CTTTSHHHHSSCS-SEEEEEBTTT
T ss_pred cccccccccchhHH-HHHHHhhccCCCceeeecchhhhhhhh--------------hhhHHHHHHHHcC-CEEEEEeCCC
Confidence 99999999999985 877777767899999999999997652 1233456677777 7899999999
Q ss_pred cccHHHHHHHHHHHHcC
Q psy10443 165 QRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~~ 181 (195)
|.|++++|.+|++.+..
T Consensus 147 ~~~v~e~f~~l~~~l~~ 163 (170)
T d1i2ma_ 147 NYNFEKPFLWLARKLIG 163 (170)
T ss_dssp TBTTTHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcc
Confidence 99999999999998864
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-37 Score=207.91 Aligned_cols=164 Identities=24% Similarity=0.438 Sum_probs=144.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
..+||+++|++|||||||+++|..+.+...+.++....+ ......++..+.+.+||++|++.+..++..++++++++++
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 84 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence 368999999999999999999999999888888876665 4566778889999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|+|+++++++..+...|....+...+++|+++|+||+|+... +.++.++++.+++.++ ++++++||+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~------------~~v~~e~~~~~~~~~~-~~~~e~SAk 151 (170)
T d1r2qa_ 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK------------RAVDFQEAQSYADDNS-LLFMETSAK 151 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECCTT
T ss_pred EeccchhhHHHHHHHHhhhhhhccCCCceEEeeccccccccc------------ccccHHHHHHHHHhcC-CEEEEeeCC
Confidence 999999999999886444444455678999999999998766 5588889999999988 699999999
Q ss_pred CcccHHHHHHHHHHHHcC
Q psy10443 164 TQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~ 181 (195)
+|.|++++|..|++.+.+
T Consensus 152 ~g~~V~e~f~~l~~~i~~ 169 (170)
T d1r2qa_ 152 TSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp TCTTHHHHHHHHHHTSCC
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999987764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-36 Score=208.64 Aligned_cols=165 Identities=25% Similarity=0.492 Sum_probs=144.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.-+||+|+|++|||||||+++|+.+.+...+.+|.+..+ ...+.+++..+.+.+||+||++++..++..++++++++|+
T Consensus 5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~ 84 (194)
T d2bcgy1 5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 84 (194)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 358999999999999999999999999888888887665 3567789999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|+|+++++++......|.........++|+++++||+|+... +.+..++...++...+ .+++++||+
T Consensus 85 v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~e~SAk 151 (194)
T d2bcgy1 85 VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK------------RVVEYDVAKEFADANK-MPFLETSAL 151 (194)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CCEEECCTT
T ss_pred EEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccc------------cchhHHHHhhhhhccC-cceEEEecC
Confidence 999999999999886444443445678999999999999775 4477788888888887 689999999
Q ss_pred CcccHHHHHHHHHHHHcCC
Q psy10443 164 TQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~ 182 (195)
+|.|++++|+.|++.+.+.
T Consensus 152 ~g~gi~e~f~~l~~~i~~~ 170 (194)
T d2bcgy1 152 DSTNVEDAFLTMARQIKES 170 (194)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHH
Confidence 9999999999999887643
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.1e-37 Score=206.81 Aligned_cols=163 Identities=29% Similarity=0.551 Sum_probs=138.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
-+||+|+|++|||||||++++.++.+...+.++..... ......++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv 82 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 82 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence 47999999999999999999999998887777764443 44566788889999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
+|+++++++..+.. |...+.. ..+++|+++|+||+|+... +....+++..+++.++ ++++++||+
T Consensus 83 ~d~~~~~sf~~~~~-~~~~~~~~~~~~~piilv~nK~D~~~~------------~~~~~~~~~~~a~~~~-~~~~e~Sa~ 148 (173)
T d2a5ja1 83 YDITRRETFNHLTS-WLEDARQHSSSNMVIMLIGNKSDLESR------------RDVKREEGEAFAREHG-LIFMETSAK 148 (173)
T ss_dssp EETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEEECTT
T ss_pred EeecChHHHHhHHH-HHHHHHHhCCCCCeEEEEecCCchhhh------------hhhHHHHHHHHHHHcC-CEEEEecCC
Confidence 99999999999986 5555554 4578999999999998765 4577788999999998 689999999
Q ss_pred CcccHHHHHHHHHHHHcCC
Q psy10443 164 TQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~ 182 (195)
+|.|++++|.++++.+.++
T Consensus 149 tg~~V~e~f~~i~~~i~~~ 167 (173)
T d2a5ja1 149 TACNVEEAFINTAKEIYRK 167 (173)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.9e-36 Score=202.65 Aligned_cols=162 Identities=32% Similarity=0.536 Sum_probs=131.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCc-ccceeec-cceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEY-VPTVFDN-YSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~-~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
-+||+|+|+++||||||+++|+.+.+...+ .++.+.. ....+..++..+.+.+||+||++.+..++..+++++|++++
T Consensus 6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~ 85 (170)
T d2g6ba1 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL 85 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEE
Confidence 489999999999999999999998875544 3443333 34567789999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|+|+++++++..+...|........+..|+++++||+|+... +.+..+++..+++.++ ++++++||+
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sak 152 (170)
T d2g6ba1 86 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE------------RVVKREDGEKLAKEYG-LPFMETSAK 152 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC------------CCSCHHHHHHHHHHHT-CCEEECCTT
T ss_pred EecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhc------------ccccHHHHHHHHHHcC-CEEEEEeCC
Confidence 999999999999886455555555678999999999998776 4578888999999998 699999999
Q ss_pred CcccHHHHHHHHHHHHc
Q psy10443 164 TQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~ 180 (195)
+|.|++++|.+|++.+.
T Consensus 153 ~g~gi~e~f~~l~~~i~ 169 (170)
T d2g6ba1 153 TGLNVDLAFTAIAKELK 169 (170)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHcC
Confidence 99999999999998875
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-36 Score=205.44 Aligned_cols=163 Identities=28% Similarity=0.498 Sum_probs=142.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
.+||+|+|++|||||||+++|..+.+...+.++..... ...+..++..+.+.+||+||++++..++..+++.++++++|
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 84 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence 48999999999999999999999999888888876664 34566788899999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
+|+++++++..+.. |...+.. ..+++|+++++||+|+... +....++...+++.++ ++++++||+
T Consensus 85 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sak 150 (174)
T d2bmea1 85 YDITSRETYNALTN-WLTDARMLASQNIVIILCGNKKDLDAD------------REVTFLEASRFAQENE-LMFLETSAL 150 (174)
T ss_dssp EETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECCTT
T ss_pred EecccchhHHHHhh-hhcccccccCCceEEEEEEecccccch------------hchhhhHHHHHHHhCC-CEEEEeeCC
Confidence 99999999999886 5554444 4578999999999998665 4467778889999888 799999999
Q ss_pred CcccHHHHHHHHHHHHcCC
Q psy10443 164 TQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~ 182 (195)
+|.|++++|.++.+.+.++
T Consensus 151 ~~~gi~e~f~~l~~~i~~~ 169 (174)
T d2bmea1 151 TGENVEEAFVQCARKILNK 169 (174)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHH
Confidence 9999999999999987644
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.6e-37 Score=206.94 Aligned_cols=164 Identities=29% Similarity=0.579 Sum_probs=113.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.-+||+++|++|||||||+++|+++.+...+.++.+... ...+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~ 84 (173)
T d2fu5c1 5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 84 (173)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence 348999999999999999999999888888888875443 5677889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHh-hhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|||++++.++..+.. |...+. ....+.|+++++||.|+... +....+++..++...+ ++++++||
T Consensus 85 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~~k~D~~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa 150 (173)
T d2fu5c1 85 VYDITNEKSFDNIRN-WIRNIEEHASADVEKMILGNKCDVNDK------------RQVSKERGEKLALDYG-IKFMETSA 150 (173)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEEC--CCSC------------CCSCHHHHHHHHHHHT-CEEEECCC
T ss_pred EEECCChhhHHHHHH-HHHHhhhhccCCceEEEEEecccchhh------------cccHHHHHHHHHHhcC-CEEEEEeC
Confidence 999999999999886 555554 44678999999999998876 3466677888888888 78999999
Q ss_pred CCcccHHHHHHHHHHHHcCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~ 182 (195)
++|+|++++|.+|++.+.++
T Consensus 151 ~~g~gv~e~f~~l~~~i~~k 170 (173)
T d2fu5c1 151 KANINVENAFFTLARDIKAK 170 (173)
T ss_dssp ---CCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988543
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-36 Score=204.71 Aligned_cols=166 Identities=28% Similarity=0.510 Sum_probs=128.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEE--eCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFT--VDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
-+||+++|++|||||||+++|+++.+...+.++.+........ .+...+.+.+||++|++.+...+..+++.++++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence 3799999999999999999999999888888877555443222 34455778899999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
|||++++.++..+. .|+..+... ..++|+++++||+|+.+.. +.+..+++++++..++.++++
T Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~v~~~~~~~~~~~~~~~~~~ 149 (175)
T d1ky3a_ 82 VYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKIDAEESK-----------KIVSEKSAQELAKSLGDIPLF 149 (175)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG-----------CCSCHHHHHHHHHHTTSCCEE
T ss_pred Eeecccccccchhh-hcchhhhhhhhhcccccCcEEEEecccchhhhh-----------cchhHHHHHHHHHHcCCCeEE
Confidence 99999999998887 487766542 2478999999999987643 446778899999999888999
Q ss_pred EeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
++||++|.|++++|.+|++.+.+.+
T Consensus 150 e~SA~~g~gv~e~f~~l~~~~l~~~ 174 (175)
T d1ky3a_ 150 LTSAKNAINVDTAFEEIARSALQQN 174 (175)
T ss_dssp EEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999876543
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-36 Score=204.55 Aligned_cols=165 Identities=30% Similarity=0.518 Sum_probs=138.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeec-cceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
-+||+|+|++|||||||+++|.++.+...+.++.... ....+.+++..+.+.+||++|++.|...+..+++.++++|+|
T Consensus 4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v 83 (175)
T d2f9la1 4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 83 (175)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence 4799999999999999999999998887777766444 355677899999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
||+++++|+..... |+..+... .+++|+++|+||+|+.+. +....+....+....+ .+++++||+
T Consensus 84 ~d~~~~~S~~~~~~-~~~~i~~~~~~~~piilvgnK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~ 149 (175)
T d2f9la1 84 YDIAKHLTYENVER-WLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTDEARAFAEKNN-LSFIETSAL 149 (175)
T ss_dssp EETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECCTT
T ss_pred EECCCcccchhHHH-HHHHHHHhcCCCCcEEEEEeeeccccc------------ccchHHHHHHhhcccC-ceEEEEecC
Confidence 99999999999985 66666554 467999999999999765 3355566677777777 799999999
Q ss_pred CcccHHHHHHHHHHHHcCCCc
Q psy10443 164 TQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~~~ 184 (195)
+|.|++++|+++++.+.+...
T Consensus 150 ~g~~i~e~f~~l~~~i~~~~~ 170 (175)
T d2f9la1 150 DSTNVEEAFKNILTEIYRIVS 170 (175)
T ss_dssp TCTTHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHhh
Confidence 999999999999998865443
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.4e-36 Score=202.93 Aligned_cols=165 Identities=30% Similarity=0.493 Sum_probs=143.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
.+||+++|++|||||||+++|..+.+...+.+|.+..+ ...+..++..+.+.+||++|++.+..++..++..+|++++|
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence 58999999999999999999999999998999887654 45778899999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
||++++.++..+...|...........|+++++||+|+.+... .+.+..++++++++..+ ++++++||++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~---------~~~v~~~~~~~~~~~~~-~~~~e~Sak~ 152 (170)
T d1ek0a_ 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGG---------ERKVAREEGEKLAEEKG-LLFFETSAKT 152 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSC---------CCCSCHHHHHHHHHHHT-CEEEECCTTT
T ss_pred EeCCcccchhhhhhhhhhhccccccccceeeeecccccccccc---------hhhhhHHHHHHHHHHcC-CEEEEecCCC
Confidence 9999999999988634344444566899999999999865422 15578889999999998 6999999999
Q ss_pred cccHHHHHHHHHHHHc
Q psy10443 165 QRGLRQVFDEAVRAVL 180 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~ 180 (195)
|.|++++|..|++.+.
T Consensus 153 g~gV~e~F~~i~~~i~ 168 (170)
T d1ek0a_ 153 GENVNDVFLGIGEKIP 168 (170)
T ss_dssp CTTHHHHHHHHHTTSC
T ss_pred CcCHHHHHHHHHHHhc
Confidence 9999999999987654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.4e-36 Score=200.54 Aligned_cols=161 Identities=25% Similarity=0.540 Sum_probs=135.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||+++|+.+.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+..++..++++++++++|+
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVY 82 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence 7999999999999999999999999888888887665 467778899999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|++++++++.+...+...........|++++++|.|+... ....++++.++..++ +++++|||++|
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~-------------~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 148 (166)
T d1g16a_ 83 DITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR-------------VVTADQGEALAKELG-IPFIESSAKND 148 (166)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC-------------CSCHHHHHHHHHHHT-CCEEECBTTTT
T ss_pred ECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhh-------------hhhHHHHHHHHHhcC-CeEEEECCCCC
Confidence 9999999999876344444444567899999999998653 366788999999998 79999999999
Q ss_pred ccHHHHHHHHHHHHcC
Q psy10443 166 RGLRQVFDEAVRAVLR 181 (195)
Q Consensus 166 ~~v~~~~~~l~~~~~~ 181 (195)
+|++++|++|++.+.+
T Consensus 149 ~~v~e~f~~l~~~i~~ 164 (166)
T d1g16a_ 149 DNVNEIFFTLAKLIQE 164 (166)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988754
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-35 Score=200.47 Aligned_cols=166 Identities=21% Similarity=0.287 Sum_probs=139.1
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.+.+||+++|++|||||||+++|.++.+. .+.++....+...+.+++..+.+.+||++|+..+. +++.+|++|
T Consensus 2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~i 75 (175)
T d2bmja1 2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVI 75 (175)
T ss_dssp CCCEEEEEEECCTTTTHHHHHHHHHHSCCC-CCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEE
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHhCCCC-CcCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeE
Confidence 467899999999999999999999999885 45566677777778899999999999999987653 678899999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
+|||+++++|++.+.. |...+... .+++|+++|+||.|+..... +.+..++++.++...+.++|+
T Consensus 76 lVfd~~~~~Sf~~~~~-~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~----------~~v~~~~~~~~~~~~~~~~~~ 144 (175)
T d2bmja1 76 FVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSP----------RVVGDARARALCADMKRCSYY 144 (175)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHCC--CCCCEEEEEEECTTCCSSSC----------CCSCHHHHHHHHHTSTTEEEE
T ss_pred EEeecccchhhhhhHH-HHHHHHHHhhcccCCccEEEEeeecCcchhhh----------cchhHHHHHHHHHHhCCCeEE
Confidence 9999999999999874 77766543 35689999999999754432 557788889998877768999
Q ss_pred EeccCCcccHHHHHHHHHHHHcCCCcc
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
+|||++|.|++++|..+++.+...+++
T Consensus 145 e~SAk~~~~v~~~F~~l~~~i~~~~~~ 171 (175)
T d2bmja1 145 ETCATYGLNVDRVFQEVAQKVVTLRKQ 171 (175)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999988765543
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.7e-35 Score=197.18 Aligned_cols=163 Identities=33% Similarity=0.558 Sum_probs=139.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
+-+||+|+|++|||||||+++|..+.+...+.+|..... ......++..+.+.+||++|+..+...+..++..++++++
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 84 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 84 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence 457999999999999999999999999888888876554 4566778899999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
++|.+++.++..+.. |+..+... .+++|+++|+||+|+.+ +.+..++++.++++.+.++++
T Consensus 85 ~~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-------------~~v~~~~~~~~~~~~~~~~~~ 150 (174)
T d1wmsa_ 85 TFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDISE-------------RQVSTEEAQAWCRDNGDYPYF 150 (174)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCSS-------------CSSCHHHHHHHHHHTTCCCEE
T ss_pred EEeeecccccchhhh-HHHHHHHHhccccCCCceEEEeccccchhh-------------ccCcHHHHHHHHHHcCCCeEE
Confidence 999999999998875 77666542 34799999999999854 447888999999998778999
Q ss_pred EeccCCcccHHHHHHHHHHHHcC
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
++||++|.|++++|.+|++.++.
T Consensus 151 e~Sak~~~gI~e~f~~l~~~il~ 173 (174)
T d1wmsa_ 151 ETSAKDATNVAAAFEEAVRRVLA 173 (174)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEcCCCCcCHHHHHHHHHHHHhc
Confidence 99999999999999999998753
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.9e-36 Score=205.99 Aligned_cols=163 Identities=31% Similarity=0.571 Sum_probs=138.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEe----------CCEEEEEEEEeCCCCccccccCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTV----------DGIPVSLGLWDTAGQEDYDRLRPLS 74 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~----------~~~~~~l~~~D~~G~~~~~~~~~~~ 74 (195)
-+||+++|++|||||||+++|+++.+...+.++....+ ...+.+ .+..+.+.+||++|++.+..++..+
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~ 84 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 84 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence 48999999999999999999999998888777765544 222222 2345789999999999999999999
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI 152 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
++++|++|+|||++++.+++.+.. |...+... .+..|+++|+||+|+... +.+..+++.++++.+
T Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~------------~~v~~~e~~~~~~~~ 151 (186)
T d2f7sa1 85 FRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQ------------REVNERQARELADKY 151 (186)
T ss_dssp HTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHT
T ss_pred HhcCCEEEEEEeccccccceeeee-ccchhhhhccCCCceEEEEeeeccchhh------------hcchHHHHHHHHHHc
Confidence 999999999999999999999884 77666543 457899999999999765 558888999999999
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+ ++++++||++|.|++++|++|++.+.++
T Consensus 152 ~-~~~~e~Sak~~~~i~e~f~~l~~~i~~k 180 (186)
T d2f7sa1 152 G-IPYFETSAATGQNVEKAVETLLDLIMKR 180 (186)
T ss_dssp T-CCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred C-CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 8 6899999999999999999999988643
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.2e-35 Score=197.85 Aligned_cols=162 Identities=27% Similarity=0.395 Sum_probs=132.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCC-Ccccce-eeccceeEEeCCEEEEEEEEeCCC---CccccccCCCCCCCccE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPG-EYVPTV-FDNYSAPFTVDGIPVSLGLWDTAG---QEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~-~~~~~~~~~~~~~~~~l~~~D~~G---~~~~~~~~~~~~~~~d~ 80 (195)
-+||+++|++|||||||+++|++..+.. ...+++ .+.+...+.+++..+.+.+||+++ ++++ ++..+++++|+
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~ 80 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA 80 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence 4899999999999999999999876542 223333 445566788899999999999764 5554 45678999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
+|+|||+++++++..+.. |...+... .+++|+++|+||+|+... +.+..++++.++..++ ++++
T Consensus 81 ~ilvfd~t~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~ 146 (172)
T d2g3ya1 81 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRC------------REVSVSEGRACAVVFD-CKFI 146 (172)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEE
T ss_pred eeeeecccccchhhhhhh-hhhhhhhccccCCceEEEEecccccccc------------ccccHHHHHHHHHHcC-CeEE
Confidence 999999999999999885 76665543 468999999999998765 5578888999999998 6999
Q ss_pred EeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
++||++|.|++++|..|++.+..++
T Consensus 147 e~Sak~g~~i~~~f~~l~~~i~~rr 171 (172)
T d2g3ya1 147 ETSAAVQHNVKELFEGIVRQVRLRR 171 (172)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred EEeCCCCcCHHHHHHHHHHHHHHcc
Confidence 9999999999999999999875443
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-34 Score=196.67 Aligned_cols=163 Identities=32% Similarity=0.580 Sum_probs=142.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
..+||+|+|++|||||||+++|.++.+..++.++..... ...+.+++..+.+.+||+||++++..++..++.++|++++
T Consensus 6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~ 85 (177)
T d1x3sa1 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 85 (177)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 468999999999999999999999998888777775544 4567788999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+|++++.++..+.. |...+... ....|+++++||.|... +.+..+++.++++.++ ++++++|
T Consensus 86 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~i~~~~nk~d~~~-------------~~v~~~~~~~~~~~~~-~~~~e~S 150 (177)
T d1x3sa1 86 VYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKEN-------------REVDRNEGLKFARKHS-MLFIEAS 150 (177)
T ss_dssp EEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSSS-------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEECCCccccccchh-hhhhhcccccccceeeEEEeecccccc-------------ccccHHHHHHHHHHCC-CEEEEEe
Confidence 999999999998885 77776654 35689999999999755 4477888999999998 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|+|++++|+++++.+.+.
T Consensus 151 a~tg~gv~e~f~~l~~~l~~~ 171 (177)
T d1x3sa1 151 AKTCDGVQCAFEELVEKIIQT 171 (177)
T ss_dssp TTTCTTHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHccC
Confidence 999999999999999988765
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.8e-34 Score=197.33 Aligned_cols=163 Identities=29% Similarity=0.556 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+|+|.+|||||||+++|+++.+..++.+|.+... .......+..+.+.+||++|+..+...+..++..++++++++
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 82 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 82 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence 7999999999999999999999999888888875544 456677888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh-----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH-----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
|.+++.++..+.. |+..+... ..++|+++|+||+|+.+. .+..++...++.....+++++|
T Consensus 83 d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~e~ 148 (184)
T d1vg8a_ 83 DVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLENR-------------QVATKRAQAWCYSKNNIPYFET 148 (184)
T ss_dssp ETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-------------CSCHHHHHHHHHHTTSCCEEEC
T ss_pred cccchhhhhcchh-hHHHHHHHhccccccCCCEEEEEEeeccccc-------------chhHHHHHHHHHHhcCCeEEEE
Confidence 9999999999874 87766543 236899999999998653 3666777788877766899999
Q ss_pred ccCCcccHHHHHHHHHHHHcCCC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
||++|.|++++|.+|++.+.+.+
T Consensus 149 Sak~~~gI~e~f~~l~~~i~~~~ 171 (184)
T d1vg8a_ 149 SAKEAINVEQAFQTIARNALKQE 171 (184)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhcc
Confidence 99999999999999999877644
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.2e-34 Score=191.37 Aligned_cols=158 Identities=31% Similarity=0.564 Sum_probs=135.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccc-cCCCCCCCccEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDR-LRPLSYPQTDVFL 82 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~-~~~~~~~~~d~~i 82 (195)
+-+||+++|++|||||||+++|..+.+...+.++.+... .....+....+.+.+||++|...+.. .+..+++++|++|
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 80 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence 458999999999999999999999999888888876555 45667888899999999999877654 4567899999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+|||+++++++..+.. |+..+... .+++|+++|+||+|+.+. +.++.++++++++.++ ++++++
T Consensus 81 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~pi~lvgnK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~ 146 (165)
T d1z06a1 81 FVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSA------------IQVPTDLAQKFADTHS-MPLFET 146 (165)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CCEEEC
T ss_pred EEEEeehhhhhhhhhh-hhHHHHhhccCCCCeEEEEeccccchhc------------cchhHHHHHHHHHHCC-CEEEEE
Confidence 9999999999999875 77766654 368999999999999776 4588889999999998 689999
Q ss_pred ccCC---cccHHHHHHHHH
Q psy10443 161 SALT---QRGLRQVFDEAV 176 (195)
Q Consensus 161 Sa~~---~~~v~~~~~~l~ 176 (195)
||++ ++|++++|.+|+
T Consensus 147 SAkt~~~~~~V~e~F~~lA 165 (165)
T d1z06a1 147 SAKNPNDNDHVEAIFMTLA 165 (165)
T ss_dssp CSSSGGGGSCHHHHHHHHC
T ss_pred ecccCCcCcCHHHHHHHhC
Confidence 9997 559999998873
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=1.8e-34 Score=193.79 Aligned_cols=162 Identities=15% Similarity=0.232 Sum_probs=124.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+++||+++|++|||||||+++|..+.+...+.||.+..+. ....+ .+.+.+||+||++.+...+..++..++++++|
T Consensus 1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 77 (164)
T d1zd9a1 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 77 (164)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee-eeeee--eEEEEEeeccccccccccccccccccchhhcc
Confidence 4789999999999999999999999988888888765443 23344 46777999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
||+++++++......|...+... .+++|+++|+||+|+........... .....++...+ ++++++||+
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~---------~~~~~~~~~~~-~~~~e~Sa~ 147 (164)
T d1zd9a1 78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIE---------KMNLSAIQDRE-ICCYSISCK 147 (164)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHH---------HTTGGGCCSSC-EEEEECCTT
T ss_pred cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHH---------HHHHHHHHhCC-CEEEEEeCc
Confidence 99999999998876444444443 46899999999999865422111100 00111112223 689999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRAV 179 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~ 179 (195)
+|+|++++|++|++.+
T Consensus 148 ~g~gv~e~~~~l~~~~ 163 (164)
T d1zd9a1 148 EKDNIDITLQWLIQHS 163 (164)
T ss_dssp TCTTHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHcc
Confidence 9999999999998753
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=6.6e-33 Score=186.30 Aligned_cols=159 Identities=18% Similarity=0.271 Sum_probs=122.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
|.+||+++|++|||||||+++|.+..+ ..+.||.+... ..+..++ +.+.+||+||++.++..+..+++.++++++|
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 76 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNI-KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 76 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEE-EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeee-eeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence 579999999999999999999998766 34555554332 2333444 6677999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHH-H-H--HcCCceeEE
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKL-A-N--KIRAVKYME 159 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~--~~~~~~~~~ 159 (195)
+|+++..++......|...+... ..++|+++|+||+|+..... .++.... . . ....+++++
T Consensus 77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 142 (165)
T d1ksha_ 77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--------------CNAIQEALELDSIRSHHWRIQG 142 (165)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHTTGGGCCSSCEEEEE
T ss_pred eecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccC--------------HHHHHHHHHhhhhhcCCCEEEE
Confidence 99999999998876666665543 46899999999999975422 1111111 1 1 112367899
Q ss_pred eccCCcccHHHHHHHHHHHHcC
Q psy10443 160 CSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
|||++|+|++++|++|.+.+.+
T Consensus 143 ~Sa~~g~gv~e~~~~l~~~i~~ 164 (165)
T d1ksha_ 143 CSAVTGEDLLPGIDWLLDDISS 164 (165)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHHHc
Confidence 9999999999999999988754
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=7.6e-34 Score=193.85 Aligned_cols=166 Identities=16% Similarity=0.222 Sum_probs=117.3
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
.+.+.+||+++|++|||||||+++|..+.+.. ..||.... ......+ .+.+.+||+||++.+...+..++.+++++
T Consensus 13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 88 (182)
T d1moza_ 13 GSNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFN-VETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAV 88 (182)
T ss_dssp TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCC-EEEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceE-EEEEeeC--CEEEEEEecccccccchhHHhhhccceeE
Confidence 35789999999999999999999998875532 22333222 2223334 46677999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
++|+|++++.++.+....|...+... ..+.|+++++||+|+............. ....+...+ +++++|
T Consensus 89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~---------~~~~~~~~~-~~~~e~ 158 (182)
T d1moza_ 89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKEL---------NLVELKDRS-WSIVAS 158 (182)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHT---------TTTTCCSSC-EEEEEE
T ss_pred EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHH---------HHHHHhhCC-CEEEEE
Confidence 99999999999998875444444433 4579999999999996542211110000 001112222 679999
Q ss_pred ccCCcccHHHHHHHHHHHHcC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
||++|+|++++|++|++.+.+
T Consensus 159 SA~~g~gv~e~~~~l~~~i~~ 179 (182)
T d1moza_ 159 SAIKGEGITEGLDWLIDVIKE 179 (182)
T ss_dssp BGGGTBTHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=100.00 E-value=4.1e-33 Score=188.72 Aligned_cols=163 Identities=18% Similarity=0.231 Sum_probs=119.7
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.+.+||+++|++|||||||+++|..+.+.. ..+|.... .. ......+.+.+||+||++.++..+..+++.+++++
T Consensus 9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~-~~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii 84 (173)
T d1e0sa_ 9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFN-VE--TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 84 (173)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEE-EE--EEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeee-EE--EeeccceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence 4788999999999999999999999876532 22222222 12 22233467779999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|+++.+++..+...|...+... ..+.|+++++||+|+......... ........+...+ +.++++|
T Consensus 85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i---------~~~~~~~~~~~~~-~~~~e~S 154 (173)
T d1e0sa_ 85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEI---------QEKLGLTRIRDRN-WYVQPSC 154 (173)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHH---------HHHTTGGGCCSSC-EEEEECB
T ss_pred EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHH---------HHHHHHHHHHhCC-CEEEEee
Confidence 9999999999999886555555543 467999999999999764221110 0000011111223 6789999
Q ss_pred cCCcccHHHHHHHHHHHH
Q psy10443 162 ALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~ 179 (195)
|++|+|++++|++|.+.+
T Consensus 155 A~tg~gv~e~~~~l~~~~ 172 (173)
T d1e0sa_ 155 ATSGDGLYEGLTWLTSNY 172 (173)
T ss_dssp TTTTBTHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHhc
Confidence 999999999999998754
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=2.6e-33 Score=190.23 Aligned_cols=163 Identities=18% Similarity=0.285 Sum_probs=118.8
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.+++||+++|++|||||||+++|.++.+... .++.+.. ....... .+.+.+||++|++.+...+..+++.+|+++
T Consensus 13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~~-~~~i~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 88 (176)
T d1fzqa_ 13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFN-IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (176)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETTEE-EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeeeee-EEEeccC--CeeEeEeeccccccchhHHHHHhhccceeE
Confidence 36789999999999999999999998876422 2222211 1223333 467789999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||++++.++..+...|....... ..++|+++++||+|+..........+.. ...++. ...++++++|
T Consensus 89 ~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~S 158 (176)
T d1fzqa_ 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGL---------NLHTIR-DRVWQIQSCS 158 (176)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHT---------TGGGCC-SSCEEEEECC
T ss_pred EeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHH---------HHHHHH-hcCCEEEEEe
Confidence 9999999999998876444444433 3579999999999997653211110000 000111 1236799999
Q ss_pred cCCcccHHHHHHHHHHHH
Q psy10443 162 ALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~ 179 (195)
|++|+|++++|++|++.+
T Consensus 159 A~tg~gv~e~~~~l~~~i 176 (176)
T d1fzqa_ 159 ALTGEGVQDGMNWVCKNV 176 (176)
T ss_dssp TTTCTTHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHhcC
Confidence 999999999999998753
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.97 E-value=1.4e-30 Score=173.72 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=119.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|||||||+++|+++.+...+..+. ......+...+.+.+||++|...+...+..++..++++++++|
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d 76 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG----FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSS----CCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcccccee----eEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence 589999999999999999999887754433322 2233445666788899999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
++++.++..+...+...+... ....|+++++||+|+........ +.......++...+ ++++++||++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~---------i~~~~~~~~~~~~~-~~~~~~SAktg 146 (160)
T d1r8sa_ 77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE---------ITDKLGLHSLRHRN-WYIQATCATSG 146 (160)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH---------HHHHTTGGGCSSCC-EEEEECBTTTT
T ss_pred ecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHH---------HHHHHHHHHHhhCC-CEEEEeECCCC
Confidence 999999998876444444433 35789999999999876532111 11111112222333 78999999999
Q ss_pred ccHHHHHHHHHHHH
Q psy10443 166 RGLRQVFDEAVRAV 179 (195)
Q Consensus 166 ~~v~~~~~~l~~~~ 179 (195)
+|++++|++|++.+
T Consensus 147 ~gi~e~~~~l~~~l 160 (160)
T d1r8sa_ 147 DGLYEGLDWLSNQL 160 (160)
T ss_dssp BTHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhcC
Confidence 99999999998764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=1.1e-27 Score=162.52 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=115.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccC--------CCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLR--------PLSY 75 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~--------~~~~ 75 (195)
.-.|+|+|.+|||||||+++|++.... .....++...........+.. +.+||+||........ ..++
T Consensus 5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~--~~~~DtpG~~~~~~~~~~~~~~~~~~~~ 82 (178)
T d1wf3a1 5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQ--IVFVDTPGLHKPMDALGEFMDQEVYEAL 82 (178)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEE--EEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeee--eeecccccccccccccchhccccccccc
Confidence 347999999999999999999987532 333444444444444555554 5599999975543222 3347
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
+++|++++|+|++++....+ ..|...++....+.|+++|+||+|+.... .+....+...++..
T Consensus 83 ~~ad~il~v~D~~~~~~~~~--~~i~~~l~~~~~~~piilv~NK~Dl~~~~---------------~~~~~~~~~~~~~~ 145 (178)
T d1wf3a1 83 ADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYP---------------EEAMKAYHELLPEA 145 (178)
T ss_dssp SSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSH---------------HHHHHHHHHTSTTS
T ss_pred ccccceeeeechhhhhcccc--cchhhheeccccchhhhhhhcccccccCH---------------HHHHHHHHhhcccC
Confidence 89999999999988755443 34667777777789999999999986642 23344555566667
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
.++++||++|.|+++++++|.+.+.+
T Consensus 146 ~~~~iSA~~~~gi~~L~~~i~~~lpe 171 (178)
T d1wf3a1 146 EPRMLSALDERQVAELKADLLALMPE 171 (178)
T ss_dssp EEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred ceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 88999999999999999999988754
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=6.2e-29 Score=170.86 Aligned_cols=170 Identities=15% Similarity=0.195 Sum_probs=118.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
|++||+++|+.|||||||+++|....+++.+.++ ..++...+.+++||++|++.+...+..+++.++++++|
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~~--------~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v 72 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVE--------THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC 72 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSEEE--------EEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCccEEE--------EEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence 5799999999999999999999887665433222 22333446778999999999999999999999999999
Q ss_pred EeCCChhcHH----------HHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCC---CccHHHHHH-HH
Q psy10443 85 YSVVSPSSFD----------NVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLS---PVKREQGQK-LA 149 (195)
Q Consensus 85 ~d~~~~~s~~----------~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~ 149 (195)
+|+++.+++. +....|...+... ..+.|+++++||+|+..............+. .....+... +.
T Consensus 73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
T d1svsa1 73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ 152 (195)
T ss_dssp EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence 9999877653 2223455555543 4679999999999986543222211111111 111122111 11
Q ss_pred HHc---------CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 150 NKI---------RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 150 ~~~---------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
..+ ..+.+++|||+++.|++++|+.+.+.+.+.
T Consensus 153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~ 194 (195)
T d1svsa1 153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194 (195)
T ss_dssp HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence 111 235678899999999999999999887643
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.95 E-value=1.9e-28 Score=166.05 Aligned_cols=159 Identities=19% Similarity=0.312 Sum_probs=113.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.+++||+|+|.+|||||||++++.++.+... .++.. .........+ +.+.+||++|++.....+..++..+++++
T Consensus 12 ~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~-~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i 87 (177)
T d1zj6a1 12 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG-SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 87 (177)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSC-SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccc-eeEEEEeecc--eEEEEeccccccccccchhhhhccceeee
Confidence 46789999999999999999999999776421 12211 1122333333 56679999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH----HcCCcee
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN----KIRAVKY 157 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 157 (195)
+++|.++..++......+...... ...+.|+++|+||+|+..... .++...... ....+++
T Consensus 88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--------------~~~i~~~~~~~~~~~~~~~~ 153 (177)
T d1zj6a1 88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--------------VAEISQFLKLTSIKDHQWHI 153 (177)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--------------HHHHHHHHTGGGCCSSCEEE
T ss_pred eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--------------HHHHHHHHHHHhhHhcCCEE
Confidence 999999999988765433333322 346899999999999866532 122222111 1123689
Q ss_pred EEeccCCcccHHHHHHHHHHHH
Q psy10443 158 MECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
+++||++|+|+++++++|.+.+
T Consensus 154 ~~~Sa~tg~Gi~e~~~~L~~~l 175 (177)
T d1zj6a1 154 QACCALTGEGLCQGLEWMMSRL 175 (177)
T ss_dssp EECBTTTTBTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999876
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.95 E-value=1.9e-27 Score=159.67 Aligned_cols=165 Identities=16% Similarity=0.242 Sum_probs=120.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+++||+++|.+|||||||+++|+++.+... .++.... ......++ +.+.+||.+|.+.+...+...+..++++++
T Consensus 3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (169)
T d1upta_ 3 TREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFN-VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 78 (169)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEE-EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhCCCCcce-eccccee-eeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhh
Confidence 4679999999999999999999999887542 2232221 12223334 566699999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
++|+.+..+.......+....... ....|+++++||.|+........ +.......++.... ++++++||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~---------i~~~~~~~~~~~~~-~~~~~~SA 148 (169)
T d1upta_ 79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSE---------MANSLGLPALKDRK-WQIFKTSA 148 (169)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH---------HHHHHTGGGCTTSC-EEEEECCT
T ss_pred hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHH---------HHHHHHHHHHhcCC-CEEEEEeC
Confidence 999999888887775444444433 46789999999999976532111 11111122233333 78999999
Q ss_pred CCcccHHHHHHHHHHHHcCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~ 182 (195)
++|.|++++|++|.+.+.++
T Consensus 149 ~~g~gv~e~~~~l~~~l~~k 168 (169)
T d1upta_ 149 TKGTGLDEAMEWLVETLKSR 168 (169)
T ss_dssp TTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999987543
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=5.3e-28 Score=166.75 Aligned_cols=173 Identities=16% Similarity=0.163 Sum_probs=125.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
|++||+++|++|||||||+++|..+.+ ++.||.+..+. .+....+.+++||++|++.++..|..+++.+++++++
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~ 75 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEY---PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL 75 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEE---EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEE---EEeccceeeeeccccccccccccccccccccceeeEe
Confidence 579999999999999999999998876 35677765432 3344557788999999999999999999999999999
Q ss_pred EeCCChhc----------HHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhh----cCCCCccHHHHHHHH
Q psy10443 85 YSVVSPSS----------FDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSE----QNLSPVKREQGQKLA 149 (195)
Q Consensus 85 ~d~~~~~s----------~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 149 (195)
+|.++..+ +.+....|...+... ..+.|+++++||+|+............ ......+......+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (200)
T d2bcjq2 76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI 155 (200)
T ss_dssp EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence 99987643 333344577777654 478999999999998754432221111 111122233333322
Q ss_pred HH---------cCCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 150 NK---------IRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 150 ~~---------~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.. ...+.+++|||++|.|++++|+.+.+.+.+.
T Consensus 156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~ 197 (200)
T d2bcjq2 156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 197 (200)
T ss_dssp HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence 21 1225578999999999999999999888654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=3.3e-26 Score=152.63 Aligned_cols=150 Identities=19% Similarity=0.261 Sum_probs=110.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc--------cCCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR--------LRPLSYP 76 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~--------~~~~~~~ 76 (195)
+||+++|.+|||||||+++|++.... .....++.......+...+..+ .+||+||...... ....++.
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL--HIIDTAGLREASDEVERIGIERAWQEIE 79 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEE--EEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCcee--eeccccccccccccchhHHHHHHHHHHH
Confidence 79999999999999999999986542 2333344444445556666554 4999999654431 1234467
Q ss_pred CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 77 QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
.+|++++++|..+..+..... .|...+.....+.|+++|+||+|+..... .. .+.+..+
T Consensus 80 ~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~iilv~NK~Dl~~~~~------------~~--------~~~~~~~ 138 (161)
T d2gj8a1 80 QADRVLFMVDGTTTDAVDPAE-IWPEFIARLPAKLPITVVRNKADITGETL------------GM--------SEVNGHA 138 (161)
T ss_dssp TCSEEEEEEETTTCCCCSHHH-HCHHHHHHSCTTCCEEEEEECHHHHCCCC------------EE--------EEETTEE
T ss_pred hccccceeeccccccchhhhh-hhhhhhhhcccccceeeccchhhhhhhHH------------HH--------HHhCCCc
Confidence 899999999999888776665 37677776667899999999999865421 10 1234478
Q ss_pred eEEeccCCcccHHHHHHHHHHHH
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
++++||++|.|+++++++|.+.+
T Consensus 139 ~~~iSAk~~~gi~~L~~~l~~~l 161 (161)
T d2gj8a1 139 LIRLSARTGEGVDVLRNHLKQSM 161 (161)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 99999999999999999998864
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=2e-25 Score=149.02 Aligned_cols=163 Identities=20% Similarity=0.287 Sum_probs=113.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
||+++|++|||||||+++|.++.+. ...||..... . ......+...+||++|...+...+..++..++++++++|.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS-E--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA 77 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEE-E--EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeE-E--EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence 7999999999999999999998774 3444443222 2 2223334566999999999999999999999999999999
Q ss_pred CChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcc
Q psy10443 88 VSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR 166 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (195)
++..++......|...... ...+.|+++++||.|+.................... ..+......++++++||++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~SA~tg~ 154 (166)
T d2qtvb1 78 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTG---SQRIEGQRPVEVFMCSVVMRN 154 (166)
T ss_dssp TCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC------CCSSCCEEEEEEBTTTTB
T ss_pred cchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhH---HHhhcccCCCEEEEeeCCCCC
Confidence 9999988776534333332 245789999999999876432222111111111100 011111223679999999999
Q ss_pred cHHHHHHHHHH
Q psy10443 167 GLRQVFDEAVR 177 (195)
Q Consensus 167 ~v~~~~~~l~~ 177 (195)
|++++|++|.+
T Consensus 155 Gv~e~~~~l~~ 165 (166)
T d2qtvb1 155 GYLEAFQWLSQ 165 (166)
T ss_dssp SHHHHHHHHTT
T ss_pred CHHHHHHHHhC
Confidence 99999999875
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.93 E-value=5.7e-25 Score=149.58 Aligned_cols=172 Identities=21% Similarity=0.281 Sum_probs=112.5
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.++..||+++|++|||||||+++|+++.+... .++.... .....+++.. +.+||+.|+..+...+..+++..++++
T Consensus 10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (186)
T d1f6ba_ 10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPT-SEELTIAGMT--FTTFDLGGHIQARRVWKNYLPAINGIV 85 (186)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETTEE--EEEEEECC----CCGGGGGGGGCSEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccc-eeEEEecccc--cccccccchhhhhhHHhhhhcccceee
Confidence 36889999999999999999999999876432 2333222 2334556654 459999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCC---CCccHHHHHHHHHHcCCceeE
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNL---SPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 158 (195)
+++|+++..........+...... ...+.|+++++||.|+............... ............. ...++++
T Consensus 86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 164 (186)
T d1f6ba_ 86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELN-ARPLEVF 164 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCC-SCCEEEE
T ss_pred eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhh-cCCCEEE
Confidence 999999998888776544444432 3468999999999998654322211111000 0000000000011 1226799
Q ss_pred EeccCCcccHHHHHHHHHHHH
Q psy10443 159 ECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
++||++|+|++++|+||++.+
T Consensus 165 ~~SA~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 165 MCSVLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp ECBTTTTBSHHHHHHHHHTTC
T ss_pred EEeCCCCCCHHHHHHHHHHhh
Confidence 999999999999999998754
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=1.2e-25 Score=152.59 Aligned_cols=161 Identities=17% Similarity=0.105 Sum_probs=101.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccC-------CCCCCCccE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLR-------PLSYPQTDV 80 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~-------~~~~~~~d~ 80 (195)
+|+++|.+|||||||+|+|++........+..................+.+||+||........ ...+..+++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 5899999999999999999976432111111111112222233333456799999954322111 123567899
Q ss_pred EEEEEeCCChh--cHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 81 FLICYSVVSPS--SFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 81 ~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
+++++|+.... ++.... .|+........+.|+++|+||+|+..... .++..+.....+ .+++
T Consensus 83 ~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~p~iiv~NK~D~~~~~~--------------~~~~~~~~~~~~-~~~~ 146 (180)
T d1udxa2 83 LLYVLDAADEPLKTLETLR-KEVGAYDPALLRRPSLVALNKVDLLEEEA--------------VKALADALAREG-LAVL 146 (180)
T ss_dssp EEEEEETTSCHHHHHHHHH-HHHHHHCHHHHHSCEEEEEECCTTSCHHH--------------HHHHHHHHHTTT-SCEE
T ss_pred hhhhcccccccccchhhhh-hhhhccccccchhhhhhhhhhhhhhhHHH--------------HHHHHHHHHhcC-CeEE
Confidence 99999986542 222222 23333322233689999999999977542 122333344444 7899
Q ss_pred EeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
.+||++|+|++++++.|.+.+....+
T Consensus 147 ~iSA~tg~gid~L~~~i~~~l~~~~~ 172 (180)
T d1udxa2 147 PVSALTGAGLPALKEALHALVRSTPP 172 (180)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhhcCC
Confidence 99999999999999999998865433
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=6.1e-26 Score=156.44 Aligned_cols=171 Identities=19% Similarity=0.217 Sum_probs=109.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+.+||+++|++|||||||+++|. +...+.||.+... ..+... .+.+.+||++|++.++..+..+++.+++++++
T Consensus 1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~-~~~~~~--~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~ 74 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE-YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFL 74 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE-EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE-EEEeee--eeeeeeecccceeeecccccccccccceeEEE
Confidence 46899999999999999999994 4456677776432 234444 45667999999999999999999999999999
Q ss_pred EeCCChhc----------HHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhh----cCCCCccHHHHHHHH
Q psy10443 85 YSVVSPSS----------FDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSE----QNLSPVKREQGQKLA 149 (195)
Q Consensus 85 ~d~~~~~s----------~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 149 (195)
+|.++..+ +......|...+... ..++|+++++||+|+.+.......... ..-.....+.+.++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 154 (200)
T d1zcba2 75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL 154 (200)
T ss_dssp EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence 99987533 333333234444432 468999999999998654322111111 101112223333322
Q ss_pred HH-c---------CCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 150 NK-I---------RAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 150 ~~-~---------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
.. + ..+.+++|||+++.|++++|+.+.+.+.+
T Consensus 155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~ 196 (200)
T d1zcba2 155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 196 (200)
T ss_dssp HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence 21 1 12456789999999999999999887754
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.92 E-value=1.1e-25 Score=152.57 Aligned_cols=164 Identities=18% Similarity=0.112 Sum_probs=110.1
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceee--------ccceeEEeCCEEEEEEEEeCCCCccccccCCCC
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFD--------NYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLS 74 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~--------~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~ 74 (195)
..|.++|+++|.+|+|||||+++|++.......+.+... ........++. .+.++|+||+..+.......
T Consensus 2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~ 79 (179)
T d1wb1a4 2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENY--RITLVDAPGHADLIRAVVSA 79 (179)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTE--EEEECCCSSHHHHHHHHHHH
T ss_pred CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCc--cccccccccccccccchhhh
Confidence 467899999999999999999999974322111111111 11122333443 45599999999988888888
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH---
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK--- 151 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 151 (195)
+..+|++++|+|+++....+... ....+... ++|+++|+||+|+........ ..+..+.+...
T Consensus 80 l~~~d~~ilv~d~~~g~~~~~~~--~~~~~~~~--~~p~iiv~NKiD~~~~~~~~~----------~~~~~~~~~~~~~~ 145 (179)
T d1wb1a4 80 ADIIDLALIVVDAKEGPKTQTGE--HMLILDHF--NIPIIVVITKSDNAGTEEIKR----------TEMIMKSILQSTHN 145 (179)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCBCEEEECTTSSCHHHHHH----------HHHHHHHHHHHSSS
T ss_pred hhhccccccccccccccchhhhh--hhhhhhhc--CCcceeccccccccCHHHHHH----------HHHHHHHHHHHhhc
Confidence 89999999999999865544332 22334333 789999999999987643211 11122222222
Q ss_pred cCCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
....+++++||++|+|++++++.|.+.+.+.
T Consensus 146 ~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~~ 176 (179)
T d1wb1a4 146 LKNSSIIPISAKTGFGVDELKNLIITTLNNA 176 (179)
T ss_dssp GGGCCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred CCCCeEEEEEccCCcCHHHHHHHHHhcCCcc
Confidence 2235789999999999999999999987654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=1.8e-24 Score=145.52 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=101.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc---------ccCCCCCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD---------RLRPLSYP 76 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~---------~~~~~~~~ 76 (195)
.|+++|.+|||||||+++|++.... ....+++...........+. .+.+||++|..... .....++.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 79 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 79 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeecccccccccccc--ccccccccceeeeeccccccccccccccccc
Confidence 5899999999999999999986532 33344444444444444554 45599999842221 12223456
Q ss_pred CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 77 QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
.+|++++++|.++....... .+...++.. +.|+++|+||+|+..... .+...++ ...+..+
T Consensus 80 ~ad~i~~~~~~~~~~~~~~~--~~~~~l~~~--~~pviiv~NK~Dl~~~~~--------------~~~~~~~-~~~~~~~ 140 (171)
T d1mkya1 80 EADLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLREFE--------------REVKPEL-YSLGFGE 140 (171)
T ss_dssp TCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHHHH--------------HHTHHHH-GGGSSCS
T ss_pred cCcEEEEeeccccccccccc--ccccccccc--cccccccchhhhhhhhhh--------------hHHHHHH-HhcCCCC
Confidence 89999999998876655443 356666655 789999999999875422 1111222 2234456
Q ss_pred eEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++++||++|.|+++++++|.+.+.++..
T Consensus 141 ~i~iSAk~g~gid~L~~~i~~~l~e~~~ 168 (171)
T d1mkya1 141 PIPVSAEHNINLDTMLETIIKKLEEKGL 168 (171)
T ss_dssp CEECBTTTTBSHHHHHHHHHHHHHHTTC
T ss_pred eEEEecCCCCCHHHHHHHHHHhCCCCCC
Confidence 7999999999999999999998876543
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=1.9e-23 Score=142.29 Aligned_cols=158 Identities=20% Similarity=0.185 Sum_probs=103.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCC---------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPL--------- 73 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~--------- 73 (195)
..+||+++|.+|||||||+++|++... ......++.......+..++..+. ++|+||.......+..
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~d~~g~~~~~~~~~~~~~~~~~~~ 84 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYV--FVDTAGLRRKSRVEPRTVEKYSNYR 84 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEE--ESSCSCC-----------CCSCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceee--eeccCCccccccccccccccchhHH
Confidence 469999999999999999999998653 244455555555556677776655 9999996544322222
Q ss_pred ---CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH-HHH
Q psy10443 74 ---SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ-KLA 149 (195)
Q Consensus 74 ---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 149 (195)
.++.+|++++|+|++.+...+.. .+...+... +.|+++++||+|+..... ....+.. .+.
T Consensus 85 ~~~~~~~~dvii~v~d~~~~~~~~~~--~~~~~~~~~--~~~~i~v~nK~D~~~~~~------------~~~~~~~~~~~ 148 (186)
T d1mkya2 85 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVHRE------------KRYDEFTKLFR 148 (186)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTTGG------------GCHHHHHHHHH
T ss_pred HHHHHhcCCEEEEeecccccchhhHH--HHHHHHHHc--CCceeeeccchhhhcchh------------hhhhhHHHHHH
Confidence 23468999999999876554432 355555554 789999999999875532 1112222 122
Q ss_pred ---HHcCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 150 ---NKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 150 ---~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
...+..+++++||++|.|++++++.|.+.+.
T Consensus 149 ~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~ 182 (186)
T d1mkya2 149 EKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA 182 (186)
T ss_dssp HHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2234467999999999999999999977654
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=1.6e-23 Score=139.27 Aligned_cols=147 Identities=22% Similarity=0.276 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc-c--------CCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR-L--------RPLSY 75 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-~--------~~~~~ 75 (195)
+||+++|.+|||||||+++|++... ......++...........+.. +.+||+||...... . ....+
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~ 78 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETNDLVERLGIERTLQEI 78 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCee--EEeccccccccCCccHHHHHHHHHHHHHH
Confidence 6999999999999999999998643 2334444444455566667655 45999999432211 1 11124
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
..+|++++|+|++++...+... +...+ ...++++++||.|+.... ..++..... ....
T Consensus 79 ~~ad~ii~v~d~~~~~~~~~~~--~~~~~----~~~~~i~~~~k~d~~~~~--------------~~~~~~~~~--~~~~ 136 (160)
T d1xzpa2 79 EKADIVLFVLDASSPLDEEDRK--ILERI----KNKRYLVVINKVDVVEKI--------------NEEEIKNKL--GTDR 136 (160)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH--HHHHH----TTSSEEEEEEECSSCCCC--------------CHHHHHHHH--TCST
T ss_pred HhCCEEEEEEeCCCCcchhhhh--hhhhc----ccccceeeeeeccccchh--------------hhHHHHHHh--CCCC
Confidence 5789999999999987765543 22222 357899999999997752 222222211 1225
Q ss_pred eeEEeccCCcccHHHHHHHHHH
Q psy10443 156 KYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
+++++||++|+|+++++++|.+
T Consensus 137 ~~~~vSA~~g~gi~~L~~~I~k 158 (160)
T d1xzpa2 137 HMVKISALKGEGLEKLEESIYR 158 (160)
T ss_dssp TEEEEEGGGTCCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 7899999999999999999876
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.90 E-value=1.4e-23 Score=147.03 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=104.4
Q ss_pred EEEEcCCCCchHHHHHHhhcCCCCCCcccce-------ee----------ccceeEEeCCEEEEEEEEeCCCCccccccC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-------FD----------NYSAPFTVDGIPVSLGLWDTAGQEDYDRLR 71 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~-------~~----------~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~ 71 (195)
|+|+|.+++|||||+++|++........+.. .. .......++.....+.++|||||..|....
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~ 87 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR 87 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence 9999999999999999998742111000000 00 000011122223356699999999999888
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhh---hhcCCCCc-----cHH
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLL---SEQNLSPV-----KRE 143 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~---~~~~~~~~-----~~~ 143 (195)
...+..+|++|+|+|+.+.-..+.. ..+..+... ++|+++++||+|+.......... ........ ...
T Consensus 88 ~~~~~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 163 (227)
T d1g7sa4 88 KRGGALADLAILIVDINEGFKPQTQ--EALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT 163 (227)
T ss_dssp CSSSBSCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred hhcccccceEEEEEecccCcccchh--HHHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence 8899999999999999876444433 244445444 78999999999987543211100 00000000 000
Q ss_pred HHHHHHHH-----------------cCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 144 QGQKLANK-----------------IRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 144 ~~~~~~~~-----------------~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
...+.... .+..+++++||++|.|++++++.|.....+.-
T Consensus 164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~ 220 (227)
T d1g7sa4 164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (227)
T ss_dssp HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence 11111110 12257899999999999999999888765433
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.89 E-value=9.6e-23 Score=139.09 Aligned_cols=164 Identities=12% Similarity=0.065 Sum_probs=108.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC-----C-CCCC-----------cccceeeccceeEEeCCEEEEEEEEeCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD-----S-FPGE-----------YVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~-----~-~~~~-----------~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~ 66 (195)
++.+||+++|..++|||||+++|++. . -... ....+.+. ....+......+.++|+||+..
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~--~~~~~~~~~~~~~~iDtPGh~~ 78 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA--AHVEYSTAARHYAHTDCPGHAD 78 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC--EEEEEECSSCEEEEEECSSHHH
T ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCc--ceEEEEeceeeEEeecCcchHH
Confidence 35699999999999999999999751 0 0000 00001111 1122223334566999999999
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ 146 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (195)
|.......+..+|++++|+|+.+...-+... .+..+... ...|+++++||+|+........ ....++.
T Consensus 79 f~~~~~~~~~~aD~allVVda~~G~~~QT~~--~~~~a~~~-~~~~iIv~iNK~D~~~~~~~~~---------~i~~~i~ 146 (196)
T d1d2ea3 79 YVKNMITGTAPLDGCILVVAANDGPMPQTRE--HLLLARQI-GVEHVVVYVNKADAVQDSEMVE---------LVELEIR 146 (196)
T ss_dssp HHHHHHHTSSCCSEEEEEEETTTCSCHHHHH--HHHHHHHT-TCCCEEEEEECGGGCSCHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHhhcCeEEEEEEcCCCCchhHHH--HHHHHHHh-cCCcEEEEEecccccccHHHHH---------HHHHHHH
Confidence 9888888889999999999999865544432 22333222 2357899999999976543211 1123455
Q ss_pred HHHHHcCC----ceeEEeccCCc----------ccHHHHHHHHHHHHcC
Q psy10443 147 KLANKIRA----VKYMECSALTQ----------RGLRQVFDEAVRAVLR 181 (195)
Q Consensus 147 ~~~~~~~~----~~~~~~Sa~~~----------~~v~~~~~~l~~~~~~ 181 (195)
.+...++. ++++.+||++| .|+.++++.|.+.++.
T Consensus 147 ~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP~ 195 (196)
T d1d2ea3 147 ELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (196)
T ss_dssp HHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCCC
Confidence 55555543 67999999998 5999999998887654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.89 E-value=3.7e-23 Score=141.81 Aligned_cols=167 Identities=14% Similarity=0.087 Sum_probs=107.8
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcc----ccee-eccc----------------e----eEEeCCEEEEE
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYV----PTVF-DNYS----------------A----PFTVDGIPVSL 56 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~----~t~~-~~~~----------------~----~~~~~~~~~~l 56 (195)
|.++.+||+++|..++|||||+++|++........ ..+. ..+. . ..........+
T Consensus 1 ~~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (195)
T d1kk1a3 1 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 80 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred CCCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeE
Confidence 45778999999999999999999998642111000 0000 0000 0 00011223567
Q ss_pred EEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcC
Q psy10443 57 GLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQN 136 (195)
Q Consensus 57 ~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~ 136 (195)
.++|+||+..|.......+..+|++++|+|+.+....+...+ .+..+... ...+++++.||+|+........
T Consensus 81 ~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e-~~~~~~~~-~~~~iiv~inK~D~~d~~~~~~------ 152 (195)
T d1kk1a3 81 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE-HLMALQII-GQKNIIIAQNKIELVDKEKALE------ 152 (195)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHH-TCCCEEEEEECGGGSCHHHHHH------
T ss_pred eeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHH-HHHHHHHh-cCccceeeeecccchhhHHHHH------
Confidence 799999999998888888889999999999987643233222 22333332 1245788899999976543211
Q ss_pred CCCccHHHHHHHHHHc--CCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 137 LSPVKREQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
..+...++...+ ..++++++||++|+|++++++.+.+.++
T Consensus 153 ----~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 153 ----NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp ----HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ----HHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence 122333444333 2367999999999999999999988764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.89 E-value=1.2e-22 Score=140.58 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=85.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc-ccCCCCCCCccEEEEEEe
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD-RLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~-~~~~~~~~~~d~~i~v~d 86 (195)
+|+++|++|||||||+++|+++.+...+ +|...........++..+.+.+||++|++.+. ..+..++..++++++|+|
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D 80 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD 80 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence 6999999999999999999998775433 34433322222224556788899999998875 456778899999999999
Q ss_pred CCChhcH-HHHHHhhHHHHhh---hCCCCcEEEEeeCCCcccch
Q psy10443 87 VVSPSSF-DNVTSKWYPELKH---HCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 87 ~~~~~s~-~~~~~~~~~~~~~---~~~~~p~vvv~nK~D~~~~~ 126 (195)
+++..+. .+....+...+.. ...++|++|++||+|+....
T Consensus 81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~ 124 (207)
T d2fh5b1 81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 124 (207)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence 9987664 3433334344432 23568999999999997543
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.89 E-value=1e-22 Score=140.60 Aligned_cols=167 Identities=16% Similarity=0.126 Sum_probs=106.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCC---c-------ccceeecc--------------------ceeEEeCCEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGE---Y-------VPTVFDNY--------------------SAPFTVDGIP 53 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~---~-------~~t~~~~~--------------------~~~~~~~~~~ 53 (195)
++.+||+++|+.++|||||+++|++...... . ........ ..........
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 4569999999999999999999986311000 0 00000000 0000001122
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
..+.+.|+|||..|.......+..+|++|+|+|+.+.-.-....+.| ..+... .-.|++|++||+|+........
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~-~~~~~~-~i~~iIV~vNK~Dl~~~~~~~~--- 160 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHF-VALGII-GVKNLIIVQNKVDVVSKEEALS--- 160 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHH-HHHHHT-TCCCEEEEEECGGGSCHHHHHH---
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHH-HHHHHc-CCceeeeccccCCCccchHHHH---
Confidence 45779999999999887788888999999999998753112222222 223222 1348899999999987653222
Q ss_pred hcCCCCccHHHHHHHHHHc--CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 134 EQNLSPVKREQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.......+.... ..++++++||++|.|++++++.|.+.+..+
T Consensus 161 -------~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~P 204 (205)
T d2qn6a3 161 -------QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 204 (205)
T ss_dssp -------HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred -------HHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCCC
Confidence 112233333322 236899999999999999999999887754
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.89 E-value=1.1e-22 Score=141.97 Aligned_cols=171 Identities=15% Similarity=0.178 Sum_probs=117.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+.+||+++|++|||||||+++|..+.+ .||.+.. ...+.+++ +.+++||++|++.++..|..+++++++++++
T Consensus 5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~-~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v 77 (221)
T d1azta2 5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIF-ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFV 77 (221)
T ss_dssp HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCE-EEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeE-EEEEEECc--EEEEEEecCccceeccchhhhcccccceEEE
Confidence 568999999999999999999976543 4565533 23345555 5677999999999999999999999999999
Q ss_pred EeCCChh----------cHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhh---------hhhhcCC-------
Q psy10443 85 YSVVSPS----------SFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLN---------LLSEQNL------- 137 (195)
Q Consensus 85 ~d~~~~~----------s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~---------~~~~~~~------- 137 (195)
+|.++.+ ...+....|...+... ..++|++|++||+|+.+...... .......
T Consensus 78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~ 157 (221)
T d1azta2 78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPE 157 (221)
T ss_dssp EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCC
T ss_pred EEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccccc
Confidence 9998642 3344444455556553 46899999999999976543211 0110000
Q ss_pred --CCccHHHHHH-----HHHHc-------CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 138 --SPVKREQGQK-----LANKI-------RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 138 --~~~~~~~~~~-----~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
......++.. |.+-. ..+.++.|||.++.+++.+|+.+.+.+.+.
T Consensus 158 ~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~ 216 (221)
T d1azta2 158 PGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM 216 (221)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence 0011122222 22111 124467899999999999999988777643
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.88 E-value=9.7e-23 Score=138.44 Aligned_cols=151 Identities=14% Similarity=0.121 Sum_probs=94.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCC-cccceeeccceeEEeCCEEEEEEEEeCCCCcccc---------------ccC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGE-YVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD---------------RLR 71 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~---------------~~~ 71 (195)
.|+++|.+|||||||+|+|++...... +..++... ..+...+ +.+||+||..... ...
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~ 75 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 75 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--ccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence 589999999999999999998765322 22233221 1122222 3489999942211 112
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHH---------HhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccH
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVT---------SKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR 142 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~---------~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~ 142 (195)
...++.+|++++|+|++.+....... ..+...+... ++|+++|+||+|+.+....
T Consensus 76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~p~iiv~NK~D~~~~~~~-------------- 139 (184)
T d2cxxa1 76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNVQE-------------- 139 (184)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCHHH--------------
T ss_pred hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc--CCCEEEEEeeeehhhhHHH--------------
Confidence 23456789999999987543322211 0123334333 7899999999998765321
Q ss_pred HHHHHHHHHcC------CceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 143 EQGQKLANKIR------AVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 143 ~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
....+...+. ...++++||++|.|+++++++|.+.+.+
T Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e 183 (184)
T d2cxxa1 140 -VINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 183 (184)
T ss_dssp -HHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence 1111111111 1347899999999999999999988764
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=1.3e-22 Score=139.08 Aligned_cols=156 Identities=16% Similarity=0.136 Sum_probs=93.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc-------------ccCCCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD-------------RLRPLS 74 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~-------------~~~~~~ 74 (195)
+|+|+|.+|||||||+++|++........+............ ....+.+.|++|-.... ......
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--INDELHFVDVPGYGFAKVSKSEREAWGRMIETYITT 102 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--ETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccc--ccccceEEEEEeeccccccccccchhhhHHhhhhcc
Confidence 899999999999999999997542111111111111111111 11223366776632211 112234
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
+..++++++++|++++...++. .++..+... ++|+++|+||+|+........ ..+...+.....+.
T Consensus 103 ~~~~~~vi~viD~~~~~~~~~~--~~~~~l~~~--~~piivv~NK~D~~~~~~~~~----------~~~~~~~~l~~~~~ 168 (195)
T d1svia_ 103 REELKAVVQIVDLRHAPSNDDV--QMYEFLKYY--GIPVIVIATKADKIPKGKWDK----------HAKVVRQTLNIDPE 168 (195)
T ss_dssp CTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGGHHH----------HHHHHHHHHTCCTT
T ss_pred ccchhhhhhhhhcccccccccc--ccccccccc--cCcceechhhccccCHHHHHH----------HHHHHHHHhcccCC
Confidence 5678999999999876543333 356666655 789999999999876532111 01112222222244
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
.+++.+||++|.|+++++++|.+.+
T Consensus 169 ~~~~~~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 169 DELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999998876
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.86 E-value=2.6e-22 Score=136.49 Aligned_cols=156 Identities=20% Similarity=0.223 Sum_probs=96.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEe-CCEEEEEEEEeCCCCccccccC----CC---CCCCc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTV-DGIPVSLGLWDTAGQEDYDRLR----PL---SYPQT 78 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~~----~~---~~~~~ 78 (195)
+|+++|.+|||||||+|+|++.... ..+.+++.........+ ++.. +.+||+||..+..... .. .+..+
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~ 80 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRS--FVMADLPGLIEGAHQGVGLGHQFLRHIERT 80 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCE--EEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcE--EEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence 6899999999999999999886532 23333333322222222 3444 4599999953222111 11 23457
Q ss_pred cEEEEEEeCCChhcHHHHHH--hh---HHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc-
Q psy10443 79 DVFLICYSVVSPSSFDNVTS--KW---YPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI- 152 (195)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~--~~---~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 152 (195)
+.++++++....+....... .+ .........++|+++|+||+|+..... ..+.+...+
T Consensus 81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~----------------~~~~~~~~~~ 144 (185)
T d1lnza2 81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE----------------NLEAFKEKLT 144 (185)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH----------------HHHHHHHHCC
T ss_pred hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHH----------------HHHHHHHHhc
Confidence 88888887765433222111 11 111112234689999999999876432 222333333
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
...+++.+||++|.|++++++.|.+.+.+
T Consensus 145 ~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~ 173 (185)
T d1lnza2 145 DDYPVFPISAVTREGLRELLFEVANQLEN 173 (185)
T ss_dssp SCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 23678999999999999999999998854
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=3e-20 Score=125.38 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=105.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCc---------cccccCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE---------DYDRLRPLS 74 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~---------~~~~~~~~~ 74 (195)
.-.|+++|.+|||||||+|+|++.... .....++..........+...+. .+|++|.. .........
T Consensus 5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (179)
T d1egaa1 5 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAI--YVDTPGLHMEEKRAINRLMNKAASSS 82 (179)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEE--EESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeE--eecCCCceecchhhhhhhhhhccccc
Confidence 346999999999999999999986532 22222333333444445555444 78888732 112334445
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
...+++++++.|.++....... +...+.. ...|.++++||.|...... ........+...++.
T Consensus 83 ~~~~~~~l~~~d~~~~~~~~~~---~~~~l~~--~~~~~i~v~~k~d~~~~~~------------~~~~~~~~~~~~~~~ 145 (179)
T d1egaa1 83 IGDVELVIFVVEGTRWTPDDEM---VLNKLRE--GKAPVILAVNKVDNVQEKA------------DLLPHLQFLASQMNF 145 (179)
T ss_dssp CCCEEEEEEEEETTCCCHHHHH---HHHHHHS--SSSCEEEEEESTTTCCCHH------------HHHHHHHHHHTTSCC
T ss_pred hhhcceeEEEEecCccchhHHH---HHHHhhh--ccCceeeeeeeeeccchhh------------hhhhHhhhhhhhcCC
Confidence 5678899999998764433322 2233333 2678999999999877643 223345556666777
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.+++++||++|.|++++++.|.+.+.+.
T Consensus 146 ~~~~~vSA~~g~gi~~L~~~i~~~lpe~ 173 (179)
T d1egaa1 146 LDIVPISAETGLNVDTIAAIVRKHLPEA 173 (179)
T ss_dssp SEEEECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred CCEEEEeCcCCCCHHHHHHHHHHhCCCC
Confidence 8899999999999999999999887543
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=3.1e-21 Score=132.60 Aligned_cols=147 Identities=17% Similarity=0.174 Sum_probs=94.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC--------CCCC----Ccc------cceeeccceeEEeCCEEEEEEEEeCCCCc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD--------SFPG----EYV------PTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~--------~~~~----~~~------~t~~~~~~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
++++||+++|..++|||||+++|+.. .... .+. ..+.+.....+..++. .+.|+|+||+.
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~--~i~iiDtPGh~ 78 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKR--HYSHVDCPGHA 78 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSC--EEEEEECCCSG
T ss_pred CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCe--EEEEEeCCCch
Confidence 35699999999999999999999641 0000 000 1111111223344555 45599999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
.|.......+..+|++|+|+|+.+....+... .+..+... ++| +++++||+|+....+... ...++
T Consensus 79 df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~--~~~~~~~~--gi~~iiv~iNK~D~~~~~~~~~---------~~~~~ 145 (204)
T d2c78a3 79 DYIKNMITGAAQMDGAILVVSAADGPMPQTRE--HILLARQV--GVPYIVVFMNKVDMVDDPELLD---------LVEME 145 (204)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHH--HHHHHHHT--TCCCEEEEEECGGGCCCHHHHH---------HHHHH
T ss_pred hhHHHHHHHHHHCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEEecccCCCHHHHH---------HHHHH
Confidence 99888888889999999999999876666543 33444443 666 677899999876432111 11233
Q ss_pred HHHHHHHcC----CceeEEeccCCc
Q psy10443 145 GQKLANKIR----AVKYMECSALTQ 165 (195)
Q Consensus 145 ~~~~~~~~~----~~~~~~~Sa~~~ 165 (195)
+..+...++ .++++..|+..+
T Consensus 146 i~~~l~~~~~~~~~i~~i~~sa~~~ 170 (204)
T d2c78a3 146 VRDLLNQYEFPGDEVPVIRGSALLA 170 (204)
T ss_dssp HHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred HHHHHHhcCCCcccceeeeeechhh
Confidence 444444332 256788887644
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.79 E-value=3.6e-19 Score=123.46 Aligned_cols=154 Identities=17% Similarity=0.101 Sum_probs=96.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC--CCCCC----------cccceee-----------------cc---ceeEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD--SFPGE----------YVPTVFD-----------------NY---SAPFTVDG 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~~----------~~~t~~~-----------------~~---~~~~~~~~ 51 (195)
+..+||+++|..++|||||+++|+.. .+... ...+..+ .. .....+..
T Consensus 7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 86 (222)
T d1zunb3 7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 86 (222)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence 45689999999999999999999641 11100 0000000 00 00111112
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhh
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLN 130 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~ 130 (195)
....+.++|+|||..|.......+..+|++++|+|+.+...-+... .+..+... ++| +++++||+|+........
T Consensus 87 ~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e--~~~~~~~~--gv~~iiv~vNK~D~~~~~~~~~ 162 (222)
T d1zunb3 87 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR--HSYIASLL--GIKHIVVAINKMDLNGFDERVF 162 (222)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCEEEEEEECTTTTTSCHHHH
T ss_pred cceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHH--HHHHHHHc--CCCEEEEEEEccccccccceeh
Confidence 2245669999999999888888889999999999998865554433 22333332 554 788899999976433111
Q ss_pred hhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHH
Q psy10443 131 LLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLR 169 (195)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~ 169 (195)
. ...++...+....+ .++++++||.+|+|+.
T Consensus 163 ~--------~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 163 E--------SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 197 (222)
T ss_dssp H--------HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred h--------hhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence 0 12234455555553 2578999999999883
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.8e-18 Score=117.20 Aligned_cols=161 Identities=12% Similarity=0.012 Sum_probs=86.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCC--cccceeeccceeEEeCCEEEEEEEEeCCCCcccc----------ccC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGE--YVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD----------RLR 71 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~----------~~~ 71 (195)
...++|+++|.+|||||||+|+|++...... ..+++...........+.. .+..++.++..... ...
T Consensus 14 ~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (188)
T d1puia_ 14 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKR-LVDLPGYGYAEVPEEMKRKWQRALGEY 92 (188)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEE-EEECCCCC------CCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccc-eeeeecccccchhhhhhhhhhhhhhhh
Confidence 4578999999999999999999998654221 1122222212222222222 21122222211111 111
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH-
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN- 150 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (195)
.........++.+.+........... +....... ..++++++||+|+........ ..+...+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~v~~k~D~~~~~~~~~----------~~~~~~~~l~~ 158 (188)
T d1puia_ 93 LEKRQSLQGLVVLMDIRHPLKDLDQQ--MIEWAVDS--NIAVLVLLTKADKLASGARKA----------QLNMVREAVLA 158 (188)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCHHHHHH----------HHHHHHHHHGG
T ss_pred hhhhhheeEEEEeecccccchhHHHH--HHHHhhhc--cccccchhhhhhccCHHHHHH----------HHHHHHHHHHh
Confidence 11233455666677766554443332 44444433 678999999999877643221 1112222222
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
..+..+++.+||++|.|++++++.|.+.+
T Consensus 159 ~~~~~~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 159 FNGDVQVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp GCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence 23446889999999999999999987654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=1.8e-17 Score=117.71 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=79.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC--CCCC---Ccccc-e-------------eeccceeEEeCCEEEEEEEEeCCCCcccc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD--SFPG---EYVPT-V-------------FDNYSAPFTVDGIPVSLGLWDTAGQEDYD 68 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~--~~~~---~~~~t-~-------------~~~~~~~~~~~~~~~~l~~~D~~G~~~~~ 68 (195)
||+++|+.++|||||+.+++.. .... -...+ . .......+.+++.. ++++||||+..|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~--~n~iDtPG~~dF~ 85 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHR--INIIDAPGHVDFT 85 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEE--EEEECCCSSSSCS
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeE--EEEecCCchhhhH
Confidence 7999999999999999998642 1110 00000 0 11111344556654 5599999999999
Q ss_pred ccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 69 RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
......++.+|++|+|+|+.+.-..+... .|.. .+.+ ++|.++++||+|....+
T Consensus 86 ~e~~~~l~~~D~avlVvda~~Gv~~~T~~-~w~~-a~~~--~lP~i~fINKmDr~~ad 139 (276)
T d2bv3a2 86 IEVERSMRVLDGAIVVFDSSQGVEPQSET-VWRQ-AEKY--KVPRIAFANKMDKTGAD 139 (276)
T ss_dssp TTHHHHHHHCCEEEEEEETTTSSCHHHHH-HHHH-HHTT--TCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHhhhheEEeccccCCcchhHHH-HHHH-HHHc--CCCEEEEEecccccccc
Confidence 98888999999999999999876655554 2544 3333 89999999999987543
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.74 E-value=1e-17 Score=117.83 Aligned_cols=160 Identities=15% Similarity=0.102 Sum_probs=84.0
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcC--CCCC------------------------------CcccceeeccceeEEe
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTD--SFPG------------------------------EYVPTVFDNYSAPFTV 49 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~------------------------------~~~~t~~~~~~~~~~~ 49 (195)
..++.++|+++|..++|||||+.+|+.. .+.. .....+.......+..
T Consensus 20 ~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~ 99 (245)
T d1r5ba3 20 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 99 (245)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc
Confidence 3456789999999999999999999431 1000 0000000000112223
Q ss_pred CCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHH------HHHHhhHHHHhhhCCCC-cEEEEeeCCCc
Q psy10443 50 DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFD------NVTSKWYPELKHHCPDA-PIILVGTKIDL 122 (195)
Q Consensus 50 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~-p~vvv~nK~D~ 122 (195)
++ ..+.+.|+|||..|..........+|++++|+|+.+..--+ ...+ .+..+... ++ ++++++||+|+
T Consensus 100 ~~--~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e-~l~l~~~~--~i~~iiv~iNKmD~ 174 (245)
T d1r5ba3 100 EH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTRE-HAVLARTQ--GINHLVVVINKMDE 174 (245)
T ss_dssp SS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHH-HHHHHHHT--TCSSEEEEEECTTS
T ss_pred cc--ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHH-HHHHHHHc--CCCeEEEEEEcCCC
Confidence 33 34669999999999999989999999999999998742111 1111 22222222 44 47899999998
Q ss_pred ccchHhhhhhhhcCCCCccHHHHHHHHHHcC------CceeEEeccCCcccHHHHH
Q psy10443 123 REDRETLNLLSEQNLSPVKREQGQKLANKIR------AVKYMECSALTQRGLRQVF 172 (195)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~ 172 (195)
......+..+.+ ..++...+..... .++++++||++|+|+.+++
T Consensus 175 ~~~~~~e~~~~e------i~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~ 224 (245)
T d1r5ba3 175 PSVQWSEERYKE------CVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 224 (245)
T ss_dssp TTCSSCHHHHHH------HHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccchhHHHHHH------HHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence 653211110000 0122222222221 2679999999999997653
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.74 E-value=6.5e-17 Score=114.51 Aligned_cols=110 Identities=20% Similarity=0.192 Sum_probs=77.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC--CCCCC---cccce--------------eeccceeEEeCCEEEEEEEEeCCCCcccc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD--SFPGE---YVPTV--------------FDNYSAPFTVDGIPVSLGLWDTAGQEDYD 68 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~--~~~~~---~~~t~--------------~~~~~~~~~~~~~~~~l~~~D~~G~~~~~ 68 (195)
||+++|+.++|||||+.+++.. ..... ...++ .......+..++. +++++||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~--~~n~iDtPGh~dF~ 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGH--RVFLLDAPGYGDFV 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTE--EEEEEECCCSGGGH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccccccc--ceeEEccCchhhhh
Confidence 7999999999999999998542 11100 00111 0000123445555 45699999999999
Q ss_pred ccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 69 RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
......++.+|++|+|+|+.+.-..+... .|. ..... ++|.++++||+|..
T Consensus 82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~-~~~-~~~~~--~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 82 GEIRGALEAADAALVAVSAEAGVQVGTER-AWT-VAERL--GLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHH-HHHHT--TCCEEEEEECGGGC
T ss_pred hhhhhhhcccCceEEEeeccCCccchhHH-HHH-hhhhc--cccccccccccccc
Confidence 88888999999999999999876666554 354 44443 79999999999975
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=4.1e-18 Score=119.31 Aligned_cols=153 Identities=14% Similarity=0.069 Sum_probs=95.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc--CCCCC----------------C--c------------ccceeeccceeEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT--DSFPG----------------E--Y------------VPTVFDNYSAPFTVDG 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~--~~~~~----------------~--~------------~~t~~~~~~~~~~~~~ 51 (195)
+..+||+++|..++|||||+.+|+. +.+.. . + ...+.+.....+..++
T Consensus 4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~ 83 (239)
T d1f60a3 4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 83 (239)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence 4568999999999999999999863 11100 0 0 0001111112333444
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcH------HHHHHhhHHHHhhhCCCCc-EEEEeeCCCccc
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSF------DNVTSKWYPELKHHCPDAP-IILVGTKIDLRE 124 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~ 124 (195)
.++.|.|+|||..|.......+..+|++|+|+|+.+..-- ....++| ...... ++| +++++||+|+..
T Consensus 84 --~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~-~~~~~~--gv~~iiv~iNKmD~~~ 158 (239)
T d1f60a3 84 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFTL--GVRQLIVAVNKMDSVK 158 (239)
T ss_dssp --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHHT--TCCEEEEEEECGGGGT
T ss_pred --EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHH-HHHHHc--CCCeEEEEEECCCCCC
Confidence 4566999999999998888899999999999999864210 0122223 222222 565 788899999876
Q ss_pred chHhhhhhhhcCCCCccHHHHHHHHHHcCC----ceeEEeccCCcccHH
Q psy10443 125 DRETLNLLSEQNLSPVKREQGQKLANKIRA----VKYMECSALTQRGLR 169 (195)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~v~ 169 (195)
.+..... ...++...+....+. ++++.+|+..|+|+-
T Consensus 159 ~d~~~~~--------~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~ 199 (239)
T d1f60a3 159 WDESRFQ--------EIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI 199 (239)
T ss_dssp TCHHHHH--------HHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred CCHHHHH--------HHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence 5431110 112344455554442 568999999998863
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=5.4e-18 Score=116.88 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=76.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCC----CCCccE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLS----YPQTDV 80 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~----~~~~d~ 80 (195)
.+..|+++|.+|||||||+|+|++..+.+ .++.......+..++ ..+.+||+||++.+...+..+ ...++.
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~---~tt~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~ 76 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG 76 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCC---BCCCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence 35689999999999999999999876532 122222222333334 445699999998776554443 445689
Q ss_pred EEEEEeCCC-hhcHHHHHHhhH----HHHhh-hCCCCcEEEEeeCCCcccc
Q psy10443 81 FLICYSVVS-PSSFDNVTSKWY----PELKH-HCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 81 ~i~v~d~~~-~~s~~~~~~~~~----~~~~~-~~~~~p~vvv~nK~D~~~~ 125 (195)
+++++|+.+ ..++..... |+ ..+.. ...++|+++++||+|+...
T Consensus 77 ~i~~vd~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~ 126 (209)
T d1nrjb_ 77 LIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTA 126 (209)
T ss_dssp EEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred cceEEEEecccccHHHHHH-HHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence 999999764 455555443 32 22222 2458999999999998764
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.70 E-value=1.6e-17 Score=115.69 Aligned_cols=157 Identities=14% Similarity=0.105 Sum_probs=93.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC--CCCC------------------------------CcccceeeccceeEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD--SFPG------------------------------EYVPTVFDNYSAPFTVDG 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~------------------------------~~~~t~~~~~~~~~~~~~ 51 (195)
++.+||+++|.-++|||||+.+|+.. .... .....+.......+..+
T Consensus 1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~- 79 (224)
T d1jnya3 1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK- 79 (224)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-
T ss_pred CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecC-
Confidence 35799999999999999999998531 1100 00000001111122233
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHH------HHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDN------VTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
.+.+.+.|+|||..|.......++-+|++|+|+|+.+...-+. ..+ .+..... ....++++++||+|+...
T Consensus 80 -~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e-~l~~~~~-~~~~~iIv~iNK~D~~~~ 156 (224)
T d1jnya3 80 -KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTRE-HIILAKT-MGLDQLIVAVNKMDLTEP 156 (224)
T ss_dssp -SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHH-HHHHHHH-TTCTTCEEEEECGGGSSS
T ss_pred -CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHH-HHHHHHH-hCCCceEEEEEcccCCCc
Confidence 3567799999999999999999999999999999987532111 111 1111111 123468888999998754
Q ss_pred hHhhhhhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHHH
Q psy10443 126 RETLNLLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLRQ 170 (195)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~ 170 (195)
.......+ ....+...+...++ .++++++||..|.|+.+
T Consensus 157 ~~~~~~~~------~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 157 PYDEKRYK------EIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp TTCHHHHH------HHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred cccHHHHH------HHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 32111100 11123444444432 25789999999999853
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=3.3e-16 Score=114.39 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=82.6
Q ss_pred CCCCcce-EEEEEcCCCCchHHHHHHhhcC--CCCC------Ccccceeec------c-ce--eEE--------------
Q psy10443 1 MSSGRPI-KCVVVGDGTVGKTCMLISYTTD--SFPG------EYVPTVFDN------Y-SA--PFT-------------- 48 (195)
Q Consensus 1 m~~~~~~-~i~v~G~~~~GKtsli~~l~~~--~~~~------~~~~t~~~~------~-~~--~~~-------------- 48 (195)
|.+...+ ||+|+|+.++|||||+.+|+.. .... .+..+.... . .. .+.
T Consensus 11 m~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~ 90 (341)
T d1n0ua2 11 MDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQK 90 (341)
T ss_dssp HHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSC
T ss_pred hcCcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcc
Confidence 3455667 5999999999999999998631 1100 000000000 0 00 111
Q ss_pred eCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCccc
Q psy10443 49 VDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124 (195)
Q Consensus 49 ~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 124 (195)
.++..+.++++|||||..|.......++-+|++++|+|+.+.-..+... .|...... ++|+++++||+|...
T Consensus 91 ~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~-~~~~a~~~---~~p~i~viNKiDr~~ 162 (341)
T d1n0ua2 91 TDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQALGE---RIKPVVVINKVDRAL 162 (341)
T ss_dssp CCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHHT---TCEEEEEEECHHHHH
T ss_pred ccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHH-HHHHHHHc---CCCeEEEEECccccc
Confidence 1345678999999999999998888999999999999999876666554 35444444 799999999999754
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.63 E-value=3.4e-16 Score=117.47 Aligned_cols=164 Identities=13% Similarity=0.160 Sum_probs=93.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCC------cccceeeccceeEEe-CCEEEEEEEEeCCCCcccccc-----CC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGE------YVPTVFDNYSAPFTV-DGIPVSLGLWDTAGQEDYDRL-----RP 72 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~------~~~t~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~-----~~ 72 (195)
.+++|+|+|.+|||||||+|.|++...... ..+|+... ..+.. ++.. +.+|||||-...... ..
T Consensus 55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~--~~~~~~~~~~--~~l~DtPG~~~~~~~~~~~~~~ 130 (400)
T d1tq4a_ 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER--HPYKHPNIPN--VVFWDLPGIGSTNFPPDTYLEK 130 (400)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC--EEEECSSCTT--EEEEECCCGGGSSCCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceee--eeeeccCCCe--EEEEeCCCcccccccHHHHHHH
Confidence 479999999999999999999998532111 11122211 11112 2223 449999995433211 12
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHH----HH---
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKRE----QG--- 145 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~----~~--- 145 (195)
..+..+|.++++.|.. -.-.+. .+...+... +.|+++|.||+|.....+.... ......+ +.
T Consensus 131 ~~~~~~d~~l~~~~~~--~~~~d~--~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~~-----~~~~~~e~~l~~ir~~ 199 (400)
T d1tq4a_ 131 MKFYEYDFFIIISATR--FKKNDI--DIAKAISMM--KKEFYFVRTKVDSDITNEADGE-----PQTFDKEKVLQDIRLN 199 (400)
T ss_dssp TTGGGCSEEEEEESSC--CCHHHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHHTTC-----CTTCCHHHHHHHHHHH
T ss_pred hhhhcceEEEEecCCC--CCHHHH--HHHHHHHHc--CCCEEEEEeCcccccchhhhcc-----cccccHHHHHHHHHHH
Confidence 2345678888887643 222222 255555554 7899999999997543321110 0111111 11
Q ss_pred -HHHHHH--cCCceeEEeccCC--cccHHHHHHHHHHHHcCCC
Q psy10443 146 -QKLANK--IRAVKYMECSALT--QRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 146 -~~~~~~--~~~~~~~~~Sa~~--~~~v~~~~~~l~~~~~~~~ 183 (195)
...... ....++|.+|..+ ..|+.++.+.+.+.+.+.+
T Consensus 200 ~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~ 242 (400)
T d1tq4a_ 200 CVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 242 (400)
T ss_dssp HHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHH
Confidence 111122 2334578888765 4589999999888876543
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.53 E-value=7.4e-14 Score=98.75 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=75.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc---------CC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL---------RP 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~---------~~ 72 (195)
..+++|+++|.+|+|||||+|.+++.... ....+++..........++..+. ++||||-...... ..
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~--viDTPGl~~~~~~~~~~~~~i~~~ 107 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLN--IIDTPGLIEGGYINDMALNIIKSF 107 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEE--EEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEE--EEeeecccCCcchHHHHHHHHHHH
Confidence 46799999999999999999999986532 23345555555566677776554 9999994322111 01
Q ss_pred CCCCCccEEEEEEeCCChh-cHHHHHHhhHHHHhhh-CC--CCcEEEEeeCCCcccch
Q psy10443 73 LSYPQTDVFLICYSVVSPS-SFDNVTSKWYPELKHH-CP--DAPIILVGTKIDLREDR 126 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~-~~--~~p~vvv~nK~D~~~~~ 126 (195)
......++++||++++... +..+.. .+..+... .+ -.++++|+||+|...++
T Consensus 108 ~~~~~~~~il~v~~~~~~r~~~~~~~--~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~ 163 (257)
T d1h65a_ 108 LLDKTIDVLLYVDRLDAYRVDNLDKL--VAKAITDSFGKGIWNKAIVALTHAQFSPPD 163 (257)
T ss_dssp TTTCEECEEEEEEESSCCCCCHHHHH--HHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HhcCCCCeEEEEEECCCCCCCHHHHH--HHHHHHHHcchhhhhCEEEEEECcccCCcC
Confidence 1234578999999886532 222211 22222221 11 24789999999987654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.52 E-value=1.6e-14 Score=101.45 Aligned_cols=124 Identities=15% Similarity=0.043 Sum_probs=69.0
Q ss_pred EEEEEeCCCCccccccCCCC-----CCCccEEEEEEeCCChhcHHHHHHhhH-HHHhhhCCCCcEEEEeeCCCcccchHh
Q psy10443 55 SLGLWDTAGQEDYDRLRPLS-----YPQTDVFLICYSVVSPSSFDNVTSKWY-PELKHHCPDAPIILVGTKIDLREDRET 128 (195)
Q Consensus 55 ~l~~~D~~G~~~~~~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~p~vvv~nK~D~~~~~~~ 128 (195)
.+.+.|+||+..+....... ....+.+++++|+......+.....++ .......-..|.++++||+|+......
T Consensus 96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~~ 175 (244)
T d1yrba1 96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEK 175 (244)
T ss_dssp SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHH
T ss_pred ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHHH
Confidence 36699999987653221111 224568899999864333222211111 111111126899999999999876543
Q ss_pred hhhhhhcCC-----------CCccHH---H-HHHHHHHcCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 129 LNLLSEQNL-----------SPVKRE---Q-GQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 129 ~~~~~~~~~-----------~~~~~~---~-~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
......... .....+ . ........+.++++++||++|+|+++++..|.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 176 ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 322111000 000000 0 1111223455789999999999999999998774
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.34 E-value=4.3e-12 Score=92.05 Aligned_cols=102 Identities=13% Similarity=0.132 Sum_probs=58.8
Q ss_pred EEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhc
Q psy10443 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQ 135 (195)
Q Consensus 56 l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~ 135 (195)
+.|+.|.|-..... ....-+|.+++|..+...+..+....-.++ .+=++|+||+|+......
T Consensus 146 ~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE--------~aDi~vvNKaD~~~~~~~------- 207 (323)
T d2qm8a1 146 VILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIFE--------LADMIAVNKADDGDGERR------- 207 (323)
T ss_dssp EEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHHH--------HCSEEEEECCSTTCCHHH-------
T ss_pred eEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhhhhHhh--------hhheeeEeccccccchHH-------
Confidence 44666655322211 123358999999999887776654321221 123888999998765421
Q ss_pred CCCCccHHHHHHHHHH---------cCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 136 NLSPVKREQGQKLANK---------IRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 136 ~~~~~~~~~~~~~~~~---------~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.......+... .+..+++.+||++|.|+++++++|.+...
T Consensus 208 -----~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~ 256 (323)
T d2qm8a1 208 -----ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 256 (323)
T ss_dssp -----HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 11111111111 14467999999999999999999977643
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=2.4e-12 Score=93.47 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=50.9
Q ss_pred CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH---
Q psy10443 74 SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN--- 150 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 150 (195)
+...+|.+++|.++...+..+.... .+-+ ++=++|+||+|......... ...+.....+
T Consensus 164 i~~~aD~~l~v~~P~~Gd~iq~~k~----gi~e----~aDi~VvNKaD~~~~~~~~~----------~~~~~~~al~~~~ 225 (327)
T d2p67a1 164 VARMVDCFISLQIAGGGDDLQGIKK----GLME----VADLIVINKDDGDNHTNVAI----------ARHMYESALHILR 225 (327)
T ss_dssp HHTTCSEEEEEECC------CCCCH----HHHH----HCSEEEECCCCTTCHHHHHH----------HHHHHHHHHHHSC
T ss_pred hhhccceEEEEecCCCchhhhhhch----hhhc----cccEEEEEeecccchHHHHH----------HHHHHHHHhhhcc
Confidence 3456899999988766555543332 1211 12278889999876432111 1111122111
Q ss_pred ---HcCCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 151 ---KIRAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 151 ---~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
..+..+++.|||.+|+|++++++.|.+..
T Consensus 226 ~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~ 257 (327)
T d2p67a1 226 RKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 257 (327)
T ss_dssp CSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred cCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence 12336799999999999999999998754
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.16 E-value=1.4e-10 Score=82.61 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=54.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCC------------EE---EEEEEEeCCCCccc--
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDG------------IP---VSLGLWDTAGQEDY-- 67 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------------~~---~~l~~~D~~G~~~~-- 67 (195)
.+||.++|.|+||||||++++++... ..+|+.|+...-...+.+.+ .. ..+.+.|+||--.-
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 36999999999999999999998654 35666666443333333322 12 24779999994322
Q ss_pred --cccCCCC---CCCccEEEEEEeCC
Q psy10443 68 --DRLRPLS---YPQTDVFLICYSVV 88 (195)
Q Consensus 68 --~~~~~~~---~~~~d~~i~v~d~~ 88 (195)
..+...+ ++.+|+++.|+|+.
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred cCCCccHHHHHHHHhccceEEEeecc
Confidence 2233444 56899999999874
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.11 E-value=1.3e-10 Score=84.35 Aligned_cols=83 Identities=14% Similarity=0.112 Sum_probs=45.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccce-e---------------------EEeCCEEEEEEEEeCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSA-P---------------------FTVDGIPVSLGLWDTAG 63 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~-~---------------------~~~~~~~~~l~~~D~~G 63 (195)
++|.++|.|+||||||+|.|++... ..+|+.|+.+.-.+ . .........++++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 4899999999999999999998643 35566555221111 0 00112335688999999
Q ss_pred Cccc-------cccCCCCCCCccEEEEEEeCCC
Q psy10443 64 QEDY-------DRLRPLSYPQTDVFLICYSVVS 89 (195)
Q Consensus 64 ~~~~-------~~~~~~~~~~~d~~i~v~d~~~ 89 (195)
--.. .......++.+|++++|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 4221 1112334678999999999864
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=1.1e-09 Score=78.77 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEe-----------CC-----------------------
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTV-----------DG----------------------- 51 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~-----------~~----------------------- 51 (195)
-+|+|+|..++|||||+|.|++..+ +....+++.......+.- .+
T Consensus 27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (299)
T d2akab1 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 106 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred CeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCC
Confidence 3799999999999999999999775 444444442111100000 00
Q ss_pred --------E--------EEEEEEEeCCCCcccc-------------ccCCCCCCCcc-EEEEEEeCCChhcHHHHHHhhH
Q psy10443 52 --------I--------PVSLGLWDTAGQEDYD-------------RLRPLSYPQTD-VFLICYSVVSPSSFDNVTSKWY 101 (195)
Q Consensus 52 --------~--------~~~l~~~D~~G~~~~~-------------~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~ 101 (195)
. ...+.++|+||-.... .+...|+.+.+ ++++|.+++......... .+.
T Consensus 107 ~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~-~~~ 185 (299)
T d2akab1 107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-KIA 185 (299)
T ss_dssp TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-HHH
T ss_pred CcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHH-HHH
Confidence 0 0126799999954321 22233445555 556777776555544443 244
Q ss_pred HHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 102 PELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 102 ~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
..+... ..++++|+||+|.....
T Consensus 186 ~~~~~~--~~r~i~Vltk~D~~~~~ 208 (299)
T d2akab1 186 KEVDPQ--GQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHCTT--CSSEEEEEECGGGSCTT
T ss_pred HHhCcC--CCceeeEEeccccccch
Confidence 444433 46899999999987653
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.01 E-value=8.1e-10 Score=79.30 Aligned_cols=86 Identities=23% Similarity=0.279 Sum_probs=60.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCE---------------EEEEEEEeCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGI---------------PVSLGLWDTAGQED 66 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~~~D~~G~~~ 66 (195)
...+||.++|.|+||||||++.+++... ..+|+.|+.+.-...+.+.+. ...+.+.|+||...
T Consensus 8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~ 87 (296)
T d1ni3a1 8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 87 (296)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence 3568999999999999999999997642 577888875543444444321 24577999998432
Q ss_pred cc----cc---CCCCCCCccEEEEEEeCCC
Q psy10443 67 YD----RL---RPLSYPQTDVFLICYSVVS 89 (195)
Q Consensus 67 ~~----~~---~~~~~~~~d~~i~v~d~~~ 89 (195)
-. .+ ...-++.+|+++.|+|+.+
T Consensus 88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccccccHHHHHHHhhccceeEEEEeccC
Confidence 21 11 1223578999999999865
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.97 E-value=1.7e-10 Score=83.33 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF 31 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~ 31 (195)
-+|+|+|..++|||||+|.|++..+
T Consensus 25 P~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 25 PQIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CeEEEEeCCCCCHHHHHHHHhCCCC
Confidence 3799999999999999999999765
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.66 E-value=6.1e-08 Score=65.93 Aligned_cols=86 Identities=15% Similarity=0.225 Sum_probs=62.0
Q ss_pred CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc-
Q psy10443 74 SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI- 152 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 152 (195)
...+.|.+++|+++.+|+.-....++++...... ++|.+||+||+|+..+.. .+....+...+
T Consensus 7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~--~i~pvIvlnK~DL~~~~~--------------~~~~~~~~~~~~ 70 (225)
T d1u0la2 7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDLYDEDD--------------LRKVRELEEIYS 70 (225)
T ss_dssp TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHHH--------------HHHHHHHHHHHT
T ss_pred CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEEEEeCcccCCHHH--------------HHHHHHhhcccc
Confidence 4568899999999988765444444566666655 899999999999976532 12233333332
Q ss_pred CCceeEEeccCCcccHHHHHHHH
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEA 175 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l 175 (195)
...+++.+|++++.|++++...+
T Consensus 71 ~~~~v~~vSa~~~~g~~~L~~~l 93 (225)
T d1u0la2 71 GLYPIVKTSAKTGMGIEELKEYL 93 (225)
T ss_dssp TTSCEEECCTTTCTTHHHHHHHH
T ss_pred cceeEEEeccccchhHhhHHHHh
Confidence 33678999999999999988766
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.63 E-value=1.6e-08 Score=71.59 Aligned_cols=56 Identities=25% Similarity=0.383 Sum_probs=34.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~ 64 (195)
...++|+|+|.||||||||+|+|.+... ....++++..... +.. +.. +.++||||-
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~--i~~-~~~--~~l~DTPGi 167 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKE--LELLDTPGI 167 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTT--EEEEECCCC
T ss_pred CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceE--EEC-CCC--eEEecCCCc
Confidence 4679999999999999999999998653 2233333332211 122 222 559999995
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.44 E-value=4.5e-08 Score=66.80 Aligned_cols=86 Identities=22% Similarity=0.250 Sum_probs=59.5
Q ss_pred CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHH---HH
Q psy10443 74 SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKL---AN 150 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 150 (195)
...+.|.+++|+++.+|+--....++++...... +++.+||+||+|+..+.+. .+....+ ..
T Consensus 7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~--~i~pvIvlnK~DL~~~~~~-------------~~~~~~~~~~y~ 71 (231)
T d1t9ha2 7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQDT-------------EDTIQAYAEDYR 71 (231)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHHH-------------HHHHHHHHHHHH
T ss_pred CccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc--CCCEEEEEecccccccHHH-------------HHHHHHHHHHHh
Confidence 4568899999999988764444444566655554 8999999999999875421 1222222 33
Q ss_pred HcCCceeEEeccCCcccHHHHHHHH
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEA 175 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l 175 (195)
..+ .+++.+|++++.|++++...+
T Consensus 72 ~~g-~~v~~~Sa~~~~gl~~L~~~l 95 (231)
T d1t9ha2 72 NIG-YDVYLTSSKDQDSLADIIPHF 95 (231)
T ss_dssp HHT-CCEEECCHHHHTTCTTTGGGG
T ss_pred hcc-ccceeeecCChhHHHHHHHhh
Confidence 345 689999999999888776554
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.39 E-value=3.4e-07 Score=64.57 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=59.4
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI 152 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
..+..+|++++|+|+.+|-+..+.. +...+ .+.|+++|+||+|+..... .+...++.+..
T Consensus 11 ~~i~~~DvIl~V~DaR~P~ss~~~~--l~~~~----~~Kp~IlVlNK~DLv~~~~--------------~~~w~~~f~~~ 70 (273)
T d1puja_ 11 EKLKLIDIVYELVDARIPMSSRNPM--IEDIL----KNKPRIMLLNKADKADAAV--------------TQQWKEHFENQ 70 (273)
T ss_dssp HHGGGCSEEEEEEETTSTTTTSCHH--HHHHC----SSSCEEEEEECGGGSCHHH--------------HHHHHHHHHTT
T ss_pred HHHHhCCEEEEEEECCCCCCCCCHH--HHHHH----cCCCeEEEEECccCCchHH--------------HHHHHHHHHhc
Confidence 3577899999999998886644321 22222 3689999999999987532 12222222333
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
+ ...+.+|+.++.+..++...+.+.+.+
T Consensus 71 ~-~~~i~isa~~~~~~~~~~~~~~~~l~~ 98 (273)
T d1puja_ 71 G-IRSLSINSVNGQGLNQIVPASKEILQE 98 (273)
T ss_dssp T-CCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred C-CccceeecccCCCccccchhhhhhhhh
Confidence 3 578899999999888887777665543
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.35 E-value=5.3e-07 Score=60.90 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.1
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.++.-|+++|++||||||.+-+|..
T Consensus 8 ~~~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 8 PEPPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999877654
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.34 E-value=7.1e-07 Score=60.09 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=21.8
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
..++.-|+++|++||||||.+-+|..
T Consensus 6 ~~~p~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 6 GKAPFVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp SCTTEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45577899999999999999988754
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.33 E-value=3.2e-07 Score=61.89 Aligned_cols=92 Identities=11% Similarity=-0.017 Sum_probs=50.7
Q ss_pred EEEEEEeCCCCcccccc------CCCC--CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 54 VSLGLWDTAGQEDYDRL------RPLS--YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~------~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
+.+.++||+|...+... .... ..+.+-+++|++++........ ........ + +--+++||.|....
T Consensus 95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~---~~~~~~~~--~-~~~lI~TKlDet~~ 168 (211)
T d1j8yf2 95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDL---ASKFNQAS--K-IGTIIITKMDGTAK 168 (211)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHHC--T-TEEEEEECTTSCSC
T ss_pred CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHH---Hhhhhccc--C-cceEEEecccCCCc
Confidence 34669999996544310 0111 1145678899998765332221 22222221 2 23467899997554
Q ss_pred hHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHH
Q psy10443 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQ 170 (195)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 170 (195)
.-.+..+....+ +|+..++ +|+++++
T Consensus 169 ----------------~G~~l~~~~~~~-lPi~~it--~Gq~v~D 194 (211)
T d1j8yf2 169 ----------------GGGALSAVAATG-ATIKFIG--TGEKIDE 194 (211)
T ss_dssp ----------------HHHHHHHHHTTT-CCEEEEE--CSSSTTC
T ss_pred ----------------ccHHHHHHHHHC-cCEEEEe--CCCCccc
Confidence 345666667776 6766665 4666543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.29 E-value=4e-07 Score=61.81 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
..+++|.+|||||||+|.|...
T Consensus 97 t~~~~G~SGVGKSTLiN~L~~~ 118 (225)
T d1u0la2 97 ISTMAGLSGVGKSSLLNAINPG 118 (225)
T ss_dssp EEEEECSTTSSHHHHHHHHSTT
T ss_pred eEEEECCCCCCHHHHHHhhcch
Confidence 5789999999999999999875
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.23 E-value=2.8e-07 Score=62.03 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=20.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++--|+++|++||||||.+-+|..
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455688999999999999877654
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=3.3e-06 Score=57.54 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=18.7
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
.+|.|.-|||||||+++++..
T Consensus 6 ~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 6 TLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEESSSSSCHHHHHHHHHS
T ss_pred EEEeeCCCCCHHHHHHHHHhc
Confidence 578899999999999999874
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.18 E-value=5.7e-07 Score=60.02 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=26.3
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|.++++..|+|+|+|||||||+.++|..
T Consensus 1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 1 MEKSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 8889999999999999999999999876
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.16 E-value=5.3e-07 Score=61.43 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
..+++|.+|||||||+|.|.+.
T Consensus 99 ~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 99 TTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred eEEEECCCCccHHHHHHhhccH
Confidence 5689999999999999999985
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.13 E-value=9.3e-07 Score=59.49 Aligned_cols=84 Identities=18% Similarity=0.032 Sum_probs=46.6
Q ss_pred EEEEEeCCCCccccccCCC----C--CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHh
Q psy10443 55 SLGLWDTAGQEDYDRLRPL----S--YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRET 128 (195)
Q Consensus 55 ~l~~~D~~G~~~~~~~~~~----~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~ 128 (195)
.+.++||+|...+...... + ..+.+-+++|.|++....-......+...+. +--++++|.|....
T Consensus 94 d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~------~~~~I~TKlDe~~~--- 164 (207)
T d1ls1a2 94 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG------VTGLVLTKLDGDAR--- 164 (207)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC------CCEEEEECGGGCSS---
T ss_pred cceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC------CCeeEEeecCcccc---
Confidence 4669999996554321111 1 2256788999998765433322222222221 22477899996443
Q ss_pred hhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 129 LNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
.-.+..++...+ .|+..++
T Consensus 165 -------------~G~~l~~~~~~~-~Pi~~i~ 183 (207)
T d1ls1a2 165 -------------GGAALSARHVTG-KPIYFAG 183 (207)
T ss_dssp -------------CHHHHHHHHHHC-CCEEEEC
T ss_pred -------------chHHHHHHHHHC-CCEEEEe
Confidence 234556666666 5665553
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.98 E-value=2.2e-06 Score=55.79 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=24.1
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++.++|++.|++||||||+.+.|...
T Consensus 2 ~pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 2 QPKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 468899999999999999999998763
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.97 E-value=1.8e-06 Score=56.46 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+||+++|++|+|||||++.+.+
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHh
Confidence 5899999999999999999886
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.90 E-value=2.6e-06 Score=55.96 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=+|+|.|++|||||||+++|...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999863
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.88 E-value=3.9e-06 Score=53.38 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=20.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+.+ |++.|.|||||||++++|...
T Consensus 1 Mkkl-Iii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 1 MKKI-ILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp CCEE-EEEECCTTSSHHHHHHHHHHH
T ss_pred CCEE-EEEECCCCCCHHHHHHHHHHh
Confidence 3455 788999999999999998753
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.81 E-value=7.3e-06 Score=54.34 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=24.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+.+-++|+++|+|||||||+...|...
T Consensus 3 ~~r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 3 SARLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999999999863
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.81 E-value=4.7e-06 Score=55.18 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+|++|+|+|+|||||||+...|...
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999888753
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.79 E-value=6.9e-06 Score=54.37 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=22.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+.++|+++|+|||||||+...|..
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999875
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.76 E-value=6.6e-06 Score=53.28 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
-.+|+++|+|||||||+.+.|..
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=6.9e-06 Score=53.05 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=18.8
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q psy10443 9 CVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~ 28 (195)
|+|+|.+|||||||++++..
T Consensus 5 i~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 5 LAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 89999999999999999985
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.70 E-value=9.7e-06 Score=53.12 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+||+|+|+|||||||+...|..
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988865
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.68 E-value=1.1e-05 Score=52.18 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=18.6
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q psy10443 9 CVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~ 28 (195)
|++.|++||||||+.++|..
T Consensus 5 I~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999875
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.66 E-value=1.3e-05 Score=52.62 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+||+++|+|||||||+...|...
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998753
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.64 E-value=1.3e-05 Score=52.54 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
++|+++|+|||||||+...|...
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988863
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.60 E-value=2.5e-05 Score=50.85 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=22.6
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.++.=|+++|.|||||||+..++..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999999999864
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=1.7e-05 Score=51.90 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+||+|+|+|||||||+.+.|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999988865
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.57 E-value=2.1e-05 Score=51.55 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++|+|+|+|||||||+.+.|...
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=2.6e-05 Score=51.58 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|+.|+|+|+|||||||....|..
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999988875
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.50 E-value=2.5e-05 Score=50.36 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=17.8
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q psy10443 9 CVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~ 28 (195)
+.|+|.+|||||||+++|..
T Consensus 4 i~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 35999999999999999875
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.48 E-value=4.3e-05 Score=49.54 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=22.5
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.+.+-|.++|.+||||||+.+.|..
T Consensus 3 ~~~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 3 ATQGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999999999988764
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=2.7e-05 Score=49.75 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+|+++|++||||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988753
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.48 E-value=3.4e-05 Score=52.10 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=22.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|+.++|+|-|++||||||....|..
T Consensus 1 Mk~i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 1 MKTIQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 6788999999999999999999876
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.43 E-value=4.8e-05 Score=50.37 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=24.9
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.+++++-|+|-|..||||||+++.|...
T Consensus 5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999998753
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=8.9e-05 Score=51.89 Aligned_cols=60 Identities=17% Similarity=-0.023 Sum_probs=37.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCccc----ce-eeccceeEEeCCEEEEEEEEeCCCCcc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVP----TV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~----t~-~~~~~~~~~~~~~~~~l~~~D~~G~~~ 66 (195)
.=|.|+|+.++|||+|+|.|++....-...+ .+ +--....-..++....+.+.|+.|-..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~ 97 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 97 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence 3678999999999999999998653222222 22 111111111244555677999998644
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=5.4e-05 Score=49.48 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+++|++||||+||+++|...
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 888999999999999999853
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.39 E-value=5.3e-05 Score=50.59 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|.=|+++|.|||||||+.++|..
T Consensus 2 p~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 2 PTLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999875
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.38 E-value=6.6e-05 Score=49.68 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=22.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+.+.--|+++|+|||||||+...|...
T Consensus 5 ~~~~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 5 PDQVSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344556899999999999999999763
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=4.8e-05 Score=50.21 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+..-+++++|+||||||+++..|...
T Consensus 41 ~~k~n~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCeEEEecCCcccHHHHHHHHHH
Confidence 34568999999999999999888764
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.35 E-value=4.4e-05 Score=49.18 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
+|+++|.+||||||+.+.|..
T Consensus 3 ~IvliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988754
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.34 E-value=4.9e-05 Score=50.02 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+|+|++|||||||+++|...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999763
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=4.5e-05 Score=49.62 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.|++.|++|+|||||+..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999988875
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.33 E-value=6.9e-05 Score=52.01 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
..+.-|++.|+||+||||+++.+.+.
T Consensus 30 ~~P~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 30 ESPTAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998763
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.33 E-value=5.6e-05 Score=49.28 Aligned_cols=20 Identities=30% Similarity=0.162 Sum_probs=17.8
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q psy10443 9 CVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~ 28 (195)
|+|.|.+||||||+++.|..
T Consensus 4 I~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78889999999999998854
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.32 E-value=5.5e-05 Score=48.57 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
+|+++|.+||||||+...|..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988755
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=8.9e-05 Score=47.68 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=21.8
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+..+-=++++|.+||||||+.+.|...
T Consensus 3 ~~~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 3 NHDHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445556778999999999999998763
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.29 E-value=0.0001 Score=48.49 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=22.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
..++-|.|.|++|||||||.++|..
T Consensus 20 ~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999999999999865
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.28 E-value=0.00017 Score=48.85 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|||||||++.+.+-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~gl 54 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGCL 54 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCcchhhHhccCC
Confidence 5789999999999999988764
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.28 E-value=7.4e-05 Score=51.17 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=+++|+|++|+|||||++.+.+-
T Consensus 30 e~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 30 EVIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999864
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.27 E-value=7.6e-05 Score=48.18 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=|++.|++||||||+.+.|...
T Consensus 6 iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999888753
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=5.5e-05 Score=49.80 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+..-|+++|.|||||||+.+.|..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567889999999999999999865
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.25 E-value=7.5e-05 Score=48.86 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.8
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+++|++|||||||++.|...
T Consensus 5 ivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 678999999999999998754
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=7.9e-05 Score=51.79 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
...-+++++|+||||||++++.|...
T Consensus 37 ~~k~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 37 RRKNNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccCCcEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999888764
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.23 E-value=0.0023 Score=43.50 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++.|++|+||||++..+...
T Consensus 34 ~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 34 PHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999888763
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.21 E-value=9.2e-05 Score=48.85 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=18.5
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q psy10443 9 CVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~ 28 (195)
|+|+|++|||||||+++|..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999865
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.19 E-value=0.00034 Score=47.67 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.+.++|++|+|||||++.+.+-
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl 52 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGL 52 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999999864
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.18 E-value=0.00026 Score=48.19 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-+.++|++|+|||||++.+.+-
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl 55 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGL 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5789999999999999999874
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.18 E-value=0.0003 Score=47.97 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-+.++|++|||||||++.+.+-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl 54 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLL 54 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999999864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.16 E-value=0.00029 Score=47.99 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl 47 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 3578999999999999999974
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.16 E-value=0.00012 Score=50.18 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=.++++|++|+|||||++.+.+-
T Consensus 29 e~vaivG~sGsGKSTLl~ll~gl 51 (242)
T d1mv5a_ 29 SIIAFAGPSGGGKSTIFSLLERF 51 (242)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999998864
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.00011 Score=49.11 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=19.1
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+|+|++|||||||+++|...
T Consensus 5 ivi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 5 YIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999864
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.16 E-value=9.4e-05 Score=49.57 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=23.6
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+.+..-|.+.|.||||||||.+.|..
T Consensus 20 ~~~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 20 RNQRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788899999999999999998874
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.14 E-value=0.00012 Score=50.54 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+-
T Consensus 43 ~iaivG~sGsGKSTLl~ll~gl 64 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITRF 64 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCChHHHHHHHHhcc
Confidence 7999999999999999998863
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.14 E-value=7.1e-05 Score=49.49 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
++--|+++|+|||||||+..+|...
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3445889999999999999999763
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.00013 Score=50.27 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+-
T Consensus 42 ~vaivG~sGsGKSTLl~li~gl 63 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQNL 63 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 7899999999999999998864
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.12 E-value=0.00013 Score=48.58 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|+.|+|||||++.+++-
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl 50 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTY 50 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcc
Confidence 5789999999999999999864
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.10 E-value=0.00024 Score=48.03 Aligned_cols=22 Identities=27% Similarity=0.230 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl 49 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGF 49 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999974
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=0.00017 Score=48.26 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.|+-|+|.|.+|||||||.+.|..
T Consensus 1 ~P~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 1 EPFLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999999988854
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.00014 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|+|||||++.+.+-
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl 49 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGL 49 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999988874
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.08 E-value=0.00015 Score=46.82 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=17.9
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q psy10443 9 CVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~ 28 (195)
|+++|.+||||||+.+.|..
T Consensus 5 Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999988864
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.08 E-value=0.00019 Score=51.31 Aligned_cols=82 Identities=13% Similarity=-0.016 Sum_probs=43.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCC-EEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDG-IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
-+|+|.|..||||||+++.|+....+....-+.++.... .+.. ..+. -+...+...+.......++..--.|+|-
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El--~l~~~~~~~--~~~~~~~~~~~~ll~~~lR~~pd~iivg 242 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI--VFKHHKNYT--QLFFGGNITSADCLKSCLRMRPDRIILG 242 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCC--CCSSCSSEE--EEECBTTBCHHHHHHHHTTSCCSEEEES
T ss_pred CCEEEEeeccccchHHHHHHhhhcccccceeeccchhhh--hcccccccc--eeccccchhHHHHHHHHhccCCCcccCC
Confidence 479999999999999999999744333333333333222 1211 1111 2223333333333444455444445665
Q ss_pred eCCChhc
Q psy10443 86 SVVSPSS 92 (195)
Q Consensus 86 d~~~~~s 92 (195)
-+.+++.
T Consensus 243 EiR~~ea 249 (323)
T d1g6oa_ 243 ELRSSEA 249 (323)
T ss_dssp CCCSTHH
T ss_pred ccCchhH
Confidence 5655543
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.05 E-value=0.00015 Score=47.35 Aligned_cols=21 Identities=33% Similarity=0.324 Sum_probs=17.5
Q ss_pred EEE-EEcCCCCchHHHHHHhhc
Q psy10443 8 KCV-VVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~-v~G~~~~GKtsli~~l~~ 28 (195)
||+ |.|.+||||||+++.|..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 554 579999999999988864
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.05 E-value=0.0004 Score=47.39 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|+.|+|||||++.+.+-
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl 55 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999974
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.03 E-value=0.00017 Score=50.46 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++|+|+.|+|||||++.+.+-
T Consensus 64 ~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6899999999999999999864
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.02 E-value=0.0003 Score=47.94 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl 54 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGL 54 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=97.01 E-value=0.00017 Score=49.23 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-.+++.|+||+||||+++.+.+
T Consensus 35 ~~~~Ll~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 35 LEHLLLFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998875
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.99 E-value=0.00013 Score=50.26 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
=+++++|++|+|||||++.+.+
T Consensus 45 e~vaivG~sGsGKSTLl~ll~g 66 (255)
T d2hyda1 45 ETVAFVGMSGGGKSTLINLIPR 66 (255)
T ss_dssp CEEEEECSTTSSHHHHHTTTTT
T ss_pred CEEEEECCCCCcHHHHHHHHHh
Confidence 3899999999999999987775
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.00047 Score=47.00 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
-+.++|+.|+|||||++.+.+-.
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999753
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.97 E-value=0.00025 Score=45.59 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=|++.|.+||||||+.+.|...
T Consensus 5 iI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3667799999999999998763
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.95 E-value=0.00019 Score=48.81 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
-.+++.|+||+||||+++.+..
T Consensus 36 ~~~L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHh
Confidence 3689999999999999998875
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.91 E-value=0.00062 Score=46.86 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|+.|+|||||++.+.+-
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl 53 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGF 53 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHCC
Confidence 4789999999999999999975
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.85 E-value=0.00047 Score=45.21 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++-|.|.|.+||||||+.+.|...
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 5788999999999999999988654
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.00022 Score=48.52 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|+.|+|||||++.+.+-
T Consensus 27 i~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999873
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.81 E-value=0.00043 Score=47.47 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
...|++.|+||+|||++++.+.+
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHhh
Confidence 45699999999999999999875
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=96.75 E-value=0.00039 Score=47.96 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-+.++|++|+|||||++.+.+-
T Consensus 30 i~~iiG~sGsGKSTLl~~i~Gl 51 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINFL 51 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5789999999999999999864
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.69 E-value=0.00045 Score=47.28 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.+++.|+||+||||++..+.+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998864
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.68 E-value=0.00048 Score=46.58 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
-.+++.|++|+||||+++.+..
T Consensus 46 ~~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3689999999999999988875
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.68 E-value=0.00042 Score=49.20 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++-.++++|+||+|||.|.+.+..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhh
Confidence 345799999999999999999876
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.66 E-value=0.00059 Score=46.97 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+-.+++.|++|+|||++++.+...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999888753
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.62 E-value=0.00049 Score=47.50 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-|+|.|++|+|||||+.++..
T Consensus 31 ~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 31 ITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 578999999999999998875
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=96.60 E-value=0.00034 Score=51.20 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=19.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
..-+++++|+||||||+++..|..
T Consensus 42 ~k~n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCeEECCCCCCHHHHHHHHHH
Confidence 445789999999999999976654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.00057 Score=45.69 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-|+|.|+|||||+|+...|...
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4677899999999999888764
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.54 E-value=0.001 Score=46.50 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.4
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhh
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~ 27 (195)
+.+++=|.|.|.+|||||||...+.
T Consensus 24 ~~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 24 NKCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEeECCCCCCHHHHHHHHH
Confidence 4578999999999999999887653
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.52 E-value=0.0009 Score=47.30 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.++-|.|.|.+||||||+.+.|..
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence 5689999999999999999887754
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.51 E-value=0.00067 Score=46.53 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
-.|++.|+||+|||++++.+.+
T Consensus 43 ~giLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHH
Confidence 3599999999999999999986
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.49 E-value=0.00038 Score=48.25 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=17.4
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
+++.|+||+|||++++.+...
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 345699999999999998753
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.44 E-value=0.00076 Score=45.59 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.+++.|++|+||||+++.+...
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHHH
Confidence 5899999999999999888763
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.43 E-value=0.00092 Score=44.25 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=18.5
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-|+|-|..||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.43 E-value=0.00097 Score=45.97 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+-.|++.|+||+|||++++.+...
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceeEEecCCCCCchHHHHHHHHH
Confidence 457999999999999999998863
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.41 E-value=0.0007 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+-||+++|++|||||-|.++|..
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999865
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.41 E-value=0.00081 Score=45.20 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+++.|++|+||||+++.+..
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCchhhHHHHHH
Confidence 589999999999999988765
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.0012 Score=45.55 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+-.+++.|+||+|||++++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHH
Confidence 34599999999999999999875
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.35 E-value=0.0077 Score=37.95 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+..-|++-|+=|+|||||++.+...
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEecCCCccHHHHHHHHHhh
Confidence 4456889999999999999998875
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.33 E-value=0.00093 Score=44.92 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.+++.|++|+||||++..+...
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHH
Confidence 5899999999999999998763
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.20 E-value=0.00088 Score=46.78 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=17.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++.=|.|.|.+||||||+.+.|..
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 444599999999999999987654
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.0015 Score=43.44 Aligned_cols=20 Identities=25% Similarity=0.139 Sum_probs=17.8
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q psy10443 9 CVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~ 28 (195)
|+|-|..||||||+++.|..
T Consensus 5 IviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77889999999999988764
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.09 E-value=0.0013 Score=45.51 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+-.|++.|++|+|||+|++.+.+.
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcchhHHHHHHHH
Confidence 346999999999999999999863
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.0027 Score=42.11 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+-|.|.|..||||||+.+.|...
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCcCCHHHHHHHHHHC
Confidence 56889999999999999988654
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.03 E-value=0.0019 Score=42.78 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=+.|.|+||+|||+|+..+...
T Consensus 25 v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988754
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.97 E-value=0.0037 Score=41.30 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+-|.|.|..||||||+.+.|..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6689999999999999988764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.96 E-value=0.0025 Score=41.06 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.-|++.|++|+||||+.-.|....
T Consensus 15 ~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 15 LGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHcC
Confidence 458999999999999999988753
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.0015 Score=44.13 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.|+|-|..||||||+++.|...
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988763
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.88 E-value=0.0021 Score=43.36 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++|.|+||+|||+|...+...
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999988754
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.0022 Score=42.70 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.=|+|-|..||||||++..|..
T Consensus 4 ~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 4 ALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3477779999999998877654
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.83 E-value=0.0031 Score=40.66 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.-|++.|++|+||||+...|....
T Consensus 16 ~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 16 VGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 458999999999999999988653
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.80 E-value=0.0013 Score=46.92 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
-.+++.|+||+|||+|++++..
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHH
T ss_pred CeEEEECCCCccHHHHHHHHHH
Confidence 3699999999999999998864
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.77 E-value=0.0029 Score=43.94 Aligned_cols=22 Identities=14% Similarity=0.150 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-|+|.|.+|+|||||+..+++
T Consensus 45 ~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 45 FFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999998865
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.71 E-value=0.0027 Score=43.03 Aligned_cols=22 Identities=23% Similarity=0.145 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=++|.|+||+|||+|..++...
T Consensus 38 ~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999888753
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.65 E-value=0.0031 Score=42.61 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
--++|.|+||+|||+|+.++...
T Consensus 27 sl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 27 SIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 35789999999999999888764
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.0042 Score=44.00 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++++|++|||||.|...+..
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHh
Confidence 689999999999999988765
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=95.57 E-value=0.0039 Score=45.05 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.-.+++.|+||+|||++...+.+
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCeEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999988875
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=95.54 E-value=0.0043 Score=39.68 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.-|++.|++|+||||+.-.|..+.
T Consensus 16 ~gvli~G~sg~GKS~la~~l~~~g 39 (169)
T d1ko7a2 16 VGVLITGDSGIGKSETALELIKRG 39 (169)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHcC
Confidence 468999999999999998888753
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=95.54 E-value=0.003 Score=45.03 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=23.8
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.|.-++|.|=|.-|+||||+++.|...
T Consensus 2 ~m~~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 2 KMGVLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred CccceEEEEECCCCCCHHHHHHHHHHH
Confidence 466789999999999999999998764
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=95.48 E-value=0.0045 Score=44.78 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++-+++++|++|||||-|.++|..
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCcceeeeCCCCccHHHHHHHHHh
Confidence 456799999999999999998764
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.00085 Score=44.02 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=16.3
Q ss_pred EEEcCCCCchHHHHHHhhc
Q psy10443 10 VVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 10 ~v~G~~~~GKtsli~~l~~ 28 (195)
+|+|+.|+|||||+..+..
T Consensus 28 vi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 28 TLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp HHHSCCSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4679999999999998753
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.0045 Score=41.76 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-|+|=|..||||||+++.|..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 588999999999999999875
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=95.31 E-value=0.0048 Score=43.67 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=17.3
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q psy10443 9 CVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~ 28 (195)
+++.|+||+|||.|.+.+.+
T Consensus 126 ~l~~G~pG~GKT~la~ala~ 145 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGE 145 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 45579999999999998876
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.30 E-value=0.0047 Score=41.61 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
=++|.|++|+|||+|+..+....
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987643
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.22 E-value=0.0055 Score=41.46 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=++|.|+||+|||+|...+...
T Consensus 39 ~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 39 ITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998753
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.15 E-value=0.0041 Score=43.54 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.9
Q ss_pred EEEcCCCCchHHHHHHhh
Q psy10443 10 VVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 10 ~v~G~~~~GKtsli~~l~ 27 (195)
+++|+.|+|||+++.++.
T Consensus 28 vlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 28 AIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp EEECCTTTCSTHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 678999999999998773
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=95.08 E-value=0.0077 Score=42.90 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=22.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
..++|.|=|.-|+||||+++.|...
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred ceEEEEEECCccCCHHHHHHHHHHH
Confidence 4579999999999999999998763
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.03 E-value=0.0063 Score=40.48 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
=|+|-|..||||||+++.|..
T Consensus 5 ~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 5 LILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999988764
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.89 E-value=0.0072 Score=40.85 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+++.|++|+|||++++.+..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999988754
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=94.87 E-value=0.0079 Score=42.71 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
-++|.|=|.-|+||||+++.|..
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC
T ss_pred ceEEEEECCcCCCHHHHHHHHHH
Confidence 46799999999999999999875
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.81 E-value=0.0078 Score=40.13 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=17.6
Q ss_pred eEEEEEcCCCCchHHHHHHhh
Q psy10443 7 IKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~ 27 (195)
--++|.|++|+|||+|...+.
T Consensus 27 ~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 27 RSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 357889999999999987754
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.81 E-value=0.0078 Score=40.01 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.9
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
+.+.|++|+|||-|++.+.+.
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999988763
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=0.011 Score=38.99 Aligned_cols=23 Identities=4% Similarity=0.125 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+--+++.|++|+|||+++..+..
T Consensus 24 ~h~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 24 HHALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34589999999999999987765
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.60 E-value=0.0099 Score=40.94 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=17.1
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q psy10443 9 CVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~ 28 (195)
++|.|.||+|||+|+..+..
T Consensus 38 ~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 38 IMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999877653
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.48 E-value=0.0093 Score=43.49 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=17.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhh
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~ 27 (195)
.++ +|+|+.|+|||+++.++.
T Consensus 26 ~l~-~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 26 NFT-SIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp SEE-EEECSTTSSHHHHHHHHH
T ss_pred CEE-EEECCCCCCHHHHHHHHH
Confidence 344 577999999999999874
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=94.31 E-value=0.011 Score=38.77 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+.--+++.|++++|||.++..+..
T Consensus 51 PKkn~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 51 PKKNCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 4556799999999999999988775
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.29 E-value=0.011 Score=43.17 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+|.|+.||||||.+..+...
T Consensus 161 iLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 161 ILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp EEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEcCCCCCccHHHHHHhhh
Confidence 899999999999999998874
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=94.19 E-value=0.0092 Score=41.53 Aligned_cols=16 Identities=31% Similarity=0.654 Sum_probs=13.4
Q ss_pred EEEEEcCCCCchHHHH
Q psy10443 8 KCVVVGDGTVGKTCML 23 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli 23 (195)
.++|+|.+|+||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 3789999999999754
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=94.12 E-value=0.017 Score=40.75 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=19.6
Q ss_pred cce-EEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPI-KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~-~i~v~G~~~~GKtsli~~l~~ 28 (195)
++. .++++|++|+|||.+.+.+..
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred CCceEEEEECCCcchHHHHHHHHHH
Confidence 444 678889999999999987764
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=94.08 E-value=0.011 Score=41.43 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.4
Q ss_pred EEEEEcCCCCchHHHH
Q psy10443 8 KCVVVGDGTVGKTCML 23 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli 23 (195)
.++|.|.+|+||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 3789999999999654
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.03 E-value=0.015 Score=39.91 Aligned_cols=20 Identities=20% Similarity=0.414 Sum_probs=17.0
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q psy10443 9 CVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~ 28 (195)
.+|.|++|+|||+|+-.+..
T Consensus 32 ~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 32 GALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999977653
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.93 E-value=0.016 Score=40.17 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=|++++|++|+|||+|+..+...
T Consensus 44 Qr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 44 QRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHH
T ss_pred CeeeEeCCCCCCHHHHHHHHHHH
Confidence 38999999999999999888763
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.78 E-value=0.019 Score=38.61 Aligned_cols=21 Identities=14% Similarity=0.006 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-|.+.|..||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998864
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=93.42 E-value=0.021 Score=41.89 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=18.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++|+|.+|+|||+++..+..
T Consensus 52 H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCcHHHHHHHHHH
Confidence 589999999999999876654
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.37 E-value=0.031 Score=33.27 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=22.7
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+++-|-|++-|.+|+||++|.+.|..
T Consensus 3 ~kqgf~i~~tg~~~~gk~~ia~al~~ 28 (122)
T d1g8fa3 3 PKQGFSIVLGNSLTVSREQLSIALLS 28 (122)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred CccceEEEEeCCCCCCHHHHHHHHHH
Confidence 35678999999999999999988864
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.90 E-value=0.15 Score=31.47 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=22.9
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
|.+....||.|+|..++|.+........+
T Consensus 1 m~~~~~~KI~IiGaG~vG~~~a~~l~~~~ 29 (148)
T d1ldna1 1 MKNNGGARVVVIGAGFVGASYVFALMNQG 29 (148)
T ss_dssp CTTTTSCEEEEECCSHHHHHHHHHHHHHT
T ss_pred CCCCCCCeEEEECcCHHHHHHHHHHHhcC
Confidence 88889999999999889987665554443
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=92.88 E-value=0.044 Score=37.59 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++--+++.|++++|||+|++.+..
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHH
Confidence 4566788999999999999998876
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=92.71 E-value=0.034 Score=39.95 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.0
Q ss_pred EEEEEcCCCCchHHHHHH
Q psy10443 8 KCVVVGDGTVGKTCMLIS 25 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~ 25 (195)
-.+|.|.||+|||+++..
T Consensus 165 ~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 165 ISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp EEEEECCTTSTHHHHHHH
T ss_pred eEEEEcCCCCCceehHHH
Confidence 367889999999998744
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.66 E-value=0.036 Score=37.98 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=18.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
=+.+.|++++|||+|+-.+..
T Consensus 56 itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 56 IVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEecCCCcHHHHHHHHHHH
Confidence 467899999999999988765
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=92.10 E-value=0.047 Score=37.23 Aligned_cols=71 Identities=7% Similarity=0.078 Sum_probs=38.0
Q ss_pred EEEEEEeCCCCcccccc-CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcE-EEEeeCCCcccch
Q psy10443 54 VSLGLWDTAGQEDYDRL-RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPI-ILVGTKIDLREDR 126 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~-vvv~nK~D~~~~~ 126 (195)
+.+.++|+|+....... .......+|.++++.+. +..++..... ....+... ..+.++ -++.|+.+.....
T Consensus 116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~-~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~ 190 (269)
T d1cp2a_ 116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANN-ISKGIQKYAKSGGVRLGGIICNSRKVANEY 190 (269)
T ss_dssp CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHH-HHHHHHHHBTTBBCEEEEEEEECCSSSCCH
T ss_pred CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHH-HHHHHHhhccccceeccceEEeeecCCCcc
Confidence 34668888764322211 11223457888777775 4555655443 44444432 223333 4778998876543
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.68 E-value=0.059 Score=37.05 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+.++|.+|+|||+|+..+..+
T Consensus 70 r~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 70 KIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 8999999999999999888653
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=91.50 E-value=0.057 Score=36.52 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
...|++.|++|+||+.+.+.+-.
T Consensus 23 ~~pvlI~Ge~GtGK~~~A~~ih~ 45 (247)
T d1ny5a2 23 ECPVLITGESGVGKEVVARLIHK 45 (247)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCcCHHHHHHHHHH
Confidence 44689999999999999887754
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=91.22 E-value=0.19 Score=31.91 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=28.9
Q ss_pred CCCCCccEEEEEEeCCCh--hcHHHHH-------HhhHHHHhhhCC-CCcEEEEeeCCCc
Q psy10443 73 LSYPQTDVFLICYSVVSP--SSFDNVT-------SKWYPELKHHCP-DAPIILVGTKIDL 122 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~--~s~~~~~-------~~~~~~~~~~~~-~~p~vvv~nK~D~ 122 (195)
..+.++|.+|++-..... .+..++. ..+...+.++.+ +..++++.|=.|.
T Consensus 96 ~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~ 155 (175)
T d7mdha1 96 EVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT 155 (175)
T ss_dssp HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred hhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHH
Confidence 346789999998766432 2222221 123444555554 5667777776664
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=90.17 E-value=0.061 Score=37.54 Aligned_cols=14 Identities=36% Similarity=0.430 Sum_probs=13.0
Q ss_pred EEEcCCCCchHHHH
Q psy10443 10 VVVGDGTVGKTCML 23 (195)
Q Consensus 10 ~v~G~~~~GKtsli 23 (195)
+++|.+|+|||||-
T Consensus 18 lfFGLSGTGKTTLs 31 (313)
T d2olra1 18 VFFGLSGTGKTTLS 31 (313)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEEccCCCCcccce
Confidence 68999999999987
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=89.69 E-value=0.068 Score=37.44 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=13.5
Q ss_pred EEEEcCCCCchHHHH
Q psy10443 9 CVVVGDGTVGKTCML 23 (195)
Q Consensus 9 i~v~G~~~~GKtsli 23 (195)
-+++|.+|+|||||-
T Consensus 17 alffGLSGTGKTTLs 31 (318)
T d1j3ba1 17 AVFFGLSGTGKTTLS 31 (318)
T ss_dssp EEEEECTTSCHHHHT
T ss_pred EEEEccCCCCccccc
Confidence 488999999999976
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=89.38 E-value=0.078 Score=37.16 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=13.6
Q ss_pred EEEEcCCCCchHHHH
Q psy10443 9 CVVVGDGTVGKTCML 23 (195)
Q Consensus 9 i~v~G~~~~GKtsli 23 (195)
-+++|.+|+|||||-
T Consensus 17 alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 17 TVFFGLSGTGKTTLS 31 (323)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEccCCCCcccce
Confidence 369999999999998
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=89.35 E-value=0.12 Score=35.58 Aligned_cols=69 Identities=7% Similarity=0.029 Sum_probs=33.9
Q ss_pred EEEEEEeCCCCccccccCCC-CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhh--hCCCCcE-EEEeeCCCccc
Q psy10443 54 VSLGLWDTAGQEDYDRLRPL-SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPI-ILVGTKIDLRE 124 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~p~-vvv~nK~D~~~ 124 (195)
+.+.++|+|+.......... ....++.++++... +..++..+.. ....+.. ..++.++ .+|.|+.+...
T Consensus 119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~-~~~~i~~~~~~~~~~~~gvv~n~~~~~~ 191 (289)
T d2afhe1 119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANN-ISKGIVKYANSGSVRLGGLICNSRNTDR 191 (289)
T ss_dssp CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHH-HHHHHHHHHTTSCCEEEEEEEECCCCTT
T ss_pred CCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHH-HHHHHHhhhhcccccccceeehhhcchh
Confidence 34558888654322211111 12345666666553 4555555443 3333332 2344554 37789887544
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=89.35 E-value=0.12 Score=33.59 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=16.9
Q ss_pred EEEEEcCC-CCchHHHHHHhhc
Q psy10443 8 KCVVVGDG-TVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~-~~GKtsli~~l~~ 28 (195)
|+.|.|-. ||||||+.-.|..
T Consensus 3 ~~~i~gt~~GVGKTtvs~~La~ 24 (224)
T d1byia_ 3 RYFVTGTDTEVGKTVASCALLQ 24 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCccHHHHHHHHHH
Confidence 68899995 9999998855543
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=89.30 E-value=0.1 Score=33.38 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=18.9
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+|+|...||||.+..++...
T Consensus 2 iLVtGGarSGKS~~AE~l~~~ 22 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCccHHHHHHHHHhc
Confidence 689999999999999998754
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=89.25 E-value=0.11 Score=35.57 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=16.8
Q ss_pred CCcceEEEEEcCCCCchHHHHHHh
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISY 26 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l 26 (195)
+++. -|++.|-.||||||+.-.+
T Consensus 6 ~~p~-~i~~sGKGGVGKTTvaa~l 28 (296)
T d1ihua1 6 NIPP-YLFFTGKGGVGKTSISCAT 28 (296)
T ss_dssp SCCS-EEEEECSTTSSHHHHHHHH
T ss_pred CCCe-EEEEECCCcChHHHHHHHH
Confidence 4444 4568999999999976443
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.21 E-value=0.15 Score=33.13 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.....+++.|++|+|||++...+..
T Consensus 13 ~~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 13 SEGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988775
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=89.04 E-value=0.12 Score=35.35 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-+.+.|++++|||+|+..+..
T Consensus 59 itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 59 ITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEecCCccchHHHHHHHHH
Confidence 467899999999999988765
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.96 E-value=0.13 Score=35.24 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=17.7
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
=+.+.|++++|||+|+..+..
T Consensus 62 i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 62 VIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEecCCCcHHHHHHHHHHH
Confidence 467899999999999977764
|
| >d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Pyruvate oxidase and decarboxylase, middle domain domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=88.76 E-value=0.73 Score=28.94 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=40.4
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
.+|+.++....+.....+... +.|+++++........ .++..+|+...+ +|++.+
T Consensus 2 ~sd~~~l~~~v~~~~~~l~~A--krPvIi~G~g~~~~~a----------------~~~l~~lae~~~-~Pv~tt 56 (175)
T d1zpda1 2 ASDEASLNAAVDETLKFIANR--DKVAVLVGSKLRAAGA----------------EEAAVKFTDALG-GAVATM 56 (175)
T ss_dssp CCCHHHHHHHHHHHHHHHTTC--SCEEEEECTTTTTTTC----------------HHHHHHHHHHHC-CCEEEE
T ss_pred CCChHHHHHHHHHHHHHHHcC--CCEEEEECcCccccch----------------HHHHHHHHHhhc-eeEEec
Confidence 367777777766666666554 7899999998875443 467889999998 677654
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=88.65 E-value=0.13 Score=34.97 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=14.3
Q ss_pred eEEEE-EcCCCCchHHHHHHh
Q psy10443 7 IKCVV-VGDGTVGKTCMLISY 26 (195)
Q Consensus 7 ~~i~v-~G~~~~GKtsli~~l 26 (195)
.+|++ .|-.||||||+.-.|
T Consensus 20 ~~iii~sGKGGVGKTT~a~nL 40 (279)
T d1ihua2 20 HGLIMLMGKGGVGKTTMAAAI 40 (279)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 34444 599999999986443
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.47 E-value=0.15 Score=34.10 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=17.3
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q psy10443 9 CVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~ 28 (195)
+++.|+..+|||++++.+.-
T Consensus 44 ~iiTGpN~~GKSt~lk~i~l 63 (234)
T d1wb9a2 44 LIITGPNMGGKSTYMRQTAL 63 (234)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEeccCchhhHHHHHHHHH
Confidence 68899999999999987643
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.06 E-value=0.11 Score=35.82 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=|++++|.+|+|||+|+..+..+
T Consensus 69 Qr~~If~~~g~GKt~ll~~~~~~ 91 (285)
T d2jdia3 69 QRELIIGDRQTGKTSIAIDTIIN 91 (285)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEeecCCCCChHHHHHHHHHh
Confidence 38899999999999998777653
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=87.98 E-value=0.16 Score=33.65 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=17.2
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q psy10443 9 CVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~ 28 (195)
+++.|+..+|||++++.+.-
T Consensus 38 ~iiTGpN~~GKSt~lk~i~l 57 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQTAL 57 (224)
T ss_dssp EEEESCSSSSHHHHHHHHHH
T ss_pred EEEECCCccccchhhhhhHH
Confidence 68999999999999987543
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=86.58 E-value=0.2 Score=29.98 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=16.8
Q ss_pred ceEE-EEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKC-VVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i-~v~G~~~~GKtsli~~l~~ 28 (195)
.+++ ++.++.|+|||.++-.+..
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~~ 30 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAYA 30 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 3444 6789999999988865543
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=85.92 E-value=0.18 Score=34.56 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+.++|.+|+|||+|+..+...
T Consensus 69 r~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 69 RELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp BCBEEESSSSSHHHHHHHHHHT
T ss_pred eEeeccCCCCChHHHHHHHHhh
Confidence 7899999999999999776543
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=84.62 E-value=0.25 Score=32.95 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=20.3
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhh
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~ 27 (195)
.+.++...++.|+.|+|||-+.-+..
T Consensus 72 ~~~~~~~~LL~GdvGsGKT~V~~~a~ 97 (233)
T d2eyqa3 72 CQPLAMDRLVCGDVGFGKTEVAMRAA 97 (233)
T ss_dssp HSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred hccCccCeEEEcCCCCCcHHHHHHHH
Confidence 34567789999999999997775544
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.10 E-value=0.13 Score=35.09 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=19.4
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHh
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISY 26 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l 26 (195)
.+.++.+-++.|+.|||||-+.-..
T Consensus 100 ~~~~~m~rLL~GdvGSGKT~Va~~a 124 (264)
T d1gm5a3 100 ISEKPMNRLLQGDVGSGKTVVAQLA 124 (264)
T ss_dssp HSSSCCCCEEECCSSSSHHHHHHHH
T ss_pred hccCcceeeeeccccccccHHHHHH
Confidence 3456778899999999999766443
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.58 E-value=1.9 Score=27.92 Aligned_cols=65 Identities=12% Similarity=0.007 Sum_probs=42.0
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEE-EEeeCCCccc
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII-LVGTKIDLRE 124 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~v-vv~nK~D~~~ 124 (195)
+.+.++|+++.... .....+..+|.++++...+ ..++..... ....+++. ++|+. +|.|+.+...
T Consensus 112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~-~~~~~~~~--~~~~~giv~N~~~~~~ 177 (237)
T d1g3qa_ 112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMK-VGIVLKKA--GLAILGFVLNRYGRSD 177 (237)
T ss_dssp CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHH-HHHHHHHT--TCEEEEEEEEEETSCT
T ss_pred CCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhH-HHHHHhhh--hhhhhhhhhccccccc
Confidence 45778898875432 2233456799999998864 555555553 45555543 66765 7889998654
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=82.23 E-value=0.44 Score=28.89 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=14.1
Q ss_pred EEEcCCCCchHH-HHHHhh
Q psy10443 10 VVVGDGTVGKTC-MLISYT 27 (195)
Q Consensus 10 ~v~G~~~~GKts-li~~l~ 27 (195)
+++|+=.||||| |++++.
T Consensus 6 ~i~GpMfsGKTteLi~~~~ 24 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRLH 24 (139)
T ss_dssp EEECSTTSCHHHHHHHHHH
T ss_pred EEEccccCHHHHHHHHHHH
Confidence 568999999998 665543
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=81.95 E-value=0.28 Score=29.05 Aligned_cols=18 Identities=22% Similarity=0.122 Sum_probs=13.9
Q ss_pred cceEEEEEcCCCCchHHH
Q psy10443 5 RPIKCVVVGDGTVGKTCM 22 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsl 22 (195)
+.-++++.+++|+|||..
T Consensus 6 ~~~~~il~~~tGsGKT~~ 23 (140)
T d1yksa1 6 KGMTTVLDFHPGAGKTRR 23 (140)
T ss_dssp TTCEEEECCCTTSSTTTT
T ss_pred cCCcEEEEcCCCCChhHH
Confidence 345678889999999933
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.39 E-value=0.55 Score=30.60 Aligned_cols=62 Identities=11% Similarity=0.010 Sum_probs=35.2
Q ss_pred EEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcc
Q psy10443 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLR 123 (195)
Q Consensus 56 l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~ 123 (195)
+.++|+|+.... .....+..+|.+++|...+ ..+...... ........ +.+ +-+|+|+.+..
T Consensus 112 ~viiD~~~~~~~--~~~~~l~~ad~v~~v~~~~-~~~~~~~~~-~~~~~~~~--~~~~~~iv~N~~~~~ 174 (232)
T d1hyqa_ 112 ILLLDAPAGLER--SAVIAIAAAQELLLVVNPE-ISSITDGLK-TKIVAERL--GTKVLGVVVNRITTL 174 (232)
T ss_dssp EEEEECCSSSSH--HHHHHHHHSSEEEEEECSS-HHHHHHHHH-HHHHHHHH--TCEEEEEEEEEECTT
T ss_pred eeeecccccccc--hhHHHhhhhheeeeecccc-ccchhhhhh-hhhhhhhc--ccccccccccccccc
Confidence 568888765432 2223445689999888864 444444432 33444443 333 44778998643
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=80.24 E-value=0.56 Score=29.86 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=13.5
Q ss_pred EEEEEcCCCCchHHHH
Q psy10443 8 KCVVVGDGTVGKTCML 23 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli 23 (195)
+++++++.|+|||.+.
T Consensus 25 n~lv~~pTGsGKT~i~ 40 (200)
T d1wp9a1 25 NCLIVLPTGLGKTLIA 40 (200)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred CeEEEeCCCCcHHHHH
Confidence 6789999999999643
|