Psyllid ID: psy10472

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MAGNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENTRK
Secondary Structure (PSIPRED)
cccccccccccccccEEEEccccEEEEEccccccHHHHHHHHHHHccccccEEEEccEEccccccccccccccEEEccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccEEEEEEcccccccccEEEEEEccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEccEEEEEccccEEEEEccccccHHHHHHHHHHHccccccEEEEccccHHHccHHHHHHHcEEEEccccEEEcccHHHHHHcccccccHHHHHHHHHHHcHHHHHHHcccccccHHHHHHHHHHHHHHHccccEEEEEEEcEEEccccEEEEEcccEEEEEcccHHHHHc
Coil and Loop (DISEMBL)
MAGNLRRLKTILKDfnlripagqKVAIVGSSGNGKSTIVALLERFydvssgnitisgvdlkhldgtwlrgnviglinqepvlfatsvrenirygdssvsdEQIEEAAKLANAHgfisefpsgaldneSEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLgqhentrk
Flexible Loop (DISEMBL)
MAGNLRRLKTILkdfnlripagqkvaivgssgnGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEmlgqhentrk
Low Complexity Region (SEG)
MAGNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENTRK
Disordered region (IsUnstruct)
******RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYG*****************AHGFIS*************LVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEML********
Disordered Region (DISOPRED)
MAGNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE*TR*
Disordered Region (DISEMBL)
MAGNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENTRK
Disordered Region (DISPRO)
MAGNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQ******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENTRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
Q9CXJ4	717	ATP-binding cassette sub-	yes	N/A	0.939	0.237	0.469	3e-47
Q56A55	714	ATP-binding cassette sub-	yes	N/A	0.911	0.231	0.495	5e-47
Q5RKI8	714	ATP-binding cassette sub-	yes	N/A	0.922	0.233	0.471	5e-47
B2GUP8	688	ATP-binding cassette sub-	yes	N/A	0.922	0.242	0.471	7e-47
Q9NUT2	735	ATP-binding cassette sub-	yes	N/A	0.939	0.231	0.454	3e-45
Q5RFQ9	718	ATP-binding cassette sub-	yes	N/A	0.939	0.236	0.454	5e-45
Q54W24	767	ABC transporter B family	yes	N/A	0.906	0.213	0.485	7e-45
Q9LSJ6	1240	ABC transporter B family	yes	N/A	0.961	0.140	0.449	4e-43
Q9LSJ2	1229	ABC transporter B family	no	N/A	0.911	0.134	0.454	3e-42
Q9LHD1	1240	ABC transporter B family	no	N/A	0.933	0.136	0.443	4e-42

>sp|Q9CXJ4|ABCB8_MOUSE ATP-binding cassette sub-family B member 8, mitochondrial OS=Mus musculus GN=Abcb8 PE=2 SV=1

 Score =  187 bits (475), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 99/211 (46%), Positives = 130/211 (61%), Gaps = 41/211 (19%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +LKDF L++P+G+ VA+VG SG GK+T+ +LLERFYD  +G++T+ G DL+ L+ +WLRG
Sbjct: 471 VLKDFTLKLPSGKIVALVGQSGGGKTTVASLLERFYDPEAGSVTLDGHDLRTLNPSWLRG 530

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
            VIG I+QEPVLFAT++ ENIR+G    SDE++  AA+ ANAH FIS FP G        
Sbjct: 531 QVIGFISQEPVLFATTIMENIRFGKLDASDEEVYTAAREANAHEFISSFPDGYSTVVGER 590

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD ESE++VQ AL+ A  GRTVL+IAH
Sbjct: 591 GTTLSGGQKQRLAIARALIKQPTVLILDEATSALDAESERVVQEALDRASAGRTVLVIAH 650

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHENTRK 181
           RLSTV+ A  I+V+  GQ+ E  G HE   K
Sbjct: 651 RLSTVRAAHSIIVMANGQVCEA-GTHEELLK 680

Mus musculus (taxid: 10090)

>sp|Q56A55|ABCB8_DANRE ATP-binding cassette sub-family B member 8, mitochondrial OS=Danio rerio GN=abcb8 PE=2 SV=1

 Score =  187 bits (474), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 102/206 (49%), Positives = 126/206 (61%), Gaps = 41/206 (19%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           ILK F+L +P  + VAIVG SG GKST+ ALLERFYD SSG + + G+D++ LD +WLRG
Sbjct: 487 ILKHFSLTLPPCKTVAIVGESGGGKSTVAALLERFYDPSSGVVMLDGLDIRTLDPSWLRG 546

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
           +VIG I+QEPVLF TSV ENIR+G  S +D ++  AAK ANAH FI+ F  G        
Sbjct: 547 HVIGFISQEPVLFGTSVMENIRFGKPSATDAEVVSAAKQANAHNFITGFADGYNTVVGER 606

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD ESE++VQ AL+ A  GRTVL+IAH
Sbjct: 607 GVTLSGGQKQRIAIARALVKNPSILILDEATSALDAESERVVQEALDRATTGRTVLIIAH 666

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQH 176
           RLST+Q ADLI V+  G+IVE  G H
Sbjct: 667 RLSTIQAADLICVMSNGRIVEA-GTH 691

Danio rerio (taxid: 7955)

>sp|Q5RKI8|ABCB8_RAT ATP-binding cassette sub-family B member 8, mitochondrial OS=Rattus norvegicus GN=Abcb8 PE=2 SV=1

 Score =  186 bits (473), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 98/208 (47%), Positives = 128/208 (61%), Gaps = 41/208 (19%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +LK+F L++P G+ VA+VG SG GK+T+ +LLERFYD ++G +T+ G DL+ LD +WLRG
Sbjct: 471 VLKNFTLKLPPGKIVALVGQSGGGKTTVASLLERFYDPTAGVVTLDGHDLRTLDPSWLRG 530

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
            VIG I+QEPVLFAT++ ENIR+G    SDE++  AA+ ANAH FIS FP G        
Sbjct: 531 QVIGFISQEPVLFATTIMENIRFGKLDASDEEVYTAARKANAHEFISSFPDGYSTVVGER 590

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD ESE++VQ AL+ A  GRTVL+IAH
Sbjct: 591 GTTLSGGQKQRLAIARALIKRPTVLILDEATSALDAESERIVQEALDRASAGRTVLVIAH 650

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHEN 178
           RLSTV+ A  I+V+  GQ+ E  G HE 
Sbjct: 651 RLSTVRAAHSIIVMANGQVCEA-GTHEE 677

Rattus norvegicus (taxid: 10116)

>sp|B2GUP8|ABCB8_XENTR ATP-binding cassette sub-family B member 8, mitochondrial OS=Xenopus tropicalis GN=abcb8 PE=2 SV=1

 Score =  186 bits (472), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 98/208 (47%), Positives = 123/208 (59%), Gaps = 41/208 (19%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +L+ F+LRIP G+ VA+VG SG GKST+ ALLERFYD + G + + GVD++ LD +WLRG
Sbjct: 459 VLRSFDLRIPHGKTVALVGQSGGGKSTVAALLERFYDPTEGAVQLDGVDIRILDPSWLRG 518

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
            VIG INQEPVLF T++ ENIR+G    +D ++ EAA  ANA  FI  FP G        
Sbjct: 519 EVIGFINQEPVLFGTTIIENIRFGRPDATDAEVHEAAIQANADSFIRSFPEGYNTMLGER 578

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD ESE+ VQ AL+ A  GRTVL+IAH
Sbjct: 579 GVTLSGGQKQRVAIARALLKDPKILILDEATSALDTESERAVQVALDRARSGRTVLVIAH 638

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHEN 178
           RLST+  AD IVVL  GQ+ E  G H++
Sbjct: 639 RLSTISEADFIVVLSKGQVAE-FGTHQD 665

Xenopus tropicalis (taxid: 8364)

>sp|Q9NUT2|ABCB8_HUMAN ATP-binding cassette sub-family B member 8, mitochondrial OS=Homo sapiens GN=ABCB8 PE=1 SV=3

 Score =  181 bits (458), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 96/211 (45%), Positives = 126/211 (59%), Gaps = 41/211 (19%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +LKDF L +P G+ VA+VG SG GK+T+ +LLERFYD ++G + + G DL+ LD +WLRG
Sbjct: 489 VLKDFTLTLPPGKIVALVGQSGGGKTTVASLLERFYDPTAGVVMLDGRDLRTLDPSWLRG 548

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
            V+G I+QEPVLF T++ ENIR+G    SDE++  AA+ ANAH FI+ FP G        
Sbjct: 549 QVVGFISQEPVLFGTTIMENIRFGKLEASDEEVYTAAREANAHEFITSFPEGYNTVVGER 608

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD ESE++VQ AL+ A  GRTVL+IAH
Sbjct: 609 GTTLSGGQKQRLAIARALIKQPTVLILDEATSALDAESERVVQEALDRASAGRTVLVIAH 668

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHENTRK 181
           RLSTV+ A  IVV+  G++ E  G HE   K
Sbjct: 669 RLSTVRGAHCIVVMADGRVWEA-GTHEELLK 698

Homo sapiens (taxid: 9606)

>sp|Q5RFQ9|ABCB8_PONAB ATP-binding cassette sub-family B member 8, mitochondrial OS=Pongo abelii GN=ABCB8 PE=2 SV=1

 Score =  180 bits (456), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 96/211 (45%), Positives = 126/211 (59%), Gaps = 41/211 (19%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +LKDF L +P G+ VA+VG SG GK+T+ +LLERFYD ++G + + G DL+ LD +WLRG
Sbjct: 472 VLKDFTLTLPPGKIVALVGQSGGGKTTVASLLERFYDPTAGVVMLDGRDLRTLDPSWLRG 531

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
            V+G I+QEPVLF T++ ENIR+G    SDE++  AA+ ANAH FI+ FP G        
Sbjct: 532 QVVGFISQEPVLFGTTIMENIRFGKLEASDEEVYAAAREANAHEFITSFPEGYNTIVGER 591

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD ESE++VQ AL+ A  GRTVL+IAH
Sbjct: 592 GTTLSGGQKQRLAIARALIKQPTVLILDEATSALDAESERVVQEALDRASAGRTVLVIAH 651

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHENTRK 181
           RLSTV+ A  IVV+  G++ E  G HE   K
Sbjct: 652 RLSTVRGAHRIVVMADGRVWEA-GTHEELLK 681

Pongo abelii (taxid: 9601)

>sp|Q54W24|ABCB4_DICDI ABC transporter B family member 4 OS=Dictyostelium discoideum GN=abcB4 PE=3 SV=1

 Score =  179 bits (455), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 100/206 (48%), Positives = 126/206 (61%), Gaps = 42/206 (20%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +L   NL +  GQ VA+ GSSG GKSTI  LLERFYD+S+G+ITI G  +K L+  WLR 
Sbjct: 541 VLNGLNLTLKPGQVVALAGSSGGGKSTIAGLLERFYDISNGDITIDGYSIKQLNAKWLRS 600

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
             IG+++QEP LFAT++ EN+RYG+ + ++++I EAAKLANAH FIS FP G        
Sbjct: 601 R-IGIVSQEPSLFATTILENLRYGNPNATEDEIIEAAKLANAHQFISNFPKGYETIVGER 659

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD++SE LVQ AL++  KGRT L+IAH
Sbjct: 660 GVQLSGGQKQRIAIARAILKNPQIIILDEATSALDSQSELLVQTALDNLMKGRTTLVIAH 719

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQH 176
           RLSTVQNADLI VL  G+I E  G H
Sbjct: 720 RLSTVQNADLIGVLSHGKIAE-FGNH 744

Dictyostelium discoideum (taxid: 44689)

>sp|Q9LSJ6|AB17B_ARATH ABC transporter B family member 17 OS=Arabidopsis thaliana GN=ABCB17 PE=3 SV=1

 Score =  173 bits (439), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 97/216 (44%), Positives = 129/216 (59%), Gaps = 42/216 (19%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
           R   TI  D  L+IPAG+ VA+VG SG+GKST+++LL+RFYD  +G I I GV +  L  
Sbjct: 371 RPETTIFDDLCLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGVSIDKLQV 430

Query: 66  TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--- 122
            WLR   +GL++QEPVLFATS+ ENI +G    S +++ EAAK +NAH FIS+FP G   
Sbjct: 431 NWLRSQ-MGLVSQEPVLFATSITENILFGKEDASLDEVVEAAKASNAHTFISQFPLGYKT 489

Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
                                                ALD+ESE++VQ +L++A  GRT 
Sbjct: 490 QVGERGVQMSGGQKQRIAIARAIIKSPKILLLDEATSALDSESERVVQESLDNASIGRTT 549

Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENTRK 181
           ++IAHRLST++NAD+I V+  GQIVE  G HE   K
Sbjct: 550 IVIAHRLSTIRNADVICVIHNGQIVET-GSHEELLK 584

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSJ2|AB22B_ARATH ABC transporter B family member 22 OS=Arabidopsis thaliana GN=ABCB22 PE=3 SV=2

 Score =  171 bits (432), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 124/207 (59%), Gaps = 42/207 (20%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           I  D  LRIP+G+ VA+VG SG+GKST+++LL+RFYD   G I I GV +K L   WLR 
Sbjct: 363 IFDDLCLRIPSGKSVALVGGSGSGKSTVISLLQRFYDPIVGEILIDGVSIKKLQVKWLRS 422

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
             +GL++QEP LFATS+ ENI +G    S +++ EAAK +NAH FIS+FP G        
Sbjct: 423 Q-MGLVSQEPALFATSIEENILFGKEDASFDEVVEAAKSSNAHDFISQFPLGYKTQVGER 481

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD+ESE++VQ AL++A  GRT ++IAH
Sbjct: 482 GVQMSGGQKQRISIARAIIKSPTLLLLDEATSALDSESERVVQEALDNATIGRTTIVIAH 541

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
           RLST++N D+I V + GQIVE  G HE
Sbjct: 542 RLSTIRNVDVICVFKNGQIVET-GSHE 567

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHD1|AB15B_ARATH ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1

 Score =  170 bits (431), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 94/212 (44%), Positives = 130/212 (61%), Gaps = 43/212 (20%)

Query: 7   RLKT-ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
           RL+T I  DF LR+P+G+ VA+VG SG+GKST+++LL+RFYD  +G I I GV +  L  
Sbjct: 371 RLETSIFDDFCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPLAGEILIDGVSIDKLQV 430

Query: 66  TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--- 122
            WLR   +GL++QEP LFAT+++ENI +G    S + + EAAK +NAH FIS+ P+G   
Sbjct: 431 KWLRSQ-MGLVSQEPALFATTIKENILFGKEDASMDDVVEAAKASNAHNFISQLPNGYET 489

Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
                                                ALD+ESE++VQ ALE+A  GRT 
Sbjct: 490 QVGERGVQMSGGQKQRIAIARAIIKSPTILLLDEATSALDSESERVVQEALENASIGRTT 549

Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           ++IAHRLST++NAD+I V++ G IVE  G H+
Sbjct: 550 ILIAHRLSTIRNADVISVVKNGHIVET-GSHD 580

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
91086531	599	PREDICTED: similar to CG1824 CG1824-PA [	0.972	0.293	0.546	8e-57
357618526	639	hypothetical protein KGM_16343 [Danaus p	0.983	0.278	0.529	1e-54
307213320	375	ATP-binding cassette sub-family B member	0.911	0.44	0.538	1e-52
193632092	676	PREDICTED: ATP-binding cassette sub-fami	0.966	0.258	0.532	2e-52
340718242	693	PREDICTED: LOW QUALITY PROTEIN: ATP-bind	0.939	0.245	0.535	2e-52
307190517	777	ATP-binding cassette sub-family B member	0.966	0.225	0.506	3e-52
350427088	695	PREDICTED: ATP-binding cassette sub-fami	0.939	0.244	0.526	6e-52
328781281	682	PREDICTED: ATP-binding cassette sub-fami	0.911	0.241	0.543	8e-52
383858748	694	PREDICTED: ATP-binding cassette sub-fami	0.939	0.244	0.530	1e-51
332020849	695	ATP-binding cassette sub-family B member	0.911	0.237	0.524	3e-51

>gi|91086531|ref|XP_972133.1| PREDICTED: similar to CG1824 CG1824-PA [Tribolium castaneum] gi|270010345|gb|EFA06793.1| hypothetical protein TcasGA2_TC009730 [Tribolium castaneum]

 Score =  224 bits (572), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 118/216 (54%), Positives = 147/216 (68%), Gaps = 40/216 (18%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
           RR + +LK+F+L+IP+G+ +AIVG+SGNGKST+VAL+ERFYDV+ G++T+ G D+K LD 
Sbjct: 367 RRQQYVLKNFDLKIPSGKTLAIVGASGNGKSTVVALIERFYDVNCGSVTLDGHDIKTLDP 426

Query: 66  TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--- 122
           +WLR  V+GLI+QEP+LF TS+ ENIRYG  S SDE+++EAAKLANAH FIS FP G   
Sbjct: 427 SWLRQRVLGLISQEPILFGTSIVENIRYGLPSASDEEVKEAAKLANAHDFISSFPQGYDT 486

Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
                                                ALD ESEK+VQ ALE+A KGRTV
Sbjct: 487 MVGERGVTLSGGQKQRIAIARALLKNPTVLLLDEATSALDTESEKVVQNALENAKKGRTV 546

Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENTRK 181
           ++IAHRLSTVQNAD+IVVL  G IVEM    E TRK
Sbjct: 547 VVIAHRLSTVQNADIIVVLNKGVIVEMGTHEELTRK 582

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357618526|gb|EHJ71471.1| hypothetical protein KGM_16343 [Danaus plexippus]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 116/219 (52%), Positives = 143/219 (65%), Gaps = 41/219 (18%)

Query: 3   GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62
           G++     IL++FNL+IPAG+ VAIVG+SGNGKSTI ALLERFYDV+ G++TI GVD+K 
Sbjct: 399 GDIEFKDVILRNFNLKIPAGKTVAIVGTSGNGKSTIAALLERFYDVTQGSVTIDGVDVKE 458

Query: 63  LDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG 122
           +D  WLRG  +GLI+QEPVLFAT+V ENIRYG    SD+++ +AAK ANA GFI  FP G
Sbjct: 459 MDPRWLRGRALGLISQEPVLFATNVMENIRYGRPQASDDEVYQAAKTANADGFIRNFPDG 518

Query: 123 ----------------------------------------ALDNESEKLVQAALESACKG 142
                                                   ALD  SE++VQAALE A  G
Sbjct: 519 YNTMVGERGMALSGGQKQRIAIARAVLKNPPVMILDEATSALDGASEQIVQAALERASVG 578

Query: 143 RTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENTRK 181
           RTVL+IAHRLSTV++AD+IVVL  GQIVEM G H+  +K
Sbjct: 579 RTVLVIAHRLSTVRSADVIVVLNKGQIVEM-GTHDQLKK 616

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213320|gb|EFN88772.1| ATP-binding cassette sub-family B member 8, mitochondrial [Harpegnathos saltator]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/206 (53%), Positives = 135/206 (65%), Gaps = 41/206 (19%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           ILKDFNL IPAG+ VAIVG+SGNGKST+ ALLERFYDV  G+ITI G D+K L+ ++LRG
Sbjct: 149 ILKDFNLHIPAGKTVAIVGTSGNGKSTVAALLERFYDVDEGSITIDGRDIKSLNSSYLRG 208

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
           +V+G INQEP LFATS+ ENIRYG    +DE++ EAAK ANAH FI +FP G        
Sbjct: 209 SVLGFINQEPTLFATSIMENIRYGKQDATDEEVVEAAKEANAHDFIIKFPDGYATEVGER 268

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD ESE++VQ A+E+  KGRTVL+IAH
Sbjct: 269 GAQLSGGQKQRVAIARALLKQPSVLILDEATSALDYESERVVQKAIENVTKGRTVLVIAH 328

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQH 176
           RLST++ AD+IVVLQ G I E +G H
Sbjct: 329 RLSTIKGADIIVVLQRGVIAE-IGSH 353

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193632092|ref|XP_001942699.1| PREDICTED: ATP-binding cassette sub-family B member 8, mitochondrial-like [Acyrthosiphon pisum]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 115/216 (53%), Positives = 138/216 (63%), Gaps = 41/216 (18%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
           R  + ILKDFNL +P G+ VA+VGSSGNGKSTI ALL RFYDV+SG+I I GVD+K+LD 
Sbjct: 442 RPEQVILKDFNLTLPPGKVVAVVGSSGNGKSTIAALLMRFYDVNSGSIIIDGVDIKNLDQ 501

Query: 66  TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--- 122
           TWLR  VIGLINQEP+LFA S+ ENIRYG    +D ++ EAAK+ANA  FI+ FP+G   
Sbjct: 502 TWLRKRVIGLINQEPILFAMSILENIRYGKPEATDIEVIEAAKIANADSFITSFPNGYNT 561

Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
                                                ALD ESE  VQ+ALES   G+TV
Sbjct: 562 IVGERGVTVSGGQKQRIAIARAILKNPAILILDEATSALDTESEMHVQSALESVANGKTV 621

Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENTRK 181
           L+IAHRLSTV+NAD+IVVL  G+IVE+ G H    K
Sbjct: 622 LVIAHRLSTVKNADVIVVLNKGEIVEV-GDHNTLLK 656

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718242|ref|XP_003397580.1| PREDICTED: LOW QUALITY PROTEIN: ATP-binding cassette sub-family B member 8, mitochondrial-like [Bombus terrestris]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/211 (53%), Positives = 138/211 (65%), Gaps = 41/211 (19%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
           R+   ILK+FNL IPAG+ VAIVGSSGNGKSTI ALLERFYDV++G+ITI G DL+ L+ 
Sbjct: 462 RQDHIILKNFNLDIPAGKTVAIVGSSGNGKSTIAALLERFYDVNNGSITIDGKDLRSLNA 521

Query: 66  TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPS---- 121
           ++LRGNV+G INQEP+LFATS+ ENIRYG    +DE + E AK ANAH FI  FPS    
Sbjct: 522 SYLRGNVLGYINQEPILFATSIMENIRYGKPDATDEDVIEVAKEANAHEFIMNFPSKYDT 581

Query: 122 ------------------------------------GALDNESEKLVQAALESACKGRTV 145
                                                ALD ESE++VQ AL++  +GRTV
Sbjct: 582 QVGERGAQLSGGQKQRIAIARALLKRPSILILDEATSALDYESERIVQKALDNVTQGRTV 641

Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVEMLGQH 176
           ++IAHRLST++NAD+IVVLQ G I EM G H
Sbjct: 642 VVIAHRLSTIKNADIIVVLQRGVITEM-GTH 671

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190517|gb|EFN74514.1| ATP-binding cassette sub-family B member 8, mitochondrial [Camponotus floridanus]

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 115/227 (50%), Positives = 145/227 (63%), Gaps = 52/227 (22%)

Query: 1   MAGNL-----------RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS 49
           MAGN+           R    ILK+FNL IPAG+ VAIVG+SGNGKST+ ALLERFYDV 
Sbjct: 530 MAGNIVFENVKFSYPTRPDHIILKNFNLHIPAGKTVAIVGTSGNGKSTVAALLERFYDVD 589

Query: 50  SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKL 109
            G+ITI G D++ L+ ++LRGNV G INQEP LFATS+ ENIR+G  + +D+++ EAAK 
Sbjct: 590 EGSITIDGRDIRSLNSSYLRGNVFGYINQEPTLFATSIMENIRFGKQNATDDEVIEAAKE 649

Query: 110 ANAHGFISEFPSG----------------------------------------ALDNESE 129
           ANAH FI++FP+G                                        ALD ESE
Sbjct: 650 ANAHEFITKFPNGYETEVGERGTQLSGGQKQRVAIARALLKQPSVLILDEATSALDYESE 709

Query: 130 KLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH 176
           ++VQ A+E+A +GRTVL+IAHRLST++ AD+IVVLQ G IVEM G H
Sbjct: 710 RIVQKAIENATRGRTVLVIAHRLSTIKGADVIVVLQRGVIVEM-GTH 755

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350427088|ref|XP_003494648.1| PREDICTED: ATP-binding cassette sub-family B member 8, mitochondrial-like [Bombus impatiens]

 Score =  208 bits (530), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 111/211 (52%), Positives = 138/211 (65%), Gaps = 41/211 (19%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
           R+   ILK+FNL IPAG+ VAIVGSSGNGKSTI ALLERFYDV++G+ITI G DL+ L+ 
Sbjct: 464 RQDHVILKNFNLDIPAGKTVAIVGSSGNGKSTIAALLERFYDVNNGSITIDGKDLRSLNA 523

Query: 66  TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFP----- 120
           ++LRGN++G INQEP+LFA S+ ENIRYG    +DE + EAAK ANAH FI  FP     
Sbjct: 524 SYLRGNILGYINQEPILFAISIMENIRYGKPDATDEDVIEAAKEANAHEFIMNFPNKYDT 583

Query: 121 -----------------------------------SGALDNESEKLVQAALESACKGRTV 145
                                              + ALD ESE++VQ AL++  +GRTV
Sbjct: 584 QVGERGAQLSGGQKQRIAIARALLKRPSILILDEATSALDYESERIVQKALDNVTQGRTV 643

Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVEMLGQH 176
           ++IAHRLST++NAD+IVVLQ G I EM G H
Sbjct: 644 VVIAHRLSTIKNADIIVVLQRGVITEM-GTH 673

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781281|ref|XP_624810.3| PREDICTED: ATP-binding cassette sub-family B member 8, mitochondrial-like [Apis mellifera]

 Score =  208 bits (529), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 112/206 (54%), Positives = 136/206 (66%), Gaps = 41/206 (19%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           ILK+FNL IPAG+ VAIVGSSGNGKSTI ALLERFYDV+ G+I I G DLK L+ ++LRG
Sbjct: 456 ILKNFNLHIPAGKTVAIVGSSGNGKSTIAALLERFYDVNDGSIIIDGKDLKSLNASYLRG 515

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFP---------- 120
           NV+G I+QEP+LFATS+ ENIRYG    ++E I EAAK ANAH FI +FP          
Sbjct: 516 NVLGYIDQEPILFATSIMENIRYGKPDATNEDIIEAAKEANAHEFIMKFPNKYNTQVGEK 575

Query: 121 ------------------------------SGALDNESEKLVQAALESACKGRTVLMIAH 150
                                         + ALD ESE++VQ AL++  +GRTVL+IAH
Sbjct: 576 GAQLSGGQKQRIAIARALLKRPSILILDEATSALDYESERIVQKALDNVSQGRTVLIIAH 635

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQH 176
           RLST++NAD+IVVLQ G I EM G H
Sbjct: 636 RLSTIKNADIIVVLQRGIIAEM-GTH 660

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858748|ref|XP_003704861.1| PREDICTED: ATP-binding cassette sub-family B member 8, mitochondrial-like [Megachile rotundata]

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 112/211 (53%), Positives = 137/211 (64%), Gaps = 41/211 (19%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           IL DFNL IPAG+ VAIVGSSGNGKSTI ALLERFYDV+ G+ITI G DL+ L+  +LRG
Sbjct: 468 ILSDFNLNIPAGKTVAIVGSSGNGKSTIAALLERFYDVNDGSITIDGKDLRSLNAGYLRG 527

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFP---------- 120
           NV+G I+QEP+LFATS+ ENIRYG+   +++ I +AAK ANAH FI +FP          
Sbjct: 528 NVLGYIDQEPILFATSIMENIRYGNPDATNDDIVQAAKEANAHEFIMKFPNKYETQVGER 587

Query: 121 ------------------------------SGALDNESEKLVQAALESACKGRTVLMIAH 150
                                         + ALD ESE++VQ ALE+   GRTVL+IAH
Sbjct: 588 GTQLSGGQKQRIAIARALLKRPSILILDEATSALDYESERIVQKALENVVHGRTVLVIAH 647

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHENTRK 181
           RLST++NAD+IVVLQ G I EM G H +  K
Sbjct: 648 RLSTIKNADMIVVLQRGAIAEM-GTHADLIK 677

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020849|gb|EGI61247.1| ATP-binding cassette sub-family B member 8, mitochondrial [Acromyrmex echinatior]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 108/206 (52%), Positives = 137/206 (66%), Gaps = 41/206 (19%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           ILK+FNL IPAG+ VAIVG+SGNGKST+  LLERFYDV  G+ITI G D++ L+ ++LRG
Sbjct: 469 ILKNFNLHIPAGKTVAIVGTSGNGKSTVAVLLERFYDVDEGSITIDGRDIRSLNSSYLRG 528

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFP---------- 120
           NV+G INQEP+LFATS+ ENIRYG    +D+++ EAAK ANAH FI +FP          
Sbjct: 529 NVLGYINQEPILFATSIMENIRYGRQDATDKEVIEAAKEANAHEFIMKFPDSYATEVGER 588

Query: 121 ------------------------------SGALDNESEKLVQAALESACKGRTVLMIAH 150
                                         + ALD ESE++VQ A+E+  KG+TVL+IAH
Sbjct: 589 GTQLSGGQKQRVAIARALLKQPSVLILDEATSALDYESERIVQKAIENVTKGKTVLVIAH 648

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQH 176
           RLST++ AD+IVVLQ G IVEM G+H
Sbjct: 649 RLSTIKGADVIVVLQRGIIVEM-GKH 673

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
UNIPROTKB|E2RHJ0	713	ABCB8 "Uncharacterized protein	0.618	0.157	0.571	4.3e-45
MGI|MGI:1351667	717	Abcb8 "ATP-binding cassette, s	0.618	0.156	0.580	5.2e-45
RGD|1307655	714	Abcb8 "ATP-binding cassette, s	0.618	0.156	0.580	1.8e-44
UNIPROTKB|I3LMV8	718	ABCB8 "Uncharacterized protein	0.618	0.155	0.562	2e-44
UNIPROTKB|G3MYQ9	713	ABCB8 "Uncharacterized protein	0.618	0.157	0.553	2.3e-43
UNIPROTKB|G3XAP3	630	ABCB8 "ATP-binding cassette, s	0.618	0.177	0.553	2.8e-43
UNIPROTKB|Q9NUT2	735	ABCB8 "ATP-binding cassette su	0.618	0.152	0.553	7.2e-43
UNIPROTKB|A8J6M4	1249	CHLREDRAFT_138602 "MDR-like AB	0.696	0.100	0.523	1.2e-41
UNIPROTKB|A8J6M5	1244	CHLREDRAFT_138672 "MDR-like AB	0.696	0.101	0.523	1.6e-41
DICTYBASE|DDB_G0291714	1432	abcB3 "ABC transporter B famil	0.674	0.085	0.552	3e-41

UNIPROTKB|E2RHJ0 ABCB8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 349 (127.9 bits), Expect = 4.3e-45, Sum P(2) = 4.3e-45
 Identities = 64/112 (57%), Positives = 86/112 (76%)

Query:    11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
             +LKDF+L +P G+ VA+VG SG GK+T+ +LLERFYD ++G +T+ G DL+ LD +WLRG
Sbjct:   472 VLKDFSLTLPPGKIVALVGQSGGGKTTVASLLERFYDPTAGMVTLDGRDLRTLDPSWLRG 531

Query:    71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG 122
              VIG I+QEPVLF T++ ENIR+G    SDE++  AA+ ANAH FI+ FP G
Sbjct:   532 QVIGFISQEPVLFGTTIMENIRFGKMGASDEEVYAAAREANAHEFITSFPEG 583

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1351667 Abcb8 "ATP-binding cassette, sub-family B (MDR/TAP), member 8" [Mus musculus (taxid:10090)]

 Score = 356 (130.4 bits), Expect = 5.2e-45, Sum P(2) = 5.2e-45
 Identities = 65/112 (58%), Positives = 88/112 (78%)

Query:    11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
             +LKDF L++P+G+ VA+VG SG GK+T+ +LLERFYD  +G++T+ G DL+ L+ +WLRG
Sbjct:   471 VLKDFTLKLPSGKIVALVGQSGGGKTTVASLLERFYDPEAGSVTLDGHDLRTLNPSWLRG 530

Query:    71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG 122
              VIG I+QEPVLFAT++ ENIR+G    SDE++  AA+ ANAH FIS FP G
Sbjct:   531 QVIGFISQEPVLFATTIMENIRFGKLDASDEEVYTAAREANAHEFISSFPDG 582

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IBA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

RGD|1307655 Abcb8 "ATP-binding cassette, subfamily B (MDR/TAP), member 8" [Rattus norvegicus (taxid:10116)]

 Score = 352 (129.0 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
 Identities = 65/112 (58%), Positives = 87/112 (77%)

Query:    11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
             +LK+F L++P G+ VA+VG SG GK+T+ +LLERFYD ++G +T+ G DL+ LD +WLRG
Sbjct:   471 VLKNFTLKLPPGKIVALVGQSGGGKTTVASLLERFYDPTAGVVTLDGHDLRTLDPSWLRG 530

Query:    71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG 122
              VIG I+QEPVLFAT++ ENIR+G    SDE++  AA+ ANAH FIS FP G
Sbjct:   531 QVIGFISQEPVLFATTIMENIRFGKLDASDEEVYTAARKANAHEFISSFPDG 582

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IBA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

UNIPROTKB|I3LMV8 ABCB8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 345 (126.5 bits), Expect = 2.0e-44, Sum P(2) = 2.0e-44
 Identities = 63/112 (56%), Positives = 85/112 (75%)

Query:    11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
             +LKDF L +P G+ VA+VG SG GK+T+ +LLERFYD ++G +T+ G DL+ LD +WLRG
Sbjct:   472 VLKDFTLTLPPGKIVALVGQSGGGKTTVASLLERFYDPTAGVVTLDGRDLRTLDPSWLRG 531

Query:    71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG 122
              VIG I+QEPVLF T++ ENIR+G    SD+++  AA+ ANAH FI+ FP G
Sbjct:   532 QVIGFISQEPVLFGTTIMENIRFGKLDASDDEVYAAARAANAHEFITSFPEG 583

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G3MYQ9 ABCB8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 339 (124.4 bits), Expect = 2.3e-43, Sum P(2) = 2.3e-43
 Identities = 62/112 (55%), Positives = 85/112 (75%)

Query:    11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
             +L+DF+L +P G+ VA+VG SG GK+T+ +LLERFYD ++G +T+ G DL+ LD +WLR 
Sbjct:   472 VLRDFSLTLPPGKIVALVGQSGGGKTTVASLLERFYDPTAGVVTLDGQDLRTLDPSWLRS 531

Query:    71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG 122
              VIG I+QEPVLF T++ ENIR+G    SDE++  AA+ ANAH FI+ FP G
Sbjct:   532 QVIGFISQEPVLFGTTIMENIRFGKVDASDEEVYAAAREANAHEFITSFPEG 583

GO:0005524 "ATP binding" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|G3XAP3 ABCB8 "ATP-binding cassette, sub-family B (MDR/TAP), member 8, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 339 (124.4 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
 Identities = 62/112 (55%), Positives = 84/112 (75%)

Query:    11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
             +LKDF L +P G+ VA+VG SG GK+T+ +LLERFYD ++G + + G DL+ LD +WLRG
Sbjct:   384 VLKDFTLTLPPGKIVALVGQSGGGKTTVASLLERFYDPTAGVVMLDGRDLRTLDPSWLRG 443

Query:    71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG 122
              V+G I+QEPVLF T++ ENIR+G    SDE++  AA+ ANAH FI+ FP G
Sbjct:   444 QVVGFISQEPVLFGTTIMENIRFGKLEASDEEVYTAAREANAHEFITSFPEG 495

GO:0016021 "integral to membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q9NUT2 ABCB8 "ATP-binding cassette sub-family B member 8, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 339 (124.4 bits), Expect = 7.2e-43, Sum P(2) = 7.2e-43
 Identities = 62/112 (55%), Positives = 84/112 (75%)

Query:    11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
             +LKDF L +P G+ VA+VG SG GK+T+ +LLERFYD ++G + + G DL+ LD +WLRG
Sbjct:   489 VLKDFTLTLPPGKIVALVGQSGGGKTTVASLLERFYDPTAGVVMLDGRDLRTLDPSWLRG 548

Query:    71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG 122
              V+G I+QEPVLF T++ ENIR+G    SDE++  AA+ ANAH FI+ FP G
Sbjct:   549 QVVGFISQEPVLFGTTIMENIRFGKLEASDEEVYTAAREANAHEFITSFPEG 600

GO:0005524 "ATP binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IBA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=TAS

GO:0005215 "transporter activity" evidence=TAS

GO:0016020 "membrane" evidence=TAS

GO:0005740 "mitochondrial envelope" evidence=TAS

GO:0006810 "transport" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|A8J6M4 CHLREDRAFT_138602 "MDR-like ABC transporter" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 327 (120.2 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
 Identities = 67/128 (52%), Positives = 89/128 (69%)

Query:     7 RLKTILKD-FNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
             R   +L D FNL +PAG+ VA+VGSSG+GKST+V L+ERFYD  +G +T+ G+DL+ L  
Sbjct:   349 RPDVLLFDRFNLHVPAGKTVALVGSSGSGKSTVVQLIERFYDPLAGTVTLDGMDLRSLPL 408

Query:    66 TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALD 125
              WLR N +GL++QEP LFAT++ ENI  G  + S E++E AA+ ANAH FIS  P G   
Sbjct:   409 RWLR-NQVGLVSQEPTLFATTIYENIAIGTKNASAEEVEAAARAANAHTFISNLPQGYET 467

Query:   126 NESEKLVQ 133
                E+ VQ
Sbjct:   468 QVGERGVQ 475

GO:0005886 "plasma membrane" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

UNIPROTKB|A8J6M5 CHLREDRAFT_138672 "MDR-like ABC transporter" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 326 (119.8 bits), Expect = 1.6e-41, Sum P(2) = 1.6e-41
 Identities = 67/128 (52%), Positives = 88/128 (68%)

Query:     7 RLKTILKD-FNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
             R   +L D FNL +PAG  VA+VGSSG+GKST+V L+ERFYD  +G +T+ G+DL+ L  
Sbjct:   336 RPDVLLFDRFNLHVPAGNTVALVGSSGSGKSTVVQLIERFYDPLAGTVTLDGMDLRSLPL 395

Query:    66 TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALD 125
              WLR N +GL++QEP LFAT++ ENI  G  + S E++E AA+ ANAH FIS  P G   
Sbjct:   396 RWLR-NQVGLVSQEPTLFATTIYENIAIGTKNASAEEVEAAARAANAHTFISNLPQGYET 454

Query:   126 NESEKLVQ 133
                E+ VQ
Sbjct:   455 QVGERGVQ 462

GO:0005886 "plasma membrane" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

DICTYBASE|DDB_G0291714 abcB3 "ABC transporter B family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 327 (120.2 bits), Expect = 3.0e-41, Sum P(2) = 3.0e-41
 Identities = 68/123 (55%), Positives = 83/123 (67%)

Query:    11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
             I   FNL+I  GQ V +VG SG GKSTI++LLERFYD   G I + G D++  +   LR 
Sbjct:   531 IFNGFNLKIKPGQTVGLVGDSGGGKSTIISLLERFYDPCQGEILLDGEDIRKFNVRGLRQ 590

Query:    71 NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEK 130
               IGL+NQEPVLFAT++ ENIRYG    + ++IEEAAKLANAH FIS+ P G      EK
Sbjct:   591 K-IGLVNQEPVLFATTISENIRYGKEGATQDEIEEAAKLANAHSFISQLPQGYNTLVGEK 649

Query:   131 LVQ 133
              VQ
Sbjct:   650 GVQ 652

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0006810 "transport" evidence=IEA;ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IBA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	181
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	1e-80
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	5e-67
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	1e-65
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	8e-59
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	3e-56
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	2e-54
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	1e-53
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	4e-52
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	2e-49
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	3e-48
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	7e-48
COG5265	497	COG5265, ATM1, ABC-type transport system involved	1e-46
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	1e-46
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	6e-46
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	1e-44
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	2e-43
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	2e-43
COG4988	559	COG4988, CydD, ABC-type transport system involved	4e-41
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	5e-37
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	1e-36
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	2e-36
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	1e-35
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	3e-35
COG4987	573	COG4987, CydC, ABC-type transport system involved	5e-35
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	3e-33
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	2e-32
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	2e-30
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	1e-28
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	2e-28
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	4e-26
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	3e-25
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	3e-25
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	1e-24
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	2e-24
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	2e-24
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	2e-23
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	4e-23
cd03288	257	cd03288, ABCC_SUR2, ATP-binding cassette domain 2	4e-21
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	4e-21
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	1e-19
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	1e-18
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	1e-18
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	2e-18
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	2e-18
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	4e-18
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	1e-17
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	3e-17
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	7e-17
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	1e-16
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	3e-16
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	1e-15
COG1123	539	COG1123, COG1123, ATPase components of various ABC	1e-15
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	2e-15
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	4e-15
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	4e-15
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	9e-15
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	4e-14
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	5e-14
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	5e-14
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	1e-13
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	1e-13
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	1e-13
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	2e-13
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	2e-13
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	3e-13
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	8e-13
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	1e-12
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	1e-12
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	1e-12
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	1e-12
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	2e-12
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	3e-12
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	3e-12
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	4e-12
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	4e-12
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	9e-12
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	1e-11
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	1e-11
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	1e-11
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	2e-11
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	2e-11
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	3e-11
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	4e-11
COG1123	539	COG1123, COG1123, ATPase components of various ABC	5e-11
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	5e-11
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	5e-11
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	6e-11
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	6e-11
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	6e-11
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	8e-11
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	1e-10
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	2e-10
pfam00005	119	pfam00005, ABC_tran, ABC transporter	3e-10
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	3e-10
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	3e-10
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	3e-10
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	3e-10
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	3e-10
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	4e-10
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	4e-10
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	4e-10
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	5e-10
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	6e-10
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	7e-10
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	7e-10
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	1e-09
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	1e-09
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	2e-09
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	2e-09
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	4e-09
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	4e-09
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	5e-09
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	6e-09
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	6e-09
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	7e-09
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	7e-09
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	8e-09
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	8e-09
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	8e-09
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	9e-09
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	1e-08
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	1e-08
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	1e-08
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	1e-08
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	2e-08
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	2e-08
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-08
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	2e-08
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	3e-08
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	3e-08
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	4e-08
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	4e-08
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	4e-08
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	4e-08
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	4e-08
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	5e-08
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	6e-08
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	6e-08
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	6e-08
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	7e-08
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	7e-08
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	8e-08
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	9e-08
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	9e-08
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	1e-07
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	1e-07
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	1e-07
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	1e-07
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	1e-07
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	2e-07
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	2e-07
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	2e-07
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-07
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	2e-07
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	2e-07
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	2e-07
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	2e-07
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	2e-07
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	2e-07
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	2e-07
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	3e-07
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	3e-07
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	3e-07
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	3e-07
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	3e-07
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	3e-07
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	4e-07
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	4e-07
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	5e-07
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	5e-07
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	5e-07
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	5e-07
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	6e-07
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	6e-07
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	7e-07
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	7e-07
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	7e-07
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	7e-07
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	7e-07
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	7e-07
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	9e-07
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	9e-07
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	9e-07
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	1e-06
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	1e-06
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	1e-06
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	1e-06
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	1e-06
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	1e-06
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	1e-06
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	2e-06
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	2e-06
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	2e-06
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	2e-06
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	2e-06
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	2e-06
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-06
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	3e-06
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	3e-06
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	4e-06
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	6e-06
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	8e-06
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	8e-06
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	8e-06
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	9e-06
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	1e-05
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	1e-05
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	1e-05
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	1e-05
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	1e-05
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	1e-05
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	1e-05
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	1e-05
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	1e-05
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	2e-05
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	2e-05
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	2e-05
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	3e-05
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	3e-05
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	4e-05
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	4e-05
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	5e-05
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	6e-05
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	7e-05
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	9e-05
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	9e-05
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	9e-05
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	1e-04
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	1e-04
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	1e-04
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	1e-04
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	1e-04
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	1e-04
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	1e-04
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	1e-04
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	1e-04
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-04
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	2e-04
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	2e-04
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	2e-04
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	2e-04
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	2e-04
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	2e-04
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	2e-04
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	2e-04
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	2e-04
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	2e-04
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	2e-04
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	3e-04
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	3e-04
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	3e-04
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	3e-04
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	3e-04
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	3e-04
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	3e-04
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	3e-04
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	3e-04
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	4e-04
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	4e-04
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	4e-04
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	5e-04
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	5e-04
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	6e-04
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	6e-04
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	7e-04
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	7e-04
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	7e-04
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	8e-04
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	8e-04
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	8e-04
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	0.001
PRK00349	943	PRK00349, uvrA, excinuclease ABC subunit A; Review	0.001
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	0.001
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	0.001
smart00382	148	smart00382, AAA, ATPases associated with a variety	0.001
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	0.001
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	0.001
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	0.002
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	0.002
COG0178	935	COG0178, UvrA, Excinuclease ATPase subunit [DNA re	0.002
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	0.002
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	0.002
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	0.003
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	0.004
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	0.004
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	0.004
COG4598	256	COG4598, HisP, ABC-type histidine transport system	0.004

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score =  238 bits (610), Expect = 1e-80
 Identities = 103/207 (49%), Positives = 127/207 (61%), Gaps = 42/207 (20%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           ILK  +L IP G+ VA+VGSSG GKST+V+LLERFYD +SG I + GVD++ L+  WLR 
Sbjct: 18  ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
             IGL++QEPVLF  ++ ENIRYG    +DE++EEAAK AN H FI   P G        
Sbjct: 78  Q-IGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGER 136

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD ESEKLVQ AL+ A KGRT ++IAH
Sbjct: 137 GSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAH 196

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
           RLST++NADLI VLQ GQ+VE  G H+
Sbjct: 197 RLSTIRNADLIAVLQNGQVVEQ-GTHD 222

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score =  204 bits (520), Expect = 5e-67
 Identities = 95/207 (45%), Positives = 119/207 (57%), Gaps = 42/207 (20%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +L+D +L IPAG+ VA+VG SG+GKST+V L+ RFYDV SG I I G D++      LR 
Sbjct: 17  VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLR- 75

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
             IGL++Q+  LF  +V ENI YG    + E++EEAA+ ANAH FI E P G        
Sbjct: 76  RQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGER 135

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD ESE+LVQAALE   K RT  +IAH
Sbjct: 136 GVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAH 195

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
           RLST++NAD IVVL+ G+IVE  G HE
Sbjct: 196 RLSTIENADRIVVLEDGKIVER-GTHE 221

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score =  200 bits (512), Expect = 1e-65
 Identities = 91/209 (43%), Positives = 118/209 (56%), Gaps = 42/209 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           + +LKD +  IPAG+KVAIVG SG+GKSTI+ LL RFYDVSSG+I I G D++ +    L
Sbjct: 14  RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSL 73

Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
           R   IG++ Q+ VLF  ++  NIRYG    +DE++ EAAK A  H  I  FP G      
Sbjct: 74  R-RAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVG 132

Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
                                             ALD  +E+ +QAAL    KGRT ++I
Sbjct: 133 ERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVI 192

Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           AHRLST+ NAD I+VL+ G+IVE  G HE
Sbjct: 193 AHRLSTIVNADKIIVLKDGRIVER-GTHE 220

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score =  183 bits (466), Expect = 8e-59
 Identities = 83/209 (39%), Positives = 118/209 (56%), Gaps = 42/209 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K +LKD N  I  G+ VAIVG +G GK+T++ LL RFYD   G I I G+D++ +    L
Sbjct: 16  KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSL 75

Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
           R ++IG++ Q+  LF+ ++ ENIR G  + +DE++ EAAK A AH FI + P+G      
Sbjct: 76  R-SMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLG 134

Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
                                              +D E+EKL+Q ALE   KGRT ++I
Sbjct: 135 ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIII 194

Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           AHRLST++NAD I+VL  G+I+E  G H+
Sbjct: 195 AHRLSTIKNADKILVLDDGKIIEE-GTHD 222

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score =  185 bits (471), Expect = 3e-56
 Identities = 93/206 (45%), Positives = 113/206 (54%), Gaps = 42/206 (20%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           L   NL +  G+ VA+VG SG GKST+  LL RFYD  SG I + GVDL+ LD   LR  
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELR-A 414

Query: 72  VIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--------- 122
            + L+ Q+PVLFA SV ENIRYG    +DE++E AA+ A+AH FIS  P G         
Sbjct: 415 RMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERG 474

Query: 123 -------------------------------ALDNESEKLVQAALESACKGRTVLMIAHR 151
                                          ALD ESE+LVQ ALE+  KGRT L+IAHR
Sbjct: 475 VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHR 534

Query: 152 LSTVQNADLIVVLQAGQIVEMLGQHE 177
           L+TV  AD IVV+  G+IV   G H 
Sbjct: 535 LATVLKADRIVVMDQGRIVAQ-GTHA 559

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score =  169 bits (432), Expect = 2e-54
 Identities = 76/169 (44%), Positives = 106/169 (62%), Gaps = 17/169 (10%)

Query: 7   RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT 66
           R K +LKD +L I  G+KVAIVG SG+GKST++ LL R YD +SG I I GVDL+ LD  
Sbjct: 13  RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLE 72

Query: 67  WLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEF------- 119
            LR N I  + Q+P LF+ ++RENI      +S  Q     ++A A   + +        
Sbjct: 73  SLRKN-IAYVPQDPFLFSGTIRENI------LSGGQ---RQRIAIARALLRDPPILILDE 122

Query: 120 PSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ 168
            + ALD E+E L+  AL +  KG+TV++IAHRLST+++AD I+VL  G+
Sbjct: 123 ATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score =  178 bits (453), Expect = 1e-53
 Identities = 92/209 (44%), Positives = 122/209 (58%), Gaps = 42/209 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K +LKD +  I  G+KVAIVG SG+GKST++ LL R YD +SG I I G+D++ +    L
Sbjct: 342 KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401

Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
           R   IG+++Q+P+LF+ ++RENI  G    +DE+IEEA KLANAH FI+  P G      
Sbjct: 402 R-KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVG 460

Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
                                             ALD E+E L+Q AL+   KGRT L+I
Sbjct: 461 ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII 520

Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           AHRLST++NAD I+VL  G+IVE  G HE
Sbjct: 521 AHRLSTIKNADRIIVLDNGRIVER-GTHE 548

Length = 567

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score =  176 bits (448), Expect = 4e-52
 Identities = 84/208 (40%), Positives = 113/208 (54%), Gaps = 42/208 (20%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +L+D +L IP G+KVAIVG SG+GKST++ LL   Y    G I + GVDL  +D   LR 
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
             +G + Q+P LF+ S+RENI  G+   +DE+I EAA+LA AH FI   P G        
Sbjct: 548 Q-VGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEG 606

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD E+E ++   L    +GRTV++IAH
Sbjct: 607 GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAH 666

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHEN 178
           RLST+++AD I+VL  G+IVE  G HE 
Sbjct: 667 RLSTIRSADRIIVLDQGKIVEQ-GSHEE 693

Length = 709

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score =  159 bits (403), Expect = 2e-49
 Identities = 86/207 (41%), Positives = 113/207 (54%), Gaps = 42/207 (20%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           IL + +LRI  G+ V IVG SG+GKST+  L++RFY   +G + + G DL   D  WLR 
Sbjct: 17  ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
            V G++ QE VLF  S+R+NI   D  +S E++ EAAKLA AH FISE P G        
Sbjct: 77  QV-GVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ 135

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD ESE  +   +   C GRTV++IAH
Sbjct: 136 GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAH 195

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
           RLSTV+NAD I+V++ G+IVE  G H+
Sbjct: 196 RLSTVKNADRIIVMEKGRIVEQ-GSHD 221

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score =  164 bits (417), Expect = 3e-48
 Identities = 80/207 (38%), Positives = 104/207 (50%), Gaps = 43/207 (20%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           L   +L I  G+ VA+VG SG+GKST+V L+ RFY+  SG I + G DL       LR  
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR-R 406

Query: 72  VIGLINQEPVLFATSVRENIRYGD-SSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
            + L++Q+ VLF  ++  NI YG        +IE A   A A  F+ + P G        
Sbjct: 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALDNESE+LVQAALE   +GRT L+IAH
Sbjct: 467 GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAH 526

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
           RLST++ AD IVV+  G+IVE  G H 
Sbjct: 527 RLSTIEKADRIVVMDDGRIVER-GTHN 552

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score =  164 bits (418), Expect = 7e-48
 Identities = 82/207 (39%), Positives = 108/207 (52%), Gaps = 42/207 (20%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +L + NL I  G+ + IVG SG+GKST+  LL+R Y    G + + GVDL   D  WLR 
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRR 531

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
            + G++ QE VLF+ S+R+NI   +     E +  AAKLA AH FISE P G        
Sbjct: 532 QM-GVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEK 590

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD ESE L+   +   C+GRTV++IAH
Sbjct: 591 GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAH 650

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
           RLSTV+  D I+VL+ GQI E  G+HE
Sbjct: 651 RLSTVRACDRIIVLEKGQIAES-GRHE 676

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score =  159 bits (403), Expect = 1e-46
 Identities = 83/209 (39%), Positives = 110/209 (52%), Gaps = 42/209 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           + IL   +  IP G+ VAIVG SG GKSTI+ LL RFYDV+SG+ITI G D++ +    L
Sbjct: 276 RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSL 335

Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
           R   IG++ Q+ VLF  ++  NI+YG    + E++  AA+ A  H FI   P G      
Sbjct: 336 R-RAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG 394

Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
                                             ALD  +E+ +QAAL     GRT L+I
Sbjct: 395 ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVI 454

Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           AHRLST+ +AD I+VL  G+IVE  G HE
Sbjct: 455 AHRLSTIIDADEIIVLDNGRIVER-GTHE 482

Length = 497

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score =  161 bits (409), Expect = 1e-46
 Identities = 85/211 (40%), Positives = 111/211 (52%), Gaps = 44/211 (20%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +LK     +  G+ VA+VG SG+GKST+ ALL+  Y  + G + + GV L   D  +L  
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
            V  L+ QEPVLF+ SVRENI YG +   DE+I  AAK ANAH FI EFP+G        
Sbjct: 556 QV-ALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD E E+L+Q +       RTVL+IAH
Sbjct: 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSR--ASRTVLLIAH 672

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHENTRK 181
           RLSTV+ AD I+VL+ G +VEM G H+   +
Sbjct: 673 RLSTVERADQILVLKKGSVVEM-GTHKQLME 702

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score =  158 bits (401), Expect = 6e-46
 Identities = 82/207 (39%), Positives = 111/207 (53%), Gaps = 43/207 (20%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           L++ N +IPAG+ VA+VG SG+GKSTI  LL RFYD+  G I + G DL+      LR N
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLR-N 417

Query: 72  VIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
            + L++Q   LF  ++  NI Y      S EQIEEAA++A A  FI++  +G        
Sbjct: 418 QVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGEN 477

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD ESE+ +QAAL+   K RT L+IAH
Sbjct: 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH 537

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
           RLST++ AD I+V++ G+IVE  G H 
Sbjct: 538 RLSTIEKADEILVVEDGEIVER-GTHA 563

Length = 582

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score =  146 bits (371), Expect = 1e-44
 Identities = 79/199 (39%), Positives = 108/199 (54%), Gaps = 41/199 (20%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +L+D +  +  G+  A+VG SG+GKST+VALLE FY    G + + G  +   +  +L  
Sbjct: 29  VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH- 87

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
           + + L+ QEPVLFA S+++NI YG  S S E ++EAA+ A+AH FISE  SG        
Sbjct: 88  SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK 147

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD ESE+ VQ AL    + RTVL+IAH
Sbjct: 148 GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAH 207

Query: 151 RLSTVQNADLIVVLQAGQI 169
           RLSTV+ AD I+VL  G+I
Sbjct: 208 RLSTVERADQILVLDGGRI 226

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score =  143 bits (364), Expect = 2e-43
 Identities = 65/206 (31%), Positives = 102/206 (49%), Gaps = 46/206 (22%)

Query: 8   LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
           L  +LK+ +  I  G+KV IVG +G+GKS+++  L R  ++SSG+I I GVD+  +    
Sbjct: 16  LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHD 75

Query: 68  LRGNVIGLINQEPVLFATSVRENIRYGD--SSVSDEQIEEAAKLANAHGFISEFPSG--- 122
           LR   I +I Q+PVLF+ ++R N+   D     SDE++ +A +      F+   P G   
Sbjct: 76  LRSR-ISIIPQDPVLFSGTIRSNL---DPFGEYSDEELWQALERVGLKEFVESLPGGLDT 131

Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
                                                ++D E++ L+Q  +  A K  TV
Sbjct: 132 VVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTV 191

Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVE 171
           L IAHRL T+ ++D I+VL  G++VE
Sbjct: 192 LTIAHRLDTIIDSDRILVLDKGRVVE 217

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score =  151 bits (384), Expect = 2e-43
 Identities = 75/201 (37%), Positives = 103/201 (51%), Gaps = 41/201 (20%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           ++D +     GQ VAIVG +G GKST++ LL+R +D  SG I I G D++ +    LR N
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410

Query: 72  VIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--------- 122
            I ++ Q+  LF  S+ +NIR G    +DE++  AA+ A AH FI   P G         
Sbjct: 411 -IAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG 469

Query: 123 -------------------------------ALDNESEKLVQAALESACKGRTVLMIAHR 151
                                          ALD E+E  V+AAL+   KGRT  +IAHR
Sbjct: 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHR 529

Query: 152 LSTVQNADLIVVLQAGQIVEM 172
           LSTV+NAD I+V   G++VE 
Sbjct: 530 LSTVRNADRILVFDNGRVVES 550

Length = 588

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  145 bits (367), Expect = 4e-41
 Identities = 72/208 (34%), Positives = 99/208 (47%), Gaps = 41/208 (19%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K  L D NL I AGQ  A+VG+SG GKST++ LL  F   + G I ++G+DL+ L     
Sbjct: 334 KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAW 393

Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEF--------- 119
           R   I  ++Q P LFA ++RENI       SDE+I  A   A    F+ +          
Sbjct: 394 RKQ-ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGE 452

Query: 120 ------------------------------PSGALDNESEKLVQAALESACKGRTVLMIA 149
                                         P+  LD E+E+++  AL+   K +TVL+I 
Sbjct: 453 GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVIT 512

Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           HRL    +AD IVVL  G++VE  G HE
Sbjct: 513 HRLEDAADADRIVVLDNGRLVE-QGTHE 539

Length = 559

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score =  134 bits (340), Expect = 5e-37
 Identities = 62/199 (31%), Positives = 97/199 (48%), Gaps = 41/199 (20%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           L + +L I  G+KVAI+G  G+GKST++ LL   Y  + G++ + GVD++ +D   LR N
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540

Query: 72  VIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--------- 122
            IG + Q+P LF  ++R+NI  G     DE+I  AA+LA    F+   P G         
Sbjct: 541 -IGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERG 599

Query: 123 -------------------------------ALDNESEKLVQAALESACKGRTVLMIAHR 151
                                          A+DN SE+  +  L+    G+T++++ HR
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHR 659

Query: 152 LSTVQNADLIVVLQAGQIV 170
            S +   D I+V+  G+IV
Sbjct: 660 TSLLDLVDRIIVMDNGRIV 678

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score =  132 bits (334), Expect = 1e-36
 Identities = 64/194 (32%), Positives = 90/194 (46%), Gaps = 43/194 (22%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD-GTWLRG 70
           L+  +  +P G++VA+VG SG GKST++ LL  F D + G+I ++GV L   D  +W   
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
             I  + Q P LFA ++ ENIR      SD +I EA + A    F++  P G        
Sbjct: 398 --IAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEG 455

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                            LD E+E  V  AL +  +GRTVL++ H
Sbjct: 456 GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTH 515

Query: 151 RLSTVQNADLIVVL 164
           RL+    AD IVVL
Sbjct: 516 RLALAALADRIVVL 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score =  125 bits (317), Expect = 2e-36
 Identities = 62/199 (31%), Positives = 99/199 (49%), Gaps = 41/199 (20%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           L + +L I AG+KVAI+G  G+GKST++ LL   Y  +SG++ + G D++ LD   LR N
Sbjct: 20  LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79

Query: 72  VIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--------- 122
            IG + Q+  LF  ++R+NI  G     DE+I  AA+LA    F+++ P+G         
Sbjct: 80  -IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERG 138

Query: 123 -------------------------------ALDNESEKLVQAALESACKGRTVLMIAHR 151
                                          A+D  SE+ ++  L      +T+++I HR
Sbjct: 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHR 198

Query: 152 LSTVQNADLIVVLQAGQIV 170
            S +   D I+V+ +G+IV
Sbjct: 199 PSLLDLVDRIIVMDSGRIV 217

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score =  130 bits (329), Expect = 1e-35
 Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 48/206 (23%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--YDVSSGNITISGVDLKHLD-G 65
           KT+    N  +PAGQ++A+VG SG GK++++  L  F  Y    G++ I+G++L+ LD  
Sbjct: 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY---QGSLKINGIELRELDPE 419

Query: 66  TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--- 122
           +W +   +  + Q P L   ++R+N+  G+   SDEQ+++A + A    F+   P G   
Sbjct: 420 SWRKH--LSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDT 477

Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
                                                +LD  SE+LV  AL +A + +T 
Sbjct: 478 PIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTT 537

Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVE 171
           LM+ H+L  +   D I V+Q GQIV+
Sbjct: 538 LMVTHQLEDLAQWDQIWVMQDGQIVQ 563

Length = 588

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score =  129 bits (327), Expect = 3e-35
 Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 44/207 (21%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           ++++F+L +  GQ+VA+VG SG+GKSTI  L+   Y   SG I   G+  + +    L  
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLA- 552

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
           N + +++Q+  LF  +VR+N+   D ++ D  +  A K A  H  I+  P G        
Sbjct: 553 NSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEG 612

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD E+EK++   L    +G T +++AH
Sbjct: 613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAH 670

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
           RLST+++ D I+VL+ G++V+  G HE
Sbjct: 671 RLSTIRDCDEIIVLERGKVVQR-GTHE 696

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  128 bits (323), Expect = 5e-35
 Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 42/208 (20%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
             LK+FNL +  G+KVAI+G SG+GKST++ LL   +D   G+IT++GV++  LD   LR
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALR 411

Query: 70  GNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
              I ++ Q   LF+ ++R+N+R  +   SDE++  A +       +   P G       
Sbjct: 412 -ETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGE 470

Query: 123 ---------------------------------ALDNESEKLVQAALESACKGRTVLMIA 149
                                             LD  +E+ V A L    +G+T+LM+ 
Sbjct: 471 GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVT 530

Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           HRL  ++  D I+VL  G+I+E  G H 
Sbjct: 531 HRLRGLERMDRIIVLDNGKIIEE-GTHA 557

Length = 573

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score =  123 bits (310), Expect = 3e-33
 Identities = 75/210 (35%), Positives = 107/210 (50%), Gaps = 41/210 (19%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           + D +    AGQ VAIVG +G GK+T++ LL+R YD + G I I G+D+  +    LR  
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLR-K 409

Query: 72  VIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--------- 122
            I  + Q+  LF  S+RENIR G    +DE++ EAAK A AH FI +  +G         
Sbjct: 410 SIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERG 469

Query: 123 -------------------------------ALDNESEKLVQAALESACKGRTVLMIAHR 151
                                          ALD E+E  V+ A+++  K RT  +IAHR
Sbjct: 470 NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHR 529

Query: 152 LSTVQNADLIVVLQAGQIVEMLGQHENTRK 181
           LSTV+NADL++ L  G+++E     E  +K
Sbjct: 530 LSTVRNADLVLFLDQGRLIEKGSFQELIQK 559

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score =  121 bits (306), Expect = 2e-32
 Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 41/206 (19%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +LK  +L+I AG+KVA++G +G GKST++ LL R +D   G I ++G  +       LR 
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALR- 413

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEA------------------------ 106
             I +++Q   LF+ ++R+N+     + SDE + E                         
Sbjct: 414 QAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGG 473

Query: 107 ---------------AKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHR 151
                          A L +A   + + P+  LD E+E+ +   L    + +TVLMI HR
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHR 533

Query: 152 LSTVQNADLIVVLQAGQIVEMLGQHE 177
           L+ ++  D I V+  GQI+E  G H+
Sbjct: 534 LTGLEQFDRICVMDNGQIIE-QGTHQ 558

Length = 574

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score =  108 bits (273), Expect = 2e-30
 Identities = 48/164 (29%), Positives = 93/164 (56%), Gaps = 3/164 (1%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           + +LK+ +L +  G+K+A++G SG+GKST++ LL        G IT+ GV +  L+    
Sbjct: 15  QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKA-- 72

Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEA-AKLANAHGFISEFPSGALDNE 127
             ++I ++NQ P LF T++R N+    S    +++  A   L +A   + + P+  LD  
Sbjct: 73  LSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPI 132

Query: 128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVE 171
           +E+ + + +    K +T++ I H L+ +++ D I+ L+ G+I+ 
Sbjct: 133 TERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score =  105 bits (263), Expect = 1e-28
 Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 26/187 (13%)

Query: 8   LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
           L  +LK+ + ++ AG+K+ IVG +G GKST++  L RF +   G I I G+D+  +    
Sbjct: 20  LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLED 79

Query: 68  LRGNVIGLINQEPVLFATSVRENI-RYGDSSVSDEQIEEA-------------------- 106
           LR + + +I Q+P LF+ ++R N+  + +   SDE+I  A                    
Sbjct: 80  LR-SSLTIIPQDPTLFSGTIRSNLDPFDE--YSDEEIYGALRVSEGGLNLSQGQRQLLCL 136

Query: 107 --AKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL 164
             A L      + +  + ++D  ++ L+Q  +       T+L IAHRL T+ + D I+V+
Sbjct: 137 ARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVM 196

Query: 165 QAGQIVE 171
            AG++ E
Sbjct: 197 DAGEVKE 203

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score =  109 bits (275), Expect = 2e-28
 Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 42/209 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
              L++ N  +  GQ + I G +G+GKST+++L++R +DVS G+I    + L  L     
Sbjct: 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSW 387

Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
           R   + +++Q P LF+ +V  NI  G    + ++IE  A+LA+ H  I   P G      
Sbjct: 388 RSR-LAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVG 446

Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
                                             A+D  +E  +   L    +GRTV++ 
Sbjct: 447 ERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIIS 506

Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           AHRLS +  A  I+V+Q G I +  G H+
Sbjct: 507 AHRLSALTEASEILVMQHGHIAQR-GNHD 534

Length = 569

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score =  103 bits (259), Expect = 4e-26
 Identities = 68/202 (33%), Positives = 98/202 (48%), Gaps = 44/202 (21%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           IL D +L+I  G+ VAIVG SG+GKST++ LL  F    SG++   G DL  LD   +R 
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRR 527

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
             +G++ Q   L + S+ ENI  G + ++ ++  EAA++A     I   P G        
Sbjct: 528 Q-LGVVLQNGRLMSGSIFENI-AGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585

Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALDN ++ +V  +LE     R V  IAH
Sbjct: 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIV--IAH 643

Query: 151 RLSTVQNADLIVVLQAGQIVEM 172
           RLST++NAD I VL AG++V+ 
Sbjct: 644 RLSTIRNADRIYVLDAGRVVQQ 665

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score =  100 bits (252), Expect = 3e-25
 Identities = 65/203 (32%), Positives = 93/203 (45%), Gaps = 44/203 (21%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K  L+  +  + AG+ +AI+G SG+GKST+  L+   +  +SG++ + G DLK  D    
Sbjct: 331 KPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390

Query: 69  RGNVIGLINQEPVLFATSVRENI-RYGDSSVSDEQIEEAAKLANAHGFISEFPSG----- 122
            G  IG + Q+  LF  +V ENI R+G+ +   E+I EAAKLA  H  I   P G     
Sbjct: 391 -GKHIGYLPQDVELFPGTVAENIARFGE-NADPEKIIEAAKLAGVHELILRLPDGYDTVI 448

Query: 123 -----------------------------------ALDNESEK-LVQAALESACKGRTVL 146
                                               LD E E+ L  A      +G TV+
Sbjct: 449 GPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVV 508

Query: 147 MIAHRLSTVQNADLIVVLQAGQI 169
           +I HR S +   D I+VLQ G+I
Sbjct: 509 VITHRPSLLGCVDKILVLQDGRI 531

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 95.4 bits (238), Expect = 3e-25
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 36/176 (20%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +L++ +  I  G+ +AI+G SG+GKST+  L+      +SG + + G D+   D   L  
Sbjct: 17  VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD 76

Query: 71  NVIGLINQEPVLFATSVRENI-------R-------YGDSS--VSDEQIEEAAKLANAHG 114
           + +G + Q+  LF+ S+ ENI       R       YG+    V DE         N+H 
Sbjct: 77  H-VGYLPQDDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDE--------PNSH- 126

Query: 115 FISEFPSGALDNESEKLVQAALESA-CKGRTVLMIAHRLSTVQNADLIVVLQAGQI 169
                    LD E E+ +  A+ +    G T ++IAHR  T+ +AD I+VL+ G++
Sbjct: 127 ---------LDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 99.0 bits (247), Expect = 1e-24
 Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 41/182 (22%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +L   +L +P G++VAI+G SG+GKST++A L    D   G +T+ GV +  LD   +R 
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVR- 408

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGA------- 123
             + +  Q+  LF T+VREN+R      +DE++  A +      ++   P G        
Sbjct: 409 RRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEG 468

Query: 124 ---------------------------------LDNESEKLVQAALESACKGRTVLMIAH 150
                                            LD E+   +   L +A  GRTV++I H
Sbjct: 469 GARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITH 528

Query: 151 RL 152
            L
Sbjct: 529 HL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 98.9 bits (247), Expect = 2e-24
 Identities = 64/202 (31%), Positives = 95/202 (47%), Gaps = 42/202 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K ILK  +  + AG+ + I+G SG+GKST+  LL   +  +SG++ + G DL+  D   L
Sbjct: 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQL 408

Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
            G  IG + Q+  LF  ++ ENI         E++ EAA+LA  H  I   P G      
Sbjct: 409 -GRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIG 467

Query: 123 ----------------------------------ALDNESEKLVQAALESA-CKGRTVLM 147
                                              LD+E E  + AA+ +A  +G TV++
Sbjct: 468 EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVV 527

Query: 148 IAHRLSTVQNADLIVVLQAGQI 169
           IAHR S + + D I+VLQ G+I
Sbjct: 528 IAHRPSALASVDKILVLQDGRI 549

Length = 580

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 99.0 bits (247), Expect = 2e-24
 Identities = 65/206 (31%), Positives = 95/206 (46%), Gaps = 42/206 (20%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           IL D +L I    K  IVG SG+GKST+  LL  F+   SG I ++G  LK +D   LR 
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548

Query: 71  NVIGLINQEPVLFATSVRENIRYGDS-SVSDEQIEEAAKLANAHGFISEFPSGALDNESE 129
             I  + QEP +F+ S+ EN+  G   +VS ++I  A ++A     I   P G     SE
Sbjct: 549 -FINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSE 607

Query: 130 K-------------LVQAAL-ESAC-------------------------KGRTVLMIAH 150
           +             L +A L +S                           + +T++ +AH
Sbjct: 608 EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAH 667

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQH 176
           RLS  + +D I+VL  G+I+E  G H
Sbjct: 668 RLSVAKQSDKIIVLDHGKIIEQ-GSH 692

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 95.9 bits (239), Expect = 2e-23
 Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 43/212 (20%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
           R    +L++ NL +P+   VA+VG +G+GKST+ +LL  +Y ++ G I + G  L  L  
Sbjct: 351 RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSH 410

Query: 66  TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--- 122
           + LR  V  ++ Q+PV+ A +   N+  G   +S+EQ+ +A +           P G   
Sbjct: 411 SVLRQGV-AMVQQDPVVLADTFLANVTLG-RDISEEQVWQALETVQLAELARSLPDGLYT 468

Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
                                                 +D+ +E+ +Q AL +  +  T+
Sbjct: 469 PLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTL 528

Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           ++IAHRLST+  AD I+VL  GQ VE  G H+
Sbjct: 529 VVIAHRLSTIVEADTILVLHRGQAVEQ-GTHQ 559

Length = 592

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 95.0 bits (236), Expect = 4e-23
 Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 46/206 (22%)

Query: 8    LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
            L  +L+  N+ I  G+KV IVG +G GKS++   L R  + + G I I G+++  +    
Sbjct: 1298 LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHD 1357

Query: 68   LRGNVIGLINQEPVLFATSVRENIRYGD--SSVSDEQIEEAAKLANAHGFISEFPSG--- 122
            LR   I +I Q+PVLF+ S+R N+   D  S  SDE++  A +LA+   F+S  P     
Sbjct: 1358 LRFK-ITIIPQDPVLFSGSLRMNL---DPFSQYSDEEVWWALELAHLKTFVSALPDKLDH 1413

Query: 123  -------------------------------------ALDNESEKLVQAALESACKGRTV 145
                                                 A+D E++ L+Q+ + +  +  TV
Sbjct: 1414 ECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTV 1473

Query: 146  LMIAHRLSTVQNADLIVVLQAGQIVE 171
            L IAHRL+T+ +   ++VL  G++ E
Sbjct: 1474 LTIAHRLNTIMDYTRVIVLDKGEVAE 1499

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR

 Score = 86.9 bits (215), Expect = 4e-21
 Identities = 60/204 (29%), Positives = 97/204 (47%), Gaps = 42/204 (20%)

Query: 8   LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
           LK +LK     I  GQKV I G +G+GKS++     R  D+  G I I G+D+  L    
Sbjct: 33  LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHT 92

Query: 68  LRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG----- 122
           LR   + +I Q+P+LF+ S+R N+   +   +D+++ EA ++A     +   P G     
Sbjct: 93  LRSR-LSIILQDPILFSGSIRFNLD-PECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVV 150

Query: 123 -----------------------------------ALDNESEKLVQAALESACKGRTVLM 147
                                              ++D  +E ++Q  + +A   RTV+ 
Sbjct: 151 TEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVT 210

Query: 148 IAHRLSTVQNADLIVVLQAGQIVE 171
           IAHR+ST+ +ADL++VL  G +VE
Sbjct: 211 IAHRVSTILDADLVLVLSRGILVE 234

The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 86.1 bits (214), Expect = 4e-21
 Identities = 58/210 (27%), Positives = 89/210 (42%), Gaps = 49/210 (23%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHL 63
           K  LKD +L IP G+  A++G SG GKST++ LL R  D+       G + + G D+  L
Sbjct: 13  KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDL 72

Query: 64  DGT--WLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA---- 110
           D     LR  V G++ Q+P  F  S+ +N+ YG            DE++EEA + A    
Sbjct: 73  DVDVLELRRRV-GMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD 131

Query: 111 ----NAHGF------------------------ISEFPSGALDNESEKLVQAALESACKG 142
                 H                          + E P+ ALD  S   ++  +    K 
Sbjct: 132 EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDE-PTSALDPISTAKIEELIAELKKE 190

Query: 143 RTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
            T++++ H +      AD    L  G++VE
Sbjct: 191 YTIVIVTHNMQQAARVADRTAFLLNGRLVE 220

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 81.1 bits (201), Expect = 1e-19
 Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 14/170 (8%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           KT+L D +L I AG+ VA++G SG+GKST++  +    +  SG+I I G DL  L+    
Sbjct: 13  KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELP 72

Query: 69  -RGNVIGLINQEPVLFAT-SVRENIRYGDSSVSDEQIEEAAKLANA-----HGFISEFPS 121
                IG++ Q+  LF   +V ENI  G   +S  Q +  A LA A        + + P+
Sbjct: 73  PLRRRIGMVFQDFALFPHLTVLENIALG---LSGGQQQRVA-LARALAMDPDVLLLDEPT 128

Query: 122 GALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQ 168
            ALD  + + V+A L+S     G TV+++ H L      AD +VVL+ G+
Sbjct: 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 79.0 bits (196), Expect = 1e-18
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 40/202 (19%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
              +  L D +L I  G+ V IVG +G+GKST++ LL      +SG + + G DL  L  
Sbjct: 11  DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSL 70

Query: 66  TWLRGNVIGLINQEP--VLFATSVRENIRYG--DSSVSDEQIEEAAKLANAHGFISEF-- 119
             LR  V GL+ Q P    F  +V E + +G  +  + +E+IEE  + A     +     
Sbjct: 71  KELRRKV-GLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD 129

Query: 120 -------------------------------PSGALDNESEKLVQAAL-ESACKGRTVLM 147
                                          P+  LD    + +   L +   +G+T+++
Sbjct: 130 RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIII 189

Query: 148 IAHRLSTVQN-ADLIVVLQAGQ 168
           + H L  +   AD ++VL+ G+
Sbjct: 190 VTHDLDLLLELADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 79.1 bits (196), Expect = 1e-18
 Identities = 61/208 (29%), Positives = 90/208 (43%), Gaps = 48/208 (23%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDG 65
              LKD NL I AG+ VAIVG SG+GKST   ++  L++    +SG + I+G DL  L  
Sbjct: 18  VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSE 74

Query: 66  ---TWLRGNVIGLINQEPVLFAT-SVRENIRYGD--SSVSDEQIEEAAK-LANAHG---- 114
                LR   IG + Q   L    +V EN+      +  S  + + AA+ L    G    
Sbjct: 75  KELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDR 134

Query: 115 ----FISEF-------------------------PSGALDNESEKLVQAALESACK--GR 143
                 SE                          P+G LD+++ K V   L    K  G+
Sbjct: 135 LLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGK 194

Query: 144 TVLMIAHRLSTVQNADLIVVLQAGQIVE 171
           T++M+ H     + AD ++ L+ G+I E
Sbjct: 195 TIIMVTHDPELAKYADRVIELKDGKIEE 222

Length = 226

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 79.1 bits (196), Expect = 2e-18
 Identities = 51/208 (24%), Positives = 78/208 (37%), Gaps = 46/208 (22%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL- 68
             L D +  I  G+ + +VG SG+GKST+   +      +SG+I   G DL  L      
Sbjct: 19  KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRK 78

Query: 69  -RGNVIGLINQEPVL-------FATSVRENIRYGDSSVSDEQIEEAAKLA-----NAHGF 115
            R   I ++ Q+P+            + E +R        E  +EA  L           
Sbjct: 79  IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEV 138

Query: 116 ISEFP---SG--------------------------ALDNESEKLVQAALESACK--GRT 144
           ++ +P   SG                          ALD   +  +   L+   +  G T
Sbjct: 139 LNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLT 198

Query: 145 VLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
           +L I H L  V   AD + V+ AG+IVE
Sbjct: 199 LLFITHDLGVVAKIADRVAVMYAGKIVE 226

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 81.3 bits (201), Expect = 2e-18
 Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 40/204 (19%)

Query: 8    LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
            L  +L   +  I   +KV IVG +G GKS+++  L R  ++  G I I G D+       
Sbjct: 1251 LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMD 1310

Query: 68   LRGNVIGLINQEPVLFATSVRENIR-YGDSSVSD--EQIEEA----AKLANAHGFISEFP 120
            LR  V+G+I Q PVLF+ +VR N+  + + + +D  E +E A        N+ G  +E  
Sbjct: 1311 LR-KVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVS 1369

Query: 121  SG--------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
                                              A+D  ++ L+Q  +    K  T+L+I
Sbjct: 1370 EAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 1429

Query: 149  AHRLSTVQNADLIVVLQAGQIVEM 172
            AHRL+T+ + D I+VL AG++VE 
Sbjct: 1430 AHRLNTIIDCDRILVLDAGRVVEF 1453

Length = 1622

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 76.5 bits (189), Expect = 4e-18
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 28/167 (16%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           +T L + +L + AG+ VA+VG +G+GKST++  +      +SG I I G D+  L    L
Sbjct: 12  RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL 71

Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQ---IEEAAKLANAHGFIS--EFPSGA 123
           R   IG + Q                   +S  Q   +  A  L      +   E P+  
Sbjct: 72  R-RRIGYVPQ-------------------LSGGQRQRVALARALLLNPDLLLLDE-PTSG 110

Query: 124 LDNESEKLVQAAL-ESACKGRTVLMIAHRLSTVQNA-DLIVVLQAGQ 168
           LD  S + +   L E A +GRTV+++ H     + A D ++VL+ G+
Sbjct: 111 LDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 77.2 bits (190), Expect = 1e-17
 Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K ILKD +++   G    IVG SG GKST++ L+ R  D + G+I I GVD+K +D   L
Sbjct: 16  KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDL 75

Query: 69  RGNVIGLINQEPVLFATSVRENIRYG 94
           R   IG++ Q+P LF  +V++NI YG
Sbjct: 76  RRK-IGMVFQQPHLFEGTVKDNIEYG 100

Length = 241

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 75.6 bits (187), Expect = 3e-17
 Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 42/203 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
              L D +L +  G+ +A++G SG GK+T++ L+       SG I I G D+  +     
Sbjct: 13  VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP-PER 71

Query: 69  RGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFP- 120
           R   IG++ Q+  LF   +V ENI +G        +    ++ E  +L    G ++ +P 
Sbjct: 72  RN--IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPH 129

Query: 121 --SG--------------------------ALDNESEKLVQAALESACK--GRTVLMIAH 150
             SG                          ALD +  + ++  L+   +  G T + + H
Sbjct: 130 ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTH 189

Query: 151 RLS-TVQNADLIVVLQAGQIVEM 172
                +  AD I V+  G+IV++
Sbjct: 190 DQEEALALADRIAVMNEGRIVQV 212

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 77.0 bits (189), Expect = 7e-17
 Identities = 44/114 (38%), Positives = 68/114 (59%), Gaps = 4/114 (3%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGV-DLKHLD 64
           R+   I KD N  +  G+  A VG SG GKSTI+ L+ER YD + G+I I+   +LK ++
Sbjct: 395 RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDIN 454

Query: 65  GTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISE 118
             W R   IG+++Q+P+LF+ S++ NI+Y   S+ D  +E  +   N  G  S+
Sbjct: 455 LKWWRSK-IGVVSQDPLLFSNSIKNNIKYSLYSLKD--LEALSNYYNEDGNDSQ 505

Length = 1466

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 41/205 (20%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
              KT L   +  +  G+   ++G +G GK+T++ +L      +SG I + G D+     
Sbjct: 15  GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPA 74

Query: 66  TWLRGNVIGLINQEPVLFAT-SVRENIRY------GDSSVSDEQIEEAAKLAN----AHG 114
              R   IG + QEP L+   +VREN+ +           ++E+IEE  +L      A+ 
Sbjct: 75  KVRRR--IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANK 132

Query: 115 FISEFPSG-------------------------ALDNESEKLVQAALESACK--GRTVLM 147
            +     G                          LD ES + +   L    K  G T+L+
Sbjct: 133 KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILL 192

Query: 148 IAHRLSTV-QNADLIVVLQAGQIVE 171
             H L    +  D +++L  G+I+ 
Sbjct: 193 STHILEEAEELCDRVIILNDGKIIA 217

Length = 293

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 75.4 bits (185), Expect = 3e-16
 Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 46/206 (22%)

Query: 8    LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
            L  +L   +  +   +KV +VG +G GKS+++  L R  ++  G I I   D+     T 
Sbjct: 1248 LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTD 1307

Query: 68   LRGNVIGLINQEPVLFATSVRENIRYGD--SSVSDEQIEEAAKLANAHGFISEFPSG--- 122
            LR  V+ +I Q PVLF+ +VR NI   D  S  +D  + EA + A+    I   P G   
Sbjct: 1308 LR-RVLSIIPQSPVLFSGTVRFNI---DPFSEHNDADLWEALERAHIKDVIDRNPFGLDA 1363

Query: 123  -------------------------------------ALDNESEKLVQAALESACKGRTV 145
                                                 ++D  ++ L+Q  +    K  T+
Sbjct: 1364 EVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTM 1423

Query: 146  LMIAHRLSTVQNADLIVVLQAGQIVE 171
            L+IAHRL+T+ + D I+VL +GQ++E
Sbjct: 1424 LVIAHRLNTIIDCDKILVLSSGQVLE 1449

Length = 1495

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 73.7 bits (181), Expect = 1e-15
 Identities = 61/205 (29%), Positives = 92/205 (44%), Gaps = 41/205 (20%)

Query: 8    LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
            L  +L+  + RI   +KV IVG +G+GKST++    R  +V  G I ++G ++       
Sbjct: 1322 LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRE 1381

Query: 68   LRGNVIGLINQEPVLFATSVRENI----------------------RYG------DS--- 96
            LR     +I Q+PVLF  +VR+N+                      R        DS   
Sbjct: 1382 LR-RQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVL 1440

Query: 97   ------SVSDEQIEEAAK--LANAHGFI-SEFPSGALDNESEKLVQAALESACKGRTVLM 147
                  SV   Q+   A+  L    GFI  +  +  +D   ++ +QA + SA    TV+ 
Sbjct: 1441 EGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVIT 1500

Query: 148  IAHRLSTVQNADLIVVLQAGQIVEM 172
            IAHRL TV   D I+V+  G + EM
Sbjct: 1501 IAHRLHTVAQYDKIIVMDHGAVAEM 1525

Length = 1560

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 73.0 bits (180), Expect = 1e-15
 Identities = 54/219 (24%), Positives = 85/219 (38%), Gaps = 57/219 (26%)

Query: 7   RLKTILKDFNLRIPAGQKVAIVGSSGNGKST----IVALLERFYDVSSGNITISGVDLKH 62
                ++D +  +  G+ + IVG SG+GKST    ++ LL     ++SG + + G DL  
Sbjct: 20  GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG 79

Query: 63  LDGT---WLRGNVIGLINQEPVLFATS----------VRENIRYGDSSVSDEQIEEAAKL 109
           L       LRG  I +I Q+P    TS          +RE +R        E  + A +L
Sbjct: 80  LSEREMRKLRGKRIAMIFQDP---MTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVEL 136

Query: 110 ---------ANAHGFISEF-------------------------PSGALDNESEKLVQAA 135
                         +  +                          P+ ALD  ++  +   
Sbjct: 137 LEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL 196

Query: 136 LESACK--GRTVLMIAHRLSTV-QNADLIVVLQAGQIVE 171
           L+   +  G  VL I H L  V + AD +VV+  G+IVE
Sbjct: 197 LKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235

Length = 539

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 71.0 bits (175), Expect = 2e-15
 Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 45/197 (22%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
            +L+D NL +  G+ VAI+G SG GKST++ L+      +SG + + G  +         
Sbjct: 17  EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG------P 70

Query: 70  GNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFPS- 121
           G  IG + QE  L    +V +N+  G        + + E+ +E  +L    GF  ++P  
Sbjct: 71  GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQ 130

Query: 122 ----------------------------GALDNESEKLVQAALESACK--GRTVLMIAHR 151
                                       GALD  + + +Q  L    +   +TVL++ H 
Sbjct: 131 LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190

Query: 152 LS-TVQNADLIVVLQAG 167
           +   V  AD +VVL   
Sbjct: 191 VDEAVYLADRVVVLSNR 207

Length = 248

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 69.8 bits (172), Expect = 4e-15
 Identities = 56/211 (26%), Positives = 83/211 (39%), Gaps = 47/211 (22%)

Query: 3   GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVD 59
           G        LK  +L I  G+ VAIVG SG+GKST   I+  L+R    +SG + + G D
Sbjct: 11  GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTD 67

Query: 60  LKHLDG---TWLRGNVIGLINQEPVLFAT-SVRENIRYG---DSSVSDEQIEEAAKL--- 109
           +  L        R   IG + Q   L    +  EN+            E+ E A +L   
Sbjct: 68  ISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLER 127

Query: 110 ----ANAHGFISEF-------------------------PSGALDNESEKLVQAALESAC 140
                  + + SE                          P+G LD+E+ K V   L    
Sbjct: 128 VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELN 187

Query: 141 K--GRTVLMIAHRLSTVQNADLIVVLQAGQI 169
           K  G T++++ H     + AD I+ L+ G+I
Sbjct: 188 KEAGTTIVVVTHDPELAEYADRIIELRDGKI 218

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 70.4 bits (173), Expect = 4e-15
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 40/202 (19%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K  LKD +L I  G++V ++G +G+GKST++ LL      +SG + + G+D         
Sbjct: 17  KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE 76

Query: 69  RGNVIGLINQEPV--LFATSVRENIRYGD--SSVSDEQIE----EAAKLANAHGFISEFP 120
               +GL+ Q P   LF  +V + + +G     +  E+IE    EA +L      +   P
Sbjct: 77  LRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP 136

Query: 121 ---SG--------------------------ALDNESEKLVQAALESACK--GRTVLMIA 149
              SG                           LD +  + +   L+   +  G+T++++ 
Sbjct: 137 FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVT 196

Query: 150 HRLSTVQN-ADLIVVLQAGQIV 170
           H L  V   AD +VVL  G+I+
Sbjct: 197 HDLELVLEYADRVVVLDDGKIL 218

Length = 235

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 69.0 bits (170), Expect = 9e-15
 Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 47/212 (22%)

Query: 3   GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62
           G      T L+D +L +  G+ VA+VG SG GKST++ ++      +SG + + G  +  
Sbjct: 11  GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG 70

Query: 63  LDGTWLRGNVIGLINQEPVLFA-TSVRENIRYGDSS--VSDEQIEEAA----KLANAHGF 115
                  G   G + Q+  L    +V +N+  G     V   +  E A    +L    GF
Sbjct: 71  ------PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGF 124

Query: 116 ISEFPS-----------------------------GALDNESEKLVQAALESACK--GRT 144
            + +P                               ALD  + + +Q  L    +  G+T
Sbjct: 125 ENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKT 184

Query: 145 VLMIAHRLS-TVQNADLIVVLQA--GQIVEML 173
           VL++ H +   V  AD +VVL A  G+IV  +
Sbjct: 185 VLLVTHDIDEAVFLADRVVVLSARPGRIVAEV 216

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 11/121 (9%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
            T + D +L I  G+ V ++G SG GK+T++ ++  F   SSG I + G D+  +     
Sbjct: 18  FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-PEK 76

Query: 69  RGNVIGLINQEPVLFAT-SVRENIRYG-------DSSVSDEQIEEAAKLANAHGFISEFP 120
           R   IG++ Q   LF   +V EN+ +G         +    ++EEA +L    GF    P
Sbjct: 77  RP--IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP 134

Query: 121 S 121
            
Sbjct: 135 H 135

Length = 352

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 65.9 bits (162), Expect = 5e-14
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 20/171 (11%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           KT L D +L +  G+   ++G +G GK+T++ ++       SG I + G D+K  +   +
Sbjct: 13  KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK-EPEEV 71

Query: 69  RGNVIGLINQEPVLFAT-SVRENIRYGDSSVSDEQIEEAAKLANAHGFISE----F---P 120
           +   IG + +EP L+   +VREN++    S   +Q     +LA A   + +        P
Sbjct: 72  KRR-IGYLPEEPSLYENLTVRENLKL---SGGMKQ-----RLALAQALLHDPELLILDEP 122

Query: 121 SGALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQI 169
           +  LD ES +     L    K G+T+L+ +H L   +   D + +L  G+I
Sbjct: 123 TSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 67.3 bits (165), Expect = 5e-14
 Identities = 59/224 (26%), Positives = 85/224 (37%), Gaps = 54/224 (24%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDG 65
              L + +L I  G+ + IVG SG+GKST   ++A LE+    SSG+I + G  L     
Sbjct: 20  FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP---SSGSILLDGKPLAPKKR 76

Query: 66  TWLRGNVIGLINQEPVL-------FATSVRENIRYGDSSVSDEQIEEAAKLAN-----AH 113
                  + ++ Q+P             + E +R    S S ++I E             
Sbjct: 77  AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLD 136

Query: 114 GFISEFPSG---------ALDNESEKL------------VQAA----LESACKGR--TVL 146
               E   G         AL  E + L            VQA     L    K R  T L
Sbjct: 137 RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYL 196

Query: 147 MIAHRLSTVQN-ADLIVVLQAGQIVEML--------GQHENTRK 181
            I+H L+ V++  D I V+  GQIVE+           H  TR+
Sbjct: 197 FISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTRE 240

Length = 252

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 66.4 bits (163), Expect = 1e-13
 Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 47/206 (22%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTI---VALLERFYDVSSGNITISGVDLKH-LD 64
           K +LK  +L +  G+ V I+G SG+GKST+   +  LE      SG+IT+ G D+    D
Sbjct: 15  KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDVGDKKD 71

Query: 65  GTWLRGNVIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLAN-----------A 112
              LR  V G++ Q+  LF   +V EN+      V      EA + A            A
Sbjct: 72  ILKLRRKV-GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKA 130

Query: 113 HGFISEF-------------------------PSGALDNESEKLVQAALESACK-GRTVL 146
             + ++                          P+ ALD E    V   ++   + G T++
Sbjct: 131 DAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMI 190

Query: 147 MIAHRLSTVQN-ADLIVVLQAGQIVE 171
           ++ H +   +  AD ++ +  G+I+E
Sbjct: 191 IVTHEMGFAREVADRVIFMDQGKIIE 216

Length = 240

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 41/203 (20%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
           T L D +L IP G+   I+G SG GKST++ L+      +SG++ + G DL  L    LR
Sbjct: 20  TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79

Query: 70  G--NVIGLINQEPVLFAT-SVRENIRYG--DSSVSDEQIEE-AAKLAN-------AHGFI 116
                IG+I Q   L ++ +V EN+ +    + V   +I++  A+L         A  + 
Sbjct: 80  QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP 139

Query: 117 SEFPSG-------------------------ALDNESEKLVQAALESACK--GRTVLMIA 149
           ++   G                         ALD E+ + +   L+   +  G T+++I 
Sbjct: 140 AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLIT 199

Query: 150 HRLSTVQN-ADLIVVLQAGQIVE 171
           H +  V+   D + VL  G++VE
Sbjct: 200 HEMEVVKRICDRVAVLDQGRLVE 222

Length = 339

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 16/124 (12%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDG 65
             +LKD NL I  G+ V ++G SG GKST   ++A LE   + +SG I I G D+  L  
Sbjct: 16  FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE---EPTSGEILIDGRDVTDLP- 71

Query: 66  TWLRGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKLANAHGFISE 118
              RG  I ++ Q   L+   +V ENI +G        +  D++++E AKL      ++ 
Sbjct: 72  PEKRG--IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNR 129

Query: 119 FPSG 122
            P  
Sbjct: 130 KPLQ 133

Length = 338

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 58/197 (29%), Positives = 83/197 (42%), Gaps = 42/197 (21%)

Query: 14  DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVI 73
            F+L +PAG+ VAI+G SG GKST++ L+  F   +SG I I+GVD             +
Sbjct: 17  RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA---ERPV 73

Query: 74  GLINQEPVLFA-TSVRENIRYGDS------SVSDEQIEEAAKLANAHGFISEFP---SG- 122
            ++ QE  LFA  +V +NI  G S      +   E++E AA      GF+   P   SG 
Sbjct: 74  SMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGG 133

Query: 123 -------------------------ALDNESEKLVQAALESAC--KGRTVLMIAHRLSTV 155
                                    ALD      + A +   C  +  T+LM+ H     
Sbjct: 134 QRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDA 193

Query: 156 QN-ADLIVVLQAGQIVE 171
              AD +V L  G+I  
Sbjct: 194 ARIADRVVFLDNGRIAA 210

Length = 231

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 66.0 bits (162), Expect = 2e-13
 Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 14/116 (12%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-----GNITISGVDL--K 61
           K  LKD NL IP  +  A++G SG GKST++  L R  D+       G + + G ++   
Sbjct: 20  KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79

Query: 62  HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG------DSSVSDEQIEEAAKLAN 111
            +D   LR  V G++ Q+P  F  S+ +N+ YG           DE +E + K A 
Sbjct: 80  KVDVVELRRRV-GMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAA 134

Length = 253

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 65.4 bits (160), Expect = 3e-13
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 15/116 (12%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--K 61
           K  LK+ NL IP  Q  A++G SG GKST++  L R  D+       G +   G D+  K
Sbjct: 14  KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDK 73

Query: 62  HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
            +D   LR   +G++ Q+P  F  S+ +NI YG       D    DE +EE+ K A
Sbjct: 74  KIDVVELRRR-VGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKA 128

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 63.7 bits (156), Expect = 8e-13
 Identities = 59/212 (27%), Positives = 88/212 (41%), Gaps = 51/212 (24%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K  LKD +L I  G+ VA++G SG GKST++  L    + +SG++ I G D+  L G  L
Sbjct: 14  KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKAL 73

Query: 69  RG--NVIGLINQEPVLFA-TSVRENI---RYGDSS--------VSDEQIEEAAKLANAHG 114
           R     IG+I Q+  L    SV EN+   R G  S           E+ + A       G
Sbjct: 74  RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVG 133

Query: 115 FISEF---------------------------------PSGALDNESEKLVQAALESAC- 140
            + +                                  P  +LD  S + V   L+    
Sbjct: 134 -LLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINR 192

Query: 141 -KGRTVLMIAHRLSTV-QNADLIVVLQAGQIV 170
            +G TV++  H++    + AD IV L+ G+IV
Sbjct: 193 EEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 63.7 bits (155), Expect = 1e-12
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 10/119 (8%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
             L D NL +P G  VA++G SG+GKST++ ++       SG I ++G D   +     R
Sbjct: 14  QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH---AR 70

Query: 70  GNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFPS 121
              IG + Q   LF   +VR+NI +G        +    ++EE  +L    G    +P+
Sbjct: 71  DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN 129

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 63.3 bits (155), Expect = 1e-12
 Identities = 61/209 (29%), Positives = 87/209 (41%), Gaps = 50/209 (23%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKST----IVALLERFYDVSSGNITISGVDLKHLD 64
           +T+LK  +L +  G+ +AI+G SG+GKST    IV LL       SG + I G D+  L 
Sbjct: 13  RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP----DSGEVLIDGEDISGLS 68

Query: 65  GTWLRG--NVIGLINQEPVLF-ATSVRENIRYG---DSSVSDEQIEEAA--KLA--NAHG 114
              L      +G++ Q   LF + +V EN+ +     + +S+E+I E    KL      G
Sbjct: 69  EAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG 128

Query: 115 FISEFP---SG------------ALDNE---------------SEKLVQAALE-SACKGR 143
               +P   SG            ALD E               S  +           G 
Sbjct: 129 AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGL 188

Query: 144 TVLMIAHRLSTV-QNADLIVVLQAGQIVE 171
           T +M+ H L T    AD I VL  G+IV 
Sbjct: 189 TSIMVTHDLDTAFAIADRIAVLYDGKIVA 217

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 40/200 (20%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TW 67
           +LK  +L I AG+ VAIVG+SG+GKST++ +L      +SG   ++G D+  LD      
Sbjct: 23  VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82

Query: 68  LRGNVIGLINQE---------------PVLFATSVR-----------------ENIRYGD 95
           LR    G I Q                P ++A   R                 + + Y  
Sbjct: 83  LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP 142

Query: 96  SSVSDEQ---IEEAAKLANAHGFI-SEFPSGALDNESEKLVQAALESAC-KGRTVLMIAH 150
           S +S  Q   +  A  L N    I ++ P+GALD+ S + V A L     +G TV+++ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202

Query: 151 RLSTVQNADLIVVLQAGQIV 170
                  A+ ++ ++ G+IV
Sbjct: 203 DPQVAAQAERVIEIRDGEIV 222

Length = 648

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 56/204 (27%), Positives = 88/204 (43%), Gaps = 42/204 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K  + D NL I  G+ + ++G SG+GK+T + ++ R  + +SG I I G D+  LD   L
Sbjct: 14  KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVEL 73

Query: 69  RGNVIGLINQEPVLFA-TSVRENIRY------GDSSVSDEQIEEAAKLAN------AHGF 115
           R   IG + Q+  LF   +V ENI         D     ++ +E   L        A  +
Sbjct: 74  RRK-IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRY 132

Query: 116 ISEF-------------------------PSGALDNESEKLVQAALESACK--GRTVLMI 148
             E                          P GALD  + K +Q  ++   K  G+T++ +
Sbjct: 133 PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFV 192

Query: 149 AHRLSTVQN-ADLIVVLQAGQIVE 171
            H +      AD I V+ AG+IV+
Sbjct: 193 THDIDEALKLADRIAVMDAGEIVQ 216

Length = 309

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 63.0 bits (154), Expect = 2e-12
 Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 47/213 (22%)

Query: 3   GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVD 59
           G+     T LKD +L +P G+   I+G SG GKST    +  LER    +SG++ + G D
Sbjct: 12  GDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP---TSGSVLVDGTD 68

Query: 60  LKHLDGTWLRG--NVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKLA 110
           L  L G  LR     IG+I Q   L ++ +V EN+           +  +E++ E  +L 
Sbjct: 69  LTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELV 128

Query: 111 NAHGFISEFP---SG--------------------------ALDNESEKLVQAALESACK 141
                   +P   SG                          ALD E+ + + A L    +
Sbjct: 129 GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR 188

Query: 142 --GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
             G T+++I H +  V+   D + V++ G++VE
Sbjct: 189 ELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE 221

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 63.7 bits (155), Expect = 3e-12
 Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 42/207 (20%)

Query: 8   LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
            K  + D +L I  G+   I+G SG+GKST V +L R  + ++G I I G ++       
Sbjct: 5   GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVE 64

Query: 68  LRGNV---IGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGFIS 117
           LR      IG++ Q+  LF   ++ +N   G            E+  E  KL     +  
Sbjct: 65  LREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEH 124

Query: 118 EFPS-----------------------------GALDNESEKLVQAALES--ACKGRTVL 146
            +P                               ALD      +Q  L+   A   +T++
Sbjct: 125 RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIV 184

Query: 147 MIAHRL-STVQNADLIVVLQAGQIVEM 172
            I H L   ++  D IV+++AG+IV++
Sbjct: 185 FITHDLDEAIRIGDRIVIMKAGEIVQV 211

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 51/203 (25%), Positives = 81/203 (39%), Gaps = 41/203 (20%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---T 66
           +ILK   L +  G+ VAIVG SG+GKST++A+L    D SSG + + G  L  LD     
Sbjct: 24  SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83

Query: 67  WLRGNVIGLINQEPVLFAT-SVRENIRYG---DSSVSDEQIEEAAKLANAHG-------- 114
            LR   +G + Q   L    +  EN+          S +    A  L  A G        
Sbjct: 84  ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHY 143

Query: 115 ------------------------FISEFPSGALDNESEKLVQAAL--ESACKGRTVLMI 148
                                     ++ P+G LD  +   +   L   +  +G T++++
Sbjct: 144 PAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLV 203

Query: 149 AHRLSTVQNADLIVVLQAGQIVE 171
            H        D  + L++G++VE
Sbjct: 204 THDPQLAARCDRQLRLRSGRLVE 226

Length = 228

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 63.0 bits (154), Expect = 4e-12
 Identities = 54/223 (24%), Positives = 83/223 (37%), Gaps = 68/223 (30%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKST----IVALL-ERFYDVSSGNITISGVDLKHLD 64
             +   +  +  G+ + IVG SG+GKS     I+ LL +    +  G I   G DL  L 
Sbjct: 19  KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78

Query: 65  GTW---LRGNVIGLINQEPVLFATS----------VRENIRYGDSSVSDEQIEEAA---- 107
                 +RG  I +I Q+P    TS          + E +R     +S ++ +E A    
Sbjct: 79  EKELRKIRGKEIAMIFQDP---MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELL 135

Query: 108 ---KLANAHGFISEFP---SG--------------------------ALDNESEKLVQAA 135
               + +    +  +P   SG                          ALD      VQA 
Sbjct: 136 ELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALD----VTVQAQ 191

Query: 136 LES------ACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
           +          KG  +++I H L  V   AD + V+ AG+IVE
Sbjct: 192 ILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVE 234

Length = 316

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 62.2 bits (151), Expect = 4e-12
 Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 52/209 (24%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           LK  NL IPA Q  A++G SG GKST++  L R  D+  G + I+G     +DG  + GN
Sbjct: 19  LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEG-VKITG--KLTMDGEDIYGN 75

Query: 72  V--------IGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA------ 110
           +        +G++ Q+P  F  S+ EN+ YG       D  V DE +E + + A      
Sbjct: 76  IDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV 135

Query: 111 ----NAHGF-----------------------ISEFPSGALDNESEKLVQAALESACKGR 143
                +H F                       + + P+ ALD  +   ++  +E   K  
Sbjct: 136 KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNY 195

Query: 144 TVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
           T++++ H +   +  +D       G++VE
Sbjct: 196 TIVIVTHSMQQARRISDRTAFFLMGELVE 224

Length = 249

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 61.2 bits (149), Expect = 9e-12
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
          +  L D +  +  G+ VA++G +G GKST+ +LL R Y    G I+++G DL+      L
Sbjct: 14 RRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAAL 73

Query: 69 RGNVIGLINQEPVL-FATSVRENIRY 93
              +G++ Q+P L    SVR+N+RY
Sbjct: 74 AR--LGVVFQQPTLDLDLSVRQNLRY 97

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 62.4 bits (151), Expect = 1e-11
 Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 47/175 (26%)

Query: 49   SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAK 108
            +SG I + GVD+   +   LR N+  +++QEP+LF  S+ ENI++G    + E ++ A K
Sbjct: 1275 NSGKILLDGVDICDYNLKDLR-NLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACK 1333

Query: 109  LANAHGFISEFP----------------------------------------SGALDNES 128
             A    FI   P                                        + +LD+ S
Sbjct: 1334 FAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393

Query: 129  EKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVL----QAGQIVEMLGQHE 177
            EKL++  +        +T++ IAHR+++++ +D IVV     + G  V+  G HE
Sbjct: 1394 EKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHE 1448

Length = 1466

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 40/201 (19%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
              LK+ +  I  G+ VAI+G +G+GKSTI  +L       SG I I G+ +   +   +
Sbjct: 22  NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81

Query: 69  RGNVIGLINQEP--VLFATSVRENIRYG------DSSVSDEQIEEAAKLANAHGFI---S 117
           R   IG+I Q P       +V ++I +G            + I++ AK      ++    
Sbjct: 82  RKK-IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP 140

Query: 118 EFPSG------------ALD------NES---------EKLVQAALESACKG-RTVLMIA 149
           +  SG            AL+      +ES          ++ +  ++      +T++ I 
Sbjct: 141 QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISIT 200

Query: 150 HRLSTVQNADLIVVLQAGQIV 170
           H +     AD ++V   G+++
Sbjct: 201 HDMDEAILADKVIVFSEGKLI 221

Length = 271

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 60.3 bits (147), Expect = 1e-11
 Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 39/200 (19%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
           ++   IL D +L + AG+ +A+ G +G GK+T+  +L      SSG+I ++G  +K    
Sbjct: 10  KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK---- 65

Query: 66  TWLRGNVIGLINQEP--VLFATSVRENIRYGDSSVSD--EQIEEAAKLANAHGF------ 115
              R   IG + Q+    LF  SVRE +  G   +    EQ E   K  + +        
Sbjct: 66  AKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPL 125

Query: 116 -----------------------ISEFPSGALDNESEKLVQAA-LESACKGRTVLMIAHR 151
                                  I + P+  LD ++ + V     E A +G+ V++I H 
Sbjct: 126 SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHD 185

Query: 152 LSTVQN-ADLIVVLQAGQIV 170
              +    D +++L  G IV
Sbjct: 186 YEFLAKVCDRVLLLANGAIV 205

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 28/140 (20%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--KHLD 64
           LK+ NL I   Q  A +G SG GKST++    R Y++     + G I + G ++     D
Sbjct: 29  LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88

Query: 65  GTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLANAHGFIS 117
              LR  V G++ Q+P  F  S+ +NI +G         +  DE++E A           
Sbjct: 89  IALLRAKV-GMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALT--------- 138

Query: 118 EFPSGALDNE-SEKLVQAAL 136
                AL NE  +KL Q+  
Sbjct: 139 ---KAALWNEVKDKLHQSGY 155

Length = 260

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 59.9 bits (145), Expect = 2e-11
 Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 42/194 (21%)

Query: 15  FNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG 74
           F+L +  G+ VAI+G SG GKST++ L+  F + +SG+I ++     H  G       + 
Sbjct: 17  FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQS--HT-GLAPYQRPVS 73

Query: 75  LINQEPVLFA-TSVRENIRYGD------SSVSDEQIEEAA-------------------- 107
           ++ QE  LFA  +VR+NI  G       ++   E++ +AA                    
Sbjct: 74  MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQ 133

Query: 108 --KLANAHGFISEFPS-------GALDNESEKLVQAALESAC--KGRTVLMIAHRLS-TV 155
             ++A A   +   P         ALD    + + A ++  C  + RT+LM+ H LS   
Sbjct: 134 RQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDAR 193

Query: 156 QNADLIVVLQAGQI 169
             A  I V+  G+I
Sbjct: 194 AIASQIAVVSQGKI 207

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 38/89 (42%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
              LKD NL I  G+ VAI+G SG GKST++  L    D +SG I  +GV +  L G  L
Sbjct: 17  HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76

Query: 69  RGNV--IGLINQEPVLFA-TSVRENIRYG 94
           R     IG+I Q+  L    SV EN+  G
Sbjct: 77  RKLRRDIGMIFQQFNLVPRLSVLENVLLG 105

Length = 258

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 15/113 (13%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--KHLD 64
           LK  NL I   Q  A++G SG GKST +  L R  D+       G + + G D+    +D
Sbjct: 19  LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78

Query: 65  GTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
              LR  V G++ Q+P  F  S+ +N+ YG       D    DE +E++ K A
Sbjct: 79  VNQLRKRV-GMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGA 130

Length = 250

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 59.9 bits (146), Expect = 5e-11
 Identities = 55/238 (23%), Positives = 88/238 (36%), Gaps = 66/238 (27%)

Query: 3   GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG--VDL 60
              R     + D +  +  G+ + +VG SG+GKST+  +L      SSG+I   G  +DL
Sbjct: 298 VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357

Query: 61  KHLDGTWLRGNVIGLINQEPVLFAT-----SVRENI-------RYGDSSVSDEQIEEAAK 108
              +   LR  +  ++ Q+P  +++     +V + +         G  +    ++ E  +
Sbjct: 358 TGGELRRLRRRIQ-MVFQDP--YSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLE 414

Query: 109 L-----ANAHGFISEF-------------------------PSGALDNESEKLVQAA-LE 137
           L          +  E                          P  ALD      VQA  L 
Sbjct: 415 LVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALD----VSVQAQVLN 470

Query: 138 SACK-----GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM--------LGQHENTRK 181
                    G T L I+H L+ V+  AD + V+  G+IVE           QH  TRK
Sbjct: 471 LLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRK 528

Length = 539

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 68/238 (28%), Positives = 92/238 (38%), Gaps = 69/238 (28%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKS----TIVALLERFYDVS-SGNITISGVDLKHL 63
              +K  +  I AG+ +A+VG SG+GKS    +I+ LL        SG+I   G DL   
Sbjct: 23  VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82

Query: 64  DGTWL---RGNVIGLINQEPVLFATS----------VRENIRYGDSSVSDEQIEEAA--- 107
               L   RGN IG+I QEP+   TS          + E +R     +S       A   
Sbjct: 83  SERQLRGVRGNKIGMIFQEPM---TSLNPLHTIGKQLAEVLRL-HRGLSRAAARARALEL 138

Query: 108 ----KLANAHGFISEFP---SG----------ALDNESEKL------------VQAALES 138
                +      +  +P   SG          AL NE + L            VQA +  
Sbjct: 139 LELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD 198

Query: 139 ACK------GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE--------MLGQHENTRK 181
             K      G  +L I H L  V+  AD + V+Q G+IVE           QH  TRK
Sbjct: 199 LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTRK 256

Length = 534

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 58.4 bits (142), Expect = 5e-11
 Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 48/200 (24%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDG 65
           K IL D NL I  G+  AI+G SG+GKST   I+ LLE+F    SG + ++G +   L+ 
Sbjct: 11  KVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF---DSGQVYLNGQETPPLNS 67

Query: 66  ----TWLRGNVIGLINQEPVLFAT-SVRENIR----YGDSSVSDEQ---IE--------- 104
                + R   +G + Q   L    +V EN+     Y   S  +++    E         
Sbjct: 68  KKASKFRR-EKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL 126

Query: 105 ------------EAAKLANAHGFISEF-------PSGALDNE-SEKLVQAALESACKGRT 144
                       E  ++A A   +          P+G+LD +  ++++   LE   +G+T
Sbjct: 127 KLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKT 186

Query: 145 VLMIAHRLSTVQNADLIVVL 164
           ++++ H     + AD ++ L
Sbjct: 187 IIIVTHDPEVAKQADRVIEL 206

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 59.4 bits (144), Expect = 6e-11
 Identities = 49/198 (24%), Positives = 92/198 (46%), Gaps = 40/198 (20%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           LK  +L IP G K A++G +G GKST++  L   Y    G + + G ++   +  W+R  
Sbjct: 21  LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80

Query: 72  VIGLINQEP--VLFATSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFP--- 120
           V GL+ Q+P   +F+++V +++ +G      D    + ++EEA K      F  + P   
Sbjct: 81  V-GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHL 139

Query: 121 ----------SGALDNESEKLV----QAALESACK-------------GRTVLMIAHRLS 153
                     +G L  + + +V     A L+   +             G+TV++  H + 
Sbjct: 140 SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199

Query: 154 -TVQNADLIVVLQAGQIV 170
              + AD ++VL+ G+++
Sbjct: 200 LAAEWADQVIVLKEGRVL 217

Length = 274

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 58.4 bits (142), Expect = 6e-11
 Identities = 44/197 (22%), Positives = 81/197 (41%), Gaps = 37/197 (18%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K +L D +L +  G+    +G +G GK+T + ++       SG IT  G   +       
Sbjct: 13  KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL- 71

Query: 69  RGNVIGLINQEPVLFAT-SVRENIRYGDS--SVSDEQIEEA------------------- 106
               IG + + P  +   + REN+R       +  ++I+E                    
Sbjct: 72  --RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSL 129

Query: 107 ---AKLANAHGFIS--EF-----PSGALDNESEKLVQAALES-ACKGRTVLMIAHRLSTV 155
               +L  A   +   +      P+  LD +  K ++  + S   +G TVL+ +H LS +
Sbjct: 130 GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEI 189

Query: 156 QN-ADLIVVLQAGQIVE 171
           Q  AD I ++  G+++E
Sbjct: 190 QKVADRIGIINKGKLIE 206

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 58.8 bits (142), Expect = 6e-11
 Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 15/114 (13%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-----GNITISGVDL--KHL 63
           ILK+ NL IP     A++G SG GKST +  L R  D+       G+I + GVD+    +
Sbjct: 18  ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77

Query: 64  DGTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
           D   LR  V G++ Q+P  F  S+ +N+ YG       D    +E++EE+ K A
Sbjct: 78  DVVELRKKV-GMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAA 130

Length = 250

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 58.5 bits (142), Expect = 8e-11
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
          K  + + NL I  G+ + ++G SG+GK+T + ++ R  + +SG I I G D++  D   L
Sbjct: 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVEL 73

Query: 69 RGNVIGLINQEPVLFA-TSVRENI 91
          R   IG + Q+  LF   +V ENI
Sbjct: 74 RRK-IGYVIQQIGLFPHMTVEENI 96

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 15/116 (12%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--K 61
           K  L D ++RIP  +  A +G SG GKST++    R  D+       G I + G ++  K
Sbjct: 38  KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDK 97

Query: 62  HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
            +D   LR  V G++ Q P  F  S+ EN+ YG       +  V DE +E + + A
Sbjct: 98  KVDVAELRRRV-GMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGA 152

Length = 272

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 56.3 bits (137), Expect = 2e-10
 Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 31/170 (18%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
             L   +L +  G+  A++G +G GKST++ +L   Y   SG I + G            
Sbjct: 14  KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG------------ 61

Query: 70  GNVIGLINQEPVLFATSVRENIRYGDS-----SVSDEQIEEAAK--LANAHGFISEFPSG 122
                    + V FA S R+  R G +     SV + Q+ E A+    NA   I + P+ 
Sbjct: 62  ---------KEVSFA-SPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLILDEPTA 111

Query: 123 AL-DNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 170
           AL   E E+L +       +G  V+ I+HRL  V   AD + VL+ G++V
Sbjct: 112 ALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 54.6 bits (132), Expect = 3e-10
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 36  STIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIRYG 94
           ST++ L+      +SG I + G D   L    L    IG++ Q+P LF   +VREN+ +G
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60

Query: 95  -DSSVSDEQIEEAAKLANAHGFISEFPSGAL 124
                +D + EEA +      F+   P G L
Sbjct: 61  LRDKEADARAEEALERVGLPDFLDREPVGTL 91

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 10/108 (9%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
            T L D NL I  G+ V ++G SG GK+T + ++    + +SG I I G D+  L     
Sbjct: 13  VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK-D 71

Query: 69  RGNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKL 109
           R   I ++ Q   L+   +V +NI +G           DE++ E A+L
Sbjct: 72  RD--IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAEL 117

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 15/116 (12%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--K 61
              L D +L     Q  A++G SG GKST +  L R  D+       G I + G ++   
Sbjct: 19  FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78

Query: 62  HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
           H+D   LR  V G++ Q+P  F  S+ EN+ YG       D +   E++E + + A
Sbjct: 79  HVDVVELRRRV-GMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHA 133

Length = 253

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 56.3 bits (137), Expect = 3e-10
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 18/86 (20%)

Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKST-IVALL-ERFYDVSSGNITISGVDLKHLDGTWL 68
           LKD NL +P G+ VAIVG  G+GKS+ + ALL E   +  SG++++ G           
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE--LEKLSGSVSVPG----------- 66

Query: 69 RGNVIGLINQEPVLFATSVRENIRYG 94
              I  ++QEP +   ++RENI +G
Sbjct: 67 ---SIAYVSQEPWIQNGTIRENILFG 89

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 42/187 (22%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL--ERFYDVSSGNITISGVDLKHLDGT 66
           K +LK+ + +   G+  AI+G SG GKST++  L   R     SG + I+G  L     +
Sbjct: 22  KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD--KRS 79

Query: 67  WLRGNVIGLINQEPVLFAT-SVRENIRYGDSSVSDEQIEEAAKLANAHG----------- 114
           +    +IG + Q+ +L  T +VRE + +            AAKL    G           
Sbjct: 80  F--RKIIGYVPQDDILHPTLTVRETLMF------------AAKLRGLSGGERKRVSIALE 125

Query: 115 --------FISEFPSGALDNESEKLVQAALESACK-GRTVLMIAHRLST--VQNADLIVV 163
                   F+ E  SG LD+ S   V + L      GRT++   H+ S+   +  D +++
Sbjct: 126 LVSNPSLLFLDEPTSG-LDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLL 184

Query: 164 LQAGQIV 170
           L  G+++
Sbjct: 185 LSQGRVI 191

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 42/196 (21%)

Query: 14  DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVI 73
            F+L    G+  AIVG SG+GKST++ L+  F    SG + I+GVD+            +
Sbjct: 16  HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPA---DRPV 72

Query: 74  GLINQEPVLFA-TSVRENIRYGDS------SVSDEQIEEAAKLANAHGFISEFPSGALDN 126
            ++ QE  LFA  +V +N+  G S      +   + IE A       G     P      
Sbjct: 73  SMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGG 132

Query: 127 ESEK------LVQ-----------AALESACK--------------GRTVLMIAHRLSTV 155
           E ++      LV+           AAL+ A +                TVLM+ H+    
Sbjct: 133 ERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDA 192

Query: 156 QN-ADLIVVLQAGQIV 170
           +  A  +V L  G+I 
Sbjct: 193 KRLAQRVVFLDNGRIA 208

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 46/205 (22%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
              L   +L I  G+   ++G SG GK+T++ L+  F   +SG I + G D+ +L     
Sbjct: 13  FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-PHK 71

Query: 69  RGNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFPS 121
           R   +  + Q   LF   +V ENI +G        +   E++ EA  L    G+ +  PS
Sbjct: 72  RP--VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPS 129

Query: 122 -----------------------------GALDNESEKLVQAALESACK--GRTVLMIAH 150
                                        GALD +  K +Q  L+   K  G T + + H
Sbjct: 130 QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTH 189

Query: 151 RLS---TVQNADLIVVLQAGQIVEM 172
                 T+  +D I V+  G+I ++
Sbjct: 190 DQEEALTM--SDRIAVMNKGKIQQI 212

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 56.8 bits (138), Expect = 4e-10
 Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 53/210 (25%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           + IL   +L +P G+ +AI+G SG+GKST++ L+        G I I G D+  L    L
Sbjct: 21  RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL 80

Query: 69  R--GNVIGLINQEPVLF-ATSVRENIRYG---DSSVSDEQIEEAAKL---------ANAH 113
                 +G++ Q+  LF + +V EN+ +     + + +  I E   +         A A 
Sbjct: 81  YEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAAD 140

Query: 114 GFISEFPSG-----------ALD------------------NESEKLV---QAALESACK 141
            + SE   G           ALD                     ++L+     AL     
Sbjct: 141 LYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL--- 197

Query: 142 GRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 170
             TV+M+ H L ++   AD + VL  G+++
Sbjct: 198 --TVIMVTHDLDSLLTIADRVAVLADGKVI 225

Length = 263

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 56.7 bits (137), Expect = 4e-10
 Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 8/93 (8%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--K 61
           K  L D +L IP     A +G SG GKST +  L R  D       +G IT+ G D+   
Sbjct: 32  KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDP 91

Query: 62  HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG 94
            LD   LR  V G++ Q+P  F  S+ EN+ YG
Sbjct: 92  RLDVVELRARV-GMVFQKPNPFPKSIYENVAYG 123

Length = 267

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 59/197 (29%), Positives = 90/197 (45%), Gaps = 38/197 (19%)

Query: 8   LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
           LK I  DF L   AG+  A++G +G GKST++ ++       SG + I G     L    
Sbjct: 27  LKGI--DFTLH--AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAK 82

Query: 68  LRGNVIGLINQEPVLFAT-SVRENIRYG------------------------DSS----- 97
                I L+ QEP+LF   SV+ENI +G                        DSS     
Sbjct: 83  AHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLE 142

Query: 98  VSDEQIEEAAK--LANAHGFISEFPSGALD-NESEKLVQAALESACKGRTVLMIAHRLST 154
           V+D QI E  +  + ++   I + P+ +L   E+E+L     E   +G  ++ I+H+L  
Sbjct: 143 VADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPE 202

Query: 155 V-QNADLIVVLQAGQIV 170
           + Q AD I V++ G I 
Sbjct: 203 IRQLADRISVMRDGTIA 219

Length = 510

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 56.4 bits (137), Expect = 6e-10
 Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 12/119 (10%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K IL D +  IP G+   I+G +G+GKST++  L       SG + + G D+  L    L
Sbjct: 15  KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKEL 74

Query: 69  RGNVIGLINQEPVL-FATSVRENIRYG---------DSSVSDEQI-EEAAKLANAHGFI 116
               +  + Q P   F  +V E +  G           S  DE+I EEA +L       
Sbjct: 75  AKK-LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA 132

Length = 258

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 39/201 (19%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K  L D NL +  G+ + I+G +G+GKSTI   +      S G + + G+D    +  W 
Sbjct: 23  KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82

Query: 69  RGNVIGLINQEP--VLFATSVRENIRYGDSS--VSDEQI----EEAAKLANAHGF----- 115
             N  G++ Q P   + AT V E++ +G  +  +  E+I    +E+ K    + +     
Sbjct: 83  IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP 142

Query: 116 ------------------------ISEFPSGALDNESEKLVQAALESACK--GRTVLMIA 149
                                   I + P+  LD    + V   ++   K  G T+++I 
Sbjct: 143 HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILIT 202

Query: 150 HRLSTVQNADLIVVLQAGQIV 170
           H +     AD I+V+ +G++V
Sbjct: 203 HYMEEAVEADRIIVMDSGKVV 223

Length = 280

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 7/108 (6%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL--KHLDGT 66
           K  L + N+ I  G+ V ++G +G+GKST++  L      +SG I I GVD+  K +  +
Sbjct: 20  KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLS 79

Query: 67  WLRGNVIGLINQEP--VLFATSVRENIRYGDSS--VSDEQIEEAAKLA 110
            +R  V GL+ Q P   LF  ++ ++I +G  +  +S+E+IE   K A
Sbjct: 80  DIRKKV-GLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRA 126

Length = 287

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 49/207 (23%)

Query: 3   GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62
           G        LKD +  I  G++V I+G +G GKST++ L+   Y  +SG + ++G     
Sbjct: 34  GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG----- 88

Query: 63  LDGTWLRGNVIGLINQEPVLFATSVRENIR-----YGDS-SVSDEQIEEAAKLANAHGFI 116
                L     G   +       + RENI       G +    DE+++E  + A    FI
Sbjct: 89  -KVAPLIELGAGFDPE------LTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI 141

Query: 117 SE----FPSG---------ALDNESEKL----VQAALESA----C---------KGRTVL 146
            +    + SG         A   E + L    V A  ++A    C         K +T++
Sbjct: 142 DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIV 201

Query: 147 MIAHRLSTV-QNADLIVVLQAGQIVEM 172
           +++H L  + Q  D  + L+ GQI   
Sbjct: 202 LVSHDLGAIKQYCDRAIWLEHGQIRME 228

Length = 249

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 49/211 (23%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDL--K 61
           K  +K+  ++I   Q  AI+G SG GK+T++  + R  D        G I   G D+   
Sbjct: 16  KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDP 75

Query: 62  HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA---- 110
            LD T  R  V G++ Q+P  F  S+ +N+ +G            D  +EE+ K A    
Sbjct: 76  QLDVTEYRKKV-GMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD 134

Query: 111 ------NAHGF-----------------------ISEFPSGALDNESEKLVQAALESACK 141
                 N  G                        + + P+ ALD  + + ++  LE   +
Sbjct: 135 EVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE 194

Query: 142 GRTVLMIAHRLS-TVQNADLIVVLQAGQIVE 171
             T++++ H +   ++ AD I  +  G+++E
Sbjct: 195 NYTIVIVTHNIGQAIRIADYIAFMYRGELIE 225

Length = 250

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 64/211 (30%), Positives = 92/211 (43%), Gaps = 49/211 (23%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K  LK+ NL I  G+ VAI+G SG GKST++  + R  + SSG+I + G D+  L G  L
Sbjct: 15  KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKL 74

Query: 69  RG--NVIGLINQEPVLFA-TSVRENI---RYGDSSV--------SDEQIEEA-------- 106
           R     IG+I Q   L    +V EN+   R G            S+E  E A        
Sbjct: 75  RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVG 134

Query: 107 -AKLA-----------------------NAHGFISEFPSGALDNESEKLVQAALESACK- 141
            A  A                            +++ P  +LD ++ K V   L+   K 
Sbjct: 135 LADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE 194

Query: 142 -GRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 170
            G TV++  H++   +  AD IV L+AG+IV
Sbjct: 195 DGITVIINLHQVDLAKKYADRIVGLKAGEIV 225

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 54.1 bits (131), Expect = 2e-09
 Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 20/178 (11%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--YDVSSGNITISGVDLKHLDGT 66
           K ILK  NL I  G+  A++G +G+GKST+   +     Y+V+ G I   G D+  L   
Sbjct: 13  KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE 72

Query: 67  WLRGNVIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEA---------AKLANAHGFI 116
                 I L  Q P         + +RY +   S  + +             LA     +
Sbjct: 73  ERARLGIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLA----IL 128

Query: 117 SEFPSGALDNESEKLVQAALES-ACKGRTVLMIAH--RLSTVQNADLIVVLQAGQIVE 171
            E  SG LD ++ +LV   +     +G++VL+I H  RL      D + VL  G+IV+
Sbjct: 129 DEPDSG-LDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK 185

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 53.9 bits (129), Expect = 4e-09
 Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 46/208 (22%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS---GNITISGVDLKHLDG 65
           K  L D N++I   +  A++G+SG GKST +    R  D  +   G + I G D+K+ D 
Sbjct: 15  KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74

Query: 66  TWLRGNVIGLINQEPVLFATSVRENIRYG-------------DSSVSD--------EQIE 104
             LR NV G++ Q+P +F  S+ ENI Y              ++ V D        E+++
Sbjct: 75  VALRKNV-GMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133

Query: 105 EAAK---LANAHG-----------------FISEFPSGALDNESEKLVQAALESACKGRT 144
           +  K   LA + G                  + + P+ ALD  S  +++  L+      +
Sbjct: 134 DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLS 193

Query: 145 VLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
           ++M+ H +   +  AD       G+++E
Sbjct: 194 MIMVTHNMQQGKRVADYTAFFHLGELIE 221

Length = 246

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 9/108 (8%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K IL D +L +P G+  A++G +G GKST++    R     SG + +    +  L    L
Sbjct: 15  KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQL 74

Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDS---------SVSDEQIEEAA 107
              +  L          +VRE + YG S         S  D      A
Sbjct: 75  ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQA 122

Length = 255

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 53.3 bits (129), Expect = 5e-09
 Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 10/108 (9%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTI---VALLERFYDVSSGNITISGVDLKHLDG 65
             +LK  +L +  G+ V I+G SG+GKST+   + LLE      SG I I G+ L     
Sbjct: 13  FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP---DSGTIIIDGLKLTDDKK 69

Query: 66  TW--LRGNVIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLA 110
               LR  V G++ Q+  LF   +V ENI      V      EA + A
Sbjct: 70  NINELRQKV-GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERA 116

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 53.2 bits (129), Expect = 6e-09
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 2/105 (1%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           +T+L D +L +  G+ VAI+G +G GKST++  L       SG + ++G  L        
Sbjct: 15  RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSP-AE 73

Query: 69  RGNVIGLINQEPVL-FATSVRENIRYGDSSVSDEQIEEAAKLANA 112
                 ++ Q   L F  +V E +  G +     + E+ A +A A
Sbjct: 74  LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAA 118

Length = 258

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 42/202 (20%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL--- 68
           + D +L +  G+   I+G SG+GKST++  + R  + +SG + I G D+  +    L   
Sbjct: 40  VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99

Query: 69  RGNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFP- 120
           R   I ++ Q   L    +V EN+ +G        +  +E+  EA +L    G+  ++P 
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD 159

Query: 121 --SG----------ALDNESEKLVQ----AALE--------------SACKGRTVLMIAH 150
             SG          AL  + + L+     +AL+               A   +T++ I H
Sbjct: 160 ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITH 219

Query: 151 RLS-TVQNADLIVVLQAGQIVE 171
            L   ++  D I +++ G++V+
Sbjct: 220 DLDEALRLGDRIAIMKDGRLVQ 241

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 52.8 bits (127), Expect = 7e-09
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 5/84 (5%)

Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WL 68
          L   N+ I AG+ V +VG SG GKST++ L+ +    +SG I ++G D+  L G    +L
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76

Query: 69 RGNVIGLINQEPVLFAT-SVRENI 91
          R   IG++ Q+  L    +V EN+
Sbjct: 77 RRK-IGVVFQDFRLLPDRNVYENV 99

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 53.1 bits (127), Expect = 7e-09
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 8/93 (8%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-----GNITISGVDL--K 61
           K  LK+ +++IP     A++G SG GKST +  L R  D+       G ++I G D+   
Sbjct: 25  KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84

Query: 62  HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG 94
            +D   LR NV G++ Q+P  F  S+ +N+ YG
Sbjct: 85  DVDVVELRKNV-GMVFQKPNPFPMSIYDNVAYG 116

Length = 258

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 53.0 bits (128), Expect = 8e-09
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--YDVSSGNITISGVDLKHLDGT 66
           K ILK  NL +  G+  AI+G +G+GKST+   +     Y+V+ G I   G D+  L   
Sbjct: 17  KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPD 76

Query: 67  WLRGNVIGLINQEPV--------LFATSVRENIRYGDSSVSD--EQIEEAAKL 109
                 I L  Q PV         F  +     R     + +  ++++E A+L
Sbjct: 77  ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAEL 129

Length = 251

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 52.1 bits (126), Expect = 8e-09
 Identities = 24/56 (42%), Positives = 33/56 (58%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD 64
          +T+L D +L I AG+ V I+G +G GKST++  L      SSG I + G DL  L 
Sbjct: 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS 67

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 53.3 bits (129), Expect = 8e-09
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDGTWL 68
          L + +L IPAG+   ++G+SG GKST    + LLER    +SG + + G DL  L    L
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKEL 77

Query: 69 R 69
          R
Sbjct: 78 R 78

Length = 343

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 53.0 bits (128), Expect = 9e-09
 Identities = 52/183 (28%), Positives = 76/183 (41%), Gaps = 28/183 (15%)

Query: 5   LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD 64
            +R    +   +  I  G+ + +VG SG GKST+  L+    + +SG I   G D+  L 
Sbjct: 22  KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS 81

Query: 65  GTWLRGNVIGLINQEPVLFATSVRENI--RYGDSSVSDEQIEEAAKLANAHGFISEF--- 119
               R  V+ L      L    + E    RY    +S  Q +    +A A     +    
Sbjct: 82  KEERRERVLEL------LEKVGLPEEFLYRY-PHELSGGQRQRIG-IARALALNPKLIVA 133

Query: 120 --PSGALDNESEKLVQA-------ALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQI 169
             P  ALD      VQA        L+    G T L I+H LS V+  +D I V+  G+I
Sbjct: 134 DEPVSALD----VSVQAQILNLLKDLQEE-LGLTYLFISHDLSVVRYISDRIAVMYLGKI 188

Query: 170 VEM 172
           VE+
Sbjct: 189 VEI 191

Length = 268

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 45/204 (22%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           LK  NL +  G+  A++G +G GKST++ +L   ++ + G ITI+ ++   LD       
Sbjct: 21  LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80

Query: 72  VIGLINQE-PVLFATSVRENI--------------------------------------- 91
            IG+I QE  V+   +V EN+                                       
Sbjct: 81  GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLD 140

Query: 92  -RYGDSSVSDEQIEEAAK--LANAHGFISEFPSGALDN-ESEKLVQAALESACKGRTVLM 147
            +  + S+S +Q+ E AK  + +A   I + P+ +L N E + L     +   +G  ++ 
Sbjct: 141 EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVY 200

Query: 148 IAHRLSTVQN-ADLIVVLQAGQIV 170
           I+H+L+ ++   D   V++ G  V
Sbjct: 201 ISHKLAEIRRICDRYTVMKDGSSV 224

Length = 510

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 53/207 (25%), Positives = 85/207 (41%), Gaps = 53/207 (25%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISG---VDLKHLDG 65
           L D +L I +G+ VA++G SG GKST   I+A LE      +G I ++G    D+ +L  
Sbjct: 18  LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLA- 73

Query: 66  TWLRGNVIGLINQEPVLFA-TSVRENIRYG--------DSSVSDEQIEEAAKLANAHGFI 116
             +R   +G + Q   LF   +V +NI +G          +    ++EE  +L    G  
Sbjct: 74  --VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA 131

Query: 117 SEF-----------------------------PSGALDNESEKLVQAALES--ACKGRTV 145
             +                             P GALD +  K ++  L       G T 
Sbjct: 132 DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191

Query: 146 LMIAHRLS-TVQNADLIVVLQAGQIVE 171
           + + H     ++ AD +VVL  G+I +
Sbjct: 192 VFVTHDQEEALELADRVVVLNQGRIEQ 218

Length = 345

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 15/116 (12%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--K 61
           K  L D NL I   +  A++G SG GKST +  L R  D+       G + + G ++  K
Sbjct: 17  KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76

Query: 62  HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
            +D   LR  V G++ Q+P  F  S+ +N+ YG       D    D+ +E A K A
Sbjct: 77  DVDVVELRKRV-GMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKA 131

Length = 251

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 20/34 (58%), Positives = 26/34 (76%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL 42
          +T+L   +L IPAGQ VA+VG SG GKST++ LL
Sbjct: 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLL 58

Length = 257

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 8/90 (8%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--KHLD 64
           +K+  L IP  Q  A +G SG GKSTI+    R  D+       G +T  G +L    +D
Sbjct: 26  VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85

Query: 65  GTWLRGNVIGLINQEPVLFATSVRENIRYG 94
              +R   IG++ Q+P  F  S+ +NI YG
Sbjct: 86  PVEVRRR-IGMVFQKPNPFPKSIYDNIAYG 114

Length = 264

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 12/85 (14%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
              LKD +  +P G+++ ++G +G GKST++ LL   Y   SG +T+ G        + L
Sbjct: 35  FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV------SSL 88

Query: 69  RGNVIGLINQEPVLFATSVRENIRY 93
            G   G     P L   + RENI  
Sbjct: 89  LGLGGGF---NPEL---TGRENIYL 107

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 42/201 (20%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           L   +L +  G+  A++G +G GKST++ +L   Y   SG I I G  +           
Sbjct: 24  LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83

Query: 72  VIGLINQEPVLFAT-SVRENI---------------------------RYGDS------- 96
            I  ++QE  L    SV ENI                           R G         
Sbjct: 84  GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV 143

Query: 97  ---SVSDEQIEEAAK--LANAHGFISEFPSGALD-NESEKLVQAALESACKGRTVLMIAH 150
              S++  Q+ E A+    +A   I + P+ AL   E+E+L         +G  ++ I+H
Sbjct: 144 GDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISH 203

Query: 151 RLSTV-QNADLIVVLQAGQIV 170
           RL  V + AD I VL+ G++V
Sbjct: 204 RLDEVFEIADRITVLRDGRVV 224

Length = 500

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 10/119 (8%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL--- 68
           + D +L +  G+   I+G SG+GKST+V LL R  + + G I + G D+  L    L   
Sbjct: 44  VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103

Query: 69  RGNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFP 120
           R   I ++ Q   L    +V EN+ +G        +  +E+  EA +L    G+  ++P
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP 162

Length = 386

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL 63
          K ++ + +L I  G+ + ++G SG GK+T++ L+  F    SG I + G D+ H+
Sbjct: 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHV 81

Length = 375

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK 61
          K +L D +L IP G   +I+G +G GKST+++++ R     SG ITI G++L 
Sbjct: 14 KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELT 66

Length = 252

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
          K  L   +L I  G  V ++GS+G GKST++  +      +SG I I GVD+        
Sbjct: 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKK-SVAK 77

Query: 69 RGNVIGLINQEP 80
          R N++  + Q+P
Sbjct: 78 RANLLARVFQDP 89

Length = 263

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 13/111 (11%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--KHLD 64
           L D ++ IP  Q  A++G SG GKST +  + R  D+       G +T  G ++    +D
Sbjct: 55  LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114

Query: 65  GTWLRGNVIGLINQEPVLFATSVRENIRYG-----DSSVSDEQIEEAAKLA 110
              LR   IG++ Q+P  F  S+ +N+ YG          DE++EE+ + A
Sbjct: 115 PVALRRR-IGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRA 164

Length = 285

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.1 bits (122), Expect = 4e-08
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 15/113 (13%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--KHLD 64
           LK  +L     +  A++G SG GKST +  L R  D+      +GN+++ G ++   + D
Sbjct: 21  LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80

Query: 65  GTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
              LR  V G++ Q+P  F  S+ EN+ YG       D +V DE +E + K A
Sbjct: 81  VVQLRKQV-GMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQA 132

Length = 252

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 51.0 bits (123), Expect = 4e-08
 Identities = 52/212 (24%), Positives = 78/212 (36%), Gaps = 51/212 (24%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
           T + D +L +  G+ V ++G +G GK+T+  L+  FY  SSG +   G D+  L    + 
Sbjct: 18  TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA 77

Query: 70  GNVIGLINQEPVLFAT-SVRENIRYGDSSVS---------------DEQIEEAAKL---- 109
              I    Q   LF   +V EN+  G  +                  E  E A +L    
Sbjct: 78  RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137

Query: 110 ---ANAHGFISEFPSGA------------------LD--------NESEKLVQAALE-SA 139
                A         G                   LD         E+E+L +   E   
Sbjct: 138 GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD 197

Query: 140 CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 170
             G T+L+I H +  V   AD IVVL  G+++
Sbjct: 198 RGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229

Length = 250

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 48/200 (24%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           + +L+D +L +  G+  A++G +G GKST++  +      SSG I I G  ++       
Sbjct: 17  RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRK----RR 72

Query: 69  RGNVIGLINQEPVL---FATSVRENIRYGD----------SSVSDEQIEEAAKLANAHGF 115
           +   IG + Q+  +   F  +V++ +  G           +    E+++EA +       
Sbjct: 73  KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDL 132

Query: 116 ----ISEF-------------------------PSGALDNESEKLVQAAL-ESACKGRTV 145
               I E                          P   +D   +K +   L E   +G+TV
Sbjct: 133 RDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTV 192

Query: 146 LMIAHRLSTV-QNADLIVVL 164
           LM+ H L  V    D ++ L
Sbjct: 193 LMVTHDLGLVMAYFDRVICL 212

Length = 254

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 52/187 (27%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           +T+L + N  +  G+++ I G SG GK++++  L   +   SG I++             
Sbjct: 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP------------ 453

Query: 69  RGNVIGLINQEPVLFATSVRENIRY--GDSSVSDEQIEEA------AKLANAHG------ 114
             + +  + Q P L   ++RE + Y       SD ++           LA          
Sbjct: 454 ADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWD 513

Query: 115 ------------------------FISEFPSGALDNESEKLVQAALESACKGRTVLMIAH 150
                                   F+ E  S ALD E+E  +   L+      TV+ + H
Sbjct: 514 RVLSGGEQQRLAFARLLLHKPKWVFLDEATS-ALDEETEDRLYQLLKEELPDATVISVGH 572

Query: 151 RLSTVQN 157
           R  T+ N
Sbjct: 573 R-PTLWN 578

Length = 604

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.6 bits (121), Expect = 6e-08
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 29/138 (21%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDL--KHLD 64
           +K+    IP G+  A++G SG GKST++  L R  D+       G +   G DL    +D
Sbjct: 29  VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88

Query: 65  GTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGAL 124
              +R   IG++ Q+P  F  S+ ENI +G               A  +G+     +G +
Sbjct: 89  PVEVRRR-IGMVFQQPNPFPKSIYENIAFG---------------ARINGY-----TGDM 127

Query: 125 DNESEK-LVQAALESACK 141
           D   E+ L +AA+   CK
Sbjct: 128 DELVERSLRKAAVWDECK 145

Length = 269

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.4 bits (120), Expect = 6e-08
 Identities = 56/217 (25%), Positives = 85/217 (39%), Gaps = 53/217 (24%)

Query: 3   GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISG 57
           GN   L  I  DF  +    +  A++G SG GKST +  L R  D       +G I   G
Sbjct: 15  GNYEALHGISLDFEEK----ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70

Query: 58  VDL--KHLDGTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAK 108
            ++    +D   LR  V G++ Q+P  F  SV +N+ YG       D  + D+++EE+ K
Sbjct: 71  QNIYGSKMDLVELRKEV-GMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLK 129

Query: 109 LA------------NAHGF---------------------ISEFPSGALDNESEKLVQAA 135
            A            NA  F                     + + P+ ALD  S   ++  
Sbjct: 130 QAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET 189

Query: 136 LESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
           L       T +M+ H L      +D    L  G ++E
Sbjct: 190 LMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226

Length = 251

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 51.1 bits (122), Expect = 6e-08
 Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 14/122 (11%)

Query: 9    KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD-GTW 67
            + +L+D +  +  GQ+V ++G +G+GKST+++ L R    + G I I GV    +   TW
Sbjct: 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW 1290

Query: 68   LRGNVIGLINQEPVLFATSVRENI----RYGDSSVSDEQIEEAAKLANAHGFISEFPSGA 123
             +    G+I Q+  +F+ + R+N+    ++     SDE+I + A+       I +FP   
Sbjct: 1291 RKA--FGVIPQKVFIFSGTFRKNLDPYEQW-----SDEEIWKVAEEVGLKSVIEQFP-DK 1342

Query: 124  LD 125
            LD
Sbjct: 1343 LD 1344

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 49.9 bits (120), Expect = 7e-08
 Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 42/203 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT-- 66
           +  L+D +  IP G+ V + G SG GKST++ L+      + G I ++G DL  L G   
Sbjct: 15  REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREI 74

Query: 67  -WLRGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKLAN----AHG 114
            +LR   IG++ Q+  L    +V EN+                ++ E   L      A  
Sbjct: 75  PFLRRQ-IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARA 133

Query: 115 FISEF-------------------------PSGALDNE-SEKLVQAALESACKGRTVLMI 148
             S+                          P+G LD + S ++++   E    G TVLM 
Sbjct: 134 LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMA 193

Query: 149 AHRLSTVQNADL-IVVLQAGQIV 170
            H L  V      ++ L+ G++V
Sbjct: 194 THDLELVNRMRHRVLALEDGRLV 216

Length = 223

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 10/114 (8%)

Query: 15  FNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG 74
           F+L +  G++VAI+G SG GKST++ L+  F   +SG++T++G D  H      R  V  
Sbjct: 18  FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD--HTTTPPSRRPVSM 75

Query: 75  LINQEPVLFA-TSVRENIRYGD------SSVSDEQIEEAAKLANAHGFISEFPS 121
           L  QE  LF+  +V +NI  G       ++   E++   A+       ++  P 
Sbjct: 76  LF-QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG 128

Length = 232

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.2 bits (120), Expect = 8e-08
 Identities = 44/137 (32%), Positives = 64/137 (46%), Gaps = 22/137 (16%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-VSS----GNITISGVDLKHLDGT 66
           LK  ++ IP     A++G SG GKST +  L R  D + +    G++ + G D+ + DG 
Sbjct: 61  LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI-YQDGV 119

Query: 67  ---WLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGA 123
               LR  V G++ Q P  F  S+RENI YG     D      A+L            G 
Sbjct: 120 NLVELRKRV-GMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLL-----------GR 167

Query: 124 LDNESEK-LVQAALESA 139
            D ++E  LV+ +L  A
Sbjct: 168 DDKDAEDELVERSLRQA 184

Length = 305

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 50.2 bits (120), Expect = 9e-08
 Identities = 41/184 (22%), Positives = 74/184 (40%), Gaps = 42/184 (22%)

Query: 27  IVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-T 85
           ++G SG GK+T++ LL  F    SG+I + G D+ ++    LR   I ++ Q   LF   
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNV-PPHLRH--INMVFQSYALFPHM 57

Query: 86  SVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFPS------------------ 121
           +V EN+ +G        +    ++ EA +L     F    P                   
Sbjct: 58  TVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVF 117

Query: 122 -----------GALDNESEKLVQAALESACK--GRTVLMIAHRLS-TVQNADLIVVLQAG 167
                       ALD +    +Q  L++  +  G T + + H     +  +D I +++ G
Sbjct: 118 KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKG 177

Query: 168 QIVE 171
           +I +
Sbjct: 178 KIAQ 181

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 49.5 bits (119), Expect = 9e-08
 Identities = 47/202 (23%), Positives = 85/202 (42%), Gaps = 54/202 (26%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
             +L+D +  +  G+ +AIVG +G GKST++  +      +SG+I + G   K L+    
Sbjct: 12  HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG---KPLEKERK 68

Query: 69  RGNVIGLINQEPVL---FATSVRENI---RYGDS------SVSDEQ-IEEA------AKL 109
           R   IG + Q   +   F  SVR+ +    YG        S +D+  ++EA      ++L
Sbjct: 69  R---IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSEL 125

Query: 110 ANAHGFISEFPSG-------------------------ALDNESEKLVQAALESAC-KGR 143
           A+    I E   G                          +D ++++ +   L     +G 
Sbjct: 126 ADRQ--IGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGM 183

Query: 144 TVLMIAHRLSTVQN-ADLIVVL 164
           T+L++ H L  V    D +++L
Sbjct: 184 TILVVTHDLGLVLEYFDRVLLL 205

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 15/116 (12%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-----GNITISGVDL--K 61
           K  L D  + IP  +  A++G SG GKST++    R  D+       G+I  +G ++   
Sbjct: 19  KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDS 78

Query: 62  HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
             D   LR   IG++ Q P  F  S+ EN+ YG       +    D  +E++ K A
Sbjct: 79  GADVVALRRK-IGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGA 133

Length = 253

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 47/206 (22%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
           +  K  + D +L +  G+   ++G +G GK+T + +L      +SG   I+G  +   D 
Sbjct: 12  KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSI-RTDR 70

Query: 66  TWLRGNVIGLINQEPVLFAT-SVRENIRY-----GDSSVSDEQIEEAA------------ 107
              R + +G   Q   LF   +VRE++R+     G   +   +I+E              
Sbjct: 71  KAARQS-LGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDK 126

Query: 108 --------------KLANAHGFIS--------EFPSGALDNESEKLVQAALESACKGRTV 145
                         KL+ A   I         E  SG LD  S + +   +    KGR++
Sbjct: 127 ANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSG-LDPASRRAIWDLILEVRKGRSI 185

Query: 146 LMIAHRLSTVQN-ADLIVVLQAGQIV 170
           ++  H +   +   D I ++  G++ 
Sbjct: 186 ILTTHSMDEAEALCDRIAIMSDGKLR 211

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 50/206 (24%), Positives = 78/206 (37%), Gaps = 51/206 (24%)

Query: 14  DFNLRIPAGQKVAIVGSSGNGKST----IVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
           D NL +  G+ +A+VG SG+GKS     I+ LL      +SG I + G     L    +R
Sbjct: 4   DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRP---LLPLSIR 60

Query: 70  GNVIGLINQEPV-----LF--ATSVRENIRYGDSSVSDEQ-----------IEEAAKLAN 111
           G  I  I Q P      LF       E +R         +           + +  ++  
Sbjct: 61  GRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLK 120

Query: 112 AHGF-----------------------ISEFPSGALDNESEKLVQAALESACK--GRTVL 146
            + F                       I++ P+  LD  ++  V   L    +  G  +L
Sbjct: 121 KYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGIL 180

Query: 147 MIAHRLSTV-QNADLIVVLQAGQIVE 171
           +I H L  V + AD + V+  G+IVE
Sbjct: 181 LITHDLGVVARIADEVAVMDDGRIVE 206

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 15/113 (13%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--KHLD 64
           LK  ++ I     VA +G SG GKST + L  R  D+       G I I G ++  K + 
Sbjct: 19  LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78

Query: 65  GTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
              LR NV G++ Q P  F  S+ EN+ YG       D++   +++EE  K A
Sbjct: 79  VDELRKNV-GMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGA 130

Length = 250

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDGTW 67
          +L D +L IP+GQ VA++G SG+GK+T   I+A LE     +SG+I   G D+  L    
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ---TSGHIRFHGTDVSRLHA-- 71

Query: 68 LRGNVIGLINQEPVLFA-TSVRENIRYG 94
           R   +G + Q   LF   +V +NI +G
Sbjct: 72 -RDRKVGFVFQHYALFRHMTVFDNIAFG 98

Length = 353

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 6/117 (5%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
            +L++ +  I  GQ+V ++G +G+GKST+++   R  + + G+I I GV    +     R
Sbjct: 18  AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWR 76

Query: 70  GNVIGLINQEPVLFATSVRENIR-YGDSSVSDEQIEEAAKLANAHGFISEFPSGALD 125
               G+I Q+  +F+ + R+N+  YG    SDE+I + A+       I +FP G LD
Sbjct: 77  -KAFGVIPQKVFIFSGTFRKNLDPYGKW--SDEEIWKVAEEVGLKSVIEQFP-GQLD 129

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 49.0 bits (118), Expect = 2e-07
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR- 69
           IL   +L +P G+ VA++G +G GK+T++  +       SG+I   G D+  L     R 
Sbjct: 15  ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP-PHERA 73

Query: 70  --GNVIGLINQEPVLFAT-SVRENIRYGDSSVSDEQIEE 105
             G  IG + +   +F   +V EN+  G  +    + + 
Sbjct: 74  RAG--IGYVPEGRRIFPELTVEENLLLGAYARRRAKRKA 110

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 47/204 (23%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
            L+D +L I +G+ V ++G SG GK+T++ L+  F   S G+I ++G   + ++G    G
Sbjct: 20  ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG---RRIEGP---G 73

Query: 71  NVIGLINQEPVLFA-TSVRENIRYGDSSV---SDEQIEEAAKLAN-------AHGFISEF 119
              G++ Q   L    +V +N+ +G         ++ E A ++          H +I + 
Sbjct: 74  AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQL 133

Query: 120 -------------------------PSGALDNESEKLVQAALESACK--GRTVLMIAHRL 152
                                    P GALD  + + +Q  L    +  G+ VL+I H +
Sbjct: 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI 193

Query: 153 -STVQNADLIVVLQA--GQIVEML 173
              +  A  +VVL    G++VE L
Sbjct: 194 EEALFLATRLVVLSPGPGRVVERL 217

Length = 259

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 14/134 (10%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           + +L++ +L +  G+++ +VG +G GKST++ +L    +  SG +T              
Sbjct: 16  RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRP------------ 63

Query: 69  RGNVIGLINQEPVLFAT-SVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNE 127
           +G  +G ++QEP L    +V + +  G   +  E + E  +         +     L+  
Sbjct: 64  KGLRVGYLSQEPPLDPEKTVLDYVIEGFGEL-RELLAELEEAYALLADPDDELLAELEAL 122

Query: 128 SEKLVQAALESACK 141
            E+L    LE+  +
Sbjct: 123 LEELDGWTLEARAE 136

Length = 530

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
          L D +L IP+G+ VA++G SG+GK+T++ L+       SG I   G D   +    ++  
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP---VQER 74

Query: 72 VIGLINQEPVLFA-TSVRENIRYG 94
           +G + Q   LF   +V +N+ +G
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFG 98

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 8/92 (8%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS------GVDLKH 62
           K ILKD  ++IP      I+G SG+GKST++ +L R  ++    I +       G D+  
Sbjct: 23  KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQ 82

Query: 63  LDGTWLRGNVIGLINQEPVLFA-TSVRENIRY 93
           +D   LR  V G++ Q+P  F   S+ +NI Y
Sbjct: 83  IDAIKLRKEV-GMVFQQPNPFPHLSIYDNIAY 113

Length = 257

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 50/212 (23%), Positives = 86/212 (40%), Gaps = 50/212 (23%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-----GNITISGVDL--K 61
           K IL D NL I   +  A +G SG GKST +    R  D        G + I G+D+   
Sbjct: 18  KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSV 77

Query: 62  HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG--------DSSVSDEQIEE-------- 105
             +   LR  V G++ Q+P  F  S+ +N+ YG        +    DE +E+        
Sbjct: 78  DTNVVLLRAKV-GMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLW 136

Query: 106 ----------AAKLANAHG---------------FISEFPSGALDNESEKLVQAALESAC 140
                     A +L+                    + + P  ALD  +  +++  ++   
Sbjct: 137 EELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK 196

Query: 141 KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
           K  T++++ H +   +  +D +   Q+G+IVE
Sbjct: 197 KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE 228

Length = 251

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL---DGT 66
           +LK  +L I  G+ VAIVGSSG+GKST++ LL    + +SG +  +G  L  L   +  
Sbjct: 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERA 78

Query: 67 WLRGNVIGLINQ 78
           LR   +G I Q
Sbjct: 79 KLRNKKLGFIYQ 90

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 5/87 (5%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG--VDLKHLDGTWLR 69
           LK  N+ I  G+  AI+G +G GKST+   L      SSG I   G  +D        LR
Sbjct: 22  LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81

Query: 70  GNVIGLINQEP--VLFATSVRENIRYG 94
            +V G++ Q+P   LF+ SV +++ +G
Sbjct: 82  ESV-GMVFQDPDNQLFSASVYQDVSFG 107

Length = 283

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 49/209 (23%), Positives = 80/209 (38%), Gaps = 52/209 (24%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL--DGTWLR 69
           L D +  +  G+   ++G +G GK+T+  L+  F   +SG++   G D+  L        
Sbjct: 16  LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75

Query: 70  GNVIGLINQEPVLFAT-SVRENIR----------YGDSSVSDEQIEEAAK---------L 109
           G  IG   Q P LF   +V EN+              +    E+ E   +         L
Sbjct: 76  G--IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133

Query: 110 AN-AHGFISEFPSGA------------------LDN--------ESEKLVQAALESACKG 142
           A+ A     E   G                   LD         E+E+L +   E   +G
Sbjct: 134 ADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERG 193

Query: 143 RTVLMIAHRLSTVQN-ADLIVVLQAGQIV 170
            TVL++ H +  V + AD + VL  G+++
Sbjct: 194 ITVLLVEHDMDVVMSLADRVTVLDQGRVI 222

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 55/208 (26%), Positives = 88/208 (42%), Gaps = 57/208 (27%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
             D +L +  G+  A++G +G GKST++ +L   Y   SG I         +DG  +R  
Sbjct: 20  NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI--------RVDGKEVRIK 71

Query: 72  V--------IGLINQEPVLFAT-SVRENI--------------------------RYG-- 94
                    IG+++Q  +L  T +V ENI                          RYG  
Sbjct: 72  SPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLP 131

Query: 95  --------DSSVSDEQIEEAAK--LANAHGFISEFPSGAL-DNESEKLVQAALESACKGR 143
                   D SV ++Q  E  K     A   I + P+  L   E+++L +     A +G+
Sbjct: 132 VDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGK 191

Query: 144 TVLMIAHRLSTVQN-ADLIVVLQAGQIV 170
           T++ I H+L  V   AD + VL+ G++V
Sbjct: 192 TIIFITHKLKEVMAIADRVTVLRRGKVV 219

Length = 501

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 15/113 (13%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--KHLD 64
           +K  +++    +  A++G SG+GKST +  L R  D       +G I   G+D+  K ++
Sbjct: 36  IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95

Query: 65  GTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
              +R + IG++ Q P  FA S+ ENI +        D  V DE +E + K A
Sbjct: 96  VYEMRKH-IGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQA 147

Length = 267

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 48/188 (25%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--KHLD 64
           LK+ NL I   +  AI+G SG GKST +  L R  ++     ++G I     ++  K   
Sbjct: 40  LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99

Query: 65  GTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA------- 110
              LR NV G++ Q+P  F  S+ +N+ YG       D    DE +E++ + A       
Sbjct: 100 VEELRTNV-GMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK 158

Query: 111 -----NAHGF---------------------ISEFPSGALDNESEKLVQAALESACKGRT 144
                NA+G                      + + P+ ALD  S   V+  ++   K  +
Sbjct: 159 DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYS 218

Query: 145 VLMIAHRL 152
           ++++ H +
Sbjct: 219 IIIVTHNM 226

Length = 271

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.5 bits (115), Expect = 3e-07
 Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK-------HL 63
           +LK+ N+  P  Q  AI+G SG GKST++  L R  D+ SG      V L        +L
Sbjct: 19  VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78

Query: 64  DGTWLRGNVIGLINQEPVLFATSVRENIRYG 94
           D   LR  V G++ Q+P  F  S+ +N+ +G
Sbjct: 79  DVVNLRKRV-GMVFQQPNPFPKSIFDNVAFG 108

Length = 251

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL--ERFYDVSSGNITISGVDLKHLDGT 66
          K IL+  NL +  G+  AI+G +G+GKST+ A L     Y+V+ G +   G DL  L   
Sbjct: 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE 73

Query: 67 WLRGNVIGLINQEPV 81
             G  I +  Q PV
Sbjct: 74 DRAGEGIFMAFQYPV 88

Length = 248

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 55/215 (25%)

Query: 3   GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62
           G+LR  K +L D NL I  G+ V + G SG+GK+T++ L+     V  G++ + G +L  
Sbjct: 14  GSLR--KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYG 71

Query: 63  LDG---TWLRGNVIGLINQEPVLF-ATSVRENIRYG----DSSVSDEQIEEAAKLANAHG 114
                   LR N IG I Q   L    + R+N++       +    E  E A  +  A G
Sbjct: 72  ASEKELVQLRRN-IGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVG 130

Query: 115 F--------------------------------ISEFPSGALDNESEKLV-----QAALE 137
                                            +++ P+ ALD++S + V     + A E
Sbjct: 131 LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190

Query: 138 SACKGRTVLMIAH--RLSTVQNADLIVVLQAGQIV 170
             C   T+L++ H  R+  V  AD IV ++ G+++
Sbjct: 191 QGC---TILIVTHDNRILDV--ADRIVHMEDGKLL 220

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 48.8 bits (116), Expect = 3e-07
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 12/122 (9%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY--DVSSGNITISGVDLKHLDGT 66
            T+L D +L I AG+ +A++G SG GK+T++  +  F      +G I I+  DL H    
Sbjct: 18  NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP-P 76

Query: 67  WLRGNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEF 119
             RG  + L+ Q   LF    V +N+ +G        +   E++ +A KL       +  
Sbjct: 77  HKRG--LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHL 134

Query: 120 PS 121
           P+
Sbjct: 135 PA 136

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 40/199 (20%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           LKD +  +  G+ VAIVG +G+GKST+  LL       +G IT+ G+ L   +  W    
Sbjct: 23  LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSE-ETVWDVRR 81

Query: 72  VIGLINQEP--VLFATSVRENIRYG--DSSVSDEQ----IEEAAKLANAHGFISEFP--- 120
            +G++ Q P       +V++++ +G  +  V  E+    +++A +      F++  P   
Sbjct: 82  QVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRL 141

Query: 121 SGA-------------------LDNESEKL----VQAALES-----ACKGRTVLMIAHRL 152
           SG                    LD  +  L     +  LE+       KG TVL I H L
Sbjct: 142 SGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL 201

Query: 153 STVQNADLIVVLQAGQIVE 171
                AD ++V+  G+I+E
Sbjct: 202 DEAAQADRVIVMNKGEILE 220

Length = 279

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 11/89 (12%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTI---VALLERFYDVSSGNITISGVDLKHLDGT 66
             L + +L +PAGQ   ++G+SG GKST+   V LLER    +SG++ + G DL  L  +
Sbjct: 19  QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNS 75

Query: 67  WL---RGNVIGLINQE-PVLFATSVRENI 91
            L   R   IG+I Q   +L + +V  N+
Sbjct: 76  ELTKARRQ-IGMIFQHFNLLSSRTVFGNV 103

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 15/87 (17%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGK-STIVALLERFYDVSSGNITISGVDLKHLDGTW 67
           +  L + NL +P G  VAIVGS+G GK S I A+L      S  ++ I            
Sbjct: 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------------ 677

Query: 68  LRGNVIGLINQEPVLFATSVRENIRYG 94
            RG V   + Q   +F  +VR+NI +G
Sbjct: 678 -RGTV-AYVPQVSWIFNATVRDNILFG 702

Length = 1622

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 45/202 (22%), Positives = 86/202 (42%), Gaps = 54/202 (26%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K +L+D ++ +P G+   ++G++G+GKST++  L   +++S G +             W 
Sbjct: 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-------------WA 719

Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDS--------SVSDEQIE-EAAKL---------- 109
             + I  + Q+  +   +VR NI + D         +V   Q+E + A+L          
Sbjct: 720 ERS-IAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGE 778

Query: 110 --------------------ANAHGFISEFPSGALDNE-SEKLVQAALESACKGRTVLMI 148
                               AN   ++ + P  ALD    E++V+     A  G+T ++ 
Sbjct: 779 KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLA 838

Query: 149 AHRLSTVQNADLIVVLQAGQIV 170
            H++  V  AD +V L  G++ 
Sbjct: 839 THQVHVVPRADYVVALGDGRVE 860

Length = 1560

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 11/117 (9%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K IL D + ++  G+  AIVG +G GK+T+++LL   +  SSG++T+ G      +  + 
Sbjct: 44  KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFE 103

Query: 69  RGNVIGLIN---QEPVLFATSVRENIRYG--DSS------VSDEQIEEAAKLANAHG 114
               IGL++    E      +VR+ +  G   S       ++ E +  A  L    G
Sbjct: 104 LRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLG 160

Length = 257

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.1 bits (114), Expect = 5e-07
 Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 43/207 (20%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG- 70
           L++ NL I  G+ + I+G +G+GKST+   L        G + +SG+D    D + L+G 
Sbjct: 18  LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTG--DFSKLQGI 75

Query: 71  -NVIGLINQEP--VLFATSVRENIRYG---------------DSSVSDEQIEE-----AA 107
             ++G++ Q P       +V E++ +G               D ++++  +E+       
Sbjct: 76  RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPK 135

Query: 108 KLANAHG---------------FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHR 151
            L+   G                I +  +  LD +S   V   ++    KG+T++ I H 
Sbjct: 136 TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHN 195

Query: 152 LSTVQNADLIVVLQAGQIVEMLGQHEN 178
           L  + +AD I+V+  G+IV + G+ EN
Sbjct: 196 LEELHDADRIIVMDRGKIV-LEGEPEN 221

Length = 274

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 47/205 (22%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---- 67
           L + +  +  G  VA+VG +G+GKST++         SSG ITI+G  +    G      
Sbjct: 23  LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82

Query: 68  LRGNVIGLINQ--EPVLFATSVRENIRYG--DSSVSDEQIEEAAK-----------LANA 112
           LR  V  L+ Q  E  LF  +V +++ +G  +   S+++ +E A            L + 
Sbjct: 83  LRKKV-SLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISK 141

Query: 113 HGF------------------------ISEFPSGALDNESEK-LVQAALESACKGRTVLM 147
             F                        + E P+  LD E  K ++Q   +    G TV++
Sbjct: 142 SPFELSGGQMRRVAIAGVMAYEPEILCLDE-PAAGLDPEGRKEMMQLFKDYQKAGHTVIL 200

Query: 148 IAHRLSTV-QNADLIVVLQAGQIVE 171
           + H +  V + AD ++VL+ G++++
Sbjct: 201 VTHNMDDVAEYADDVLVLEHGKLIK 225

Length = 287

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 45/203 (22%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL----KHLDGTW 67
           L D NL I  G   A +G +G+GKSTI+ LL   +  + G++ +    +    K+ D   
Sbjct: 23  LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82

Query: 68  LRGNVIGLINQ--EPVLFATSVRENIRYGDSS--VSDEQIEEAAKLANAHGFISE----- 118
           +R  V GL+ Q  E  LF  +V +++ +G  +  VS E+ E  A+   A   ISE     
Sbjct: 83  IRKKV-GLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEK 141

Query: 119 --FP-----------SGALDNESEKLV----QAALESACK-------------GRTVLMI 148
             F            +G L  E + LV     A L+   +             G T++++
Sbjct: 142 NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLV 201

Query: 149 AHRLSTVQN-ADLIVVLQAGQIV 170
            H +  V N AD + VL+ G++V
Sbjct: 202 THLMDDVANYADFVYVLEKGKLV 224

Length = 280

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 48.0 bits (114), Expect = 7e-07
 Identities = 47/200 (23%), Positives = 83/200 (41%), Gaps = 38/200 (19%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
           R L   L      IP G  VA+VG  G GKS++++ L    D   G++ + G        
Sbjct: 648 RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ 707

Query: 66  TWLRGNVIGLINQEPVLFATSVRENIRY------------------GDSS--------VS 99
            W++ + +    +E +LF  ++ E   Y                  GD +        +S
Sbjct: 708 AWIQNDSL----RENILFGKALNEK-YYQQVLEACALLPDLEILPSGDRTEIGEKGVNLS 762

Query: 100 DEQIEEA----AKLANAHGFISEFPSGALDNESEKLVQAAL---ESACKGRTVLMIAHRL 152
             Q +      A  +NA  ++ + P  A+D    K +   +   E   K +T +++ H +
Sbjct: 763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGI 822

Query: 153 STVQNADLIVVLQAGQIVEM 172
           S +   D+I+V+  G+I EM
Sbjct: 823 SYLPQVDVIIVMSGGKISEM 842

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 47.8 bits (114), Expect = 7e-07
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 10/113 (8%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
           T++ + NL I  G  V ++G SG GK+T++ L+      + G I I G D+ H     ++
Sbjct: 20  TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH---RSIQ 76

Query: 70  GNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGF 115
              I ++ Q   LF   S+ EN+ YG            ++++EA +L +  GF
Sbjct: 77  QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF 129

Length = 351

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 50/209 (23%), Positives = 82/209 (39%), Gaps = 49/209 (23%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           + +L   +L +  G+ +AI+G +G GKST++  L       SG +T++GV L        
Sbjct: 14  RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPP-EE 72

Query: 69  RGNVIGLINQEPVL-FATSVRENIRYG-------DSSVSDEQIEEAA------------- 107
                 ++ Q   L F  +V+E ++ G            DE+I   A             
Sbjct: 73  LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD 132

Query: 108 ----------------KLANAHG--------FISEFPSGALD-NESEKLVQAALESACKG 142
                            LA            F+ E P+ ALD       ++ A + A +G
Sbjct: 133 YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDE-PTSALDIAHQHHTLRLARQLAREG 191

Query: 143 RTVLMIAHRLS-TVQNADLIVVLQAGQIV 170
             VL + H L+   Q AD IV+L  G+++
Sbjct: 192 GAVLAVLHDLNLAAQYADRIVLLHQGRVI 220

Length = 259

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.8 bits (113), Expect = 7e-07
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 5   LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVD 59
           + R K +L D NL I   +  A +G SG GKST +  L +  D+       G I   G +
Sbjct: 91  MNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTN 150

Query: 60  L--KHLDGTWLRGNVIGLINQEPVLFATSVRENIRYG--DSSVSDEQIEE 105
              K +    LR   IG++ Q+P  F  S+ +N+ YG  ++ ++D +I E
Sbjct: 151 TRSKKISSLELRTR-IGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILE 199

Length = 329

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
          T+L   N  + AG+KVA++G SG+GKSTI+ +L     +  G I + G  L H+ G
Sbjct: 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPG 69

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 15/117 (12%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDL--K 61
           K  L   +L     +  A++G SG+GKST++  + R  D++     +G+I  +G ++   
Sbjct: 18  KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSP 77

Query: 62  HLDGTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLAN 111
             D   LR   IG++ Q+P  F  S+ EN+ YG       D  V DE +E++ K A+
Sbjct: 78  RTDTVDLRKE-IGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGAS 133

Length = 252

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 44/200 (22%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL-- 68
            L D +L I  G+ + + G SG GK+T++ LL      S G + I+G D+  L G  L  
Sbjct: 17  ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPL 76

Query: 69  --RGNVIGLINQE-PVLFATSVRENI------RYGDSSVSDEQIEEAAK---LANAHGFI 116
             R   IG++ Q+  +L   +V EN+      R         ++  A +   L +     
Sbjct: 77  LRRR--IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF 134

Query: 117 SEF--------------------------PSGALDNESEKLVQAALESACK-GRTVLMIA 149
            E                           P+G LD +  + +   L+   K G TV++  
Sbjct: 135 PEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVAT 194

Query: 150 HRLSTVQN-ADLIVVLQAGQ 168
           H LS V   A  +++L  G+
Sbjct: 195 HDLSLVDRVAHRVIILDDGR 214

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 46.4 bits (111), Expect = 9e-07
 Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 29/153 (18%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           + +LKD +  I  G ++ I G SG GKS++   L   +   SG I +             
Sbjct: 14  RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM------------P 61

Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDSSV--SDEQIEEAAKLANAH--------GFISE 118
            G  +  + Q P L   ++RE + Y    V    EQ     +LA A          F+ E
Sbjct: 62  EGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQ----QRLAFARLLLHKPKFVFLDE 117

Query: 119 FPSGALDNESEKLVQAALESACKGRTVLMIAHR 151
             + ALD ESE  +   L+    G TV+ + HR
Sbjct: 118 -ATSALDEESEDRLYQLLKEL--GITVISVGHR 147

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL--ERFYDVSSGNITISGVDL 60
          K ILK  NL +  G+  AI+G +G+GKST+   +     Y+V+SG I   G DL
Sbjct: 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDL 66

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 16/113 (14%)

Query: 14  DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDL--KHLDGT 66
           D NL I      A +G SG GKST++  L R ++V       G + + G DL    +D  
Sbjct: 22  DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81

Query: 67  WLRGNVIGLINQEPVLFAT-SVRENIRYG-------DSSVSDEQIEEAAKLAN 111
            +R   IG++ Q P  F T S+R+N+  G       +    DE +E++ + AN
Sbjct: 82  AVR-RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGAN 133

Length = 258

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 13/107 (12%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI------SGVDLKHLDG 65
           L D N+ IP+G  VAI+G +G+GKST++  L      +SG +TI      +G   K L  
Sbjct: 23  LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82

Query: 66  TWLRGNVIGLINQ--EPVLFATSVRENIRYGDSS--VSDEQIEEAAK 108
             LR  V G++ Q  E  LF  +V ++I +G  +  VS+E  ++ A+
Sbjct: 83  --LRKKV-GIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAR 126

Length = 290

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 53/204 (25%), Positives = 83/204 (40%), Gaps = 42/204 (20%)

Query: 7   RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL----KH 62
           RL     D +  +P     AI G SG+GK+T++ L+        G I ++G  L    K 
Sbjct: 8   RLGDFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKG 67

Query: 63  LDGTWLRGNVIGLINQEPVLFA-TSVRENIRYG--DSSVSDEQIEEA------------- 106
           +     +   IG + QE  LF   SVR N+RYG   +  S+ +I                
Sbjct: 68  IFLPPEK-RRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG 126

Query: 107 ------------------AKLANAHGFISEFPSGALDNESEKLVQAALE--SACKGRTVL 146
                             A L++    + + P  ALD+  +  +   LE   A  G  +L
Sbjct: 127 RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPIL 186

Query: 147 MIAHRLSTVQN-ADLIVVLQAGQI 169
            ++H L  V   AD +VVL+ G++
Sbjct: 187 YVSHSLQEVLRLADRVVVLEDGRV 210

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 44/204 (21%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH-LDGTWLRG 70
           + D N     G+  AIVG +G+GKST++  +      ++G +T+  + + H     ++R 
Sbjct: 23  IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82

Query: 71  --NVIGLINQ--EPVLFATSVRENIRYGDSSVS---DEQIEEAAKLANAHGF-------- 115
               IG++ Q  E  LF  +V   I +G  +     DE    A +L    GF        
Sbjct: 83  VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQS 142

Query: 116 -------------------------ISEFPSGALDNESEKLVQAALES--ACKGRTVLMI 148
                                    + + P+  LD +S++ V   L+S    + +T++++
Sbjct: 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILV 202

Query: 149 AHRLSTV-QNADLIVVLQAGQIVE 171
           +H ++ V + AD ++V++ G IV 
Sbjct: 203 SHDMNEVARYADEVIVMKEGSIVS 226

Length = 286

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 42/203 (20%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG- 70
           +KD +L I  G+   I+G SG+GKST+V LL R  + + G + I GVD+  +    LR  
Sbjct: 44  VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103

Query: 71  --NVIGLINQEPVLFA-TSVRENIRYGD--SSVSDEQIEEAA-------KLAN-AHGFIS 117
               I ++ Q   L    +V +N  +G   + ++ E+  E A        L N AH +  
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD 163

Query: 118 EFPSG-------------------------ALDNESEKLVQAALE--SACKGRTVLMIAH 150
           E   G                         ALD      +Q  L    A   RT++ I+H
Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223

Query: 151 RL-STVQNADLIVVLQAGQIVEM 172
            L   ++  D I ++Q G++V++
Sbjct: 224 DLDEAMRIGDRIAIMQNGEVVQV 246

Length = 400

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 46/199 (23%), Positives = 77/199 (38%), Gaps = 40/199 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K  L   +L +  G    ++G +G GK+T++ +L      SSG I I G D+       L
Sbjct: 13  KRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK-QPQKL 70

Query: 69  RGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKLAN----AHGFIS 117
           R   IG + QE  ++   +VRE + Y        S     +++E  +L N    A   I 
Sbjct: 71  RR-RIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIG 129

Query: 118 EF-------------------------PSGALDNESEKLVQAALESACKGRTVLMIAHRL 152
                                      P+  LD E     +  L    + R V++  H +
Sbjct: 130 SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIV 189

Query: 153 STVQN-ADLIVVLQAGQIV 170
             V++  + + VL  G++V
Sbjct: 190 EDVESLCNQVAVLNKGKLV 208

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 4/82 (4%)

Query: 14  DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVI 73
           D +L I  G+  A++G+SG GKST++ +L  F   ++G I + GVDL H+   + R   I
Sbjct: 37  DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-PYQRP--I 93

Query: 74  GLINQEPVLFA-TSVRENIRYG 94
            ++ Q   LF   +V +NI +G
Sbjct: 94  NMMFQSYALFPHMTVEQNIAFG 115

Length = 377

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK--HLDGTW 67
            +L + +L I  G+ V I+G SG+GKST++  + +  +++SG++ + G+ +    +D   
Sbjct: 15  QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74

Query: 68  LRGNVIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLANA 112
           +R    G++ Q+  LF   +  EN+ +G   V     EEA K A  
Sbjct: 75  IRQEA-GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARE 119

Length = 240

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 33/179 (18%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS--SGNITISGVDLKHLDGT 66
           + +L + +  +  G   A++G SG GK+T++ +L         +G I I+G   + LD  
Sbjct: 20  RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILING---RPLDKN 76

Query: 67  WLRGNVIGLINQEPVLFATS-VRENIRYGDSSV----SDEQ-------IEEAAK---LAN 111
           + R    G + Q+ V      VRE +R+  S++    S EQ       +E AAK   L  
Sbjct: 77  FQR--STGYVEQQDVHSPNLTVREALRF--SALLRGLSVEQRKRLTIGVELAAKPSIL-- 130

Query: 112 AHGFISEFPSGALDNES-EKLVQAALESACKGRTVLMIAHRLSTV--QNADLIVVLQAG 167
              F+ E P+  LD+++   +V+   + A  G+ +L   H+ S    +  D +++L+ G
Sbjct: 131 ---FLDE-PTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 43/218 (19%), Positives = 86/218 (39%), Gaps = 59/218 (27%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVA-----LLERFYDVSSGNI----------- 53
             L + +      +   I+G+SG+GKST+V      +  ++  +  G+I           
Sbjct: 40  VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99

Query: 54  TISGVDLKHLDGTWLRGNVIGLINQEP--VLFATSVRENIRYGDSSVSDEQIEEAAKLAN 111
             +    K  +   LR   + ++ Q P   LF  ++ ++I +G  ++  ++  EA KLA 
Sbjct: 100 ITNPYSKKIKNFKELR-RRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKK-SEAKKLAK 157

Query: 112 AH----GFISEF---------------------------------PSGALDNESEK-LVQ 133
            +    G    +                                 P+  LD + E  ++Q
Sbjct: 158 FYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ 217

Query: 134 AALESACKGRTVLMIAHRLSTV-QNADLIVVLQAGQIV 170
             L++    +TV +I H +  V + AD ++V+  G+I+
Sbjct: 218 LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255

Length = 320

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 47/213 (22%), Positives = 71/213 (33%), Gaps = 55/213 (25%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
             +L + +L I  G+ V ++G SG GKST+  LL      + G ++  G DL  LD    
Sbjct: 24  APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQR 83

Query: 69  RG----------NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISE 118
           R           +    +N    +    + E +R+  S    EQ    A+L +  G    
Sbjct: 84  RAFRRDVQLVFQDSPSAVNPRMTVRQ-IIGEPLRHLTSLDESEQKARIAELLDMVG---- 138

Query: 119 FPSGALDNESEKLVQAALESACKGRTV--------------------------------- 145
             S   D    +L    L+     R +                                 
Sbjct: 139 LRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQ 198

Query: 146 ------LMIAHRLSTVQN-ADLIVVLQAGQIVE 171
                 L I H L  VQ+    + V+  GQIVE
Sbjct: 199 AFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           +T+L   +L  PAG+   ++G +G+GKST++ +L R    S G I +    L+       
Sbjct: 24  RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83

Query: 69  RGNVIGLINQEPVLFATSVRENI---RY------GDSSVSD-EQIEEAAKL 109
              V  L  Q P     +VRE +   RY      G    +D E++EEA  L
Sbjct: 84  ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISL 134

Length = 265

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL--DGTW 67
             L+  +L +  G+ VA++G +G GK+T++  +       SG I   G D+  L      
Sbjct: 17  QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76

Query: 68  LRGNVIGLINQEPVLFAT-SVRENIRYGDSSVSDEQIEEA 106
             G  I  + +   +F   +V EN+  G  +  D++ +E 
Sbjct: 77  RLG--IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER 114

Length = 237

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI 55
           + +LKD + RI  G ++AIVG +G GKST++ LL       SG + +
Sbjct: 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV 381

Length = 530

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 16/109 (14%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTI---VALLERFYDVSSGNITISGVDLKHLDGTW 67
           ++K  +L +  G+ + +VG SG GKST+   VA LER   ++SG I I G  +  L+   
Sbjct: 19  VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEPA- 74

Query: 68  LRGNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKL 109
            R   I ++ Q   L+   SVREN+ YG        +  +E++ EAA++
Sbjct: 75  DRD--IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARI 121

Length = 356

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 1/110 (0%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
           R  + +    +  + AG+ + + G +G+GK+T++ +L       +G + ++G  L     
Sbjct: 10  RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRD 69

Query: 66  TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGF 115
           +  R  ++ L +   +    SV EN+R+  +  SDEQ+EEA      +GF
Sbjct: 70  SIAR-GLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF 118

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 55/209 (26%)

Query: 4   NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIV-ALLERFYDVSSGNITISGVDLKH 62
           + +  K  L D NL IP G  VAIVG +G GK++++ A+L       + ++ I G     
Sbjct: 625 DSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRG----- 679

Query: 63  LDGTWLRGNVIGLINQEPVLFATSVRENIRYGD--------------------------- 95
                     +  + Q   +F  +VRENI +G                            
Sbjct: 680 ---------SVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRD 730

Query: 96  -----------SSVSDEQIEEA-AKLANAHGFISEFPSGALDNE-SEKLVQAALESACKG 142
                      S    +++  A A  +N+  +I + P  ALD   + ++  + ++   KG
Sbjct: 731 LTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKG 790

Query: 143 RTVLMIAHRLSTVQNADLIVVLQAGQIVE 171
           +T +++ ++L  +   D I+++  G I E
Sbjct: 791 KTRVLVTNQLHFLPLMDRIILVSEGMIKE 819

Length = 1495

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
          IL + +L + AG+ +AI G SG GKST++ ++      +SG +   G D+  L     R 
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77

Query: 71 NVIGLINQEPVLFATSVRENI 91
           V     Q P LF  +V +N+
Sbjct: 78 QV-SYCAQTPALFGDTVEDNL 97

Length = 223

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 43.2 bits (103), Expect = 8e-06
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNIT-ISGVDLKHLD 64
          K +LKD +L I  G ++ +VG +G GKST++ L+    +   G +T  S V + + +
Sbjct: 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFE 69

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 44.0 bits (104), Expect = 8e-06
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 11/115 (9%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH--LDGTWL 68
           +LK  N     G+ +A++G++G GKST++  L       SG + I G  L +        
Sbjct: 7   VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER 66

Query: 69  RGNVIGLINQEP--VLFATSVRENIRYG--DSSVSDEQIE----EAAKLANAHGF 115
           R  V GL+ Q+P   LFA  V +++ +G  +  +S+ ++E    EA     A G 
Sbjct: 67  RQRV-GLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGL 120

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.5 bits (105), Expect = 8e-06
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 8/90 (8%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDL--KHLD 64
           +K  N  I +    AI+G SG GKST +  + R  D+     ++G +   G D+  K  D
Sbjct: 55  VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114

Query: 65  GTWLRGNVIGLINQEPVLFATSVRENIRYG 94
              LR   IG++ Q+P  F  S+ +NI YG
Sbjct: 115 EVLLRKK-IGMVFQKPNPFPKSIFDNIAYG 143

Length = 286

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 7/105 (6%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL--R 69
           LK  N +   G+ VA++G +G GKST+          +SG + I G  +K+   + L  R
Sbjct: 18  LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR 77

Query: 70  GNVIGLINQEP--VLFATSVRENIRYG--DSSVSDEQIEEAAKLA 110
             V G++ Q P   LFA +V E++ +G  +  +S E++E+  K A
Sbjct: 78  KTV-GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEA 121

Length = 275

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 49/209 (23%), Positives = 77/209 (36%), Gaps = 57/209 (27%)

Query: 12  LKDFNLRIP---AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           L DF L+I      +   I G+SG GKST++  +        G I ++G           
Sbjct: 10  LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT-------VLF 62

Query: 69  RGNV----------IGLINQEPVLFA-TSVRENIRYG--------DSSVSDEQIE----- 104
                         IGL+ Q+  LF   +VREN+ +G        D    DE ++     
Sbjct: 63  DSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLD 122

Query: 105 -------------EAAKLANAHGFISE-------FPSGALDNESEKLVQAALESACK--G 142
                        E  ++A A    ++        P  ALD      +   L+   K   
Sbjct: 123 HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN 182

Query: 143 RTVLMIAHRLSTVQN-ADLIVVLQAGQIV 170
             V+ + H LS  +  AD IVV++ G++ 
Sbjct: 183 IPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
          ++D +     G+   ++G +G GK+T++ ++       SG +TI GVD         R  
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRK- 76

Query: 72 VIGLINQEPVLFA-TSVRENIRY 93
           IG++  E  L+A  + REN++Y
Sbjct: 77 -IGVLFGERGLYARLTARENLKY 98

Length = 245

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 8/81 (9%)

Query: 8   LKTILKDFNLRIPAGQKVAIVGSSGNGKS----TIVALLERFYDV-SSGNITISGVDLKH 62
           ++T++ D +L+I AG+ +A+VG SG+GKS    +I+ LL     V  SG+I   G  L H
Sbjct: 21  VRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80

Query: 63  LDGTWL---RGNVIGLINQEP 80
                L   RGN I +I QEP
Sbjct: 81  ASEQTLRGVRGNKIAMIFQEP 101

Length = 529

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 17/117 (14%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKST----IVALLERFYDVSSGNITISGVDLKHLD 64
           + ++ D +L + +G+ V ++G +G GK+T    IV L+       SG I +   D+  L 
Sbjct: 17  RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR----PDSGKILLDDEDITKLP 72

Query: 65  GTWLRGNV-IGLINQEPVLF-ATSVRENI------RYGDSSVSDEQIEEAAKLANAH 113
               R  + IG + QE  +F   +V +NI      R  D   ++ + E  A L   H
Sbjct: 73  -MHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFH 128

Length = 243

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
           IL+  +L +P G+   ++G +G GK+T++  L     V SG+I + G D+  L      
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA 73

Query: 70 GNVIGLINQEPVLFAT-SVRENIRYG 94
             I  + Q   +F   +V EN+  G
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLTG 99

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--- 67
          +L + +  I  G+ +AIVGSSG+GKST++ LL      +SG++  +G  +  L       
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83

Query: 68 LRGNVIGLINQ 78
          LR   +G I Q
Sbjct: 84 LRNQKLGFIYQ 94

Length = 233

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 15/114 (13%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           LK+ N+ +   Q  A++G SG GKST +    R +D+  GN     + L   +   L   
Sbjct: 32  LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91

Query: 72  V--------IGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
           V        I ++ Q+P  F  S+ EN+ YG         S+ +E++E A + A
Sbjct: 92  VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNA 145

Length = 265

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           LK+ +L +  G    I+G +G+GKS ++  +  F    SG I ++G D+ +L     R  
Sbjct: 15  LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE-KRD- 72

Query: 72  VIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEF 119
            I  + Q   LF   +V +NI YG      ++ E   K+      I+E 
Sbjct: 73  -ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLE----IAEM 116

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDGT 66
           T LKD +L +  G+ V ++G SG GK+T   I+A LER    ++G I   G D+  L   
Sbjct: 18  TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ 74

Query: 67  WLRGNVIGLINQEPVLFAT-SVRENIRYG 94
             R    G++ Q   LF   +V +NI YG
Sbjct: 75  -KRD--YGIVFQSYALFPNLTVADNIAYG 100

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 13/111 (11%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG-------NITISGVDLKHLD 64
           L D +L+IPA + +A +G SG GKST++    R  D+  G             +    ++
Sbjct: 36  LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95

Query: 65  GTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVS-----DEQIEEAAKLA 110
              LR  V G++ Q P  F  S+ ENI +   +       DE +E++ + A
Sbjct: 96  SVKLRRQV-GMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRA 145

Length = 274

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 43/200 (21%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
            T L D +  +  G+   ++G +G GK+T + ++       SG +   G  L        
Sbjct: 13  VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA---- 68

Query: 69  RGNVIGLINQEPVLF-ATSVRENIRY-----------------------GDSSVSDEQIE 104
             N IG + +E  L+    V + + Y                         S  +++++E
Sbjct: 69  -RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVE 127

Query: 105 E------------AAKLANAHGFISEFPSGALDNESEKLV-QAALESACKGRTVLMIAHR 151
           E            AA + +    I + P   LD  + +L+     E A  G+TV++  H+
Sbjct: 128 ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187

Query: 152 LSTVQN-ADLIVVLQAGQIV 170
           +  V+   D +++L  G+ V
Sbjct: 188 MELVEELCDRVLLLNKGRAV 207

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 21/57 (36%), Positives = 34/57 (59%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
          +T+L + +L + +G+ VA++G SG GKST+  LL      S GN++  G  L  L+ 
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81

Length = 268

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---T 66
           +IL    L +  G+ +A++G SG+GKST++A+L    D SSG +++ G  L  +D     
Sbjct: 24  SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83

Query: 67  WLRGNVIGLINQEPVLFAT-SVRENIR 92
            LR   +G + Q  +L  T +  EN+ 
Sbjct: 84  KLRAKHVGFVFQSFMLIPTLNALENVE 110

Length = 228

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
          K  L D +  +  G+ ++I+G +G+GKST V L++   +  SG I I G DL   +  W 
Sbjct: 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDG-DLLTEENVWD 78

Query: 69 RGNVIGLINQEP 80
            + IG++ Q P
Sbjct: 79 IRHKIGMVFQNP 90

Length = 279

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 18/115 (15%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
           R   T L+D +  +P G   A+VG +G+GKST+   L  F  ++SG I+I G   +    
Sbjct: 17  RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA-- 74

Query: 66  TWLRGNVIGLINQE-------PVLFATSVRENIRYGD------SSVSDEQIEEAA 107
             L+ N++  + Q        PVL    V    RYG       +   D QI  AA
Sbjct: 75  --LQKNLVAYVPQSEEVDWSFPVLVEDVVMMG-RYGHMGWLRRAKKRDRQIVTAA 126

Length = 272

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 42.1 bits (100), Expect = 4e-05
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL--DGT 66
          + ++   +L +  G+ V ++G +G GK+T   ++       SG I + G D+  L     
Sbjct: 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR 72

Query: 67 WLRGNVIGLINQEPVLFAT-SVRENIR 92
             G  IG + QE  +F   +V ENI 
Sbjct: 73 ARLG--IGYLPQEASIFRKLTVEENIL 97

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 16/112 (14%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDL--KHLD 64
           +KD ++  P     AI+G SG GKST++  + R +D+      +G I +   D+  + +D
Sbjct: 20  VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79

Query: 65  GTWLRGNVIGLINQEPVLF-ATSVRENIRYG-------DSSVSDEQIEEAAK 108
              +R  V G++ Q+P  F A S+ +N+  G       + S +DE +E + K
Sbjct: 80  PVSIRRRV-GMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLK 130

Length = 252

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 14/108 (12%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
           R ++ +L +    I  GQKV +VG +G GKST++ALL+       G+ T          G
Sbjct: 11  RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYT--------FPG 62

Query: 66  TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAH 113
            W     +  +NQE         E +  GD      Q+E     AN  
Sbjct: 63  NW----QLAWVNQETPALPQPALEYVIDGDREY--RQLEAQLHDANER 104

Length = 638

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           LK+ NL IP  +  AI+G SG GKST +  L     +   N+ ++G ++ +     L+G 
Sbjct: 28  LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVP-NVKLTG-EMNYNGSNILKGK 85

Query: 72  V--------IGLINQEPVLFATSVRENIRYG 94
           V        IG++ Q+   F  S+ +N+ YG
Sbjct: 86  VDLVELRKNIGMVFQKGNPFPQSIFDNVAYG 116

Length = 259

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 41.8 bits (99), Expect = 9e-05
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 17/89 (19%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG-TW 67
          K ILKD +L    G K+ ++G +G GKST++ +             ++GVD K  +G   
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRI-------------MAGVD-KEFNGEAR 63

Query: 68 LRGNV-IGLINQEPVLFAT-SVRENIRYG 94
              + +G + QEP L  T +VREN+  G
Sbjct: 64 PAPGIKVGYLPQEPQLDPTKTVRENVEEG 92

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
             IL + +  + AG+   I G SG GKST++ ++      +SG +   G D+  L     
Sbjct: 20  AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79

Query: 69  RGNVIGLINQEPVLFATSVRENI 91
           R  V     Q P LF  +V +N+
Sbjct: 80  RQQV-SYCAQTPTLFGDTVYDNL 101

Length = 225

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.2 bits (96), Expect = 9e-05
 Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 28/165 (16%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDL--KHLD 64
           L + N++I      A++G SG GKST +  L R  D+       GN+   G ++   + D
Sbjct: 23  LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82

Query: 65  GTWLRGNVIGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLANAHGFIS 117
              LR   IG++ Q P  F  S+ +NI YG       D    DE +E++ K         
Sbjct: 83  ILELRRK-IGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLK--------- 132

Query: 118 EFPSGALDNE-SEKLVQAALESACKGRTVLMIAHRLSTVQNADLI 161
                AL NE  +KL   AL  +   +  L IA  L+   N  L+
Sbjct: 133 ---KSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILM 174

Length = 254

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 11   ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI 55
            I KD      + +  AIVG +G+GKST+++LL RFYD+ + +  +
Sbjct: 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIV 1227

Length = 1466

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL---KHLDG 65
           +T+L   +L +  G+ VAI+G SG+GK+T++  +       +G I +  + +   + L  
Sbjct: 16  QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75

Query: 66  T-----WLRGNVIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLA 110
                  LR +V G + Q   LF   +V ENI  G   V  E  EEA   A
Sbjct: 76  QKGLIRQLRQHV-GFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARA 125

Length = 250

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62
           T+ ++  + IP G   AI+G +G GKST++  L R    + G++ + G  ++H
Sbjct: 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQH 73

Length = 265

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 46/199 (23%), Positives = 85/199 (42%), Gaps = 40/199 (20%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           L   +  I  G+ V+I+G +G+GKST   L++  ++   G + I G  L   +  W    
Sbjct: 23  LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLT-AENVWNLRR 81

Query: 72  VIGLINQEP--VLFATSVRENIRYG--DSSVSDEQ----IEEAAKLANAHGFISEFPSGA 123
            IG++ Q P       +V +++ +G  +  +  E+    ++EA    N   F +  P+  
Sbjct: 82  KIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARL 141

Query: 124 LDNESEKLVQAAL-----------ESAC----KGR----------------TVLMIAHRL 152
              + +++  A +           ES       GR                TVL I H L
Sbjct: 142 SGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL 201

Query: 153 STVQNADLIVVLQAGQIVE 171
               ++D I+V++AG+I++
Sbjct: 202 DEAASSDRILVMKAGEIIK 220

Length = 277

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGV 58
          K  L+D NL + +G+ + ++G SG GK+T++ L+  F     G+IT+ G 
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGK 63

Length = 255

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 10/104 (9%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           I KD NL I  G+ V  VG SG GKST++ ++    D++SG++ I    +  +     RG
Sbjct: 18  ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA-ERG 76

Query: 71  NVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAA 107
             +G++ Q   L+   SV EN+ +G           ++++ + A
Sbjct: 77  --VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVA 118

Length = 369

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 4  NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKST----IVALLERFYDVSSGNITISGVD 59
          N  +   IL D +L + +GQ +AI+GSSG+GK+T    I   +E     +SG I  +G  
Sbjct: 15 NWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGG-TTSGQILFNGQP 73

Query: 60 LK 61
           K
Sbjct: 74 RK 75

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 23/116 (19%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHL 63
           K  + D ++ I      A++G SG GKST +  + R  D+     S G I   G+++  L
Sbjct: 34  KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI--L 91

Query: 64  DGTWLRGNV------IGLINQEPVLFATSVRENIRYG-------DSSVSDEQIEEA 106
           D      NV      IG++ Q+P  F  S+  NI +          SV DE +EE+
Sbjct: 92  DS---NINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEES 144

Length = 268

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF 45
            +L++ NL I  G  VA+VG SG GK+T++ ++   
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432

Length = 593

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
           +   +L +  GQ + +VG SG+GKST+   L R    S G I   G D+  L    +R
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL-IPSQGEIRFDGQDIDGLSRKEMR 359

Length = 534

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 46/202 (22%), Positives = 79/202 (39%), Gaps = 41/202 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K  L + N   P   ++A++G +G GKST+          +SG++ I G  +   +   +
Sbjct: 17  KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREV 76

Query: 69  RGNVIGLINQEP--VLFATSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFP 120
           R   +GL+ Q P   +F+ +V ++I +G      D      ++  A  +          P
Sbjct: 77  R-KFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP 135

Query: 121 -------------SGALDNESEKLV----QAALE--------------SACKGRTVLMIA 149
                        +G +  E + LV     A L+                  G TV+   
Sbjct: 136 HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFST 195

Query: 150 HRLSTV-QNADLIVVLQAGQIV 170
           H+L  V + AD I V+  G+IV
Sbjct: 196 HQLDLVPEMADYIYVMDKGRIV 217

Length = 277

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 34/188 (18%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG----------VDLK 61
           +++ +  +  G+ +AIVG SG+GKS     L R  + + G +              ++L 
Sbjct: 32  VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91

Query: 62  HLDGTWL---RGNVIGLINQEPV-----LFAT--SVRENIRYGDSSVSDEQIEEAAKLAN 111
                 +   RG  + +I QEP+     +F     + E+IR    +  +E + EA ++ +
Sbjct: 92  EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLD 151

Query: 112 ------AHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 165
                 A   +S +P   L     + V  A+  +C  R  ++IA   +T     L V +Q
Sbjct: 152 QVRIPEAQTILSRYPH-QLSGGMRQRVMIAMALSC--RPAVLIADEPTTA----LDVTIQ 204

Query: 166 AGQIVEML 173
           A QI++++
Sbjct: 205 A-QILQLI 211

Length = 623

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
          +K  +  +  GQ +AI+G +G+GKST+  +L    + +SG I I+   L   D ++ R  
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF-RSK 87

Query: 72 VIGLINQEP 80
           I +I Q+P
Sbjct: 88 RIRMIFQDP 96

Length = 267

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 13/34 (38%), Positives = 24/34 (70%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL 42
             + K+ NL + AG+++AI+G +G GK+T++  L
Sbjct: 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTL 365

Length = 530

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 6/95 (6%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +LK+ NL+I  G+ +AI GS+G+GK++++ L+    + S G I  SG        +W+  
Sbjct: 52  VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEE 105
             I    +E ++F  S  E  RY  S V   Q+EE
Sbjct: 112 GTI----KENIIFGVSYDE-YRY-KSVVKACQLEE 140

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 15  FNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG 74
           F LR   GQ +AI+G +G+GKST+  +L    + +SG + I    L   D ++ R   I 
Sbjct: 34  FTLR--EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSY-RSQRIR 90

Query: 75  LINQEPVLFATSVRENIRYG 94
           +I Q+P   +TS+    R  
Sbjct: 91  MIFQDP---STSLNPRQRIS 107

Length = 267

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 49/203 (24%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKST-IVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           L + N+RIP GQ   IVG  G GKS+ ++A+L     +  G +  S  +         R 
Sbjct: 17  LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL-EGKVHWSNKNESEPSFEATRS 75

Query: 71  N---VIGLINQEPVLFATSVRENIRYGD-------SSVSD--------------EQIEEA 106
                +    Q+P L   +V ENI +G         +V+D              +Q E  
Sbjct: 76  RNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIG 135

Query: 107 AKLANAHG-------------------FISEFPSGALD-NESEKLVQAALESACKG--RT 144
            +  N  G                   F+ + P  ALD + S+ L+Q  +    +   RT
Sbjct: 136 ERGINLSGGQRQRICVARALYQNTNIVFLDD-PFSALDIHLSDHLMQEGILKFLQDDKRT 194

Query: 145 VLMIAHRLSTVQNADLIVVLQAG 167
           ++++ H+L  + +AD I+ ++ G
Sbjct: 195 LVLVTHKLQYLPHADWIIAMKDG 217

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 16  NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG--VDLKHLD 64
           NL I  G+ V ++G +G+GKST+  LL   Y   SG I + G  V  + L+
Sbjct: 343 NLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLE 393

Length = 546

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
          LKD +  IP GQ  +IVG +G+GKSTI  L+     V SG I  +   +   +   LR +
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84

Query: 72 VIGLINQEP 80
           IG++ Q P
Sbjct: 85 -IGIVFQNP 92

Length = 269

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 49/200 (24%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           +T + + +L +P      ++G +G GKST++ ++      +SG I   G         W 
Sbjct: 13  QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP-------WT 65

Query: 69  RGNV--IGLINQEPVLFAT-SVREN--IRYGDSSVSDEQIEEAAKLAN--------AHGF 115
           R ++  IG + + P L+   + REN  +      + D +I+E   + +        A  F
Sbjct: 66  RKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQF 125

Query: 116 ---------------------ISEFPSGALD----NESEKLVQAALESACKGRTVLMIAH 150
                                I + P+  LD     E  +L+++  E   +G TV++ +H
Sbjct: 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE---QGITVILSSH 182

Query: 151 RLSTVQN-ADLIVVLQAGQI 169
            LS VQ  AD I ++  G +
Sbjct: 183 ILSEVQQLADHIGIISEGVL 202

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY---DVSSGNITISGVDLKHLDG 65
          K  L D +  IP G   A++G +G+GKSTI  L+       D  +  IT+ G+ L     
Sbjct: 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTA-KT 78

Query: 66 TWLRGNVIGLINQEP 80
           W     +G++ Q P
Sbjct: 79 VWDIREKVGIVFQNP 93

Length = 282

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 15/94 (15%)

Query: 4   NLRRLKT-ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62
           N     T +LK+ + ++  GQ +A+ GS+G+GKS+++ ++    + S G I  SG     
Sbjct: 433 NFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----- 487

Query: 63  LDGTWLRGNVIGLINQEPVLFATSVRENIRYGDS 96
                     I    Q   +   ++++NI +G S
Sbjct: 488 ---------RISFSPQTSWIMPGTIKDNIIFGLS 512

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD 59
           RR  T +KD +  + AG+ V I G +GNG+S +V  +      +SG I ++G D
Sbjct: 268 RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKD 321

Length = 501

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 9/94 (9%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDL--K 61
           K  +K+ NL +  G   A++G SG GK+T +  + R +D++     +G I + G D+   
Sbjct: 17  KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP 76

Query: 62  HLDGTWLRGNVIGLINQEPVLFAT-SVRENIRYG 94
            +D   +R  V G++ Q+P  F T SV +N+  G
Sbjct: 77  RVDPVAMRRRV-GMVFQKPNPFPTMSVFDNVVAG 109

Length = 252

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 18/79 (22%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIV------ALLERFY--DVSSGNIT-ISGVDLKH 62
           LK+  + IP G    I G SG+GKST++      AL  R        G  T I G  L+H
Sbjct: 624 LKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALANRLNGAKTVPGRYTSIEG--LEH 681

Query: 63  LDGTWLRGNVIGLINQEPV 81
           LD       VI  I+Q P+
Sbjct: 682 LD------KVI-HIDQSPI 693

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVDLKHLDGTW 67
          +L + N  I  G+ V ++G SG GKST+++ +          +G + ++   L  L    
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76

Query: 68 LRGNVIGLINQEPVLFAT-SVRENI 91
           +   IG++ Q+ +LF   SV +N+
Sbjct: 77 RQ---IGILFQDALLFPHLSVGQNL 98

Length = 213

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 39.3 bits (93), Expect = 3e-04
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
          ++D +  + AG+ V I G  GNG++ +   L      +SG IT+ G  +           
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75

Query: 72 VIGLI----NQEPVLFATSVRENI 91
           I  +     +E ++   SV ENI
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENI 99

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 8/90 (8%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDL--KHLD 64
           ++D ++ I   +    +G SG GKST++  L R  D+       G++   G D+  K +D
Sbjct: 24  VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83

Query: 65  GTWLRGNVIGLINQEPVLFATSVRENIRYG 94
              +R   IG++ Q+P  F+ S+ +N+ +G
Sbjct: 84  PVVVR-RYIGMVFQQPNPFSMSIFDNVAFG 112

Length = 261

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--YDVSSGNITISGVDLKHLD 64
            ILK  NL I  G+  AI+G +G+GKST+  ++     Y +  G+I   G  +  L+
Sbjct: 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE 77

Length = 252

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 26/167 (15%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-----GNITISGVDL--K 61
           + IL+  ++ I   +  AI+G SG GKST +  L R  ++ S     G +     ++  +
Sbjct: 20  QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79

Query: 62  HLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVS-------DEQIEEAAKLANAHG 114
            ++   LR  V  +++ +P LF  SV +N+ YG   V        D+ +E A K A+   
Sbjct: 80  RVNLNRLRRQV-SMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDAD--- 135

Query: 115 FISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLI 161
                     D    K+ ++AL+ +   +  L IA  L+      L+
Sbjct: 136 --------LWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLM 174

Length = 261

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 18/125 (14%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS--------SGNITISG 57
           RR + IL+D +LRI  G+  A++G +G GKST++  L               +G++T++G
Sbjct: 11  RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70

Query: 58  VDLKHLDGTWLRGNVIGLINQEPVLFATSVRENI---------RYGDSSVSDEQIEEAA- 107
             L  +D   L      L       FA S RE +         R G  +  D +I   A 
Sbjct: 71  EPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQAL 130

Query: 108 KLANA 112
            LA A
Sbjct: 131 ALAGA 135

Length = 272

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 5  LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57
            R    LK  +  I  G+ V  +G +G GK+T + +L      +SG + ++G
Sbjct: 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG 82

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 61/220 (27%)

Query: 5   LRRLKTILKDF---------NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI 55
           L +LK I K F          L +  G+ +A+VG +G GKST++ +L   Y   +G+I  
Sbjct: 4   LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY 63

Query: 56  SG--VDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENI--------------------- 91
            G  V       +   G  IG+I+QE  L    ++ ENI                     
Sbjct: 64  LGKEVTFNGPKSSQEAG--IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAE 121

Query: 92  ----------------RYGDSSVSDEQIEEAAKLANAHGF-----ISEFPSGAL-DNESE 129
                             G+ S+ ++Q+ E AK      F     I + P+ AL D E+E
Sbjct: 122 ADKLLARLNLRFSSDKLVGELSIGEQQMVEIAK---VLSFESKVIIMDEPTDALTDTETE 178

Query: 130 KLVQAALESACKGRTVLMIAHRLSTV-QNADLIVVLQAGQ 168
            L +   E   +GR ++ I+HRL  + +  D + V + GQ
Sbjct: 179 SLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQ 218

Length = 501

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 41/200 (20%), Positives = 79/200 (39%), Gaps = 43/200 (21%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K  + + +  +P G+   ++G +G GK+T   ++    + + G IT +G  L        
Sbjct: 15  KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEI---- 70

Query: 69  RGNVIGLINQEPVLFA-TSVRENIRY---------GDSSVSDEQIEEAAKLANAHG---- 114
             N IG + +E  L+   +V + ++Y          +     +   E  ++         
Sbjct: 71  -KNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIK 129

Query: 115 -----------FIS------EF-----PSGALDNESEKLV-QAALESACKGRTVLMIAHR 151
                      FIS      E      P   LD  + +L+  A  E   +G T++  +HR
Sbjct: 130 ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHR 189

Query: 152 LSTVQN-ADLIVVLQAGQIV 170
           +  V+   D +++L+ GQ V
Sbjct: 190 MEHVEELCDRLLMLKKGQTV 209

Length = 300

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 19/45 (42%), Positives = 28/45 (62%)

Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI 55
          +LK+ +L + AG+ VA+ G SG GKST++  L   Y   SG I +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV 67

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 13/34 (38%), Positives = 26/34 (76%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL 42
           K ++KDF+ ++  G K+A++G +G GK+T++ L+
Sbjct: 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLM 365

Length = 635

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDLKHLDG 65
           +L   NL IP     A++G SG+GKST++ +  R  ++      SG + + G D+  +D 
Sbjct: 18  VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77

Query: 66  TWLRGNVIGLINQEPVLFAT-SVRENIRYG 94
             LR  V  ++ Q P      S+ EN+  G
Sbjct: 78  IELRRRV-QMVFQIPNPIPNLSIFENVALG 106

Length = 250

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 107 AKLANAHGFISEFPSGALDNESEKLVQAALES--ACKGRTVLMIAHRLSTVQNADLIVVL 164
           A + N    I +  + +LDN+SE LVQ  + +    + R  ++IAHRLST++ A+ I VL
Sbjct: 593 AIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVL 652

Length = 1466

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 16/105 (15%)

Query: 1   MAGNLRRLKTILKDF---------NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS- 50
           M   L  +K I K F         +L++ AG+ V++ G +G GKST++ +L   Y   + 
Sbjct: 1   MMEYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY 60

Query: 51  -GNITISGVDLK--HLDGTWLRGNVIGLINQEPVLFAT-SVRENI 91
            G I   G +L+  ++  T   G  I  I+QE  L    SV ENI
Sbjct: 61  EGEIIFEGEELQASNIRDTERAGIAI--IHQELALVKELSVLENI 103

Length = 506

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 60/222 (27%), Positives = 85/222 (38%), Gaps = 81/222 (36%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           LK  NL I  G+ ++++G SG GKST++ L             ISG+      G  L G 
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNL-------------ISGLAQPTSGGVILEGK 47

Query: 72  VIGLINQEP-----VLFAT-------SVRENIRYGDSSVS------------DEQIE--- 104
            I     EP     V+F         +VRENI      V             +E I    
Sbjct: 48  QI----TEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVG 103

Query: 105 --EAA-------------KLANAHG-------FISEFPSGALD-----NESEKLVQAALE 137
             EAA             ++A A          + + P GALD     N  E+L+Q   E
Sbjct: 104 LTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE 163

Query: 138 SACKGRTVLMIAHRL-STVQNADLIVVL------QAGQIVEM 172
                 TVLM+ H +   +  +D +V+L        GQI+E+
Sbjct: 164 HRV---TVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 40/200 (20%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
           T L   +  + AG+ + +VG +G GKST++A +       SG+I  +G  L+    T L 
Sbjct: 13  TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELA 71

Query: 70  GNVIGLINQEPVLFATSVRENIR-YGDSSVSDEQIEEAAKL------------------- 109
            +   L  Q+   FA  V   +  +       E + + A                     
Sbjct: 72  RHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEW 131

Query: 110 ---------------ANAHG--FISEFPSGALDNESEKLVQAALESACK-GRTVLMIAHR 151
                          AN  G   + + P  +LD   +  +   L + C+ G  ++M +H 
Sbjct: 132 QRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHD 191

Query: 152 LS-TVQNADLIVVLQAGQIV 170
           L+ T+++A    +L+ G+++
Sbjct: 192 LNHTLRHAHRAWLLKRGKLL 211

Length = 248

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 9/102 (8%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           ++  + R+  G+   ++G +G GK+T + +L      +SG  T++G D+   +   +R  
Sbjct: 16  VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRR 74

Query: 72  VIGLINQEPVL-FATSVRENIR-----YG-DSSVSDEQIEEA 106
            IG++ Q+  +    +  EN+      YG   +   E+I+E 
Sbjct: 75  -IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDEL 115

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 38.9 bits (92), Expect = 8e-04
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 17/86 (19%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG-TW 67
          K ILKD +L    G K+ ++G +G GKST++ +             ++GVD K  +G   
Sbjct: 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRI-------------MAGVD-KEFEGEAR 65

Query: 68 LR-GNVIGLINQEPVLFAT-SVRENI 91
             G  +G + QEP L    +VREN+
Sbjct: 66 PAPGIKVGYLPQEPQLDPEKTVRENV 91

Length = 556

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 3   GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62
            ++++    +   +  +  G+   ++G +G GK+T + +L    +  +G  T+ G D+  
Sbjct: 12  RDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK 71

Query: 63  LDGTWLRGNVIGLINQEPVLFA-TSVRENIRY 93
                 R   +G ++    L+   + REN+ Y
Sbjct: 72  EPAEARRR--LGFVSDSTGLYDRLTARENLEY 101

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed

 Score = 38.5 bits (91), Expect = 0.001
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 24/94 (25%)

Query: 2   AGNLRRLKTI------LKDFNLRIPAGQKVAIVGSSGNGKSTIV------ALLERFY--- 46
            GN + LK        LK+ ++ IP G+   + G SG+GKST++      AL  +     
Sbjct: 609 KGNGKFLKLKGARENNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAK 668

Query: 47  DVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP 80
            V   +  I G  L+HLD       VI  I+Q P
Sbjct: 669 KVPGKHKEIEG--LEHLD------KVID-IDQSP 693

Length = 943

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD 59
          +D +  IP G+ V  +G++G GKST + +L      +SG + ++G D
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD 87

Length = 325

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.2 bits (88), Expect = 0.001
 Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 45/203 (22%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL----KHLDGTW 67
           L D +L +  G   A++G +G+GKST++  L      + G +T+  + +    K  +   
Sbjct: 22  LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81

Query: 68  LRGNVIGLINQEP--VLFATSVRENIRYGDSS--VSDEQIEE-AAKLANAHGFISEF--- 119
           +R  V G++ Q P   LF  +V +++ +G  +  +  E+ E+ AA+     G   EF   
Sbjct: 82  VRKKV-GVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEK 140

Query: 120 ------------------------------PSGALDNESEKLVQAALESACK-GRTVLMI 148
                                         P+  LD ++   +    ES  + G+TV+++
Sbjct: 141 SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLV 200

Query: 149 AHRLSTVQN-ADLIVVLQAGQIV 170
            H +  V + AD + +L+ G I+
Sbjct: 201 THLMDDVADYADYVYLLEKGHII 223

Length = 288

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 28/151 (18%)

Query: 22  GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV 81
           G+ + IVG  G+GK+T+   L R      G +         +DG  +   V+  +    V
Sbjct: 2   GEVILIVGPPGSGKTTLARALARELGPPGGGVIY-------IDGEDILEEVLDQLLLIIV 54

Query: 82  LFATSVRENIRYGDSSVSDEQIEEAAKLANAHG----FISEFPSGALDNESEKLVQAALE 137
                         S   + ++  A  LA         + E  +  LD E E L+    E
Sbjct: 55  G---------GKKASGSGELRLRLALALARKLKPDVLILDE-ITSLLDAEQEALLLLLEE 104

Query: 138 SA-------CKGRTVLMIAHRLSTVQNADLI 161
                     K  TV++  +    +  A L 
Sbjct: 105 LRLLLLLKSEKNLTVILTTNDEKDLGPALLR 135

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 62/222 (27%), Positives = 92/222 (41%), Gaps = 58/222 (26%)

Query: 5   LRRLKTILKDF---------NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS--GNI 53
           L  +K I+K F         +L +  G+ V + G +G GKST++ +L   Y   +  G I
Sbjct: 1   LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 60

Query: 54  TISGVDLK--HLDGTWLRGNVIGLINQEPVLFAT-SVRENIRYGDS-------------- 96
             SG  LK  ++  T   G VI  I+QE  L    SV ENI  G+               
Sbjct: 61  YWSGSPLKASNIRDTERAGIVI--IHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY 118

Query: 97  -------------------SVSD-----EQIEEAAKLAN--AHGFISEFPSGAL-DNESE 129
                               V D     +Q+ E AK  N  A   I + PS +L + E+E
Sbjct: 119 LRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETE 178

Query: 130 KLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 170
            L+    +    G   + I+H+L+ V+   D I V++ GQ V
Sbjct: 179 ILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 10/123 (8%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
           +RL     D N  +PA    A+ G SG+GK++++ ++        G I ++G   + L  
Sbjct: 8   QRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNG---RVLVD 64

Query: 66  TWLRGNV------IGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLANAHGFISE 118
                 +      IG + Q+  LF   +VR N+RYG       Q ++   L      +  
Sbjct: 65  AEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDR 124

Query: 119 FPS 121
           +P 
Sbjct: 125 YPG 127

Length = 352

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK 61
          +LK  +L+  AG  ++I+GSSG+GKST +  +      S G+I ++G  + 
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTIN 70

Length = 257

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 15/102 (14%)

Query: 23  QKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG-VDLKHLDGTWLRGNV------IGL 75
           +  AI+G SG GKST +  L R  ++  G + + G VD    +    R N+      IG+
Sbjct: 34  KVTAIIGPSGCGKSTFIKTLNRISEL-EGPVKVEGVVDFFGQNIYDPRININRLRRQIGM 92

Query: 76  INQEPVLFATSVRENIRYG-------DSSVSDEQIEEAAKLA 110
           + Q P  F  S+ EN+ YG         +  DE +E A K A
Sbjct: 93  VFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGA 134

Length = 259

>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIV 39
           LK+ ++ IP G    + G SG+GKST++
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLI 644

Length = 935

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 18/79 (22%)

Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIV------ALLERFY--DVSSGNIT-ISGVDLKH 62
          LK+ ++ IP G    + G SG+GKS+++      AL  R +      GN   I G  L+H
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEG--LEH 68

Query: 63 LDGTWLRGNVIGLINQEPV 81
          +D       VI +I+Q P+
Sbjct: 69 ID------KVI-VIDQSPI 80

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 47/193 (24%), Positives = 77/193 (39%), Gaps = 33/193 (17%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGV--------DLKHL 63
           L   +LRI  G  V IVG +G GKST+  L    Y    G I + G         D + L
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417

Query: 64  DGT-----WLRGNVIG--------LINQEPVLFATSVRENIRYGD---SSVSDEQIEEAA 107
                    L  ++IG        L N +  L    + + ++  D   S+ +     +  
Sbjct: 418 FSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477

Query: 108 KLANAHGFISEFPSGALDNES-------EKLVQAALESACK--GRTVLMIAHRLSTVQNA 158
           +LA    ++ + P    D  +       ++     L    K  G+T+++I+H     + A
Sbjct: 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELA 537

Query: 159 DLIVVLQAGQIVE 171
           D I+ L AG IV+
Sbjct: 538 DQIIKLAAGCIVK 550

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDL--KHL 63
           ++K  +L+IP     A++G SG GKST++    R  +++      G + + G ++    +
Sbjct: 19  VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78

Query: 64  DGTWLRGNVIGLINQEPVLFA-TSVRENIRYG 94
           D   +R  V G++ Q P  F   ++ +N+  G
Sbjct: 79  DPIEVRREV-GMVFQYPNPFPHLTIYDNVAIG 109

Length = 253

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 11/70 (15%)

Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
          +L++ +L + AG+ V + G SG+GKST++  L   Y    G I +     +H +G W   
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILV-----RH-EGEW--- 76

Query: 71 NVIGLINQEP 80
            + L+  EP
Sbjct: 77 --VDLVTAEP 84

Length = 235

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 8   LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
           LK +     LR+  G+ + +VG SG GKST    +      + G +   G DL  +    
Sbjct: 34  LKAV-DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDE 92

Query: 68  LRG--NVIGLINQEP 80
            R   + I +I Q+P
Sbjct: 93  WRAVRSDIQMIFQDP 107

Length = 331

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 11/106 (10%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD-LKHLDGTWLRG 70
           +   N ++  G+    +G +G GK+T + +L      +SG   ++G D ++      +R 
Sbjct: 9   VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK--VR- 65

Query: 71  NVIGLINQEPVLF-ATSVRENIR-----YGDS-SVSDEQIEEAAKL 109
             IG++ Q   +    + REN+      YG     ++E+ EE  +L
Sbjct: 66  RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLEL 111

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 18/51 (35%), Positives = 34/51 (66%)

Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK 61
          +LK  +L+  AG  ++I+GSSG+GKST +  +      S+G+I ++G +++
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIR 71

Length = 256

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
KOG0058|consensus	716		100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
KOG0055|consensus	1228		100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
KOG0057|consensus	591		100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
KOG0055|consensus	1228		100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
KOG0056|consensus	790		100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
KOG0054|consensus	1381		100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.98
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.98
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.98
PLN03130	1622	ABC transporter C family member; Provisional	99.98
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.98
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.98
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.98
PLN03232	1495	ABC transporter C family member; Provisional	99.98
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.98
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.97
COG4172	534	ABC-type uncharacterized transport system, duplica	99.97
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.97
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.97
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.97
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.97
PRK11147	635	ABC transporter ATPase component; Reviewed	99.97
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.97
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.97
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.97
PRK10938	490	putative molybdenum transport ATP-binding protein	99.97
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.97
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.97
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.97
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.97
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.97
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.97
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.97
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.97
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.97
PLN03140	1470	ABC transporter G family member; Provisional	99.96
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.96
PRK13409	590	putative ATPase RIL; Provisional	99.96
PTZ00243	1560	ABC transporter; Provisional	99.96
KOG0054|consensus	1381		99.96
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.96
PLN03073	718	ABC transporter F family; Provisional	99.96
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.96
PLN03140	1470	ABC transporter G family member; Provisional	99.96
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.96
COG4172	534	ABC-type uncharacterized transport system, duplica	99.96
PRK11147	635	ABC transporter ATPase component; Reviewed	99.96
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.96
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.96
PRK13409	590	putative ATPase RIL; Provisional	99.96
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.96
KOG0059|consensus	885		99.95
KOG0061|consensus	613		99.95
COG0488	530	Uup ATPase components of ABC transporters with dup	99.95
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.94
COG0488	530	Uup ATPase components of ABC transporters with dup	99.93
PLN03073	718	ABC transporter F family; Provisional	99.93
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.93
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.93
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.92
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.92
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.91
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.9
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.89
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.89
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.87
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.87
KOG0065|consensus	1391		99.87
COG4178	604	ABC-type uncharacterized transport system, permeas	99.86
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.85
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.85
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.85
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.84
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.82
KOG0927|consensus	614		99.82
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.82
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.81
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.8
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.78
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.77
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.76
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.75
KOG2355|consensus	291		99.72
KOG0060|consensus	659		99.72
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.72
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.72
KOG0066|consensus	807		99.71
KOG0062|consensus	582		99.7
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.7
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.7
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.7
KOG0927|consensus	614		99.69
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.69
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.68
KOG0064|consensus	728		99.66
KOG0065|consensus	1391		99.65
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.64
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.62
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.61
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.59
KOG0062|consensus	582		99.59
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.58
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.57
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.56
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.48
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.47
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.47
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.45
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.37
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.37
COG3910	233	Predicted ATPase [General function prediction only	99.33
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.32
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.26
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.26
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.25
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.24
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	99.22
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	99.2
PRK00300	205	gmk guanylate kinase; Provisional	99.17
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	99.16
KOG0063|consensus	592		99.14
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.13
KOG0066|consensus	807		99.13
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	99.1
PRK09825	176	idnK D-gluconate kinase; Provisional	99.1
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.0
cd01128	249	rho_factor Transcription termination factor rho is	99.0
PRK00064	361	recF recombination protein F; Reviewed	98.97
PRK08149	428	ATP synthase SpaL; Validated	98.96
PRK13695	174	putative NTPase; Provisional	98.92
PRK01889	356	GTPase RsgA; Reviewed	98.92
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.91
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.9
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.89
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.88
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.87
PRK06315	442	type III secretion system ATPase; Provisional	98.87
PRK10416	318	signal recognition particle-docking protein FtsY;	98.82
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.81
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.8
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.77
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.77
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.75
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	98.74
PLN02796	347	D-glycerate 3-kinase	98.73
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.73
PRK09099	441	type III secretion system ATPase; Provisional	98.73
PRK09862	506	putative ATP-dependent protease; Provisional	98.72
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.72
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.71
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.7
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.69
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.68
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	98.66
KOG0063|consensus	592		98.66
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.66
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.65
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.65
PLN02318	656	phosphoribulokinase/uridine kinase	98.65
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.63
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.62
PTZ00035	337	Rad51 protein; Provisional	98.62
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.61
smart00382	148	AAA ATPases associated with a variety of cellular	98.6
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	98.6
PRK05922	434	type III secretion system ATPase; Validated	98.6
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	98.56
PRK13830	818	conjugal transfer protein TrbE; Provisional	98.56
PRK03846	198	adenylylsulfate kinase; Provisional	98.56
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.55
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	98.54
PRK04863	1486	mukB cell division protein MukB; Provisional	98.54
PRK00098	298	GTPase RsgA; Reviewed	98.53
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.53
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.53
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	98.53
PRK11545	163	gntK gluconate kinase 1; Provisional	98.51
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.5
PRK06067	234	flagellar accessory protein FlaH; Validated	98.5
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.49
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.47
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.47
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	98.47
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.43
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.43
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.42
PRK09183	259	transposase/IS protein; Provisional	98.41
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	98.41
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.41
PRK06820	440	type III secretion system ATPase; Validated	98.4
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	98.4
PRK06936	439	type III secretion system ATPase; Provisional	98.4

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1e-46  Score=285.60  Aligned_cols=171  Identities=29%  Similarity=0.439  Sum_probs=140.8

Q ss_pred             ccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC-ChhhhccCcEEEEccCCCCc
Q psy10472          5 LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL-DGTWLRGNVIGLINQEPVLF   83 (181)
Q Consensus         5 ~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~-~~~~~r~~~i~~v~q~~~l~   83 (181)
                      ..+...+|++||++|++||+++|+||||||||||||||++|.+|++|+|.++|+++... +...+|++ +|+|||+++||
T Consensus        11 ~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~-vGmVFQ~fnLF   89 (240)
T COG1126          11 SFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK-VGMVFQQFNLF   89 (240)
T ss_pred             EeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh-cCeeccccccc
Confidence            34557799999999999999999999999999999999999999999999999877433 34556765 99999999999


Q ss_pred             cc-cHHHHhhcCCC---CCCHHH----HHHHHHHhcccc-----------------------------ccccCCCCCCCH
Q psy10472         84 AT-SVRENIRYGDS---SVSDEQ----IEEAAKLANAHG-----------------------------FISEFPSGALDN  126 (181)
Q Consensus        84 ~~-tv~enl~~~~~---~~~~~~----~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~  126 (181)
                      |. ||.||+.++..   ..++++    ..+.++.+++.+                             ++.|+|||+|||
T Consensus        90 PHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDP  169 (240)
T COG1126          90 PHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDP  169 (240)
T ss_pred             ccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCH
Confidence            86 99999998741   122222    223344444332                             456789999999


Q ss_pred             HHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        127 ESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       127 ~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      +...++++.+++++ +|.|+|+|||++.++.. ||||++|++|++++. ++++
T Consensus       170 Elv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~-g~p~  221 (240)
T COG1126         170 ELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE-GPPE  221 (240)
T ss_pred             HHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEe-cCHH
Confidence            99999999999876 59999999999999977 999999999999885 4443

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-44  Score=279.24  Aligned_cols=172  Identities=31%  Similarity=0.483  Sum_probs=147.6

Q ss_pred             CCccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC
Q psy10472          3 GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL   82 (181)
Q Consensus         3 ~~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l   82 (181)
                      ++....+.+++++||+|++||+++++|||||||||+||+|++|++|++|+|+|+|+++.+.+..++|++ ||||-|...|
T Consensus         8 sk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~-IGYviQqigL   86 (309)
T COG1125           8 SKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK-IGYVIQQIGL   86 (309)
T ss_pred             ehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHh-hhhhhhhccc
Confidence            444556789999999999999999999999999999999999999999999999999999999999876 9999999999


Q ss_pred             ccc-cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-------------------------------ccccCCCCCC
Q psy10472         83 FAT-SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-------------------------------FISEFPSGAL  124 (181)
Q Consensus        83 ~~~-tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-------------------------------~~~~~P~~~L  124 (181)
                      ||. ||.|||++-..  ..+    ++++++.++++++..                               ++.++||++|
T Consensus        87 FPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgAL  166 (309)
T COG1125          87 FPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGAL  166 (309)
T ss_pred             CCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCcccc
Confidence            986 99999987532  223    345566777766642                               3456799999


Q ss_pred             CHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        125 DNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       125 D~~~~~~i~~~l~~~~~--~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      ||.++..+.+.+..+++  ++|||+||||++++.. +|||.+|++|+++.+ +.+
T Consensus       167 DpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~-~~P  220 (309)
T COG1125         167 DPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY-DTP  220 (309)
T ss_pred             ChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe-CCH
Confidence            99999999999988753  8999999999999865 999999999999984 443

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.4e-44  Score=283.05  Aligned_cols=163  Identities=31%  Similarity=0.491  Sum_probs=141.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCcc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFA-   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~-   84 (181)
                      ..+|+||||+|++||+++|+|.||||||||+||+++|.+|++|+|.++|+++..++...   .|+ +||++||+++|+. 
T Consensus        19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~-~IGMIFQhFnLLss   97 (339)
T COG1135          19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQ-KIGMIFQHFNLLSS   97 (339)
T ss_pred             eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHh-hccEEecccccccc
Confidence            46999999999999999999999999999999999999999999999999998887654   444 4999999999997 


Q ss_pred             ccHHHHhhcCCCC--C----CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         85 TSVRENIRYGDSS--V----SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        85 ~tv~enl~~~~~~--~----~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                      .||++|++|+...  .    .++++.++++.+++.+                             ++.|+||++|||++.
T Consensus        98 rTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT  177 (339)
T COG1135          98 RTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT  177 (339)
T ss_pred             chHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHH
Confidence            5999999997421  1    2345566677666654                             456779999999999


Q ss_pred             HHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        130 KLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       130 ~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +.++++|++.. + |.||++|||.|+.++. ||||.+|++|++++.
T Consensus       178 ~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~  223 (339)
T COG1135         178 QSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEE  223 (339)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence            99999999875 3 9999999999999987 999999999999984

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=3.4e-43  Score=271.35  Aligned_cols=163  Identities=35%  Similarity=0.506  Sum_probs=138.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---hhhccCcEEEEccCCCCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWLRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~~i~~v~q~~~l~~~   85 (181)
                      ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.|+|+++..++.   ..+|++.||||||++.|++.
T Consensus        18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~   97 (226)
T COG1136          18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD   97 (226)
T ss_pred             eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence            469999999999999999999999999999999999999999999999999988874   34677779999999999986


Q ss_pred             -cHHHHhhcCC----CCC--CHHHHHHHHHHhcccc------------------------------ccccCCCCCCCHHH
Q psy10472         86 -SVRENIRYGD----SSV--SDEQIEEAAKLANAHG------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        86 -tv~enl~~~~----~~~--~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~~~  128 (181)
                       |+.||+.++.    ...  ..+..+..++.+++.+                              ++.|+||++||.++
T Consensus        98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t  177 (226)
T COG1136          98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT  177 (226)
T ss_pred             CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHH
Confidence             9999998641    111  1233455555555432                              35677999999999


Q ss_pred             HHHHHHHHHHhc--CCcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472        129 EKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVE  171 (181)
Q Consensus       129 ~~~i~~~l~~~~--~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~  171 (181)
                      .+.+++++.++.  .|+|+|+||||+..+..|||++.|++|++..
T Consensus       178 ~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~  222 (226)
T COG1136         178 AKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE  222 (226)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence            999999999874  3899999999999999999999999999643

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-43  Score=289.48  Aligned_cols=171  Identities=28%  Similarity=0.443  Sum_probs=145.2

Q ss_pred             ccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc
Q psy10472          5 LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA   84 (181)
Q Consensus         5 ~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~   84 (181)
                      ..+...+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++..+++.+   +.||+|||++.|||
T Consensus        14 ~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~k---R~ig~VFQ~YALFP   90 (352)
T COG3842          14 SFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK---RPIGMVFQSYALFP   90 (352)
T ss_pred             ecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhh---cccceeecCcccCC
Confidence            344567999999999999999999999999999999999999999999999999999988653   34999999999998


Q ss_pred             c-cHHHHhhcCCCC---CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHH
Q psy10472         85 T-SVRENIRYGDSS---VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNE  127 (181)
Q Consensus        85 ~-tv~enl~~~~~~---~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~  127 (181)
                      . ||+|||+|+.+.   ..    .+++.++++.+++.+                             ++.|+|.++||..
T Consensus        91 HltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~k  170 (352)
T COG3842          91 HMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAK  170 (352)
T ss_pred             CCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHH
Confidence            6 999999999651   12    235677777776654                             3556799999999


Q ss_pred             HHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchhh
Q psy10472        128 SEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       128 ~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      .+.++...++++.  .|.|.|+||||.+++.. +|||.+|++|+|.. .+++++.
T Consensus       171 LR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q-~gtP~ei  224 (352)
T COG3842         171 LREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ-VGTPEEI  224 (352)
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceee-cCCHHHH
Confidence            9999999998764  39999999999999855 99999999999987 5655543

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=5.8e-43  Score=274.84  Aligned_cols=169  Identities=30%  Similarity=0.449  Sum_probs=144.5

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc-cc
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF-AT   85 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~-~~   85 (181)
                      +.+++++|+||+|++||+++|+||||||||||||+|+|+++|.+|+|+++|+++.+++.+++.++ +|||||.+... +.
T Consensus        13 ~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~-ia~vpQ~~~~~~~~   91 (258)
T COG1120          13 GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKK-LAYVPQSPSAPFGL   91 (258)
T ss_pred             CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhh-EEEeccCCCCCCCc
Confidence            35679999999999999999999999999999999999999999999999999999998887765 99999997554 56


Q ss_pred             cHHHHhhcCCCC-------C---CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCH
Q psy10472         86 SVRENIRYGDSS-------V---SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDN  126 (181)
Q Consensus        86 tv~enl~~~~~~-------~---~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~  126 (181)
                      ||+|-+.+|+..       .   +.+.+.++++.+++..                             ++.|+||++||.
T Consensus        92 tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi  171 (258)
T COG1120          92 TVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDI  171 (258)
T ss_pred             EEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCH
Confidence            999999988432       1   2234667777666544                             356779999999


Q ss_pred             HHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        127 ESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       127 ~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      .++.+++++++++.  +|.|+|+|+||++.+.. ||++++|++|+++. .+.++
T Consensus       172 ~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a-~G~p~  224 (258)
T COG1120         172 AHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVA-QGTPE  224 (258)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe-ecCcc
Confidence            99999999999875  38999999999999855 99999999999998 45544

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.7e-42  Score=268.34  Aligned_cols=158  Identities=32%  Similarity=0.443  Sum_probs=133.2

Q ss_pred             cccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc
Q psy10472          6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         6 ~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~   85 (181)
                      .+...+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|.++|+.+....      ..++||||++.|||.
T Consensus        13 f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~------~~~~~vFQ~~~LlPW   86 (248)
T COG1116          13 FGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG------PDIGYVFQEDALLPW   86 (248)
T ss_pred             eCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC------CCEEEEeccCcccch
Confidence            34467999999999999999999999999999999999999999999999999873321      238999999999997


Q ss_pred             -cHHHHhhcCCCCC------CHHHHHHHHHHhccccc-----------------------------cccCCCCCCCHHHH
Q psy10472         86 -SVRENIRYGDSSV------SDEQIEEAAKLANAHGF-----------------------------ISEFPSGALDNESE  129 (181)
Q Consensus        86 -tv~enl~~~~~~~------~~~~~~~~~~~~~~~~~-----------------------------~~~~P~~~LD~~~~  129 (181)
                       ||+||+.++....      ..+++.++++.+++.++                             +.|+||++||..++
T Consensus        87 ~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR  166 (248)
T COG1116          87 LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTR  166 (248)
T ss_pred             hhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHH
Confidence             9999999984321      13346677777776553                             55779999999999


Q ss_pred             HHHHHHHHHh-c-CCcEEEEEecCchhhhc-CCeEEEEeC--CeE
Q psy10472        130 KLVQAALESA-C-KGRTVLMIAHRLSTVQN-ADLIVVLQA--GQI  169 (181)
Q Consensus       130 ~~i~~~l~~~-~-~~~tii~vtHd~~~~~~-~d~v~~l~~--G~i  169 (181)
                      ..+.+.+.++ . .++|+++||||.+++-. +|||++|.+  |++
T Consensus       167 ~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i  211 (248)
T COG1116         167 EELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI  211 (248)
T ss_pred             HHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence            9999998774 4 48999999999999976 999999998  445

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-42  Score=273.99  Aligned_cols=172  Identities=28%  Similarity=0.454  Sum_probs=141.1

Q ss_pred             cccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc
Q psy10472          6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         6 ~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~   85 (181)
                      .+...+++|||++|+.||.++|+||||||||||||+|+||..|++|+|.++|+.+.+.+....+.++||||||++.+|+.
T Consensus        12 ~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H   91 (345)
T COG1118          12 FGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH   91 (345)
T ss_pred             cccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence            34456899999999999999999999999999999999999999999999999443333223344569999999999975


Q ss_pred             -cHHHHhhcCCCC--------CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHH
Q psy10472         86 -SVRENIRYGDSS--------VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNE  127 (181)
Q Consensus        86 -tv~enl~~~~~~--------~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~  127 (181)
                       ||.+||+||.+.        ..+.++.+.++.+++.+                             ++.|+|+++||..
T Consensus        92 mtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~  171 (345)
T COG1118          92 MTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK  171 (345)
T ss_pred             chHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHH
Confidence             999999998521        12445666677666554                             3567799999999


Q ss_pred             HHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472        128 SEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       128 ~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      .+..+...|+++. + |.|+++||||.+++.. ||||++|++|+|.. .+++++
T Consensus       172 vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq-vg~p~e  224 (345)
T COG1118         172 VRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ-VGPPDE  224 (345)
T ss_pred             HHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee-eCCHHH
Confidence            9999999998864 4 8999999999999966 99999999999987 455443

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.2e-42  Score=265.52  Aligned_cols=172  Identities=29%  Similarity=0.498  Sum_probs=141.6

Q ss_pred             ccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCC
Q psy10472          5 LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPV   81 (181)
Q Consensus         5 ~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~   81 (181)
                      .++.+.|+++|||+|++||+++|+||||||||||||+|.|+++|++|+|.++|+++.+++..   ..|++ +|++||...
T Consensus        17 ~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r-~GvlFQ~gA   95 (263)
T COG1127          17 SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKR-MGVLFQQGA   95 (263)
T ss_pred             ecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhh-eeEEeeccc
Confidence            34557899999999999999999999999999999999999999999999999999888764   34554 999999999


Q ss_pred             Cccc-cHHHHhhcCCCC---CCHHHHHH----HHHHhcccc------------------------------ccccCCCCC
Q psy10472         82 LFAT-SVRENIRYGDSS---VSDEQIEE----AAKLANAHG------------------------------FISEFPSGA  123 (181)
Q Consensus        82 l~~~-tv~enl~~~~~~---~~~~~~~~----~~~~~~~~~------------------------------~~~~~P~~~  123 (181)
                      ||.. ||+||++|+.+.   ..+..+++    .++.+++..                              ++.|+||++
T Consensus        96 LFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsG  175 (263)
T COG1127          96 LFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSG  175 (263)
T ss_pred             cccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCC
Confidence            9975 999999997432   22332222    223333322                              356789999


Q ss_pred             CCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472        124 LDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~~--~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      |||.+...+.++++++++  |.|+++||||++.+.. |||++++.+|+|+. .++.++
T Consensus       176 LDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~-~Gt~~e  232 (263)
T COG1127         176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIA-EGTPEE  232 (263)
T ss_pred             CCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEE-eCCHHH
Confidence            999999999999998764  8999999999999866 99999999999987 455443

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.7e-42  Score=279.49  Aligned_cols=164  Identities=30%  Similarity=0.478  Sum_probs=141.8

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHH
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRE   89 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~e   89 (181)
                      +++++||+|++||+++|+||||||||||||+|+||.+|++|+|+|+|++++++++.+   +.||+|||++.|||. ||+|
T Consensus        18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~---R~iamVFQ~yALyPhmtV~~   94 (338)
T COG3839          18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---RGIAMVFQNYALYPHMTVYE   94 (338)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH---CCEEEEeCCccccCCCcHHH
Confidence            899999999999999999999999999999999999999999999999999988764   349999999999986 9999


Q ss_pred             HhhcCCCCC------CHHHHHHHHHHhccccc-----------------------------cccCCCCCCCHHHHHHHHH
Q psy10472         90 NIRYGDSSV------SDEQIEEAAKLANAHGF-----------------------------ISEFPSGALDNESEKLVQA  134 (181)
Q Consensus        90 nl~~~~~~~------~~~~~~~~~~~~~~~~~-----------------------------~~~~P~~~LD~~~~~~i~~  134 (181)
                      |++|+.+..      .++++.++++.+++.++                             +.|+|.++||...+..+..
T Consensus        95 Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~  174 (338)
T COG3839          95 NIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRS  174 (338)
T ss_pred             HhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHH
Confidence            999985421      24566777777766553                             4566999999999999999


Q ss_pred             HHHHhcC--CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472        135 ALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       135 ~l~~~~~--~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      .++++.+  +.|+|+||||..++.. +|||.+|++|++.+ .+.+.+
T Consensus       175 ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q-~g~p~e  220 (338)
T COG3839         175 EIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ-VGTPLE  220 (338)
T ss_pred             HHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee-cCChHH
Confidence            9988653  8999999999999865 99999999999987 455443

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=7.5e-42  Score=254.35  Aligned_cols=163  Identities=29%  Similarity=0.447  Sum_probs=141.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~~   85 (181)
                      +++|+||||+|++||++.|+||||||||||||+|++..+|+.|+|.++|+++..++..+   +|++ ||+|||+..|++.
T Consensus        15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~-IGvVFQD~rLL~~   93 (223)
T COG2884          15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ-IGVVFQDFRLLPD   93 (223)
T ss_pred             chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe-eeeEeeecccccc
Confidence            56999999999999999999999999999999999999999999999999998876543   4554 9999999999875


Q ss_pred             -cHHHHhhcCCCC------CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         86 -SVRENIRYGDSS------VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        86 -tv~enl~~~~~~------~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                       ||+||++|+..-      .-++++.++++.+++.+                             ++.|+||++|||...
T Consensus        94 ~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s  173 (223)
T COG2884          94 RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS  173 (223)
T ss_pred             chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHH
Confidence             999999997421      12345666777766543                             467889999999999


Q ss_pred             HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      .+++.++.++. .|+||+|+|||.+.+.. -.|++.+++|+++.+
T Consensus       174 ~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d  218 (223)
T COG2884         174 WEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRD  218 (223)
T ss_pred             HHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence            99999999886 49999999999999976 789999999999863

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.8e-42  Score=260.92  Aligned_cols=166  Identities=30%  Similarity=0.455  Sum_probs=142.4

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc-----ceEEECCEECCCC--ChhhhccCcEEEEccCC
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-----GNITISGVDLKHL--DGTWLRGNVIGLINQEP   80 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~-----G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~   80 (181)
                      .+.+|++||++|++++++|++||||||||||||++.++.....     |+|.++|+++...  +...+|++ ||+|||.|
T Consensus        19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~-vGMVFQkP   97 (253)
T COG1117          19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRR-VGMVFQKP   97 (253)
T ss_pred             chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHH-heeeccCC
Confidence            4679999999999999999999999999999999999987765     9999999999764  45677876 99999999


Q ss_pred             CCccccHHHHhhcCCCCC------CHHHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472         81 VLFATSVRENIRYGDSSV------SDEQIEEAAKLANAHG---------------------------------FISEFPS  121 (181)
Q Consensus        81 ~l~~~tv~enl~~~~~~~------~~~~~~~~~~~~~~~~---------------------------------~~~~~P~  121 (181)
                      +.|+.|++||++|+.+..      -++.++++++.+.+++                                 ++.|+|+
T Consensus        98 nPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPt  177 (253)
T COG1117          98 NPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT  177 (253)
T ss_pred             CCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcc
Confidence            999999999999984321      1234555555544443                                 4667899


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecC
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLG  174 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~  174 (181)
                      ++|||.+...+.+++.++++..|||+|||++..+.+ +|+..++..|+++|...
T Consensus       178 SALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~  231 (253)
T COG1117         178 SALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGP  231 (253)
T ss_pred             cccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcC
Confidence            999999999999999999889999999999999977 99999999999999533

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=9.3e-42  Score=301.00  Aligned_cols=169  Identities=47%  Similarity=0.752  Sum_probs=155.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      .++|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.+||.++.+.+...+|++ ||||+|++.+|.+|++
T Consensus       486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~-ig~V~Q~~~Lf~gSI~  564 (709)
T COG2274         486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ-VGYVLQDPFLFSGSIR  564 (709)
T ss_pred             cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhh-eeEEcccchhhcCcHH
Confidence            369999999999999999999999999999999999999999999999999999999999876 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      ||++++.+..+.+++.++++..++.+                                        ++.||||++||+++
T Consensus       565 eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~s  644 (709)
T COG2274         565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET  644 (709)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhH
Confidence            99999988777788888887766554                                        34567999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      ++.+.+.|.+..+|+|+|+|||+++.++.||||++|++|++++ .++++++
T Consensus       645 E~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~-~gs~~el  694 (709)
T COG2274         645 EAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVE-QGSHEEL  694 (709)
T ss_pred             HHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceec-cCCHHHH
Confidence            9999999999988999999999999999999999999999999 6777654

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-41  Score=285.35  Aligned_cols=168  Identities=42%  Similarity=0.641  Sum_probs=154.4

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE   89 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e   89 (181)
                      ++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.++.+++...||++ ++||+|+|.+|++|++|
T Consensus       335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~-i~~v~Q~p~lf~gTire  413 (559)
T COG4988         335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ-ISWVSQNPYLFAGTIRE  413 (559)
T ss_pred             cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH-eeeeCCCCccccccHHH
Confidence            79999999999999999999999999999999999999999999999999999999889876 99999999999999999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHhccccc---------------------------------------cccCCCCCCCHHHHH
Q psy10472         90 NIRYGDSSVSDEQIEEAAKLANAHGF---------------------------------------ISEFPSGALDNESEK  130 (181)
Q Consensus        90 nl~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~P~~~LD~~~~~  130 (181)
                      |+.++....+++++.++++..++.++                                       +.|+||++||.++++
T Consensus       414 Ni~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~  493 (559)
T COG4988         414 NILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQ  493 (559)
T ss_pred             HhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHH
Confidence            99999877788888888887665443                                       446699999999999


Q ss_pred             HHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        131 LVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       131 ~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      .+.+.|.+..+++|+|+|||+++.+..||+|++|++|++++ .+.++++
T Consensus       494 ~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~-~g~~~~L  541 (559)
T COG4988         494 IILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVE-QGTHEEL  541 (559)
T ss_pred             HHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceec-cCCHHHH
Confidence            99999999988999999999999999999999999999999 5665543

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=7.7e-41  Score=292.90  Aligned_cols=168  Identities=35%  Similarity=0.579  Sum_probs=152.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.++|+++.+++...+|++ |+||+|+|.+|++|++
T Consensus       363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~-i~~v~Q~~~LF~~TI~  440 (588)
T PRK11174        363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKH-LSWVGQNPQLPHGTLR  440 (588)
T ss_pred             CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhh-eEEecCCCcCCCcCHH
Confidence            56999999999999999999999999999999999999 999999999999999998888875 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      |||.++.+..++++++++++.+++.+                                        ++.|+||++||+++
T Consensus       441 eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~t  520 (588)
T PRK11174        441 DNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS  520 (588)
T ss_pred             HHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence            99999876677888888888766544                                        24466999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      ++.+.+.+++..+++|+|+|||+++.+..||+|++|++|++++ .++++++
T Consensus       521 e~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e-~G~~~eL  570 (588)
T PRK11174        521 EQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQ-QGDYAEL  570 (588)
T ss_pred             HHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEee-cCCHHHH
Confidence            9999999988878999999999999998899999999999998 5666543

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.7e-41  Score=258.19  Aligned_cols=169  Identities=37%  Similarity=0.483  Sum_probs=140.8

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCCCc
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPVLF   83 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~l~   83 (181)
                      +.+++|++|||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|.++..++..   ++|++ +||+||+++|.
T Consensus        15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~-iGmIfQ~~nLv   93 (258)
T COG3638          15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD-IGMIFQQFNLV   93 (258)
T ss_pred             CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh-ceeEeccCCcc
Confidence            457799999999999999999999999999999999999999999999999998887643   45554 99999999999


Q ss_pred             cc-cHHHHhhcCCC-----------CCCHH---HHHHHHHHhcccc-----------------------------ccccC
Q psy10472         84 AT-SVRENIRYGDS-----------SVSDE---QIEEAAKLANAHG-----------------------------FISEF  119 (181)
Q Consensus        84 ~~-tv~enl~~~~~-----------~~~~~---~~~~~~~~~~~~~-----------------------------~~~~~  119 (181)
                      +. ||.+|+..+..           ..+++   ..-++++.+++.+                             ++.|+
T Consensus        94 ~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADE  173 (258)
T COG3638          94 PRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADE  173 (258)
T ss_pred             cccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCC
Confidence            86 99999987631           12222   2334444444332                             46788


Q ss_pred             CCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        120 PSGALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       120 P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      |+++|||.+.+.+++.|++..  +|.|+|+..|+++.+.. |||++-|++|+++. +++..
T Consensus       174 PvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf-Dg~~~  233 (258)
T COG3638         174 PVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF-DGPAS  233 (258)
T ss_pred             cccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE-eCChh
Confidence            999999999999999999864  48999999999999965 99999999999998 45543

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.8e-40  Score=293.01  Aligned_cols=166  Identities=39%  Similarity=0.539  Sum_probs=149.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||+++.+++...+|++ ||||+|++.+|++|++
T Consensus       466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~-i~~v~Q~~~lf~gTI~  544 (686)
T TIGR03797       466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ-LGVVLQNGRLMSGSIF  544 (686)
T ss_pred             ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc-cEEEccCCccCcccHH
Confidence            569999999999999999999999999999999999999999999999999999998888876 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      |||.++.+ .++++++++++.+++.+                                        ++.|+||++||+.+
T Consensus       545 eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~t  623 (686)
T TIGR03797       545 ENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT  623 (686)
T ss_pred             HHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence            99999866 67888888888776544                                        24466999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      ++.+.+.++..  ++|+|+|||+++.+..||+|++|++|++++ .++++++
T Consensus       624 e~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~-~G~~~~L  671 (686)
T TIGR03797       624 QAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQ-QGTYDEL  671 (686)
T ss_pred             HHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEE-ECCHHHH
Confidence            99999999876  589999999999998899999999999998 5666543

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2.2e-40  Score=267.72  Aligned_cols=163  Identities=29%  Similarity=0.500  Sum_probs=139.8

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-S   86 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t   86 (181)
                      .+.+|++|||+|++|++++|+||||||||||+|+|+|+.+|++|+|.++|.+...- ....+++ +||+||++.+++. |
T Consensus        17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~-igy~~~~~~~~~~lT   94 (293)
T COG1131          17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRR-IGYVPQEPSLYPELT   94 (293)
T ss_pred             CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhh-eEEEccCCCCCcccc
Confidence            46799999999999999999999999999999999999999999999999987653 3445544 9999999998876 9


Q ss_pred             HHHHhhcCCCC------CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472         87 VRENIRYGDSS------VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL  131 (181)
Q Consensus        87 v~enl~~~~~~------~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~  131 (181)
                      ++||+.|....      ...++++++++.+++..                             ++.|+||++|||.++..
T Consensus        95 ~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~  174 (293)
T COG1131          95 VRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRRE  174 (293)
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHH
Confidence            99999885321      12456777887777653                             35577999999999999


Q ss_pred             HHHHHHHhc-CC-cEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        132 VQAALESAC-KG-RTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       132 i~~~l~~~~-~~-~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++++|+.++ +| +||+++||.++++.. ||+|++|++|+++..
T Consensus       175 ~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~  218 (293)
T COG1131         175 IWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE  218 (293)
T ss_pred             HHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEe
Confidence            999999875 45 899999999999977 999999999999984

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.1e-40  Score=255.57  Aligned_cols=167  Identities=31%  Similarity=0.562  Sum_probs=141.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC-CChhhhccCcEEEEccCC--CCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH-LDGTWLRGNVIGLINQEP--VLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~-~~~~~~r~~~i~~v~q~~--~l~~~   85 (181)
                      .++|+++||+|++||+++|+|+||||||||+++++|+++|++|.|.++|.++.. .+...+|++ +|||||+|  ++|..
T Consensus        17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~-vG~VfQnpd~q~~~~   95 (235)
T COG1122          17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK-VGLVFQNPDDQLFGP   95 (235)
T ss_pred             ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc-eEEEEECcccccccC
Confidence            579999999999999999999999999999999999999999999999998763 445666765 99999999  67788


Q ss_pred             cHHHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHH
Q psy10472         86 SVRENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEK  130 (181)
Q Consensus        86 tv~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~  130 (181)
                      ||.+.++|+...  ..    ++++.++++.+++.+                             ++.|+||++||+.+++
T Consensus        96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~  175 (235)
T COG1122          96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR  175 (235)
T ss_pred             cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHH
Confidence            999999998532  22    344667777776644                             3557799999999999


Q ss_pred             HHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        131 LVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       131 ~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      .+++.++++. + |+|+|++|||++.+.. ||++++|++|+++. .+.+.
T Consensus       176 ~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~-~g~p~  224 (235)
T COG1122         176 ELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA-DGDPA  224 (235)
T ss_pred             HHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEee-cCCHH
Confidence            9999999875 3 6899999999999966 99999999999987 45443

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.7e-40  Score=270.58  Aligned_cols=163  Identities=26%  Similarity=0.451  Sum_probs=137.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCcc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFA-   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~-   84 (181)
                      .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..++...   .|+ .|||+||++.+|+ 
T Consensus        18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~-~Ig~v~Q~~~l~~~   96 (343)
T TIGR02314        18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARR-QIGMIFQHFNLLSS   96 (343)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhc-CEEEEECCcccccc
Confidence            46999999999999999999999999999999999999999999999999998766443   344 4999999999997 


Q ss_pred             ccHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         85 TSVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        85 ~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                      .||+||+.++..  ...    .+++.++++.+++.+                             ++.|+||++||+.++
T Consensus        97 ~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~  176 (343)
T TIGR02314        97 RTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT  176 (343)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence            599999987532  111    234556677666543                             356779999999999


Q ss_pred             HHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        130 KLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       130 ~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ..++++|+++. + |.|||+|||+++.+.. ||++++|++|++++.
T Consensus       177 ~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~  222 (343)
T TIGR02314       177 QSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ  222 (343)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999874 3 8999999999999966 999999999999983

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=7.4e-40  Score=270.97  Aligned_cols=169  Identities=30%  Similarity=0.421  Sum_probs=141.0

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhh---ccCcEEEEccCCCCc
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL---RGNVIGLINQEPVLF   83 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~---r~~~i~~v~q~~~l~   83 (181)
                      +.+.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++...+...+   |++.++|+||++.+|
T Consensus         4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~   83 (363)
T TIGR01186         4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF   83 (363)
T ss_pred             CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence            44569999999999999999999999999999999999999999999999999988776544   234599999999999


Q ss_pred             cc-cHHHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHH
Q psy10472         84 AT-SVRENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNE  127 (181)
Q Consensus        84 ~~-tv~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~  127 (181)
                      +. ||+||+.++...  ..    .+++.++++.+++..                             ++.|+|+++||+.
T Consensus        84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~  163 (363)
T TIGR01186        84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL  163 (363)
T ss_pred             CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence            85 999999885321  11    234566677666544                             3556799999999


Q ss_pred             HHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        128 SEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       128 ~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      +++.+.+.+.++. + ++|||+||||++++.. ||+|++|++|++++ .+++
T Consensus       164 ~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~-~g~~  214 (363)
T TIGR01186       164 IRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ-VGTP  214 (363)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe-eCCH
Confidence            9999999998764 3 8999999999998855 99999999999987 3443

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=6.3e-40  Score=286.80  Aligned_cols=168  Identities=47%  Similarity=0.721  Sum_probs=149.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|+++.+++...++++ |+|+||++.+|++|++
T Consensus       356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~-i~~v~Q~~~lf~~Ti~  434 (582)
T PRK11176        356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ-VALVSQNVHLFNDTIA  434 (582)
T ss_pred             CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh-ceEEccCceeecchHH
Confidence            569999999999999999999999999999999999999999999999999999888887765 9999999999999999


Q ss_pred             HHhhcCCCC-CCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472         89 ENIRYGDSS-VSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE  127 (181)
Q Consensus        89 enl~~~~~~-~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~  127 (181)
                      |||.++... .++++++++++.+++.+                                        ++.|+||++||++
T Consensus       435 ~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~  514 (582)
T PRK11176        435 NNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE  514 (582)
T ss_pred             HHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHH
Confidence            999997543 57788888887765443                                        2446699999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472        128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      ++..+.+.+....+++|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus       515 t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e-~g~~~~  564 (582)
T PRK11176        515 SERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVE-RGTHAE  564 (582)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEE-eCCHHH
Confidence            99999999988877899999999999998899999999999998 565543

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=9.1e-40  Score=290.94  Aligned_cols=169  Identities=36%  Similarity=0.611  Sum_probs=152.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|+. |+||+|++.+|++|++
T Consensus       478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~-i~~v~Q~~~lf~~TI~  556 (694)
T TIGR03375       478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN-IGYVPQDPRLFYGTLR  556 (694)
T ss_pred             ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc-cEEECCChhhhhhhHH
Confidence            469999999999999999999999999999999999999999999999999999998888876 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      |||.++.+..+++++.++++.+++.+                                        ++.|+||++||+++
T Consensus       557 eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~t  636 (694)
T TIGR03375       557 DNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS  636 (694)
T ss_pred             HHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence            99999876667888888887765543                                        24466999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      ++.+.+.+.+..+++|+|+|||+++.+..||+|++|++|++++ .++++++
T Consensus       637 e~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e-~G~~~eL  686 (694)
T TIGR03375       637 EERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVA-DGPKDQV  686 (694)
T ss_pred             HHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEe-eCCHHHH
Confidence            9999999998877899999999999998899999999999998 5766654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=1.1e-39  Score=285.84  Aligned_cols=167  Identities=35%  Similarity=0.593  Sum_probs=150.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|++ |+||+|++.+|++|++
T Consensus       354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~-i~~v~Q~~~lF~~Ti~  432 (592)
T PRK10790        354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQG-VAMVQQDPVVLADTFL  432 (592)
T ss_pred             CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhh-eEEEccCCccccchHH
Confidence            469999999999999999999999999999999999999999999999999999988888865 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      +||.++. ..++++++++++.+++.+                                        ++.|+||++||+++
T Consensus       433 ~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t  511 (592)
T PRK10790        433 ANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT  511 (592)
T ss_pred             HHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence            9999986 466778888887766443                                        24466999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      ++.+.+.+++..+++|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus       512 ~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~-~G~~~~  560 (592)
T PRK10790        512 EQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVE-QGTHQQ  560 (592)
T ss_pred             HHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEE-EcCHHH
Confidence            9999999998877899999999999998999999999999998 566554

>KOG0058|consensus

Probab=100.00  E-value=6e-40  Score=283.05  Aligned_cols=174  Identities=53%  Similarity=0.812  Sum_probs=158.5

Q ss_pred             CccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472          4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF   83 (181)
Q Consensus         4 ~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~   83 (181)
                      |.++..+||+|+||+|+|||.+||+||||+||||+.++|..+|.|++|+|.+||+++.++++..+|++ ||+|.|+|.||
T Consensus       476 P~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~-Ig~V~QEPvLF  554 (716)
T KOG0058|consen  476 PTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK-IGLVGQEPVLF  554 (716)
T ss_pred             CCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH-eeeeeccceee
Confidence            44566789999999999999999999999999999999999999999999999999999999999865 99999999999


Q ss_pred             cccHHHHhhcCCCCCCHHHHHHHHHHhcccccc----------------------------------------ccCCCCC
Q psy10472         84 ATSVRENIRYGDSSVSDEQIEEAAKLANAHGFI----------------------------------------SEFPSGA  123 (181)
Q Consensus        84 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~P~~~  123 (181)
                      .+||+|||.|+....++++++.++++++..+|+                                        .|+.|++
T Consensus       555 s~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSA  634 (716)
T KOG0058|consen  555 SGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSA  634 (716)
T ss_pred             cccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhh
Confidence            999999999998778889999998887766653                                        3446789


Q ss_pred             CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      ||.+++..+.+.+.+..+++|||+|.|.++.++.||+|+++++|+++| .|.++++
T Consensus       635 LDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E-~G~h~eL  689 (716)
T KOG0058|consen  635 LDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVE-MGTHDEL  689 (716)
T ss_pred             cchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEe-cccHHHH
Confidence            999999999999998878899999999999999999999999999999 5766554

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=1e-39  Score=291.19  Aligned_cols=167  Identities=35%  Similarity=0.630  Sum_probs=149.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++ |+||+|++.+|++|++
T Consensus       492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~-i~~v~Q~~~lf~gTi~  570 (710)
T TIGR03796       492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS-VAMVDQDIFLFEGTVR  570 (710)
T ss_pred             CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh-eeEEecCChhhhccHH
Confidence            569999999999999999999999999999999999999999999999999999988888876 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      |||.++.+..+++++.++++.+++.+                                        ++.|+||++||+.+
T Consensus       571 eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~t  650 (710)
T TIGR03796       571 DNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET  650 (710)
T ss_pred             HHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHH
Confidence            99999865667788888887766543                                        24466999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      ++.+.+.++.  .++|+|+|||+++.+..||+|++|++|++++ .++++++
T Consensus       651 e~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~-~G~~~~L  698 (710)
T TIGR03796       651 EKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQ-RGTHEEL  698 (710)
T ss_pred             HHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEE-ecCHHHH
Confidence            9999999976  4899999999999998899999999999998 5666543

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-39  Score=268.60  Aligned_cols=165  Identities=27%  Similarity=0.450  Sum_probs=138.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +.+|+++||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|+++...++.+   +.||||||++.+|+. ||
T Consensus        17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~---r~ig~v~Q~~~lfp~~tv   93 (356)
T PRK11650         17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPAD---RDIAMVFQNYALYPHMSV   93 (356)
T ss_pred             CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHH---CCEEEEeCCccccCCCCH
Confidence            56999999999999999999999999999999999999999999999999997765432   349999999999975 99


Q ss_pred             HHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +||+.|+...  ..    .+++.++++.+++..                             ++.|+|+++||+.+++.+
T Consensus        94 ~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l  173 (356)
T PRK11650         94 RENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQM  173 (356)
T ss_pred             HHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence            9999987431  12    234566777666544                             355779999999999999


Q ss_pred             HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      .+.++++. + |.|+|+||||++++.. ||++++|++|++++ .++++
T Consensus       174 ~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~-~g~~~  220 (356)
T PRK11650        174 RLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ-IGTPV  220 (356)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-ECCHH
Confidence            99998864 3 8999999999998865 99999999999987 44443

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=2.2e-39  Score=254.28  Aligned_cols=163  Identities=32%  Similarity=0.488  Sum_probs=135.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---hhhccCcEEEEccCCCCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWLRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~~i~~v~q~~~l~~~   85 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.   ..+++ .++|+||++.+|+.
T Consensus        13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~-~i~~v~q~~~~~~~   91 (235)
T cd03261          13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR-RMGMLFQSGALFDS   91 (235)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc-ceEEEccCcccCCC
Confidence            569999999999999999999999999999999999999999999999999876543   23444 49999999998875


Q ss_pred             -cHHHHhhcCCC---CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472         86 -SVRENIRYGDS---SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES  128 (181)
Q Consensus        86 -tv~enl~~~~~---~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~  128 (181)
                       |+.||+.++..   ...    .+++.++++.+++..                             ++.|+||++||+.+
T Consensus        92 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~  171 (235)
T cd03261          92 LTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA  171 (235)
T ss_pred             CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence             99999987521   112    223455566555433                             35577999999999


Q ss_pred             HHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        129 EKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       129 ~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++.+++.++++.  .++|||+||||++++.. ||++++|++|++++.
T Consensus       172 ~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~  218 (235)
T cd03261         172 SGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAE  218 (235)
T ss_pred             HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEe
Confidence            999999998864  38999999999998865 999999999999873

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-39  Score=253.49  Aligned_cols=157  Identities=26%  Similarity=0.438  Sum_probs=132.3

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC---CCcccc
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP---VLFATS   86 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~---~l~~~t   86 (181)
                      ++|+||||+|++|++++|+||||||||||+|+|+|+++|.+|+|.++|++......   + .+||||||..   +-||.|
T Consensus        18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~-~~IgYVPQ~~~~d~~fP~t   93 (254)
T COG1121          18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---R-LRIGYVPQKSSVDRSFPIT   93 (254)
T ss_pred             eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---C-CeEEEcCcccccCCCCCcC
Confidence            69999999999999999999999999999999999999999999999987654321   2 3499999965   347889


Q ss_pred             HHHHhhcCCCC----------CCHHHHHHHHHHhccccc-----------------------------cccCCCCCCCHH
Q psy10472         87 VRENIRYGDSS----------VSDEQIEEAAKLANAHGF-----------------------------ISEFPSGALDNE  127 (181)
Q Consensus        87 v~enl~~~~~~----------~~~~~~~~~~~~~~~~~~-----------------------------~~~~P~~~LD~~  127 (181)
                      |+|-+.++...          .+++.+.++++.+++.++                             +.|+|++++|+.
T Consensus        94 V~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~  173 (254)
T COG1121          94 VKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA  173 (254)
T ss_pred             HHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHH
Confidence            99999987321          134678888888876653                             557799999999


Q ss_pred             HHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        128 SEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       128 ~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      ++..++++|++++ +|+||++||||++.+.. ||+|+.|++. ++.
T Consensus       174 ~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~-~~~  218 (254)
T COG1121         174 GQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH-LIA  218 (254)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCe-eEe
Confidence            9999999999875 49999999999999855 9999999765 444

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.7e-40  Score=275.85  Aligned_cols=168  Identities=38%  Similarity=0.624  Sum_probs=154.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      .++|+|+||++++||.+||+|+||||||||+.+|.|.++|++|+|.++|.++..++...+|.. +++++|.+.+|.+|++
T Consensus       351 ~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~-i~vl~Qr~hlF~~Tlr  429 (573)
T COG4987         351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRET-ISVLTQRVHLFSGTLR  429 (573)
T ss_pred             cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHH-HhhhccchHHHHHHHH
Confidence            469999999999999999999999999999999999999999999999999999988777765 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      +|+.++.+..++++++++++.+++.+                                        ++.|+||.+||+.+
T Consensus       430 ~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~T  509 (573)
T COG4987         430 DNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPIT  509 (573)
T ss_pred             HHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhh
Confidence            99999988888999999998877654                                        35567999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      ++++++.+....+|+|+|+|||++..++.||||++|++|++++ .+.+.+
T Consensus       510 E~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie-~G~~~~  558 (573)
T COG4987         510 ERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIE-EGTHAE  558 (573)
T ss_pred             HHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeee-cCCHHh
Confidence            9999999988888999999999999999999999999999999 565544

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=1.2e-39  Score=284.31  Aligned_cols=170  Identities=53%  Similarity=0.823  Sum_probs=153.6

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV   87 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv   87 (181)
                      .+++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||+++.+.+...+|++ |+||||++.+|++||
T Consensus       341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~-I~~V~Qd~~LF~~TI  419 (567)
T COG1132         341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKR-IGIVSQDPLLFSGTI  419 (567)
T ss_pred             CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHh-ccEEcccceeecccH
Confidence            3579999999999999999999999999999999999999999999999999999999998876 999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHhccccc----------------------------------------cccCCCCCCCHH
Q psy10472         88 RENIRYGDSSVSDEQIEEAAKLANAHGF----------------------------------------ISEFPSGALDNE  127 (181)
Q Consensus        88 ~enl~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~P~~~LD~~  127 (181)
                      +|||.++.+..++++++++++.+++.++                                        +.|+||++||++
T Consensus       420 ~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~  499 (567)
T COG1132         420 RENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTE  499 (567)
T ss_pred             HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHH
Confidence            9999999876778888888887654442                                        445689999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      +++.+.+.+....+++|+|+|+|+++.+..||+|++|++|++++ .++++++
T Consensus       500 tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e-~G~h~eL  550 (567)
T COG1132         500 TEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVE-RGTHEEL  550 (567)
T ss_pred             hHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence            99999999987767889999999999998999999999999998 5766554

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=1.9e-39  Score=263.94  Aligned_cols=166  Identities=21%  Similarity=0.384  Sum_probs=136.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...++ .+||+||++.+++. |+
T Consensus        20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~-~ig~v~q~~~~~~~~tv   97 (306)
T PRK13537         20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQ-RVGVVPQFDNLDPDFTV   97 (306)
T ss_pred             eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHh-cEEEEeccCcCCCCCcH
Confidence            56999999999999999999999999999999999999999999999999986543 33444 49999999999874 99


Q ss_pred             HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +||+.+...  ...    .+++.++++.+++..                             ++.|+||++||+.+++.+
T Consensus        98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l  177 (306)
T PRK13537         98 RENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM  177 (306)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHH
Confidence            999986321  111    223455666555433                             356779999999999999


Q ss_pred             HHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        133 QAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       133 ~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      +++++++. +|+|||++||+++++.. ||||++|++|+++. .++.+
T Consensus       178 ~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~-~g~~~  223 (306)
T PRK13537        178 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIA-EGAPH  223 (306)
T ss_pred             HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-ECCHH
Confidence            99999875 58999999999999966 99999999999987 34443

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.4e-39  Score=267.66  Aligned_cols=165  Identities=28%  Similarity=0.480  Sum_probs=138.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...++.  ++ .+||+||++.+|+. ||
T Consensus        17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r-~ig~v~Q~~~lfp~~tv   93 (353)
T TIGR03265        17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KR-DYGIVFQSYALFPNLTV   93 (353)
T ss_pred             eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HC-CEEEEeCCcccCCCCcH
Confidence            4589999999999999999999999999999999999999999999999998766543  33 49999999999985 99


Q ss_pred             HHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +||+.|+...  ..    .+++.++++.+++..                             ++.|+|+++||+..+..+
T Consensus        94 ~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l  173 (353)
T TIGR03265        94 ADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHL  173 (353)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence            9999987321  11    345667777776554                             345679999999999999


Q ss_pred             HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      .+.|+++. + +.|+|+||||++++.. ||++++|++|++++ .++++
T Consensus       174 ~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~-~g~~~  220 (353)
T TIGR03265       174 RTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQ-VGTPQ  220 (353)
T ss_pred             HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHH
Confidence            99998864 3 8999999999999865 99999999999987 45443

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>KOG0055|consensus

Probab=100.00  E-value=1.2e-39  Score=294.30  Aligned_cols=174  Identities=55%  Similarity=0.876  Sum_probs=157.8

Q ss_pred             CccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472          4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF   83 (181)
Q Consensus         4 ~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~   83 (181)
                      |.++..++|+++||.|++|+.++|+|||||||||++++|.++|.|++|+|++||.++..++..++|.+ ||+|+|+|.||
T Consensus       361 PsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~-iglV~QePvlF  439 (1228)
T KOG0055|consen  361 PSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ-IGLVSQEPVLF  439 (1228)
T ss_pred             CCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh-cCeeeechhhh
Confidence            34455679999999999999999999999999999999999999999999999999999999988875 99999999999


Q ss_pred             cccHHHHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCC
Q psy10472         84 ATSVRENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGA  123 (181)
Q Consensus        84 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~  123 (181)
                      ..||+|||.|+.+..+.+++++++++++..+                                        ++.|+||++
T Consensus       440 ~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSa  519 (1228)
T KOG0055|consen  440 ATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSA  519 (1228)
T ss_pred             cccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccc
Confidence            9999999999987778888888887665443                                        355779999


Q ss_pred             CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      ||+++++.+.+.|.+..+|+|.|+|+|+++.++.||++++|++|+|+| .+.++++
T Consensus       520 LD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE-~G~h~EL  574 (1228)
T KOG0055|consen  520 LDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVE-QGTHDEL  574 (1228)
T ss_pred             cCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEE-ecCHHHH
Confidence            999999999999999989999999999999999999999999999999 5766654

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=5.1e-39  Score=252.20  Aligned_cols=168  Identities=25%  Similarity=0.416  Sum_probs=137.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.....+..++|+||++.+|+. |+
T Consensus        13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv   92 (236)
T cd03219          13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTV   92 (236)
T ss_pred             EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCH
Confidence            46999999999999999999999999999999999999999999999999987665444333359999999998876 99


Q ss_pred             HHHhhcCCCCC-------------C---HHHHHHHHHHhcccc-----------------------------ccccCCCC
Q psy10472         88 RENIRYGDSSV-------------S---DEQIEEAAKLANAHG-----------------------------FISEFPSG  122 (181)
Q Consensus        88 ~enl~~~~~~~-------------~---~~~~~~~~~~~~~~~-----------------------------~~~~~P~~  122 (181)
                      +||+.++....             .   .+.+.++++.+++..                             ++.|+||+
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~  172 (236)
T cd03219          93 LENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAA  172 (236)
T ss_pred             HHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            99998752110             1   223455566555433                             35577999


Q ss_pred             CCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        123 ALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       123 ~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      +||+.+++.+++.++++. +|+|+|++|||++.+.. ||++++|++|++++ .++.+
T Consensus       173 ~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~  228 (236)
T cd03219         173 GLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA-EGTPD  228 (236)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe-ecCHH
Confidence            999999999999998865 68999999999999866 99999999999987 34433

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>KOG0057|consensus

Probab=100.00  E-value=3.1e-39  Score=271.20  Aligned_cols=169  Identities=43%  Similarity=0.696  Sum_probs=153.8

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV   87 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv   87 (181)
                      .+++|+++||+|++||.+||+|+|||||||++|+|.+++. ++|+|.+||+++...+...+|+. ||||||+..||+.||
T Consensus       364 k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~-Ig~VPQd~~LFndTI  441 (591)
T KOG0057|consen  364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQS-IGVVPQDSVLFNDTI  441 (591)
T ss_pred             CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhh-eeEeCCcccccchhH
Confidence            3569999999999999999999999999999999999999 99999999999999998888876 999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472         88 RENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE  127 (181)
Q Consensus        88 ~enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~  127 (181)
                      .+||.+|....+.+++.++++.+++.+                                        ++.|+||++||.+
T Consensus       442 l~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~  521 (591)
T KOG0057|consen  442 LYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSE  521 (591)
T ss_pred             HHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchh
Confidence            999999988888888888888776554                                        3456799999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      +++.+++.+.....++|+|+|-|++..+..||+|+++++|++.+ .+++.++
T Consensus       522 TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e-~gth~el  572 (591)
T KOG0057|consen  522 TEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKE-YGTHSEL  572 (591)
T ss_pred             hHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEE-eccHHHH
Confidence            99999999988777999999999999999999999999999998 5665543

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.2e-39  Score=265.91  Aligned_cols=165  Identities=27%  Similarity=0.482  Sum_probs=138.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      ..+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...+..  + +.+||+||++.+|+. ||
T Consensus        19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~-r~ig~vfQ~~~lfp~~tv   95 (351)
T PRK11432         19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--Q-RDICMVFQSYALFPHMSL   95 (351)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--H-CCEEEEeCCcccCCCCCH
Confidence            4689999999999999999999999999999999999999999999999999766533  2 349999999999985 99


Q ss_pred             HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +||+.|+..  ...    .++++++++.+++..                             ++.|+|+++||+..++.+
T Consensus        96 ~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l  175 (351)
T PRK11432         96 GENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSM  175 (351)
T ss_pred             HHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence            999998742  111    234566776666544                             345679999999999999


Q ss_pred             HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      .+.|+++. + |.|+|+||||++++.. ||+|++|++|++++ .++++
T Consensus       176 ~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~-~g~~~  222 (351)
T PRK11432        176 REKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ-IGSPQ  222 (351)
T ss_pred             HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHH
Confidence            99998864 3 8999999999999855 99999999999987 45443

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=4e-39  Score=261.65  Aligned_cols=166  Identities=21%  Similarity=0.374  Sum_probs=137.0

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-S   86 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t   86 (181)
                      .+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ...+++ .+||+||++.+++. |
T Consensus         5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~-~i~~~~q~~~~~~~~t   82 (302)
T TIGR01188         5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE-PRKVRR-SIGIVPQYASVDEDLT   82 (302)
T ss_pred             CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-HHHHHh-hcEEecCCCCCCCCCc
Confidence            35699999999999999999999999999999999999999999999999988653 334444 49999999998875 9


Q ss_pred             HHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472         87 VRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL  131 (181)
Q Consensus        87 v~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~  131 (181)
                      ++||+.+...  ...    .+++.++++.+++..                             ++.|+||++||+.+++.
T Consensus        83 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~  162 (302)
T TIGR01188        83 GRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRA  162 (302)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence            9999986421  111    234556666665533                             35677999999999999


Q ss_pred             HHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        132 VQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       132 i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++++++++. +|+|||++||+++++.. ||++++|++|+++. .++.
T Consensus       163 l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~-~g~~  208 (302)
T TIGR01188       163 IWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIA-EGTP  208 (302)
T ss_pred             HHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-ECCH
Confidence            999998874 58999999999999976 99999999999987 3443

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.8e-40  Score=253.93  Aligned_cols=173  Identities=27%  Similarity=0.412  Sum_probs=144.7

Q ss_pred             cccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc
Q psy10472          6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         6 ~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~   85 (181)
                      ++.-.+++||||++++||+++|+||||||||||+++|+|+++|++|+|.++|++++.+++.+..+..|+.-||.+.+|+.
T Consensus        14 FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~   93 (250)
T COG0411          14 FGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPG   93 (250)
T ss_pred             cCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCC
Confidence            34457999999999999999999999999999999999999999999999999999999887766779999999999986


Q ss_pred             -cHHHHhhcCCC------------CC---C---HHHHHHHHHHhcccc-----------------------------ccc
Q psy10472         86 -SVRENIRYGDS------------SV---S---DEQIEEAAKLANAHG-----------------------------FIS  117 (181)
Q Consensus        86 -tv~enl~~~~~------------~~---~---~~~~~~~~~~~~~~~-----------------------------~~~  117 (181)
                       ||.||+..+..            ..   .   .++..++++.+++.+                             ++.
T Consensus        94 lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLL  173 (250)
T COG0411          94 LTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLL  173 (250)
T ss_pred             CcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEe
Confidence             99999987521            01   1   122334455555433                             356


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchhh
Q psy10472        118 EFPSGALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       118 ~~P~~~LD~~~~~~i~~~l~~~~~--~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      |+|.++|.+.....+.+.|+++.+  |.||++|.||+..+.. ||||++|+.|+++. .+++++.
T Consensus       174 DEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA-eG~P~eV  237 (250)
T COG0411         174 DEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA-EGTPEEV  237 (250)
T ss_pred             cCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc-cCCHHHH
Confidence            779999999999999999998763  6999999999999865 99999999999998 5665543

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=2.7e-39  Score=288.44  Aligned_cols=168  Identities=37%  Similarity=0.593  Sum_probs=149.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++ |+||+|++.+|++|++
T Consensus       487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~-i~~v~Q~~~lf~gTI~  565 (708)
T TIGR01193       487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQF-INYLPQEPYIFSGSIL  565 (708)
T ss_pred             CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHh-eEEEecCceehhHHHH
Confidence            569999999999999999999999999999999999999999999999999999998888876 9999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472         89 ENIRYGD-SSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE  127 (181)
Q Consensus        89 enl~~~~-~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~  127 (181)
                      |||.++. +..+++++.++++.+++.+                                        ++.|+||++||++
T Consensus       566 eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~  645 (708)
T TIGR01193       566 ENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTI  645 (708)
T ss_pred             HHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence            9999983 4566777788877665443                                        2456699999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      +++.+.+.++.. +++|+|+|||+++.+..||+|++|++|++++ .++++++
T Consensus       646 te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~-~G~~~~L  695 (708)
T TIGR01193       646 TEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIE-QGSHDEL  695 (708)
T ss_pred             HHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEE-ECCHHHH
Confidence            999999999875 5799999999999998899999999999998 5666543

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=6.1e-39  Score=281.03  Aligned_cols=168  Identities=43%  Similarity=0.676  Sum_probs=148.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++...+|++ |+|+||++.+|++|++
T Consensus       348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~Ti~  426 (588)
T PRK13657        348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN-IAVVFQDAGLFNRSIE  426 (588)
T ss_pred             CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhh-eEEEecCcccccccHH
Confidence            458999999999999999999999999999999999999999999999999999988888876 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      ||+.++.+..++++++.+++.+++.+                                        ++.|+||++||+.+
T Consensus       427 ~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t  506 (588)
T PRK13657        427 DNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET  506 (588)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence            99999865566777777776655432                                        24466999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      ++.+++.+....+++|+|+|||+++.++.||+|++|++|++++ .+++++
T Consensus       507 ~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~-~g~~~~  555 (588)
T PRK13657        507 EAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVE-SGSFDE  555 (588)
T ss_pred             HHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEE-eCCHHH
Confidence            9999999988767899999999999998899999999999998 455443

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=4.4e-39  Score=287.10  Aligned_cols=167  Identities=47%  Similarity=0.730  Sum_probs=147.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||+++.+++...+|++ |+||+|+|.+|++|++
T Consensus       494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~-i~~v~Q~~~lF~gTIr  572 (711)
T TIGR00958       494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ-VALVGQEPVLFSGSVR  572 (711)
T ss_pred             CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh-ceEEecCccccccCHH
Confidence            469999999999999999999999999999999999999999999999999999888888876 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      |||.++.+..+++++.++++.+++.+                                        ++.|+||++||+++
T Consensus       573 eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~t  652 (711)
T TIGR00958       573 ENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC  652 (711)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHH
Confidence            99999866666778888887765543                                        24466999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      ++.+.+ . ...+++|+|+|||+++.+..||+|++|++|++++ .++++++
T Consensus       653 e~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive-~Gt~~eL  700 (711)
T TIGR00958       653 EQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVE-MGTHKQL  700 (711)
T ss_pred             HHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEE-eeCHHHH
Confidence            999988 2 2346899999999999998899999999999998 5666544

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=6.8e-39  Score=280.01  Aligned_cols=169  Identities=34%  Similarity=0.576  Sum_probs=151.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+++...+|+. |+|++|++.+|++|++
T Consensus       353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~ti~  431 (574)
T PRK11160        353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA-ISVVSQRVHLFSATLR  431 (574)
T ss_pred             CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh-eeEEcccchhhcccHH
Confidence            469999999999999999999999999999999999999999999999999999988888865 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhccccc---------------------------------------cccCCCCCCCHHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHGF---------------------------------------ISEFPSGALDNESE  129 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~P~~~LD~~~~  129 (181)
                      ||+.++.+..+++++.++++.+++.++                                       +.|+||++||++++
T Consensus       432 ~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~  511 (574)
T PRK11160        432 DNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE  511 (574)
T ss_pred             HHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            999998766677888888887766543                                       33559999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        130 KLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       130 ~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      +.+.+.+.+..+++|+|+|||+++.+..||+|++|++|++++ .++++++
T Consensus       512 ~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~-~g~~~~l  560 (574)
T PRK11160        512 RQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIE-QGTHQEL  560 (574)
T ss_pred             HHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEE-eCCHHHH
Confidence            999999998877999999999999998899999999999998 5665543

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=8.9e-39  Score=248.61  Aligned_cols=168  Identities=24%  Similarity=0.369  Sum_probs=135.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....+++.++|+||++.+|+. |+
T Consensus        13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~   92 (222)
T cd03224          13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV   92 (222)
T ss_pred             eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence            46999999999999999999999999999999999999999999999999987665444333459999999998886 99


Q ss_pred             HHHhhcCCCCC----CHHHHHHHHHHh-cccc-----------------------------ccccCCCCCCCHHHHHHHH
Q psy10472         88 RENIRYGDSSV----SDEQIEEAAKLA-NAHG-----------------------------FISEFPSGALDNESEKLVQ  133 (181)
Q Consensus        88 ~enl~~~~~~~----~~~~~~~~~~~~-~~~~-----------------------------~~~~~P~~~LD~~~~~~i~  133 (181)
                      +||+.++....    ..+.+.++++.+ ++..                             ++.|+|+++||+.+++.++
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~  172 (222)
T cd03224          93 EENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF  172 (222)
T ss_pred             HHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH
Confidence            99998753211    122233344433 1211                             3567899999999999999


Q ss_pred             HHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        134 AALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       134 ~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      ++++++. +++|+|++||+++.+.. ||++++|++|++++ .++.+
T Consensus       173 ~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~  217 (222)
T cd03224         173 EAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVL-EGTAA  217 (222)
T ss_pred             HHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE-eCCHH
Confidence            9998865 58999999999998865 99999999999987 34443

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.9e-39  Score=247.67  Aligned_cols=164  Identities=30%  Similarity=0.375  Sum_probs=136.1

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--Cccc-c
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFAT-S   86 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~~-t   86 (181)
                      +++++|||+|.+||+++|+|+||||||||.++|+|+.+|++|+|.++|+++........+.+.|.+|||+|.  +-|. |
T Consensus        21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t  100 (252)
T COG1124          21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT  100 (252)
T ss_pred             hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence            599999999999999999999999999999999999999999999999887654433334445999999994  3354 8


Q ss_pred             HHHHhhcCCCC----CCHHHHHHHHHHhcccc------------------------------ccccCCCCCCCHHHHHHH
Q psy10472         87 VRENIRYGDSS----VSDEQIEEAAKLANAHG------------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        87 v~enl~~~~~~----~~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      |.+-|.-+...    ...+++.++++.+++..                              ++.|+|+++||...+.++
T Consensus       101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I  180 (252)
T COG1124         101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI  180 (252)
T ss_pred             HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence            98888765322    22445677777666543                              467889999999999999


Q ss_pred             HHHHHHhcC--CcEEEEEecCchhhhc-CCeEEEEeCCeEEeec
Q psy10472        133 QAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEML  173 (181)
Q Consensus       133 ~~~l~~~~~--~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~  173 (181)
                      ++++.++++  +.|+|+||||+..+.. ||||++|++|+++|..
T Consensus       181 lnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~  224 (252)
T COG1124         181 LNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIG  224 (252)
T ss_pred             HHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEee
Confidence            999988753  7899999999999987 9999999999999853

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=1.1e-38  Score=249.71  Aligned_cols=163  Identities=22%  Similarity=0.350  Sum_probs=134.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.....++.++|+||++.+|+. |+
T Consensus        13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   92 (232)
T cd03218          13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTV   92 (232)
T ss_pred             EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcH
Confidence            46999999999999999999999999999999999999999999999999886655433333359999999998886 99


Q ss_pred             HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +||+.++..  ...    .+++.++++.+++..                             ++.|+||++||+.+++.+
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~  172 (232)
T cd03218          93 EENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI  172 (232)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence            999986421  111    123445555554432                             356789999999999999


Q ss_pred             HHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        133 QAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       133 ~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      .++++++. +++|+|++||+++.+.. ||++++|++|+++.
T Consensus       173 ~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~  213 (232)
T cd03218         173 QKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA  213 (232)
T ss_pred             HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence            99998865 58999999999998865 99999999999986

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=4.5e-39  Score=249.54  Aligned_cols=160  Identities=29%  Similarity=0.517  Sum_probs=132.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCCCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~l~~~   85 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..   .+++ .++|+||++.+|+.
T Consensus        16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~   94 (216)
T TIGR00960        16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR-HIGMVFQDHRLLSD   94 (216)
T ss_pred             eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH-hceEEecCcccccc
Confidence            3599999999999999999999999999999999999999999999999988654432   2344 49999999988875


Q ss_pred             -cHHHHhhcCCC--CC----CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         86 -SVRENIRYGDS--SV----SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        86 -tv~enl~~~~~--~~----~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                       |+.||+.++..  ..    ..+++.++++.+++..                             ++.|+||++||+.++
T Consensus        95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~  174 (216)
T TIGR00960        95 RTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELS  174 (216)
T ss_pred             ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence             99999987421  11    1234556666655433                             356779999999999


Q ss_pred             HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeE
Q psy10472        130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI  169 (181)
Q Consensus       130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i  169 (181)
                      +.+.+.++++. ++.|||+||||++.+.. ||++++|++|++
T Consensus       175 ~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       175 RDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999998864 48999999999999865 999999999974

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=1.2e-38  Score=264.95  Aligned_cols=164  Identities=27%  Similarity=0.447  Sum_probs=137.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...++..   +.+||+||++.+|+. ||
T Consensus        27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~---r~ig~vfQ~~~lfp~ltv  103 (375)
T PRK09452         27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAEN---RHVNTVFQSYALFPHMTV  103 (375)
T ss_pred             eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH---CCEEEEecCcccCCCCCH
Confidence            46899999999999999999999999999999999999999999999999987665432   349999999999976 99


Q ss_pred             HHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +||+.|+...  ..    .+++.++++.+++..                             ++.|+|+++||+..++.+
T Consensus       104 ~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l  183 (375)
T PRK09452        104 FENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQM  183 (375)
T ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence            9999987421  12    234556666666544                             355679999999999999


Q ss_pred             HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      .+.|+++. + |.|+|+||||++++.. ||++++|++|++++. +++
T Consensus       184 ~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~-g~~  229 (375)
T PRK09452        184 QNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD-GTP  229 (375)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCH
Confidence            99998864 3 8999999999999865 999999999999874 443

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=2.8e-38  Score=248.23  Aligned_cols=163  Identities=46%  Similarity=0.721  Sum_probs=133.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++ .++|+||++.+|+.|+.
T Consensus        15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~tv~   93 (237)
T cd03252          15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR-QVGVVLQENVLFNRSIR   93 (237)
T ss_pred             ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh-cEEEEcCCchhccchHH
Confidence            46999999999999999999999999999999999999999999999999886655555554 49999999988888999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHH---------h--c-----------------------------cccccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKL---------A--N-----------------------------AHGFISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~---------~--~-----------------------------~~~~~~~~P~~~LD~~~  128 (181)
                      ||+.++........+..+++.         +  +                             ..-++.|+|+++||+.+
T Consensus        94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~  173 (237)
T cd03252          94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES  173 (237)
T ss_pred             HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence            999885432222222222111         1  0                             01135677999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      ++.+.+.|+++.+|+|||++||+++.+..||++++|++|++++.
T Consensus       174 ~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~  217 (237)
T cd03252         174 EHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQ  217 (237)
T ss_pred             HHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence            99999999987678999999999999867999999999999873

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=9.1e-39  Score=264.19  Aligned_cols=164  Identities=27%  Similarity=0.476  Sum_probs=137.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+..  ++ .++|+||++.+|+. ||
T Consensus        15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~--~r-~i~~v~Q~~~l~p~~tv   91 (353)
T PRK10851         15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR--DR-KVGFVFQHYALFRHMTV   91 (353)
T ss_pred             eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHH--HC-CEEEEecCcccCCCCcH
Confidence            4689999999999999999999999999999999999999999999999998765432  23 49999999999985 99


Q ss_pred             HHHhhcCCCC------CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472         88 RENIRYGDSS------VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES  128 (181)
Q Consensus        88 ~enl~~~~~~------~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~  128 (181)
                      .||+.|+...      ..    .+++.++++.+++..                             ++.|+|+++||+.+
T Consensus        92 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~  171 (353)
T PRK10851         92 FDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQV  171 (353)
T ss_pred             HHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence            9999986321      12    234556677666543                             35577999999999


Q ss_pred             HHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        129 EKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       129 ~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++.+.+.|+++. + +.|+|+||||++++.. ||+|++|++|++++ .+++
T Consensus       172 r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~-~g~~  221 (353)
T PRK10851        172 RKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ-AGTP  221 (353)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCH
Confidence            999999998864 3 8999999999999866 99999999999987 3443

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=1.4e-38  Score=266.38  Aligned_cols=168  Identities=20%  Similarity=0.360  Sum_probs=141.6

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc-ccc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF-ATS   86 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~-~~t   86 (181)
                      .+++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+...++++ +||++|++.++ ..|
T Consensus        15 ~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~-ig~v~q~~~l~~~~t   93 (402)
T PRK09536         15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR-VASVPQDTSLSFEFD   93 (402)
T ss_pred             CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcc-eEEEccCCCCCCCCC
Confidence            3579999999999999999999999999999999999999999999999999987776666654 99999999875 469


Q ss_pred             HHHHhhcCCCC----------CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHH
Q psy10472         87 VRENIRYGDSS----------VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNE  127 (181)
Q Consensus        87 v~enl~~~~~~----------~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~  127 (181)
                      ++||+.++...          ...++++++++.+++..                             ++.|+||++||+.
T Consensus        94 v~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~  173 (402)
T PRK09536         94 VRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDIN  173 (402)
T ss_pred             HHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence            99999876321          11334667777766644                             3556799999999


Q ss_pred             HHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        128 SEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       128 ~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      ++..++++|+++. ++.|||++|||++.+.. |||+++|++|+++. .++++
T Consensus       174 ~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~-~G~~~  224 (402)
T PRK09536        174 HQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA-AGPPA  224 (402)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ecCHH
Confidence            9999999999875 58999999999999965 99999999999987 45443

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=2.3e-38  Score=249.48  Aligned_cols=164  Identities=23%  Similarity=0.386  Sum_probs=136.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....+++.++|+||++.+|+. |+
T Consensus        15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   94 (242)
T TIGR03411        15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTV   94 (242)
T ss_pred             eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCH
Confidence            46999999999999999999999999999999999999999999999999887655443333459999999999986 99


Q ss_pred             HHHhhcCCCC----------C----CHHHHHHHHHHhcccc-----------------------------ccccCCCCCC
Q psy10472         88 RENIRYGDSS----------V----SDEQIEEAAKLANAHG-----------------------------FISEFPSGAL  124 (181)
Q Consensus        88 ~enl~~~~~~----------~----~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~L  124 (181)
                      .||+.++...          .    ..+++.++++.+++..                             ++.|+||++|
T Consensus        95 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~L  174 (242)
T TIGR03411        95 FENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM  174 (242)
T ss_pred             HHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCC
Confidence            9999875210          0    1234456666655433                             3557799999


Q ss_pred             CHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        125 DNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       125 D~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      |+.++..++++++++.++.|+|++||+++.+.. ||++++|++|++++.
T Consensus       175 D~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~  223 (242)
T TIGR03411       175 TDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE  223 (242)
T ss_pred             CHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence            999999999999987667999999999999965 999999999999873

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=1.4e-38  Score=247.24  Aligned_cols=166  Identities=22%  Similarity=0.418  Sum_probs=136.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..+++ .++|+||++.+++ .|+
T Consensus        15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~-~i~~v~q~~~~~~~~tv   92 (220)
T cd03263          15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQ-SLGYCPQFDALFDELTV   92 (220)
T ss_pred             ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhh-hEEEecCcCCccccCCH
Confidence            56999999999999999999999999999999999999999999999999876532 33444 4999999999886 599


Q ss_pred             HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      ++|+.++..  ...    .+++.++++.+++..                             ++.|+|+++||+.+++.+
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l  172 (220)
T cd03263          93 REHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI  172 (220)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHH
Confidence            999986421  111    123455565555432                             356789999999999999


Q ss_pred             HHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        133 QAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       133 ~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      .+.|+++.++.|+|++||+++.+.. ||++++|++|++++ .++.+
T Consensus       173 ~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~  217 (220)
T cd03263         173 WDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRC-IGSPQ  217 (220)
T ss_pred             HHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe-cCCHH
Confidence            9999987667999999999999865 99999999999987 45444

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=1.5e-38  Score=244.87  Aligned_cols=158  Identities=30%  Similarity=0.476  Sum_probs=131.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--Ccccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFATS   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~~t   86 (181)
                      +++|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++..   ...++ .++|+||++.  +++.|
T Consensus        13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~-~i~~~~q~~~~~~~~~t   88 (205)
T cd03226          13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRK-SIGYVMQDVDYQLFTDS   88 (205)
T ss_pred             CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhc-ceEEEecChhhhhhhcc
Confidence            569999999999999999999999999999999999999999999999998753   23333 4999999974  45679


Q ss_pred             HHHHhhcCCCC--CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472         87 VRENIRYGDSS--VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAA  135 (181)
Q Consensus        87 v~enl~~~~~~--~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~  135 (181)
                      +.||+.++...  ...+++.++++.+++..                             ++.|+|+++||+.+++.+.+.
T Consensus        89 v~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~  168 (205)
T cd03226          89 VREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGEL  168 (205)
T ss_pred             HHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHH
Confidence            99999875321  22345667777666543                             355779999999999999999


Q ss_pred             HHHh-cCCcEEEEEecCchhhhc-CCeEEEEeCCeEE
Q psy10472        136 LESA-CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV  170 (181)
Q Consensus       136 l~~~-~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~  170 (181)
                      ++++ .++.|+|++||+++.+.. ||++++|++|+++
T Consensus       169 l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         169 IRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            9887 458999999999999865 9999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=1e-38  Score=262.74  Aligned_cols=166  Identities=26%  Similarity=0.413  Sum_probs=135.9

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-S   86 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t   86 (181)
                      .+.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.... ...++ .+||+||++.+++. |
T Consensus        53 ~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~-~ig~v~q~~~~~~~~t  130 (340)
T PRK13536         53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARA-RIGVVPQFDNLDLEFT  130 (340)
T ss_pred             CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhc-cEEEEeCCccCCCCCc
Confidence            346999999999999999999999999999999999999999999999999986543 33444 49999999998864 9


Q ss_pred             HHHHhhcCC--CCCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472         87 VRENIRYGD--SSVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL  131 (181)
Q Consensus        87 v~enl~~~~--~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~  131 (181)
                      +.||+.+..  ....    .+.+.++++.+++..                             ++.|+||++||+.++..
T Consensus       131 v~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~  210 (340)
T PRK13536        131 VRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL  210 (340)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH
Confidence            999998531  1111    123445566555443                             35677999999999999


Q ss_pred             HHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        132 VQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       132 i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++++|+++. +|+|||++||+++++.. ||+|++|++|+++.. ++.
T Consensus       211 l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~-g~~  256 (340)
T PRK13536        211 IWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE-GRP  256 (340)
T ss_pred             HHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-cCH
Confidence            999998874 58999999999999966 999999999999873 443

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=1.2e-38  Score=247.26  Aligned_cols=161  Identities=31%  Similarity=0.454  Sum_probs=132.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCCCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~l~~~   85 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..   .++++.++|+||++.+|+.
T Consensus        17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   96 (218)
T cd03255          17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD   96 (218)
T ss_pred             eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence            4699999999999999999999999999999999999999999999999988765432   2233359999999998875


Q ss_pred             -cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         86 -SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        86 -tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                       |++||+.++..  ...    .+.+.++++.+++..                             ++.|+|+++||+.++
T Consensus        97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~  176 (218)
T cd03255          97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG  176 (218)
T ss_pred             CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence             99999987531  111    234556666665433                             356779999999999


Q ss_pred             HHHHHHHHHhc--CCcEEEEEecCchhhhcCCeEEEEeCCeE
Q psy10472        130 KLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQI  169 (181)
Q Consensus       130 ~~i~~~l~~~~--~~~tii~vtHd~~~~~~~d~v~~l~~G~i  169 (181)
                      +.+.++++++.  +++|||++||+++.+..||++++|++|++
T Consensus       177 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i  218 (218)
T cd03255         177 KEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI  218 (218)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence            99999998864  38999999999998877999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-38  Score=253.64  Aligned_cols=163  Identities=27%  Similarity=0.553  Sum_probs=135.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC--CCcccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP--VLFATS   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~--~l~~~t   86 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++  .++..|
T Consensus        18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~~~t   96 (274)
T PRK13647         18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRS-KVGLVFQDPDDQVFSST   96 (274)
T ss_pred             CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHh-hEEEEecChhhhhccCc
Confidence            46999999999999999999999999999999999999999999999999987655555554 499999997  456679


Q ss_pred             HHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472         87 VRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL  131 (181)
Q Consensus        87 v~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~  131 (181)
                      +.+|+.|+..  ...    .+++.++++.+++..                             ++.|+|+++||+.++..
T Consensus        97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~  176 (274)
T PRK13647         97 VWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET  176 (274)
T ss_pred             HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHH
Confidence            9999987532  111    234456666655533                             35577999999999999


Q ss_pred             HHHHHHHhc-CCcEEEEEecCchhhh-cCCeEEEEeCCeEEee
Q psy10472        132 VQAALESAC-KGRTVLMIAHRLSTVQ-NADLIVVLQAGQIVEM  172 (181)
Q Consensus       132 i~~~l~~~~-~~~tii~vtHd~~~~~-~~d~v~~l~~G~i~~~  172 (181)
                      ++++++++. +|.|||++|||++.+. .||++++|++|++++.
T Consensus       177 l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~  219 (274)
T PRK13647        177 LMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAE  219 (274)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            999998874 4899999999999985 4999999999999873

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=1.7e-38  Score=248.00  Aligned_cols=166  Identities=33%  Similarity=0.525  Sum_probs=135.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC-----CCCcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY-----DVSSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~-----~p~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|++     +|++|+|.++|+++...+  ...+++ .++|+||++.
T Consensus        13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~   91 (227)
T cd03260          13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRR-RVGMVFQKPN   91 (227)
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHh-hEEEEecCch
Confidence            56999999999999999999999999999999999999     999999999999886654  333444 4999999998


Q ss_pred             CccccHHHHhhcCCCC---CC----HHHHHHHHHHhcccc-------------------------------ccccCCCCC
Q psy10472         82 LFATSVRENIRYGDSS---VS----DEQIEEAAKLANAHG-------------------------------FISEFPSGA  123 (181)
Q Consensus        82 l~~~tv~enl~~~~~~---~~----~~~~~~~~~~~~~~~-------------------------------~~~~~P~~~  123 (181)
                      +|+.|++||+.++...   ..    .+++.++++.+++..                               ++.|+||++
T Consensus        92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~  171 (227)
T cd03260          92 PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA  171 (227)
T ss_pred             hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            8866999999875211   11    234455566554422                               244669999


Q ss_pred             CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      ||+.+++.+.+.|+++.+..|+|++|||++.+.. ||++++|++|++++ .+++
T Consensus       172 LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~  224 (227)
T cd03260         172 LDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVE-FGPT  224 (227)
T ss_pred             CCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEE-ecCc
Confidence            9999999999999987544999999999999865 99999999999987 3443

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=1.3e-38  Score=277.91  Aligned_cols=168  Identities=46%  Similarity=0.705  Sum_probs=149.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.+++...++++ ++|+||+|.+|++|++
T Consensus       345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~-i~~v~Q~~~lf~~Ti~  423 (571)
T TIGR02203       345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ-VALVSQDVVLFNDTIA  423 (571)
T ss_pred             CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh-ceEEccCcccccccHH
Confidence            468999999999999999999999999999999999999999999999999998888777765 9999999999999999


Q ss_pred             HHhhcCCC-CCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472         89 ENIRYGDS-SVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE  127 (181)
Q Consensus        89 enl~~~~~-~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~  127 (181)
                      |||.++.. ..++++++++++.+++.+                                        ++.|+||++||+.
T Consensus       424 ~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~  503 (571)
T TIGR02203       424 NNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE  503 (571)
T ss_pred             HHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence            99999864 567788888887765433                                        2446699999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472        128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      +++.+++.|.+..+++|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus       504 ~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~-~g~~~~  553 (571)
T TIGR02203       504 SERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVE-RGTHNE  553 (571)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEe-eCCHHH
Confidence            99999999988877899999999999988899999999999988 455443

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-38  Score=255.45  Aligned_cols=163  Identities=26%  Similarity=0.505  Sum_probs=135.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC--hhhhccCcEEEEccCC--CCcc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD--GTWLRGNVIGLINQEP--VLFA   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~--~l~~   84 (181)
                      +++|++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+  ....++ .+||+||++  .+|+
T Consensus        20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~-~ig~v~q~~~~~~~~   98 (287)
T PRK13637         20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRK-KVGLVFQYPEYQLFE   98 (287)
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhh-ceEEEecCchhcccc
Confidence            46999999999999999999999999999999999999999999999999987543  223444 499999997  4567


Q ss_pred             ccHHHHhhcCCC--CCC----HHHHHHHHHHhccc--c-----------------------------ccccCCCCCCCHH
Q psy10472         85 TSVRENIRYGDS--SVS----DEQIEEAAKLANAH--G-----------------------------FISEFPSGALDNE  127 (181)
Q Consensus        85 ~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~--~-----------------------------~~~~~P~~~LD~~  127 (181)
                      .||+||+.++..  ...    .+++.++++.+++.  .                             ++.|+||++||+.
T Consensus        99 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~  178 (287)
T PRK13637         99 ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK  178 (287)
T ss_pred             ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHH
Confidence            799999987531  112    23456677777764  2                             2456699999999


Q ss_pred             HHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        128 SEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       128 ~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++..++++++++. + |.|||++|||++++.. ||||++|++|++++.
T Consensus       179 ~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~  226 (287)
T PRK13637        179 GRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQ  226 (287)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999998864 3 8999999999999854 999999999999873

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=1.5e-38  Score=277.82  Aligned_cols=167  Identities=53%  Similarity=0.799  Sum_probs=148.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++. ++|+||++.+|++|++
T Consensus       353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~-i~~~~Q~~~lf~~Ti~  431 (576)
T TIGR02204       353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR-MALVPQDPVLFAASVM  431 (576)
T ss_pred             CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh-ceEEccCCccccccHH
Confidence            469999999999999999999999999999999999999999999999999998888887765 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      ||+.++.+..++++++++++.+++.+                                        ++.|+||++||+.+
T Consensus       432 ~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~  511 (576)
T TIGR02204       432 ENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES  511 (576)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHH
Confidence            99999865556777777777655432                                        24466999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCch
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~  177 (181)
                      ++.+++.++...+++|+|+|||+++.+..||+|++|++|++++ .++++
T Consensus       512 ~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~-~g~~~  559 (576)
T TIGR02204       512 EQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVA-QGTHA  559 (576)
T ss_pred             HHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEe-eecHH
Confidence            9999999988777899999999999998899999999999998 45543

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=4.7e-38  Score=246.45  Aligned_cols=165  Identities=52%  Similarity=0.753  Sum_probs=134.6

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE   89 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e   89 (181)
                      ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.+|+.|++|
T Consensus        16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~tv~e   94 (234)
T cd03251          16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR-QIGLVSQDVFLFNDTVAE   94 (234)
T ss_pred             cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh-hEEEeCCCCeeccccHHH
Confidence            6899999999999999999999999999999999999999999999999886655445554 499999999988889999


Q ss_pred             HhhcCCCCCCHHHHHHH---------HHHh--cc-----------------------------ccccccCCCCCCCHHHH
Q psy10472         90 NIRYGDSSVSDEQIEEA---------AKLA--NA-----------------------------HGFISEFPSGALDNESE  129 (181)
Q Consensus        90 nl~~~~~~~~~~~~~~~---------~~~~--~~-----------------------------~~~~~~~P~~~LD~~~~  129 (181)
                      |+.++..........+.         ++.+  ++                             .-++.|+|+++||+.++
T Consensus        95 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~  174 (234)
T cd03251          95 NIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESE  174 (234)
T ss_pred             HhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence            99886432222222221         1111  11                             11356779999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472        130 KLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       130 ~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~  176 (181)
                      +.+.+.|+++.++.|||++||+++.+..||++++|++|++++ .++.
T Consensus       175 ~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~-~~~~  220 (234)
T cd03251         175 RLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVE-RGTH  220 (234)
T ss_pred             HHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEee-eCCH
Confidence            999999998767899999999999987799999999999987 3443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=2e-38  Score=257.40  Aligned_cols=166  Identities=20%  Similarity=0.402  Sum_probs=137.8

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-S   86 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t   86 (181)
                      .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ....++ .+||+||++.+++. |
T Consensus        14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~-~~~~~~-~ig~~~q~~~l~~~~t   91 (301)
T TIGR03522        14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN-PKEVQR-NIGYLPEHNPLYLDMY   91 (301)
T ss_pred             CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-hHHHHh-ceEEecCCCCCCCCCc
Confidence            35699999999999999999999999999999999999999999999999988653 334444 49999999999876 9


Q ss_pred             HHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472         87 VRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL  131 (181)
Q Consensus        87 v~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~  131 (181)
                      +.||+.+...  ...    .++++++++.+++..                             ++.|+|+++||+.+++.
T Consensus        92 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~  171 (301)
T TIGR03522        92 VREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVE  171 (301)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence            9999976321  111    234566666666543                             35677999999999999


Q ss_pred             HHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        132 VQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       132 i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      +++.++.+++++|||++||+++++.. |||+++|++|+++. .++.
T Consensus       172 l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~-~g~~  216 (301)
T TIGR03522       172 IRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVA-DKKL  216 (301)
T ss_pred             HHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eCCH
Confidence            99999988768999999999999866 99999999999987 4443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=1.9e-38  Score=262.87  Aligned_cols=165  Identities=26%  Similarity=0.461  Sum_probs=137.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc--ceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS--GNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~--G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +.+|+++||+|++||+++|+|||||||||||++|+|+++|++  |+|.++|+++...+..  + +.++|+||++.+|+. 
T Consensus        18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~--~-r~ig~vfQ~~~l~p~~   94 (362)
T TIGR03258        18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH--K-RGLALLFQNYALFPHL   94 (362)
T ss_pred             eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--H-CCEEEEECCcccCCCC
Confidence            468999999999999999999999999999999999999999  9999999998765542  2 349999999999986 


Q ss_pred             cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHH
Q psy10472         86 SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEK  130 (181)
Q Consensus        86 tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~  130 (181)
                      ||+||+.|+..  ...    .+++.++++.+++..                             ++.|+|+++||+..+.
T Consensus        95 tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~  174 (362)
T TIGR03258        95 KVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRA  174 (362)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence            99999998632  112    234566777766544                             3556799999999999


Q ss_pred             HHHHHHHHhc-C--CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        131 LVQAALESAC-K--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       131 ~i~~~l~~~~-~--~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      .+.+.|+++. +  |.|+|+||||++++.. ||+|++|++|+++. .++++
T Consensus       175 ~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~-~g~~~  224 (362)
T TIGR03258       175 NMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA-HGEPQ  224 (362)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHH
Confidence            9999998764 3  7899999999999865 99999999999987 45443

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.1e-38  Score=232.74  Aligned_cols=168  Identities=28%  Similarity=0.399  Sum_probs=140.7

Q ss_pred             CccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---hhhccCcEEEEccCC
Q psy10472          4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWLRGNVIGLINQEP   80 (181)
Q Consensus         4 ~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~~i~~v~q~~   80 (181)
                      .....-.+|++|+|.|++||.++|+|||||||||||-+++|+..|++|+|.+.|+++.+++.   ..+|.+.+|+|||.+
T Consensus        18 ~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF   97 (228)
T COG4181          18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF   97 (228)
T ss_pred             CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence            34445679999999999999999999999999999999999999999999999999988874   356777899999999


Q ss_pred             CCccc-cHHHHhhcCCC------CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCC
Q psy10472         81 VLFAT-SVRENIRYGDS------SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGAL  124 (181)
Q Consensus        81 ~l~~~-tv~enl~~~~~------~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~L  124 (181)
                      .+++. |..||++.+..      ........+.++.+++..                             ++.++||++|
T Consensus        98 ~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNL  177 (228)
T COG4181          98 HLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNL  177 (228)
T ss_pred             eccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCc
Confidence            99875 99999988631      111223444555544322                             4678899999


Q ss_pred             CHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472        125 DNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVE  171 (181)
Q Consensus       125 D~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~  171 (181)
                      |..+-.++.+++-.+.  .|.|+|+||||+..+.+|+|++.|.+|++++
T Consensus       178 D~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~  226 (228)
T COG4181         178 DRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE  226 (228)
T ss_pred             chhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence            9999999999987653  4999999999999999999999999999976

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=2.4e-38  Score=248.98  Aligned_cols=166  Identities=34%  Similarity=0.467  Sum_probs=135.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---hhhccCcEEEEccCCCCcc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWLRGNVIGLINQEPVLFA-   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~~i~~v~q~~~l~~-   84 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.   ..+++ .++|+||++.+|+ 
T Consensus        14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~   92 (241)
T cd03256          14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR-QIGMIFQQFNLIER   92 (241)
T ss_pred             cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh-ccEEEcccCccccc
Confidence            469999999999999999999999999999999999999999999999998876542   23444 4999999998887 


Q ss_pred             ccHHHHhhcCCCC-----------C---CHHHHHHHHHHhcccc-----------------------------ccccCCC
Q psy10472         85 TSVRENIRYGDSS-----------V---SDEQIEEAAKLANAHG-----------------------------FISEFPS  121 (181)
Q Consensus        85 ~tv~enl~~~~~~-----------~---~~~~~~~~~~~~~~~~-----------------------------~~~~~P~  121 (181)
                      .|+.+|+.++...           .   ..+++.++++.+++..                             ++.|+||
T Consensus        93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt  172 (241)
T cd03256          93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV  172 (241)
T ss_pred             CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence            5999999864210           1   1223445565555432                             3557799


Q ss_pred             CCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        122 GALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++||+.+++.+.+.|+++.  .|+|||++|||++.+.. ||++++|++|++++. ++.
T Consensus       173 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~-~~~  229 (241)
T cd03256         173 ASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD-GPP  229 (241)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee-cCH
Confidence            9999999999999998864  38999999999999975 999999999999873 443

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.1e-38  Score=260.38  Aligned_cols=163  Identities=27%  Similarity=0.458  Sum_probs=135.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCcc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFA-   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~-   84 (181)
                      +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...   +++ .++|+||++.+|+ 
T Consensus        18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~-~ig~v~q~~~l~~~   96 (343)
T PRK11153         18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARR-QIGMIFQHFNLLSS   96 (343)
T ss_pred             eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhc-CEEEEeCCCccCCC
Confidence            46999999999999999999999999999999999999999999999999987765432   244 4999999999887 


Q ss_pred             ccHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         85 TSVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        85 ~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                      .|+.||+.++..  ...    .+++.++++.+++..                             ++.|+||++||+.++
T Consensus        97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~  176 (343)
T PRK11153         97 RTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT  176 (343)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence            599999987521  111    233455666655533                             355779999999999


Q ss_pred             HHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        130 KLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       130 ~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ..++++|+++. + |+|+|++||+++.+.. ||++++|++|++++.
T Consensus       177 ~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~  222 (343)
T PRK11153        177 RSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ  222 (343)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999998864 3 8999999999999866 999999999999873

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.7e-38  Score=254.45  Aligned_cols=166  Identities=23%  Similarity=0.462  Sum_probs=135.7

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC----ChhhhccCcEEEEccCC--CCc
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL----DGTWLRGNVIGLINQEP--VLF   83 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~----~~~~~r~~~i~~v~q~~--~l~   83 (181)
                      .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...    ....+++ .+||+||++  .+|
T Consensus        20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~-~ig~v~q~~~~~l~   98 (288)
T PRK13643         20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRK-KVGVVFQFPESQLF   98 (288)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHh-hEEEEecCcchhcc
Confidence            599999999999999999999999999999999999999999999999998532    2233454 499999997  677


Q ss_pred             cccHHHHhhcCCCC--CC----HHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCHH
Q psy10472         84 ATSVRENIRYGDSS--VS----DEQIEEAAKLANAH-G-----------------------------FISEFPSGALDNE  127 (181)
Q Consensus        84 ~~tv~enl~~~~~~--~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~~  127 (181)
                      +.|+.||+.|+...  ..    ..++.++++.+++. .                             ++.|+||++||+.
T Consensus        99 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~  178 (288)
T PRK13643         99 EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK  178 (288)
T ss_pred             cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence            78999999986321  11    22345666666653 2                             2456799999999


Q ss_pred             HHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        128 SEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       128 ~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      ++..+.++++++. +|.|||++|||++++.. ||+|++|++|++++ .++++
T Consensus       179 ~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~-~g~~~  229 (288)
T PRK13643        179 ARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIIS-CGTPS  229 (288)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHH
Confidence            9999999998865 58999999999998855 99999999999987 35443

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.1e-38  Score=253.15  Aligned_cols=163  Identities=28%  Similarity=0.453  Sum_probs=135.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-Cc-ccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-LF-ATS   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~-~~t   86 (181)
                      +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++. ++ ..|
T Consensus        20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~-~i~~v~q~~~~~~~~~t   98 (279)
T PRK13650         20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRH-KIGMVFQNPDNQFVGAT   98 (279)
T ss_pred             CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHh-hceEEEcChHHhccccc
Confidence            35999999999999999999999999999999999999999999999999987655555554 4999999983 44 569


Q ss_pred             HHHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472         87 VRENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL  131 (181)
Q Consensus        87 v~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~  131 (181)
                      |.||+.++...  ..    .+++.++++.+++..                             ++.|+||++||+.+++.
T Consensus        99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~  178 (279)
T PRK13650         99 VEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLE  178 (279)
T ss_pred             HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence            99999886321  12    234566666666543                             35577999999999999


Q ss_pred             HHHHHHHhc-C-CcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        132 VQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       132 i~~~l~~~~-~-~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      +.++++++. + |+|||++||+++.+..||++++|++|+++..
T Consensus       179 l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~  221 (279)
T PRK13650        179 LIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVEST  221 (279)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence            999998864 3 8999999999999866999999999999873

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=3.2e-38  Score=245.47  Aligned_cols=165  Identities=22%  Similarity=0.374  Sum_probs=135.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++ .++|+||++.+++. |+
T Consensus        13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~~-~i~~~~q~~~~~~~~tv   90 (220)
T cd03265          13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-REVRR-RIGIVFQDLSVDDELTG   90 (220)
T ss_pred             EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcCh-HHHhh-cEEEecCCccccccCcH
Confidence            56999999999999999999999999999999999999999999999999876432 33444 49999999988875 99


Q ss_pred             HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      ++|+.++..  ...    .+++.++++.+++..                             ++.|+||++||+.+++.+
T Consensus        91 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l  170 (220)
T cd03265          91 WENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV  170 (220)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence            999976421  111    234456666665433                             355779999999999999


Q ss_pred             HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      .+.++++. + ++|+|++||+++.+.. ||++++|++|++++ .++.
T Consensus       171 ~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~  216 (220)
T cd03265         171 WEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA-EGTP  216 (220)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-eCCh
Confidence            99998864 4 8999999999999865 99999999999987 3443

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.7e-38  Score=246.07  Aligned_cols=164  Identities=24%  Similarity=0.379  Sum_probs=135.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~~   85 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+...   .+++.++|+||++.+|+.
T Consensus        22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~  101 (233)
T PRK11629         22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD  101 (233)
T ss_pred             eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence            46999999999999999999999999999999999999999999999999987765432   232359999999988875


Q ss_pred             -cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         86 -SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        86 -tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                       |++||+.++..  ...    .+++.++++.+++..                             ++.|+||++||+.++
T Consensus       102 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~  181 (233)
T PRK11629        102 FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA  181 (233)
T ss_pred             CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence             99999986321  111    234556666665533                             355779999999999


Q ss_pred             HHHHHHHHHhc--CCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        130 KLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       130 ~~i~~~l~~~~--~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      +.+.++++++.  +|+|||++||+++.+..+|++++|++|++++.
T Consensus       182 ~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~  226 (233)
T PRK11629        182 DSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAE  226 (233)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEE
Confidence            99999998863  48999999999999887789999999999874

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=6.7e-38  Score=244.84  Aligned_cols=166  Identities=48%  Similarity=0.764  Sum_probs=135.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +.+++++||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.++...+...+++ .++|+||++.+|+.|+.
T Consensus        16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~tv~   94 (229)
T cd03254          16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS-MIGVVLQDTFLFSGTIM   94 (229)
T ss_pred             CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhh-hEEEecCCchhhhhHHH
Confidence            35999999999999999999999999999999999999999999999999887655545554 49999999998888999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcc----------------------------------------ccccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANA----------------------------------------HGFISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~P~~~LD~~~  128 (181)
                      ||+.++.......++.++++.+++                                        .-++.|+|+++||+.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~  174 (229)
T cd03254          95 ENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET  174 (229)
T ss_pred             HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            999886433333333332222111                                        1135677999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++.+++.++.+.+++|||++||+++.+..||++++|++|++++ .++.
T Consensus       175 ~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~-~~~~  221 (229)
T cd03254         175 EKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIE-EGTH  221 (229)
T ss_pred             HHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEE-eCCH
Confidence            9999999988767899999999999987799999999999987 3443

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=3.8e-38  Score=275.11  Aligned_cols=168  Identities=34%  Similarity=0.598  Sum_probs=147.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|+. ++|++|++.+|++|++
T Consensus       328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~-i~~v~q~~~lf~~ti~  406 (569)
T PRK10789        328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR-LAVVSQTPFLFSDTVA  406 (569)
T ss_pred             CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhh-eEEEccCCeeccccHH
Confidence            469999999999999999999999999999999999999999999999999988887777765 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      ||+.++.+..++++++++++.+++.+                                        ++.|+||++||+++
T Consensus       407 ~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~  486 (569)
T PRK10789        407 NNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT  486 (569)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHH
Confidence            99999865566677777766554322                                        24466999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      ++.+.+.++...+++|+|+|||+++.+..||++++|++|++++ .+++++
T Consensus       487 ~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~-~g~~~~  535 (569)
T PRK10789        487 EHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQ-RGNHDQ  535 (569)
T ss_pred             HHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEE-ecCHHH
Confidence            9999999988777899999999999988899999999999998 455443

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.6e-38  Score=248.41  Aligned_cols=166  Identities=36%  Similarity=0.483  Sum_probs=134.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCCCcc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPVLFA-   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~l~~-   84 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..   .+++ .++|+||++.+|+ 
T Consensus        15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~i~~v~q~~~~~~~   93 (243)
T TIGR02315        15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR-RIGMIFQHYNLIER   93 (243)
T ss_pred             cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh-heEEEcCCCccccc
Confidence            5699999999999999999999999999999999999999999999999988665432   2343 5999999998887 


Q ss_pred             ccHHHHhhcCCCC-----------C---CHHHHHHHHHHhcccc-----------------------------ccccCCC
Q psy10472         85 TSVRENIRYGDSS-----------V---SDEQIEEAAKLANAHG-----------------------------FISEFPS  121 (181)
Q Consensus        85 ~tv~enl~~~~~~-----------~---~~~~~~~~~~~~~~~~-----------------------------~~~~~P~  121 (181)
                      .|+.||+.++...           .   ..+++.++++.+++..                             ++.|+||
T Consensus        94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  173 (243)
T TIGR02315        94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI  173 (243)
T ss_pred             ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            4999999865211           0   1223455555555432                             3557799


Q ss_pred             CCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        122 GALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++||+.+++.+.++|+++. + ++|+|++||+++.+.. ||++++|++|++++ .++.
T Consensus       174 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~  230 (243)
T TIGR02315       174 ASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF-DGAP  230 (243)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe-cCCH
Confidence            9999999999999998863 3 8999999999999865 99999999999987 4443

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=5.1e-38  Score=247.19  Aligned_cols=161  Identities=28%  Similarity=0.433  Sum_probs=132.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.  .+ +.++|++|++.+|+. |+
T Consensus        15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~-~~i~~v~q~~~~~~~~tv   91 (239)
T cd03296          15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QE-RNVGFVFQHYALFRHMTV   91 (239)
T ss_pred             EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cc-cceEEEecCCcccCCCCH
Confidence            569999999999999999999999999999999999999999999999998765432  23 349999999988864 99


Q ss_pred             HHHhhcCCCC--C----C----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472         88 RENIRYGDSS--V----S----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES  128 (181)
Q Consensus        88 ~enl~~~~~~--~----~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~  128 (181)
                      .||+.++...  .    .    .+.+.++++.+++..                             ++.|+|+++||+.+
T Consensus        92 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~  171 (239)
T cd03296          92 FDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV  171 (239)
T ss_pred             HHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence            9999875311  1    1    123445565555432                             35677999999999


Q ss_pred             HHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        129 EKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       129 ~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++.+.+++.++. + |+|||++||+++.+.. ||++++|++|++++.
T Consensus       172 ~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~  218 (239)
T cd03296         172 RKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV  218 (239)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence            999999998864 3 8999999999998865 999999999999873

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=6.7e-38  Score=246.22  Aligned_cols=163  Identities=59%  Similarity=0.899  Sum_probs=132.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....++ .++|+||++.+++.|++
T Consensus        16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~tv~   94 (238)
T cd03249          16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS-QIGLVSQEPVLFDGTIA   94 (238)
T ss_pred             ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHh-hEEEECCchhhhhhhHH
Confidence            45999999999999999999999999999999999999999999999999886555444444 49999999988878999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhc----------------------------------------cccccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLAN----------------------------------------AHGFISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~P~~~LD~~~  128 (181)
                      ||+.++......+.....++..+                                        ..-++.|+|+++||+.+
T Consensus        95 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~  174 (238)
T cd03249          95 ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES  174 (238)
T ss_pred             HHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            99988643222222222111110                                        11145677999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      ++.+.+.|+.+.+|+|+|++||+++.+..||++++|++|++++.
T Consensus       175 ~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~  218 (238)
T cd03249         175 EKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQ  218 (238)
T ss_pred             HHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEe
Confidence            99999999887678999999999999877999999999999873

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=3.6e-38  Score=243.98  Aligned_cols=160  Identities=30%  Similarity=0.471  Sum_probs=132.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.  .++ .++|+||++.+++ .|+
T Consensus        13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~-~i~~v~q~~~~~~~~tv   89 (213)
T cd03259          13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERR-NIGMVFQDYALFPHLTV   89 (213)
T ss_pred             eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhc-cEEEEcCchhhccCCcH
Confidence            569999999999999999999999999999999999999999999999998865432  233 4999999998886 499


Q ss_pred             HHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +||+.++...  ..    .+++.++++.+++..                             ++.|+||++||+.+++.+
T Consensus        90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l  169 (213)
T cd03259          90 AENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL  169 (213)
T ss_pred             HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence            9999875211  11    223455566555432                             356779999999999999


Q ss_pred             HHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        133 QAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       133 ~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      +++++++.  .|+|||++|||++++.. ||++++|++|++++
T Consensus       170 ~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~  211 (213)
T cd03259         170 REELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ  211 (213)
T ss_pred             HHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence            99998864  38999999999998865 99999999999876

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.6e-38  Score=247.36  Aligned_cols=163  Identities=33%  Similarity=0.547  Sum_probs=136.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++ .++|+||++.+|+.|+.
T Consensus        16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~-~i~~~~q~~~~~~~tv~   94 (241)
T PRK14250         16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRR-KIGMVFQQPHLFEGTVK   94 (241)
T ss_pred             eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhh-cEEEEecCchhchhhHH
Confidence            46899999999999999999999999999999999999999999999999987655445554 49999999998888999


Q ss_pred             HHhhcCCCC--CCHHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472         89 ENIRYGDSS--VSDEQIEEAAKLANAH-G-----------------------------FISEFPSGALDNESEKLVQAAL  136 (181)
Q Consensus        89 enl~~~~~~--~~~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~~~~~~i~~~l  136 (181)
                      ||+.++...  ....++.++++.+++. .                             ++.|+|+++||+.+++.+.+.|
T Consensus        95 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  174 (241)
T PRK14250         95 DNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI  174 (241)
T ss_pred             HHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            999875321  1233455566666553 2                             3557799999999999999999


Q ss_pred             HHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        137 ESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       137 ~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +.+.  .|.|||++|||++.+.. ||++++|++|++++.
T Consensus       175 ~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  213 (241)
T PRK14250        175 VKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEY  213 (241)
T ss_pred             HHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence            8864  38999999999999865 999999999999873

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=3.1e-38  Score=243.50  Aligned_cols=161  Identities=27%  Similarity=0.443  Sum_probs=134.0

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-cc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TS   86 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~t   86 (181)
                      .+++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++...  ...++ .++|+||++.+++ .|
T Consensus        12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~-~i~~~~q~~~~~~~~t   88 (208)
T cd03268          12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALR-RIGALIEAPGFYPNLT   88 (208)
T ss_pred             CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHh-hEEEecCCCccCccCc
Confidence            35699999999999999999999999999999999999999999999999887543  23343 4999999998886 59


Q ss_pred             HHHHhhcCCC--CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472         87 VRENIRYGDS--SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAA  135 (181)
Q Consensus        87 v~enl~~~~~--~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~  135 (181)
                      +.||+.++..  ....+++.++++.+++..                             ++.|+||++||+.+++.+.++
T Consensus        89 v~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  168 (208)
T cd03268          89 ARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELREL  168 (208)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHH
Confidence            9999977521  123445566666555432                             356789999999999999999


Q ss_pred             HHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        136 LESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       136 l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      ++++. +++|+|++|||++.+.. ||++++|++|++++
T Consensus       169 l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~  206 (208)
T cd03268         169 ILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE  206 (208)
T ss_pred             HHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence            98865 58999999999999865 99999999999876

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=3.6e-38  Score=280.74  Aligned_cols=168  Identities=46%  Similarity=0.745  Sum_probs=149.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+++||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|+. ++||+|++.+|++|++
T Consensus       470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~-i~~v~q~~~lf~~ti~  548 (694)
T TIGR01846       470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ-MGVVLQENVLFSRSIR  548 (694)
T ss_pred             ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh-CeEEccCCeehhhhHH
Confidence            459999999999999999999999999999999999999999999999999999988888875 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      ||+.++.+..+.+++.++++.+++.+                                        ++.|+||++||+.+
T Consensus       549 eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~  628 (694)
T TIGR01846       549 DNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES  628 (694)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence            99999865566777777777655433                                        24566999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      ++.+.+.+++..+++|+|++||+++.+..||+|++|++|++++ .+++++
T Consensus       629 ~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~-~g~~~~  677 (694)
T TIGR01846       629 EALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAE-SGRHEE  677 (694)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEE-eCCHHH
Confidence            9999999998877899999999999998899999999999998 565544

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-38  Score=261.85  Aligned_cols=164  Identities=28%  Similarity=0.486  Sum_probs=136.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...+..  ++ .++|+||++.+|+. ||
T Consensus        16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~-~i~~v~Q~~~l~~~~tv   92 (369)
T PRK11000         16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ER-GVGMVFQSYALYPHLSV   92 (369)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HC-CEEEEeCCcccCCCCCH
Confidence            4689999999999999999999999999999999999999999999999998765432  23 49999999999975 99


Q ss_pred             HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +||+.|+..  ...    .+++.++++.+++..                             ++.|+|+++||+.+++.+
T Consensus        93 ~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l  172 (369)
T PRK11000         93 AENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM  172 (369)
T ss_pred             HHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence            999998632  111    234566666666543                             355779999999999999


Q ss_pred             HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      .+.|+++. + +.|+|+||||++++.. ||++++|++|++++ .+++
T Consensus       173 ~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~-~g~~  218 (369)
T PRK11000        173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKP  218 (369)
T ss_pred             HHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCH
Confidence            99998864 3 8999999999998865 99999999999987 3443

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.4e-38  Score=261.95  Aligned_cols=165  Identities=28%  Similarity=0.486  Sum_probs=136.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      ..+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...++.  ++ .+||+||++.+|+. ||
T Consensus        32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~--~r-~ig~vfQ~~~lfp~ltv  108 (377)
T PRK11607         32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY--QR-PINMMFQSYALFPHMTV  108 (377)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HC-CEEEEeCCCccCCCCCH
Confidence            4689999999999999999999999999999999999999999999999998765532  33 49999999999986 99


Q ss_pred             HHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      .||+.|+...  ..    .+++.++++.+++..                             ++.|+|+++||+..++.+
T Consensus       109 ~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l  188 (377)
T PRK11607        109 EQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRM  188 (377)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence            9999987321  12    234556666666543                             355779999999999999


Q ss_pred             HHHHHHh-c-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        133 QAALESA-C-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       133 ~~~l~~~-~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      .+.++++ + .|.|+|+||||++++.. ||++++|++|++++ .++++
T Consensus       189 ~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~-~g~~~  235 (377)
T PRK11607        189 QLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ-IGEPE  235 (377)
T ss_pred             HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEE-EcCHH
Confidence            9888775 3 38999999999999865 99999999999987 45443

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.8e-38  Score=263.59  Aligned_cols=163  Identities=28%  Similarity=0.438  Sum_probs=136.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~~   85 (181)
                      ..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+...   .+++.++|+||++.+|+.
T Consensus        41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~  120 (400)
T PRK10070         41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPH  120 (400)
T ss_pred             eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCC
Confidence            45899999999999999999999999999999999999999999999999987765433   233459999999999975


Q ss_pred             -cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         86 -SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        86 -tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                       |+.||+.++..  ...    .+++.++++.+++..                             ++.|+||++||+.++
T Consensus       121 ~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r  200 (400)
T PRK10070        121 MTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR  200 (400)
T ss_pred             CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence             99999987531  111    234556666666543                             355779999999999


Q ss_pred             HHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        130 KLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       130 ~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      +.+.+.|.++.  .++|||+||||++++.. ||++++|++|+++.
T Consensus       201 ~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~  245 (400)
T PRK10070        201 TEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ  245 (400)
T ss_pred             HHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEe
Confidence            99999998864  48999999999999865 99999999999987

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=5e-38  Score=243.89  Aligned_cols=160  Identities=21%  Similarity=0.413  Sum_probs=133.1

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVR   88 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~   88 (181)
                      ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...+++ .++|+||++.+|+. |+.
T Consensus        19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~-~i~~~~q~~~~~~~~tv~   96 (218)
T cd03266          19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE-PAEARR-RLGFVSDSTGLYDRLTAR   96 (218)
T ss_pred             eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC-HHHHHh-hEEEecCCcccCcCCCHH
Confidence            699999999999999999999999999999999999999999999999988642 334444 49999999998885 999


Q ss_pred             HHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHH
Q psy10472         89 ENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQ  133 (181)
Q Consensus        89 enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~  133 (181)
                      ||+.+...  ...    .+++.++++.+++..                             ++.|+|+++||+.+++.+.
T Consensus        97 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~  176 (218)
T cd03266          97 ENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR  176 (218)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHH
Confidence            99976421  111    233455666555432                             3567899999999999999


Q ss_pred             HHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        134 AALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       134 ~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      +.++++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       177 ~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~  216 (218)
T cd03266         177 EFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY  216 (218)
T ss_pred             HHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence            9998864 58999999999998865 99999999999876

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=6.4e-38  Score=245.62  Aligned_cols=165  Identities=32%  Similarity=0.509  Sum_probs=135.0

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCcc-c
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFA-T   85 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~-~   85 (181)
                      ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...   .++ .++|+||++.+|+ .
T Consensus        19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~~   97 (233)
T cd03258          19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARR-RIGMIFQHFNLLSSR   97 (233)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh-heEEEccCcccCCCC
Confidence            7999999999999999999999999999999999999999999999999987654322   233 4999999999987 4


Q ss_pred             cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHH
Q psy10472         86 SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEK  130 (181)
Q Consensus        86 tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~  130 (181)
                      |+.||+.++..  ...    .+.+.++++.+++..                             ++.|+|+++||+.++.
T Consensus        98 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~  177 (233)
T cd03258          98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ  177 (233)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHH
Confidence            99999986421  111    223455565555432                             3567799999999999


Q ss_pred             HHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        131 LVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       131 ~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      .+.+.++++. + |+|||++||+++.+.. ||++++|++|++++. ++.
T Consensus       178 ~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~  225 (233)
T cd03258         178 SILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE-GTV  225 (233)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-cCH
Confidence            9999998864 3 8999999999999865 999999999999873 443

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.2e-38  Score=254.43  Aligned_cols=165  Identities=22%  Similarity=0.412  Sum_probs=133.9

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC------------------------Ch
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL------------------------DG   65 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~------------------------~~   65 (181)
                      ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...                        ..
T Consensus        21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (305)
T PRK13651         21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI  100 (305)
T ss_pred             cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence            599999999999999999999999999999999999999999999998765211                        12


Q ss_pred             hhhccCcEEEEccCC--CCccccHHHHhhcCCC--CCC----HHHHHHHHHHhccc-c----------------------
Q psy10472         66 TWLRGNVIGLINQEP--VLFATSVRENIRYGDS--SVS----DEQIEEAAKLANAH-G----------------------  114 (181)
Q Consensus        66 ~~~r~~~i~~v~q~~--~l~~~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~-~----------------------  114 (181)
                      ..+++ .+||+||++  .+|..||+||+.|+..  ...    .+++.++++.+++. .                      
T Consensus       101 ~~~~~-~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~a  179 (305)
T PRK13651        101 KEIRR-RVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI  179 (305)
T ss_pred             HHHHh-ceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence            23444 599999986  5666799999998632  112    23456677777764 2                      


Q ss_pred             -------ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        115 -------FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       115 -------~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                             ++.|+||++||+.++..+++.|+++. +|+|||+||||++.+.. ||||++|++|++++ .++.
T Consensus       180 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~-~g~~  249 (305)
T PRK13651        180 LAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIK-DGDT  249 (305)
T ss_pred             HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEE-ECCH
Confidence                   35567999999999999999998864 58999999999998755 99999999999987 3443

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.3e-38  Score=253.32  Aligned_cols=163  Identities=29%  Similarity=0.460  Sum_probs=134.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC----ChhhhccCcEEEEccCC--CC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL----DGTWLRGNVIGLINQEP--VL   82 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~----~~~~~r~~~i~~v~q~~--~l   82 (181)
                      +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...    .....++ .+||+||++  .+
T Consensus        20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~-~ig~v~q~~~~~l   98 (290)
T PRK13634         20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK-KVGIVFQFPEHQL   98 (290)
T ss_pred             ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHh-hEEEEeeCchhhh
Confidence            4599999999999999999999999999999999999999999999999988532    2233444 499999997  56


Q ss_pred             ccccHHHHhhcCCCC--CC----HHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCH
Q psy10472         83 FATSVRENIRYGDSS--VS----DEQIEEAAKLANAH-G-----------------------------FISEFPSGALDN  126 (181)
Q Consensus        83 ~~~tv~enl~~~~~~--~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~  126 (181)
                      |+.||.||+.|+...  ..    .+++.++++.+++. .                             ++.|+||++||+
T Consensus        99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~  178 (290)
T PRK13634         99 FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP  178 (290)
T ss_pred             hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence            777999999876321  12    23456667777664 2                             245679999999


Q ss_pred             HHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        127 ESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       127 ~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      .++..+.++++++. + |.|||++|||++.+.. ||||++|++|++++.
T Consensus       179 ~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~  227 (290)
T PRK13634        179 KGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ  227 (290)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999998874 3 8999999999999865 999999999999873

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=1e-37  Score=250.10  Aligned_cols=166  Identities=24%  Similarity=0.441  Sum_probs=140.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      .++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+|+|.++...+...+|++ ++|+||++.+|+.|++
T Consensus        17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~-i~~v~q~~~lf~~tv~   94 (275)
T cd03289          17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA-FGVIPQKVFIFSGTFR   94 (275)
T ss_pred             CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh-EEEECCCcccchhhHH
Confidence            468999999999999999999999999999999999997 78999999999987776667654 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      +|+.+.. ....++++++++.+++..                                        ++.|+||++||+.+
T Consensus        95 ~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~  173 (275)
T cd03289          95 KNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT  173 (275)
T ss_pred             HHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHH
Confidence            9996432 234455666666555432                                        24566999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      ++.+.+.|++..+++|||+|||+++.+..||||++|++|++++ .+++++
T Consensus       174 ~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~-~g~~~~  222 (275)
T cd03289         174 YQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQ-YDSIQK  222 (275)
T ss_pred             HHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEee-cCCHHH
Confidence            9999999998767899999999999887799999999999998 455543

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=1.5e-37  Score=241.57  Aligned_cols=162  Identities=36%  Similarity=0.582  Sum_probs=133.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++...+....++ .++|+||++.+|+.|+.
T Consensus        17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~tv~   95 (220)
T cd03245          17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR-NIGYVPQDVTLFYGTLR   95 (220)
T ss_pred             cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHh-hEEEeCCCCccccchHH
Confidence            45999999999999999999999999999999999999999999999999876555444444 49999999988878999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhccc----------------------------------------cccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAH----------------------------------------GFISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~P~~~LD~~~  128 (181)
                      ||+.++......+.+.++++.+++.                                        -++.|+||++||+.+
T Consensus        96 e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~  175 (220)
T cd03245          96 DNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNS  175 (220)
T ss_pred             HHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            9998763322333333333332221                                        135577999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVE  171 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~  171 (181)
                      ++.+++.|+++.+++|||++||+++.+..||++++|++|++++
T Consensus       176 ~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~  218 (220)
T cd03245         176 EERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVA  218 (220)
T ss_pred             HHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEee
Confidence            9999999998765689999999999876699999999999876

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-37  Score=245.20  Aligned_cols=164  Identities=21%  Similarity=0.310  Sum_probs=133.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.....++.++|+||++.+++. |+
T Consensus        16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   95 (241)
T PRK10895         16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSV   95 (241)
T ss_pred             EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcH
Confidence            56999999999999999999999999999999999999999999999999987655433222349999999988875 99


Q ss_pred             HHHhhcCCCC---CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472         88 RENIRYGDSS---VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL  131 (181)
Q Consensus        88 ~enl~~~~~~---~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~  131 (181)
                      .||+.+....   ..    ...+.++++.+++..                             ++.|+||++||+.+++.
T Consensus        96 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  175 (241)
T PRK10895         96 YDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVID  175 (241)
T ss_pred             HHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence            9999875211   11    123445555544322                             35677999999999999


Q ss_pred             HHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        132 VQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       132 i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +.+++..+. +|.|+|++||+++.+.. ||++++|++|++++.
T Consensus       176 l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~  218 (241)
T PRK10895        176 IKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH  218 (241)
T ss_pred             HHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEee
Confidence            999998765 48999999999988865 999999999999873

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.1e-38  Score=251.74  Aligned_cols=163  Identities=29%  Similarity=0.447  Sum_probs=135.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-C-cccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-L-FATS   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l-~~~t   86 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....++ .++|+||++. + +..|
T Consensus        20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~-~i~~~~q~~~~~~~~~t   98 (279)
T PRK13635         20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRR-QVGMVFQNPDNQFVGAT   98 (279)
T ss_pred             ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhh-heEEEEeCHHHhccccc
Confidence            45999999999999999999999999999999999999999999999999987665544444 4999999983 4 4569


Q ss_pred             HHHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472         87 VRENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL  131 (181)
Q Consensus        87 v~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~  131 (181)
                      +.||+.++...  ..    .+++.++++.+++..                             ++.|+|+++||+.+++.
T Consensus        99 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~  178 (279)
T PRK13635         99 VQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRRE  178 (279)
T ss_pred             HHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            99999875211  11    233556666655543                             35577999999999999


Q ss_pred             HHHHHHHhc-C-CcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        132 VQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       132 i~~~l~~~~-~-~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      ++++|+++. + |+|||++||+++.+..||++++|++|++++.
T Consensus       179 l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~  221 (279)
T PRK13635        179 VLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEE  221 (279)
T ss_pred             HHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence            999998865 3 8999999999999877999999999999873

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=5.1e-38  Score=244.29  Aligned_cols=162  Identities=29%  Similarity=0.429  Sum_probs=132.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~~   85 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...   ++++.++|+||++.+|+.
T Consensus        18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~   97 (221)
T TIGR02211        18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD   97 (221)
T ss_pred             eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence            46999999999999999999999999999999999999999999999999987665432   232359999999988864


Q ss_pred             -cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         86 -SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        86 -tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                       |++||+.++..  ...    .+++.++++.+++..                             ++.|+||++||+.++
T Consensus        98 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~  177 (221)
T TIGR02211        98 FTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA  177 (221)
T ss_pred             CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence             99999986321  111    223455565555432                             356779999999999


Q ss_pred             HHHHHHHHHhc--CCcEEEEEecCchhhhcCCeEEEEeCCeEE
Q psy10472        130 KLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIV  170 (181)
Q Consensus       130 ~~i~~~l~~~~--~~~tii~vtHd~~~~~~~d~v~~l~~G~i~  170 (181)
                      +.+.++|+++.  .++|+|++|||++.+..||++++|++|+++
T Consensus       178 ~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~  220 (221)
T TIGR02211       178 KIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF  220 (221)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence            99999998864  379999999999988779999999999875

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.4e-38  Score=255.25  Aligned_cols=167  Identities=23%  Similarity=0.361  Sum_probs=135.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC----------------ChhhhccCc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL----------------DGTWLRGNV   72 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~----------------~~~~~r~~~   72 (181)
                      .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...                ....+++ .
T Consensus        39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  117 (320)
T PRK13631         39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRR-R  117 (320)
T ss_pred             ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHh-c
Confidence            3599999999999999999999999999999999999999999999999987542                1233454 4


Q ss_pred             EEEEccCC--CCccccHHHHhhcCCC--CCCH----HHHHHHHHHhccc-c-----------------------------
Q psy10472         73 IGLINQEP--VLFATSVRENIRYGDS--SVSD----EQIEEAAKLANAH-G-----------------------------  114 (181)
Q Consensus        73 i~~v~q~~--~l~~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~-~-----------------------------  114 (181)
                      ++|+||++  .+|+.|++||+.++..  ....    +++.++++.+++. .                             
T Consensus       118 ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~i  197 (320)
T PRK13631        118 VSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEI  197 (320)
T ss_pred             EEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            99999998  5777899999988632  1121    2345566666653 2                             


Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-cCCeEEEEeCCeEEeecCCch
Q psy10472        115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQ-NADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~-~~d~v~~l~~G~i~~~~~~~~  177 (181)
                      ++.|+||++||+.+++.+.++|.++. +|+|||+||||++.+. .||++++|++|++++ .++++
T Consensus       198 LLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~-~g~~~  261 (320)
T PRK13631        198 LIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK-TGTPY  261 (320)
T ss_pred             EEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHH
Confidence            35567999999999999999998764 5899999999999885 599999999999998 45443

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=9e-38  Score=244.35  Aligned_cols=164  Identities=23%  Similarity=0.357  Sum_probs=133.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....+++.++|+||++.+|+. |+
T Consensus        13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   92 (230)
T TIGR03410        13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTV   92 (230)
T ss_pred             eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcH
Confidence            46999999999999999999999999999999999999999999999999987665443323359999999998876 99


Q ss_pred             HHHhhcCCCC--CC-HHHHHHHHHHhc-cc-----------------------------cccccCCCCCCCHHHHHHHHH
Q psy10472         88 RENIRYGDSS--VS-DEQIEEAAKLAN-AH-----------------------------GFISEFPSGALDNESEKLVQA  134 (181)
Q Consensus        88 ~enl~~~~~~--~~-~~~~~~~~~~~~-~~-----------------------------~~~~~~P~~~LD~~~~~~i~~  134 (181)
                      .+|+.++...  .. .+...++++.++ +.                             -++.|+|+++||+.+++.+.+
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~  172 (230)
T TIGR03410        93 EENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGR  172 (230)
T ss_pred             HHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH
Confidence            9999865211  11 222234443332 11                             145678999999999999999


Q ss_pred             HHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        135 ALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       135 ~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +|.++. + ++|+|++||+++++.. ||++++|++|++++.
T Consensus       173 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~  213 (230)
T TIGR03410       173 VIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVAS  213 (230)
T ss_pred             HHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            998864 3 7999999999999976 999999999999873

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=7.7e-38  Score=250.32  Aligned_cols=165  Identities=27%  Similarity=0.447  Sum_probs=134.8

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCcc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFA   84 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~   84 (181)
                      .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...   .+++.++|+||++.+|+
T Consensus        36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~  115 (269)
T cd03294          36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLP  115 (269)
T ss_pred             CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCC
Confidence            356899999999999999999999999999999999999999999999999887654332   23345999999998886


Q ss_pred             -ccHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472         85 -TSVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES  128 (181)
Q Consensus        85 -~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~  128 (181)
                       .|+.||+.++..  ...    .+++.++++.+++..                             ++.|+||++||+.+
T Consensus       116 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~  195 (269)
T cd03294         116 HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLI  195 (269)
T ss_pred             CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence             499999987421  111    233455666655433                             35677999999999


Q ss_pred             HHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        129 EKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       129 ~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++.+.+++.++. + |+|+|++||+++.+.. ||++++|++|++++.
T Consensus       196 ~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~  242 (269)
T cd03294         196 RREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQV  242 (269)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence            999999998864 3 8999999999998865 999999999999873

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=6e-38  Score=297.40  Aligned_cols=168  Identities=33%  Similarity=0.530  Sum_probs=151.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.|||.++.+++...+|++ |++|||+|.+|++|++
T Consensus      1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~-IsiVpQdp~LF~GTIr 1330 (1622)
T PLN03130       1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV-LGIIPQAPVLFSGTVR 1330 (1622)
T ss_pred             CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhc-cEEECCCCccccccHH
Confidence            469999999999999999999999999999999999999999999999999999999999876 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      |||.++. ..++++++++++.+++.+                                        ++.|+||++||.++
T Consensus      1331 eNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~T 1409 (1622)
T PLN03130       1331 FNLDPFN-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409 (1622)
T ss_pred             HHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence            9999875 457788888888776544                                        24466999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      .+.+.+.|++..+++|+|+|+|+++.+..||+|++|++|+++| .++++++
T Consensus      1410 e~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE-~Gt~~eL 1459 (1622)
T PLN03130       1410 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVE-FDTPENL 1459 (1622)
T ss_pred             HHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence            9999999998878999999999999999999999999999999 5666543

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=5.6e-38  Score=255.02  Aligned_cols=162  Identities=27%  Similarity=0.407  Sum_probs=132.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ...++ .+||+||++.+++. |+
T Consensus        17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~-~i~~v~q~~~~~~~~tv   94 (303)
T TIGR01288        17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA-RLARV-AIGVVPQFDNLDPEFTV   94 (303)
T ss_pred             eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH-HHHhh-cEEEEeccccCCcCCcH
Confidence            46999999999999999999999999999999999999999999999999875432 33344 49999999988864 99


Q ss_pred             HHHhhcCC--CCCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGD--SSVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~--~~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      .||+.+..  .....    +.+.++++.+++..                             ++.|+||++||+.+++.+
T Consensus        95 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l  174 (303)
T TIGR01288        95 RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI  174 (303)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence            99997531  11121    23345555554432                             356779999999999999


Q ss_pred             HHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        133 QAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       133 ~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +++++++. +|.|||++||+++++.. ||++++|++|+++..
T Consensus       175 ~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~  216 (303)
T TIGR01288       175 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE  216 (303)
T ss_pred             HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99998864 58999999999999965 999999999999873

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.2e-38  Score=245.39  Aligned_cols=168  Identities=22%  Similarity=0.339  Sum_probs=134.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....+++.++|+||++.+|+. |+
T Consensus        18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   97 (237)
T PRK11614         18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTV   97 (237)
T ss_pred             ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcH
Confidence            56999999999999999999999999999999999999999999999999987665443333459999999998875 99


Q ss_pred             HHHhhcCCCCCC----HHHHHHHHHHh-cccc-----------------------------ccccCCCCCCCHHHHHHHH
Q psy10472         88 RENIRYGDSSVS----DEQIEEAAKLA-NAHG-----------------------------FISEFPSGALDNESEKLVQ  133 (181)
Q Consensus        88 ~enl~~~~~~~~----~~~~~~~~~~~-~~~~-----------------------------~~~~~P~~~LD~~~~~~i~  133 (181)
                      .+|+.++.....    .+.+.++++.+ ++..                             ++.|+||++||+.+++.+.
T Consensus        98 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~  177 (237)
T PRK11614         98 EENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIF  177 (237)
T ss_pred             HHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHH
Confidence            999987531111    12233333333 1211                             3567899999999999999


Q ss_pred             HHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        134 AALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       134 ~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      +.++++. +|.|+|++||+++++.. ||++++|++|++++ .++.+
T Consensus       178 ~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~  222 (237)
T PRK11614        178 DTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVL-EDTGD  222 (237)
T ss_pred             HHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEe-eCCHH
Confidence            9998864 58999999999998755 99999999999987 44443

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.8e-38  Score=262.06  Aligned_cols=168  Identities=23%  Similarity=0.411  Sum_probs=137.2

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCE----ECCCCChhh---hccCcEEEEccCC
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGV----DLKHLDGTW---LRGNVIGLINQEP   80 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~----~i~~~~~~~---~r~~~i~~v~q~~   80 (181)
                      ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+    ++...+...   .|++.++|+||++
T Consensus        36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~  115 (382)
T TIGR03415        36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF  115 (382)
T ss_pred             CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence            356899999999999999999999999999999999999999999999997    454444332   3444699999999


Q ss_pred             CCcc-ccHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCC
Q psy10472         81 VLFA-TSVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGAL  124 (181)
Q Consensus        81 ~l~~-~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~L  124 (181)
                      .+|+ .|++||+.++..  ...    .+++.++++.+++..                             ++.|+|+++|
T Consensus       116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~L  195 (382)
T TIGR03415       116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSAL  195 (382)
T ss_pred             cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence            9998 499999987631  111    234456677666543                             3557799999


Q ss_pred             CHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        125 DNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       125 D~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      |+.++..+.+.+.++. + ++|+|+||||++++.. ||++++|++|++++ .++.
T Consensus       196 D~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~-~g~~  249 (382)
T TIGR03415       196 DPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ-HGTP  249 (382)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCH
Confidence            9999999999998764 3 8999999999999855 99999999999988 3443

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.5e-38  Score=252.41  Aligned_cols=163  Identities=25%  Similarity=0.450  Sum_probs=134.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC----hhhhccCcEEEEccCC--CC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD----GTWLRGNVIGLINQEP--VL   82 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~r~~~i~~v~q~~--~l   82 (181)
                      +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+    ...+++ .|||+||++  .+
T Consensus        20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~-~ig~v~q~~~~~l   98 (286)
T PRK13646         20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRK-RIGMVFQFPESQL   98 (286)
T ss_pred             cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHh-heEEEecChHhcc
Confidence            36999999999999999999999999999999999999999999999999986432    223454 499999997  56


Q ss_pred             ccccHHHHhhcCCCC--CC----HHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCH
Q psy10472         83 FATSVRENIRYGDSS--VS----DEQIEEAAKLANAH-G-----------------------------FISEFPSGALDN  126 (181)
Q Consensus        83 ~~~tv~enl~~~~~~--~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~  126 (181)
                      |+.|+.||+.++...  ..    .+++.++++.+++. .                             ++.|+|+++||+
T Consensus        99 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~  178 (286)
T PRK13646         99 FEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP  178 (286)
T ss_pred             chhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence            777999999886311  12    23345666666664 2                             355679999999


Q ss_pred             HHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        127 ESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       127 ~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      .++..+.++++++.  .|+|||+||||++.+.. |||+++|++|++++.
T Consensus       179 ~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~  227 (286)
T PRK13646        179 QSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ  227 (286)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999998864  48999999999999854 999999999999873

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-37  Score=246.51  Aligned_cols=163  Identities=27%  Similarity=0.468  Sum_probs=135.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC---CCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~---p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~   85 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++   |++|+|.++|+++...+....++ .++|+||++.+|+.
T Consensus        15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~-~i~~~~q~~~l~~~   93 (246)
T PRK14269         15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK-NVGMVFQQPNVFVK   93 (246)
T ss_pred             EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh-hEEEEecCCccccc
Confidence            469999999999999999999999999999999999974   79999999999987665445554 49999999999988


Q ss_pred             cHHHHhhcCCC--C---C---CHHHHHHHHHHhcccc---------------------------------ccccCCCCCC
Q psy10472         86 SVRENIRYGDS--S---V---SDEQIEEAAKLANAHG---------------------------------FISEFPSGAL  124 (181)
Q Consensus        86 tv~enl~~~~~--~---~---~~~~~~~~~~~~~~~~---------------------------------~~~~~P~~~L  124 (181)
                      |++||+.++..  .   .   ..+++.++++.+++..                                 ++.|+|+++|
T Consensus        94 tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~L  173 (246)
T PRK14269         94 SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSAL  173 (246)
T ss_pred             cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence            99999987521  1   0   1123455666666521                                 3456799999


Q ss_pred             CHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        125 DNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       125 D~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      |+.++..+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.
T Consensus       174 D~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~  222 (246)
T PRK14269        174 DPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEF  222 (246)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEE
Confidence            999999999999887668999999999998865 999999999999873

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=5.2e-38  Score=232.61  Aligned_cols=156  Identities=36%  Similarity=0.519  Sum_probs=134.4

Q ss_pred             eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhh
Q psy10472         14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIR   92 (181)
Q Consensus        14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~   92 (181)
                      ..+++|++||+++|+|||||||||||++|+|+..|.+|+|.|+|++.+..++.+  + -++++||+.++|.. ||.+|+.
T Consensus        17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--R-PVSmlFQEnNLFaHLtV~qNig   93 (231)
T COG3840          17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--R-PVSMLFQENNLFAHLTVAQNIG   93 (231)
T ss_pred             EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--C-Chhhhhhccccchhhhhhhhhc
Confidence            578899999999999999999999999999999999999999999998766553  2 38999999999986 9999999


Q ss_pred             cCCCC------CCHHHHHHHHHHhccccc-----------------------------cccCCCCCCCHHHHHHHHHHHH
Q psy10472         93 YGDSS------VSDEQIEEAAKLANAHGF-----------------------------ISEFPSGALDNESEKLVQAALE  137 (181)
Q Consensus        93 ~~~~~------~~~~~~~~~~~~~~~~~~-----------------------------~~~~P~~~LD~~~~~~i~~~l~  137 (181)
                      ++.+.      ..+++++.++..+++.++                             +.|+||++|||.-+.++..++.
T Consensus        94 LGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~  173 (231)
T COG3840          94 LGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVS  173 (231)
T ss_pred             ccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHH
Confidence            98532      134556777777766553                             4566999999999999999998


Q ss_pred             Hhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        138 SAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       138 ~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +++  ++.|++||||.++.+.. +|+++++++|+|.+.
T Consensus       174 ~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~  211 (231)
T COG3840         174 QLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQ  211 (231)
T ss_pred             HHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEee
Confidence            875  48999999999999976 999999999999873

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=5.6e-38  Score=296.80  Aligned_cols=168  Identities=30%  Similarity=0.481  Sum_probs=151.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+++...+|++ |+||||+|.+|++|++
T Consensus      1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~-i~iVpQdp~LF~gTIr 1327 (1495)
T PLN03232       1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV-LSIIPQSPVLFSGTVR 1327 (1495)
T ss_pred             CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhh-cEEECCCCeeeCccHH
Confidence            469999999999999999999999999999999999999999999999999999998888876 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      |||.++. ..++++++++++.+++.+                                        ++.|+||++||+++
T Consensus      1328 ~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~T 1406 (1495)
T PLN03232       1328 FNIDPFS-EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406 (1495)
T ss_pred             HHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence            9999874 467788888888766543                                        24466999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      .+.+.+.|++..+++|+|+|+|+++.+..||+|++|++|+++| .++++++
T Consensus      1407 e~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE-~Gt~~eL 1456 (1495)
T PLN03232       1407 DSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLE-YDSPQEL 1456 (1495)
T ss_pred             HHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence            9999999998778999999999999999999999999999999 5666543

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-38  Score=252.44  Aligned_cols=167  Identities=31%  Similarity=0.470  Sum_probs=141.8

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCCCccc-c
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPVLFAT-S   86 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~l~~~-t   86 (181)
                      -++|+||+|+.||+++|+|-||||||||+|++++|++|++|+|.++|.++..++..   .+|++.+++|||++.|+|. |
T Consensus        43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt  122 (386)
T COG4175          43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT  122 (386)
T ss_pred             eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence            57899999999999999999999999999999999999999999999999988865   4567789999999999986 9


Q ss_pred             HHHHhhcCCCC------CCHHHHHHHHHHhccccc-----------------------------cccCCCCCCCHHHHHH
Q psy10472         87 VRENIRYGDSS------VSDEQIEEAAKLANAHGF-----------------------------ISEFPSGALDNESEKL  131 (181)
Q Consensus        87 v~enl~~~~~~------~~~~~~~~~~~~~~~~~~-----------------------------~~~~P~~~LD~~~~~~  131 (181)
                      |.||+.|+..-      ..+++..++++.+++.++                             +.++||++|||--+.+
T Consensus       123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~  202 (386)
T COG4175         123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTE  202 (386)
T ss_pred             HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHH
Confidence            99999998532      123345566777766553                             4566999999999999


Q ss_pred             HHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472        132 VQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       132 i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      +.+.|.++. + ++|||+||||++++-. .|||.+|++|+|+. -+++++
T Consensus       203 mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ-~Gtp~e  251 (386)
T COG4175         203 MQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQ-VGTPEE  251 (386)
T ss_pred             HHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEE-eCCHHH
Confidence            998887654 3 8999999999999866 99999999999998 465543

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-37  Score=247.48  Aligned_cols=163  Identities=21%  Similarity=0.327  Sum_probs=134.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+....++..++|+||++.+|+. |+
T Consensus        18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   97 (255)
T PRK11300         18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTV   97 (255)
T ss_pred             EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcH
Confidence            46999999999999999999999999999999999999999999999999987665444433458999999999885 99


Q ss_pred             HHHhhcCCCC------------------CC---HHHHHHHHHHhcccc-----------------------------ccc
Q psy10472         88 RENIRYGDSS------------------VS---DEQIEEAAKLANAHG-----------------------------FIS  117 (181)
Q Consensus        88 ~enl~~~~~~------------------~~---~~~~~~~~~~~~~~~-----------------------------~~~  117 (181)
                      .||+.++...                  ..   .+.+.++++.+++..                             ++.
T Consensus        98 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll  177 (255)
T PRK11300         98 IENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILML  177 (255)
T ss_pred             HHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9999874210                  00   123344555554432                             356


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        118 EFPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       118 ~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      |+|+++||+.+++.+.++|.++. + |+|||++||+++.+.. ||++++|++|+++.
T Consensus       178 DEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~  234 (255)
T PRK11300        178 DEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA  234 (255)
T ss_pred             cCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe
Confidence            77999999999999999998864 3 8999999999999865 99999999999987

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=6.6e-38  Score=242.16  Aligned_cols=160  Identities=28%  Similarity=0.440  Sum_probs=133.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++++++||+|++| +++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+++ .++|+||++.+|+. |+
T Consensus        13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~-~i~~~~q~~~~~~~~tv   89 (211)
T cd03264          13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRR-RIGYLPQEFGVYPNFTV   89 (211)
T ss_pred             EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHh-heEEecCCCcccccCCH
Confidence            46999999999999 99999999999999999999999999999999999876554 44444 49999999998875 99


Q ss_pred             HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      .||+.+...  ...    .+++.++++.+++..                             ++.|+||++||+.+++.+
T Consensus        90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l  169 (211)
T cd03264          90 REFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF  169 (211)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence            999976321  111    234455666555432                             356779999999999999


Q ss_pred             HHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        133 QAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       133 ~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      .+.++++.++.|+|++|||++.+.. ||++++|++|++++
T Consensus       170 ~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~  209 (211)
T cd03264         170 RNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF  209 (211)
T ss_pred             HHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence            9999987667999999999999865 99999999999976

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=2.6e-37  Score=242.56  Aligned_cols=162  Identities=51%  Similarity=0.770  Sum_probs=133.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.+|+.|+.
T Consensus        14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~tv~   92 (236)
T cd03253          14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR-AIGVVPQDTVLFNDTIG   92 (236)
T ss_pred             CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHh-hEEEECCCChhhcchHH
Confidence            45999999999999999999999999999999999999999999999999987665555554 49999999999988999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcc----------------------------------------ccccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANA----------------------------------------HGFISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~P~~~LD~~~  128 (181)
                      ||+.++........+..+++.+++                                        .-++.|+|+++||+.+
T Consensus        93 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~  172 (236)
T cd03253          93 YNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT  172 (236)
T ss_pred             HHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            999886432222222221111110                                        1135677999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVE  171 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~  171 (181)
                      ++.+.++|.++.+|.|+|++||+++.+..||++++|++|++++
T Consensus       173 ~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~  215 (236)
T cd03253         173 EREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVE  215 (236)
T ss_pred             HHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEe
Confidence            9999999988756899999999999987799999999999987

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=1.5e-37  Score=272.02  Aligned_cols=168  Identities=42%  Similarity=0.656  Sum_probs=145.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+. ++|++|++.+|++|++
T Consensus       348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~-i~~v~q~~~lf~~ti~  426 (585)
T TIGR01192       348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKS-IATVFQDAGLFNRSIR  426 (585)
T ss_pred             CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhh-eEEEccCCccCcccHH
Confidence            458999999999999999999999999999999999999999999999999988887777765 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      ||+.++.+..++++++++++.+++.+                                        ++.|+||++||+.+
T Consensus       427 ~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~  506 (585)
T TIGR01192       427 ENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET  506 (585)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence            99999865455666655554432221                                        34567999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      ++.+.+.+.+..+++|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus       507 ~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~-~g~~~~  555 (585)
T TIGR01192       507 EARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIE-KGSFQE  555 (585)
T ss_pred             HHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEE-ECCHHH
Confidence            9999999988777899999999999998899999999999988 455443

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-37  Score=249.20  Aligned_cols=162  Identities=27%  Similarity=0.494  Sum_probs=133.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh-hhhccCcEEEEccCCC--Cccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG-TWLRGNVIGLINQEPV--LFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~-~~~r~~~i~~v~q~~~--l~~~   85 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. ..+++ .++|+||++.  ++..
T Consensus        15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~-~i~~v~q~~~~~~~~~   93 (274)
T PRK13644         15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK-LVGIVFQNPETQFVGR   93 (274)
T ss_pred             CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHh-heEEEEEChhhhcccc
Confidence            459999999999999999999999999999999999999999999999998865543 33444 5999999985  3456


Q ss_pred             cHHHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHH
Q psy10472         86 SVRENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEK  130 (181)
Q Consensus        86 tv~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~  130 (181)
                      |+.||+.++...  ..    .+.+.++++.+++..                             ++.|+||++||+.++.
T Consensus        94 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~  173 (274)
T PRK13644         94 TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI  173 (274)
T ss_pred             hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence            999999875321  11    233455566555433                             3567799999999999


Q ss_pred             HHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472        131 LVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVE  171 (181)
Q Consensus       131 ~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~  171 (181)
                      .+++.++++. +|.|||++|||++.+..||++++|++|++++
T Consensus       174 ~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~  215 (274)
T PRK13644        174 AVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVL  215 (274)
T ss_pred             HHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEE
Confidence            9999998865 5899999999999986699999999999987

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=1.5e-37  Score=233.53  Aligned_cols=157  Identities=32%  Similarity=0.519  Sum_probs=130.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.+|+.|++
T Consensus        15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~tv~   93 (173)
T cd03246          15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD-HVGYLPQDDELFSGSIA   93 (173)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHh-heEEECCCCccccCcHH
Confidence            45999999999999999999999999999999999999999999999999987766555554 49999999988888999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEeC
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQA  166 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~  166 (181)
                      ||+ +  +....+++.-+...+ +..-++.|+|+++||+.++..+.+.++++. +|+|+|++|||++.+..||++++|++
T Consensus        94 ~~l-L--S~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~  170 (173)
T cd03246          94 ENI-L--SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLED  170 (173)
T ss_pred             HHC-c--CHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence            998 2  112233333222222 334467899999999999999999998875 48999999999998867999999999


Q ss_pred             CeE
Q psy10472        167 GQI  169 (181)
Q Consensus       167 G~i  169 (181)
                      |++
T Consensus       171 G~i  173 (173)
T cd03246         171 GRV  173 (173)
T ss_pred             CCC
Confidence            974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=1.5e-37  Score=242.05  Aligned_cols=162  Identities=25%  Similarity=0.387  Sum_probs=133.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCcc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFA-   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~-   84 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...   +++ .++|+||++.+++ 
T Consensus        15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~-~i~~~~q~~~~~~~   93 (222)
T PRK10908         15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR-QIGMIFQDHHLLMD   93 (222)
T ss_pred             CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh-heEEEecCcccccc
Confidence            56999999999999999999999999999999999999999999999999887654322   343 5999999998765 


Q ss_pred             ccHHHHhhcCC--CCCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         85 TSVRENIRYGD--SSVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        85 ~tv~enl~~~~--~~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                      .|+.||+.++.  .....    +++.++++.+++..                             ++.|+|+++||+.++
T Consensus        94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  173 (222)
T PRK10908         94 RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALS  173 (222)
T ss_pred             ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence            59999998752  11111    23445555555432                             356779999999999


Q ss_pred             HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      +.+.++++++. ++.|+|++||+++++.. ||++++|++|+++.
T Consensus       174 ~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        174 EGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            99999998864 58999999999999976 99999999999875

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=1e-37  Score=241.31  Aligned_cols=160  Identities=31%  Similarity=0.479  Sum_probs=132.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..  + +.++|+||++.+++. |+
T Consensus        13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~-~~i~~~~q~~~~~~~~tv   89 (213)
T cd03301          13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--D-RDIAMVFQNYALYPHMTV   89 (213)
T ss_pred             eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--c-ceEEEEecChhhccCCCH
Confidence            4699999999999999999999999999999999999999999999999998654332  2 349999999988864 99


Q ss_pred             HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +||+.++..  ...    .+++.++++.+++..                             ++.|+|+++||+.+++.+
T Consensus        90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l  169 (213)
T cd03301          90 YDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQM  169 (213)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence            999987521  111    223445555555432                             356779999999999999


Q ss_pred             HHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        133 QAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       133 ~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      .+.++++.  .++|+|++|||++++.. ||++++|++|++++
T Consensus       170 ~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~  211 (213)
T cd03301         170 RAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ  211 (213)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence            99998864  38999999999999866 99999999999986

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.2e-38  Score=232.06  Aligned_cols=167  Identities=24%  Similarity=0.350  Sum_probs=141.1

Q ss_pred             CccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472          4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF   83 (181)
Q Consensus         4 ~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~   83 (181)
                      +.....++|+++||.+.+||+++|+||||||||||+|+++.|.+|++|+++|.|++++.+.+..+|++ |+|+.|.|.||
T Consensus        11 y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~-VsY~~Q~paLf   89 (223)
T COG4619          11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQ-VSYCAQTPALF   89 (223)
T ss_pred             hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHH-HHHHHcCcccc
Confidence            34455789999999999999999999999999999999999999999999999999999999999876 99999999999


Q ss_pred             cccHHHHhhcCC----CCCCHHHHHHHHHHhccc------------------------------cccccCCCCCCCHHHH
Q psy10472         84 ATSVRENIRYGD----SSVSDEQIEEAAKLANAH------------------------------GFISEFPSGALDNESE  129 (181)
Q Consensus        84 ~~tv~enl~~~~----~~~~~~~~~~~~~~~~~~------------------------------~~~~~~P~~~LD~~~~  129 (181)
                      +.||++|+.|+.    ...+.......+..+++.                              -++.++||++||+.++
T Consensus        90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nk  169 (223)
T COG4619          90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK  169 (223)
T ss_pred             ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhH
Confidence            999999999973    222333333333333322                              2466889999999999


Q ss_pred             HHHHHHHHHhc--CCcEEEEEecCchhhh-cCCeEEEEeCCeEEe
Q psy10472        130 KLVQAALESAC--KGRTVLMIAHRLSTVQ-NADLIVVLQAGQIVE  171 (181)
Q Consensus       130 ~~i~~~l~~~~--~~~tii~vtHd~~~~~-~~d~v~~l~~G~i~~  171 (181)
                      +.+.+++.++.  ++.++++||||..++- .+|+++.+..|++-+
T Consensus       170 r~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~  214 (223)
T COG4619         170 RNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE  214 (223)
T ss_pred             HHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence            99999998864  4899999999999964 599999999998754

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=1e-37  Score=240.98  Aligned_cols=159  Identities=32%  Similarity=0.584  Sum_probs=130.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--Ccccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFATS   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~~t   86 (181)
                      +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.  ++..|
T Consensus        14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~~~t   92 (211)
T cd03225          14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRR-KVGLVFQNPDDQFFGPT   92 (211)
T ss_pred             eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHh-hceEEecChhhhcCCCc
Confidence            56999999999999999999999999999999999999999999999999887655444454 4999999984  44569


Q ss_pred             HHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472         87 VRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL  131 (181)
Q Consensus        87 v~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~  131 (181)
                      +.||+.++..  ...    .+.+.++++.+++..                             ++.|+||++||+.+++.
T Consensus        93 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  172 (211)
T cd03225          93 VEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE  172 (211)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence            9999987421  111    223445555555432                             35677999999999999


Q ss_pred             HHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCe
Q psy10472        132 VQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQ  168 (181)
Q Consensus       132 i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~  168 (181)
                      +.+.++++. +++|+|++|||++++.. ||++++|++|+
T Consensus       173 ~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            999998865 48999999999999976 99999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=1.1e-37  Score=241.12  Aligned_cols=160  Identities=29%  Similarity=0.477  Sum_probs=131.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCCCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~l~~~   85 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..   .+++ .++|+||++.+|+.
T Consensus        14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~-~i~~v~q~~~~~~~   92 (214)
T cd03292          14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR-KIGVVFQDFRLLPD   92 (214)
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH-heEEEecCchhccC
Confidence            4699999999999999999999999999999999999999999999999988765432   2343 49999999998875


Q ss_pred             -cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         86 -SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        86 -tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                       |+.||+.++..  ...    .+++.++++.+++..                             ++.|+||++||+.++
T Consensus        93 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  172 (214)
T cd03292          93 RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT  172 (214)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence             99999987521  111    223455565555432                             356779999999999


Q ss_pred             HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeE
Q psy10472        130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI  169 (181)
Q Consensus       130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i  169 (181)
                      +.+.+.++++. +++|+|++||+++.+.. ||++++|++|++
T Consensus       173 ~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         173 WEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999998864 58999999999999875 999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=2.2e-37  Score=269.09  Aligned_cols=169  Identities=36%  Similarity=0.571  Sum_probs=145.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+. ++|+||++.+|++|++
T Consensus       331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~-i~~v~q~~~lf~~ti~  409 (544)
T TIGR01842       331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH-IGYLPQDVELFPGTVA  409 (544)
T ss_pred             ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh-eEEecCCcccccccHH
Confidence            468999999999999999999999999999999999999999999999999988887777764 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      ||+.++....+++++.++++.+++.+                                        ++.|+||++||+++
T Consensus       410 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~  489 (544)
T TIGR01842       410 ENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEG  489 (544)
T ss_pred             HHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHH
Confidence            99987654455666666655443221                                        34567999999999


Q ss_pred             HHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        129 EKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       129 ~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      ++.+.+.+.... +++|+|++||+++.+..||+|++|++|++++ .+++++.
T Consensus       490 ~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~-~g~~~~l  540 (544)
T TIGR01842       490 EQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIAR-FGERDEV  540 (544)
T ss_pred             HHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEe-eCCHHHH
Confidence            999999998875 5899999999999887799999999999998 5665543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=1.1e-37  Score=241.30  Aligned_cols=159  Identities=28%  Similarity=0.456  Sum_probs=131.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCCCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~l~~~   85 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..   .+++ .++|+||++.+|+.
T Consensus        15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~   93 (214)
T TIGR02673        15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR-RIGVVFQDFRLLPD   93 (214)
T ss_pred             ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh-heEEEecChhhccC
Confidence            4699999999999999999999999999999999999999999999999998765432   2333 49999999998874


Q ss_pred             -cHHHHhhcCCC--CC----CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         86 -SVRENIRYGDS--SV----SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        86 -tv~enl~~~~~--~~----~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                       |+.||+.++..  ..    ..+++.++++.+++..                             ++.|+||++||+.++
T Consensus        94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~  173 (214)
T TIGR02673        94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS  173 (214)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence             99999987421  11    1234455565555432                             356779999999999


Q ss_pred             HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCe
Q psy10472        130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQ  168 (181)
Q Consensus       130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~  168 (181)
                      ..+.+.++++. +++|+|++||+++++.. ||++++|++|+
T Consensus       174 ~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       174 ERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            99999998864 58999999999999876 99999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.4e-37  Score=244.80  Aligned_cols=163  Identities=25%  Similarity=0.471  Sum_probs=133.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh--hhhccCcEEEEccCCCCccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG--TWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~--~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.  ..+++ .++|+||++.+++. 
T Consensus        14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~~   92 (240)
T PRK09493         14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQ-EAGMVFQQFYLFPHL   92 (240)
T ss_pred             eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhh-ceEEEecccccCCCC
Confidence            469999999999999999999999999999999999999999999999998865322  23343 49999999988874 


Q ss_pred             cHHHHhhcCCC---CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         86 SVRENIRYGDS---SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        86 tv~enl~~~~~---~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                      |+.+|+.++..   ...    .+.+.++++.+++..                             ++.|+||++||+.++
T Consensus        93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~  172 (240)
T PRK09493         93 TALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELR  172 (240)
T ss_pred             cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            99999987521   111    123445555555432                             355779999999999


Q ss_pred             HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +.+.++++++. +++|+|++||+++.+.. ||++++|++|++++.
T Consensus       173 ~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  217 (240)
T PRK09493        173 HEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAED  217 (240)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence            99999998864 58999999999999965 999999999999873

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.8e-37  Score=245.18  Aligned_cols=163  Identities=31%  Similarity=0.501  Sum_probs=134.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-----cceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDLKHL--DGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-----~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~   81 (181)
                      +.+++++||+|++||+++|+||||||||||+++|+|+++|+     +|+|.++|+++...  .....++ .++|+||++.
T Consensus        14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~v~q~~~   92 (247)
T TIGR00972        14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRR-RVGMVFQKPN   92 (247)
T ss_pred             eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHh-heEEEecCcc
Confidence            46899999999999999999999999999999999999998     99999999988643  2223343 5999999998


Q ss_pred             CccccHHHHhhcCCC--C-CC----HHHHHHHHHHhccc----c-----------------------------ccccCCC
Q psy10472         82 LFATSVRENIRYGDS--S-VS----DEQIEEAAKLANAH----G-----------------------------FISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~----~-----------------------------~~~~~P~  121 (181)
                      +|+.|+.||+.++..  . ..    .+.+.++++.+++.    .                             ++.|+||
T Consensus        93 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt  172 (247)
T TIGR00972        93 PFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT  172 (247)
T ss_pred             cCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            888899999986421  1 11    23345566666654    2                             3456799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++||+.++..+.++++++.+++|+|++||+++.+.. ||++++|++|++++.
T Consensus       173 ~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  224 (247)
T TIGR00972       173 SALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEY  224 (247)
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999987656899999999998865 999999999999873

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=1.6e-37  Score=248.47  Aligned_cols=163  Identities=21%  Similarity=0.351  Sum_probs=133.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCCCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~l~~~   85 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..   ..++ .++|+||++.+|+.
T Consensus        20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~-~i~~v~q~~~~~~~   98 (269)
T PRK11831         20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK-RMSMLFQSGALFTD   98 (269)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh-cEEEEecccccCCC
Confidence            4689999999999999999999999999999999999999999999999988665432   2233 49999999998875


Q ss_pred             -cHHHHhhcCCC---CCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472         86 -SVRENIRYGDS---SVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNES  128 (181)
Q Consensus        86 -tv~enl~~~~~---~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~  128 (181)
                       |+.||+.++..   ....    +.+.++++.+++..                             ++.|+||++||+.+
T Consensus        99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~  178 (269)
T PRK11831         99 MNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT  178 (269)
T ss_pred             CCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence             99999976421   1111    23344555555432                             35677999999999


Q ss_pred             HHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        129 EKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       129 ~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++.+.++++++. + |+|||++|||++.+.. ||++++|++|++++.
T Consensus       179 ~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~  225 (269)
T PRK11831        179 MGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAH  225 (269)
T ss_pred             HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEe
Confidence            999999998864 3 7999999999998866 999999999999873

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-37  Score=250.08  Aligned_cols=166  Identities=28%  Similarity=0.439  Sum_probs=134.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC----hhhhccCcEEEEccCC--CC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD----GTWLRGNVIGLINQEP--VL   82 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~r~~~i~~v~q~~--~l   82 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....    ....++ .++|+||++  .+
T Consensus        20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~-~ig~v~q~~~~~~   98 (287)
T PRK13641         20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRK-KVSLVFQFPEAQL   98 (287)
T ss_pred             ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHh-ceEEEEeChhhhh
Confidence            46999999999999999999999999999999999999999999999999885421    223333 599999997  46


Q ss_pred             ccccHHHHhhcCCC--CCC----HHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCH
Q psy10472         83 FATSVRENIRYGDS--SVS----DEQIEEAAKLANAH-G-----------------------------FISEFPSGALDN  126 (181)
Q Consensus        83 ~~~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~  126 (181)
                      |+.|+.||+.++..  ...    .+++.++++.+++. .                             ++.|+|+++||+
T Consensus        99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~  178 (287)
T PRK13641         99 FENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP  178 (287)
T ss_pred             ccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence            66799999986421  111    23356666666664 2                             355779999999


Q ss_pred             HHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        127 ESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       127 ~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      .+++.+.++++++. +|.|||++|||++.+.. ||++++|++|++++ .++.
T Consensus       179 ~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~-~g~~  229 (287)
T PRK13641        179 EGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK-HASP  229 (287)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCH
Confidence            99999999998875 58999999999999865 99999999999987 3443

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=2.3e-37  Score=241.71  Aligned_cols=162  Identities=28%  Similarity=0.444  Sum_probs=133.4

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCccc-
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~~-   85 (181)
                      ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...   .+++.++|+||++.+++. 
T Consensus        24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~  103 (228)
T PRK10584         24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL  103 (228)
T ss_pred             EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence            4899999999999999999999999999999999999999999999999987655432   233359999999988875 


Q ss_pred             cHHHHhhcCC--CCCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHH
Q psy10472         86 SVRENIRYGD--SSVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEK  130 (181)
Q Consensus        86 tv~enl~~~~--~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~  130 (181)
                      |+.||+.++.  ....    .+++.++++.+++..                             ++.|+||++||+.+++
T Consensus       104 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~  183 (228)
T PRK10584        104 NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD  183 (228)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence            9999997642  1111    234455565555432                             3567799999999999


Q ss_pred             HHHHHHHHhc-C-CcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472        131 LVQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVE  171 (181)
Q Consensus       131 ~i~~~l~~~~-~-~~tii~vtHd~~~~~~~d~v~~l~~G~i~~  171 (181)
                      .+.+.++++. + +.|||++|||++.+..||++++|++|++++
T Consensus       184 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~  226 (228)
T PRK10584        184 KIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE  226 (228)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence            9999998864 3 899999999999886799999999999976

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=2.7e-37  Score=242.62  Aligned_cols=162  Identities=30%  Similarity=0.515  Sum_probs=133.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++ .++|+||++.+++ .|+
T Consensus        14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~-~i~~~~q~~~~~~~~t~   91 (236)
T TIGR03864        14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALA-RLGVVFQQPTLDLDLSV   91 (236)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhh-hEEEeCCCCCCcccCcH
Confidence            5699999999999999999999999999999999999999999999999988655433 233 4999999998865 599


Q ss_pred             HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      .+|+.+...  ...    .+.+.++++.+++..                             ++.|+|+++||+.+++.+
T Consensus        92 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l  171 (236)
T TIGR03864        92 RQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI  171 (236)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence            999976421  111    223445555554432                             356779999999999999


Q ss_pred             HHHHHHhc--CCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        133 QAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       133 ~~~l~~~~--~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      .+.++++.  +|.|+|++||+++.+..||++++|++|++++.
T Consensus       172 ~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~  213 (236)
T TIGR03864       172 VAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLAD  213 (236)
T ss_pred             HHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEe
Confidence            99998864  48999999999999867999999999999873

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-37  Score=249.23  Aligned_cols=166  Identities=26%  Similarity=0.441  Sum_probs=134.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC--CChhhhccCcEEEEccCC--CCcc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH--LDGTWLRGNVIGLINQEP--VLFA   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~--~~~~~~r~~~i~~v~q~~--~l~~   84 (181)
                      +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..  .+...+++ .++|+||++  .+++
T Consensus        19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~-~ig~v~q~~~~~~~~   97 (283)
T PRK13636         19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE-SVGMVFQDPDNQLFS   97 (283)
T ss_pred             CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh-hEEEEecCcchhhcc
Confidence            469999999999999999999999999999999999999999999999998742  22234444 499999998  4566


Q ss_pred             ccHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         85 TSVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        85 ~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                      .|++||+.++..  ...    .+++..+++.+++..                             ++.|+|+++||+.++
T Consensus        98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~  177 (283)
T PRK13636         98 ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV  177 (283)
T ss_pred             ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence            799999987421  111    233456666655533                             356779999999999


Q ss_pred             HHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        130 KLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       130 ~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      +.+.++++++. + |.|||++||+++.+.. |||+++|++|++++ .++.
T Consensus       178 ~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~-~g~~  226 (283)
T PRK13636        178 SEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVIL-QGNP  226 (283)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCH
Confidence            99999998864 3 8999999999999865 99999999999987 4443

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=4.8e-37  Score=238.80  Aligned_cols=161  Identities=37%  Similarity=0.588  Sum_probs=134.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++ .++|+||++.+++.|+.
T Consensus        17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~l~~~tv~   95 (221)
T cd03244          17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS-RISIIPQDPVLFSGTIR   95 (221)
T ss_pred             cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhh-hEEEECCCCccccchHH
Confidence            46999999999999999999999999999999999999999999999999887666555554 49999999998888999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      ||+.+... ...+++.++++.+++..                                        ++.|+|+++||+.+
T Consensus        96 enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~  174 (221)
T cd03244          96 SNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET  174 (221)
T ss_pred             HHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            99986532 23333343333332211                                        34577999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVE  171 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~  171 (181)
                      ++.+.++++++.++.|+|++||+++.+..||++++|++|++++
T Consensus       175 ~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~  217 (221)
T cd03244         175 DALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVE  217 (221)
T ss_pred             HHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEe
Confidence            9999999998766799999999999987799999999999987

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=2.3e-37  Score=243.93  Aligned_cols=163  Identities=29%  Similarity=0.503  Sum_probs=135.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv   87 (181)
                      +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+....++ .++|+||++.+|+ .|+
T Consensus        14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~~tv   92 (242)
T cd03295          14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR-KIGYVIQQIGLFPHMTV   92 (242)
T ss_pred             ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhc-ceEEEccCccccCCCcH
Confidence            46899999999999999999999999999999999999999999999999887655544544 4999999999887 599


Q ss_pred             HHHhhcCCC--CCC----HHHHHHHHHHhcccc-------------------------------ccccCCCCCCCHHHHH
Q psy10472         88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-------------------------------FISEFPSGALDNESEK  130 (181)
Q Consensus        88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-------------------------------~~~~~P~~~LD~~~~~  130 (181)
                      +||+.++..  ...    .+.+.++++.+++..                               ++.|+|+++||+.+++
T Consensus        93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~  172 (242)
T cd03295          93 EENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD  172 (242)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence            999987521  111    234456666665542                               2456799999999999


Q ss_pred             HHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        131 LVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       131 ~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      .+.+.++++. + |+|||++||+++.+.. ||++++|++|++++.
T Consensus       173 ~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~  217 (242)
T cd03295         173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQV  217 (242)
T ss_pred             HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999998864 3 8999999999998865 999999999999873

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=2.3e-37  Score=253.90  Aligned_cols=163  Identities=26%  Similarity=0.378  Sum_probs=134.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCC--CCc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEP--VLF   83 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~--~l~   83 (181)
                      ..+++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..++...   +++ .++||||++  .++
T Consensus        34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~-~i~~v~Q~~~~~l~  112 (331)
T PRK15079         34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRS-DIQMIFQDPLASLN  112 (331)
T ss_pred             eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhC-ceEEEecCchhhcC
Confidence            46899999999999999999999999999999999999999999999999998776432   344 499999998  477


Q ss_pred             c-ccHHHHhhcCCC----CCC----HHHHHHHHHHhcccc------------------------------ccccCCCCCC
Q psy10472         84 A-TSVRENIRYGDS----SVS----DEQIEEAAKLANAHG------------------------------FISEFPSGAL  124 (181)
Q Consensus        84 ~-~tv~enl~~~~~----~~~----~~~~~~~~~~~~~~~------------------------------~~~~~P~~~L  124 (181)
                      + .|+.+|+.++..    ...    .+.+.++++.+++..                              ++.|+||++|
T Consensus       113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~L  192 (331)
T PRK15079        113 PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL  192 (331)
T ss_pred             CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence            6 599999875311    112    223455666665521                              3567799999


Q ss_pred             CHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        125 DNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       125 D~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      |+.++..++++|+++. + +.|+|+||||++.+.. ||+|++|.+|++++.
T Consensus       193 D~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~  243 (331)
T PRK15079        193 DVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL  243 (331)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999998864 3 8999999999999976 999999999999983

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-37  Score=247.58  Aligned_cols=162  Identities=26%  Similarity=0.432  Sum_probs=134.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.+++. |+
T Consensus        24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~~tv  102 (265)
T PRK10575         24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR-KVAYLPQQLPAAEGMTV  102 (265)
T ss_pred             EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhh-heEEeccCCCCCCCccH
Confidence            46999999999999999999999999999999999999999999999999886655555554 49999999877765 99


Q ss_pred             HHHhhcCCCC-------C---CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472         88 RENIRYGDSS-------V---SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES  128 (181)
Q Consensus        88 ~enl~~~~~~-------~---~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~  128 (181)
                      .+|+.++...       .   ..+++..+++.+++..                             ++.|+||++||+.+
T Consensus       103 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~  182 (265)
T PRK10575        103 RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH  182 (265)
T ss_pred             HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence            9999875210       1   1234556666655432                             35577999999999


Q ss_pred             HHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        129 EKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       129 ~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      ++.+.++|.++. + +.|+|++||+++++.. ||++++|++|++++
T Consensus       183 ~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~  228 (265)
T PRK10575        183 QVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA  228 (265)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence            999999998864 3 8999999999999865 99999999999986

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-37  Score=243.47  Aligned_cols=162  Identities=28%  Similarity=0.434  Sum_probs=133.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF   83 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~   83 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...+...+++ .++|+||++.++
T Consensus        16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~-~i~~v~q~~~~~   94 (250)
T PRK14247         16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR-RVQMVFQIPNPI   94 (250)
T ss_pred             eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc-cEEEEeccCccC
Confidence            4689999999999999999999999999999999999974     6999999999987665555554 499999999876


Q ss_pred             c-ccHHHHhhcCCC--C--CC----HHHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472         84 A-TSVRENIRYGDS--S--VS----DEQIEEAAKLANAHG---------------------------------FISEFPS  121 (181)
Q Consensus        84 ~-~tv~enl~~~~~--~--~~----~~~~~~~~~~~~~~~---------------------------------~~~~~P~  121 (181)
                      + .|+.||+.++..  .  ..    .+.+.++++.+++..                                 ++.|+||
T Consensus        95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~  174 (250)
T PRK14247         95 PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT  174 (250)
T ss_pred             CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            5 599999986421  1  11    223455666665421                                 3456799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      ++||+.+++.+.+.++++.++.|+|++||+++.+.. ||++++|++|++++
T Consensus       175 ~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  225 (250)
T PRK14247        175 ANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE  225 (250)
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence            999999999999999987668999999999999865 99999999999987

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=3.6e-37  Score=232.45  Aligned_cols=160  Identities=31%  Similarity=0.493  Sum_probs=130.7

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE   89 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e   89 (181)
                      ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...+++ .++|+||++.+|+.|++|
T Consensus        16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~-~i~~~~q~~~~~~~tv~~   93 (178)
T cd03247          16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSS-LISVLNQRPYLFDTTLRN   93 (178)
T ss_pred             cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHh-hEEEEccCCeeecccHHH
Confidence            699999999999999999999999999999999999999999999999987544 333444 499999999988889999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCe
Q psy10472         90 NIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ  168 (181)
Q Consensus        90 nl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~  168 (181)
                      |+....+....+++.-+...+ ...-++.|+|+++||+.+++.+++.++++.++.|+|++||+++++..||++++|++|+
T Consensus        94 ~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~  173 (178)
T cd03247          94 NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGK  173 (178)
T ss_pred             hhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence            982111111122222222222 2344678999999999999999999988766899999999999987799999999999


Q ss_pred             EEe
Q psy10472        169 IVE  171 (181)
Q Consensus       169 i~~  171 (181)
                      +++
T Consensus       174 i~~  176 (178)
T cd03247         174 IIM  176 (178)
T ss_pred             EEe
Confidence            976

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.5e-37  Score=245.44  Aligned_cols=162  Identities=25%  Similarity=0.450  Sum_probs=134.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.+++. |+
T Consensus        15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~~tv   93 (255)
T PRK11231         15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR-RLALLPQHHLTPEGITV   93 (255)
T ss_pred             EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhh-heEEecccCCCCCCccH
Confidence            46999999999999999999999999999999999999999999999999886655544444 49999999988865 99


Q ss_pred             HHHhhcCCCC-------C---CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472         88 RENIRYGDSS-------V---SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES  128 (181)
Q Consensus        88 ~enl~~~~~~-------~---~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~  128 (181)
                      .||+.++...       .   ..+.+.++++.+++..                             ++.|+|+++||+.+
T Consensus        94 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~  173 (255)
T PRK11231         94 RELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH  173 (255)
T ss_pred             HHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence            9999875210       0   1223455566555432                             35677999999999


Q ss_pred             HHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        129 EKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       129 ~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      ++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++.
T Consensus       174 ~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~  218 (255)
T PRK11231        174 QVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMA  218 (255)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEE
Confidence            999999998864 58999999999999865 99999999999986

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=8.7e-37  Score=235.34  Aligned_cols=161  Identities=33%  Similarity=0.575  Sum_probs=133.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+....++ .++|+||++.+|+.|++
T Consensus        21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~tv~   99 (207)
T cd03369          21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS-SLTIIPQDPTLFSGTIR   99 (207)
T ss_pred             cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh-hEEEEecCCcccCccHH
Confidence            36999999999999999999999999999999999999999999999999886655555554 49999999998888999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHH----------------------hccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEE
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKL----------------------ANAHGFISEFPSGALDNESEKLVQAALESACKGRTVL  146 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii  146 (181)
                      +|+.+... ...+++.++++.                      ....-++.|+|+++||+.++..+.++|+++.+++|+|
T Consensus       100 ~~l~~~~~-~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii  178 (207)
T cd03369         100 SNLDPFDE-YSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTIL  178 (207)
T ss_pred             HHhcccCC-CCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99976532 223333333321                      0112246788999999999999999999876689999


Q ss_pred             EEecCchhhhcCCeEEEEeCCeEEe
Q psy10472        147 MIAHRLSTVQNADLIVVLQAGQIVE  171 (181)
Q Consensus       147 ~vtHd~~~~~~~d~v~~l~~G~i~~  171 (181)
                      ++||+++.+..||++++|++|++++
T Consensus       179 i~th~~~~~~~~d~v~~l~~g~i~~  203 (207)
T cd03369         179 TIAHRLRTIIDYDKILVMDAGEVKE  203 (207)
T ss_pred             EEeCCHHHHhhCCEEEEEECCEEEe
Confidence            9999999986699999999999987

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.7e-37  Score=247.35  Aligned_cols=166  Identities=27%  Similarity=0.479  Sum_probs=135.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--Ccccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFATS   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~~t   86 (181)
                      +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.  +++.|
T Consensus        17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~~~t   95 (277)
T PRK13652         17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK-FVGLVFQNPDDQIFSPT   95 (277)
T ss_pred             CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh-heEEEecCccccccccc
Confidence            35999999999999999999999999999999999999999999999999886554444444 4999999974  55679


Q ss_pred             HHHHhhcCCC--CCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472         87 VRENIRYGDS--SVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL  131 (181)
Q Consensus        87 v~enl~~~~~--~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~  131 (181)
                      +.+|+.++..  ....    +.+.++++.+++..                             ++.|+||++||+.+++.
T Consensus        96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~  175 (277)
T PRK13652         96 VEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE  175 (277)
T ss_pred             HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            9999986421  1121    23455666655433                             35677999999999999


Q ss_pred             HHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        132 VQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       132 i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      +.++++++. + |.|||++||+++++.. |||+++|++|++++ .++.
T Consensus       176 l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~-~g~~  222 (277)
T PRK13652        176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVA-YGTV  222 (277)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEE-ECCH
Confidence            999998864 3 8999999999999854 99999999999987 3443

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=1.1e-37  Score=241.05  Aligned_cols=160  Identities=28%  Similarity=0.444  Sum_probs=130.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC--ChhhhccCcEEEEccCCCCcc-c
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL--DGTWLRGNVIGLINQEPVLFA-T   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~l~~-~   85 (181)
                      +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++...  ....+++ .++|+||++.+|+ .
T Consensus        13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~~   91 (213)
T cd03262          13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQ-KVGMVFQQFNLFPHL   91 (213)
T ss_pred             eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHh-cceEEecccccCCCC
Confidence            5699999999999999999999999999999999999999999999999987531  2233444 4999999999887 5


Q ss_pred             cHHHHhhcCC---CCCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         86 SVRENIRYGD---SSVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        86 tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                      |+.||+.++.   ....    .+++.++++.+++..                             ++.|+|+++||+.++
T Consensus        92 t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~  171 (213)
T cd03262          92 TVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV  171 (213)
T ss_pred             cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence            9999998752   1111    123445555554432                             356779999999999


Q ss_pred             HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeE
Q psy10472        130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI  169 (181)
Q Consensus       130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i  169 (181)
                      +.+.++++++. +++|+|++||+++.+.. ||++++|++|++
T Consensus       172 ~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         172 GEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999875 48999999999999865 999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=4e-37  Score=239.27  Aligned_cols=158  Identities=31%  Similarity=0.459  Sum_probs=130.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv   87 (181)
                      +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++..     .+ +.++|+||++.+|+ .|+
T Consensus        17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~-~~i~~v~q~~~~~~~~tv   90 (220)
T cd03293          17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PG-PDRGYVFQQDALLPWLTV   90 (220)
T ss_pred             eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----cc-CcEEEEecccccccCCCH
Confidence            469999999999999999999999999999999999999999999999998753     22 34999999999887 599


Q ss_pred             HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +||+.++..  ...    .+++.++++.+++..                             ++.|+||++||+.+++.+
T Consensus        91 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~  170 (220)
T cd03293          91 LDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL  170 (220)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHH
Confidence            999986421  111    233455565555432                             356779999999999999


Q ss_pred             HHHHHHh-c-CCcEEEEEecCchhhhc-CCeEEEEe--CCeEEee
Q psy10472        133 QAALESA-C-KGRTVLMIAHRLSTVQN-ADLIVVLQ--AGQIVEM  172 (181)
Q Consensus       133 ~~~l~~~-~-~~~tii~vtHd~~~~~~-~d~v~~l~--~G~i~~~  172 (181)
                      +++++++ . .++|||++||+++.+.. ||++++|+  +|++++.
T Consensus       171 ~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~  215 (220)
T cd03293         171 QEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE  215 (220)
T ss_pred             HHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEE
Confidence            9999876 3 38999999999998865 99999999  7999873

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=1.7e-37  Score=239.69  Aligned_cols=158  Identities=23%  Similarity=0.400  Sum_probs=130.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..    ..++ .++|+||++.+++. |+
T Consensus        13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~-~i~~~~q~~~~~~~~tv   87 (210)
T cd03269          13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARN-RIGYLPEERGLYPKMKV   87 (210)
T ss_pred             EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHc-cEEEeccCCcCCcCCcH
Confidence            469999999999999999999999999999999999999999999999987642    2333 49999999998875 99


Q ss_pred             HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +||+.+...  ...    .+.+.++++.+++..                             ++.|+|+++||+.+++.+
T Consensus        88 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~  167 (210)
T cd03269          88 IDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELL  167 (210)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence            999976421  111    233445555554432                             356789999999999999


Q ss_pred             HHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        133 QAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       133 ~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      .+.++++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus       168 ~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~  208 (210)
T cd03269         168 KDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL  208 (210)
T ss_pred             HHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence            99998864 58999999999999865 99999999999876

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.3e-37  Score=244.43  Aligned_cols=163  Identities=26%  Similarity=0.437  Sum_probs=132.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++...  ....+++ .++|+||++.
T Consensus        19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~   97 (253)
T PRK14242         19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRR-RVGMVFQKPN   97 (253)
T ss_pred             eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhh-cEEEEecCCC
Confidence            469999999999999999999999999999999999974     6899999999988542  2233444 4999999998


Q ss_pred             CccccHHHHhhcCCC---CCC----HHHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472         82 LFATSVRENIRYGDS---SVS----DEQIEEAAKLANAHG---------------------------------FISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~---~~~----~~~~~~~~~~~~~~~---------------------------------~~~~~P~  121 (181)
                      +|+.|+.||+.++..   ...    .+++.++++.+++..                                 ++.|+||
T Consensus        98 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt  177 (253)
T PRK14242         98 PFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPA  177 (253)
T ss_pred             CCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            888899999987421   111    233445555554411                                 3557799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++||+.++..+.++|+++.+++|||++|||++.+.. ||++++|++|++++.
T Consensus       178 ~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~  229 (253)
T PRK14242        178 SALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV  229 (253)
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999987668999999999999865 999999999999873

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.4e-37  Score=244.17  Aligned_cols=163  Identities=23%  Similarity=0.385  Sum_probs=135.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....++ .++|++|++.++. .|+
T Consensus        14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~~tv   92 (256)
T TIGR03873        14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR-RVALVEQDSDTAVPLTV   92 (256)
T ss_pred             EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhh-heEEecccCccCCCCCH
Confidence            46999999999999999999999999999999999999999999999999987766555454 4999999986654 599


Q ss_pred             HHHhhcCCCC-------C---CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472         88 RENIRYGDSS-------V---SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES  128 (181)
Q Consensus        88 ~enl~~~~~~-------~---~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~  128 (181)
                      .||+.++...       .   ..+++.++++.+++..                             ++.|+|+++||+.+
T Consensus        93 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~  172 (256)
T TIGR03873        93 RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA  172 (256)
T ss_pred             HHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence            9999875210       1   1223455666555432                             35577999999999


Q ss_pred             HHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        129 EKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       129 ~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +..+.++|+++. ++.|||++||+++.+.. ||++++|++|++++.
T Consensus       173 ~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  218 (256)
T TIGR03873       173 QLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAA  218 (256)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEe
Confidence            999999998875 48999999999999955 999999999999873

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=4.6e-37  Score=244.35  Aligned_cols=158  Identities=31%  Similarity=0.408  Sum_probs=132.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.     .+++ .++|+||++.+|+ .|+
T Consensus        25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~-~i~~v~q~~~l~~~~tv   98 (257)
T PRK11247         25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARE-DTRLMFQDARLLPWKKV   98 (257)
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhC-ceEEEecCccCCCCCcH
Confidence            46999999999999999999999999999999999999999999999998653     2333 4999999999887 499


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHHH
Q psy10472         88 RENIRYGDSSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALES  138 (181)
Q Consensus        88 ~enl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~~  138 (181)
                      +||+.++......+++.++++.+++..                             ++.|+||++||+.++..+.++|++
T Consensus        99 ~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~  178 (257)
T PRK11247         99 IDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIES  178 (257)
T ss_pred             HHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            999987632222344566666665533                             356779999999999999999987


Q ss_pred             h-c-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        139 A-C-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       139 ~-~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      + + .++|+|++|||++.+.. ||++++|++|++++.
T Consensus       179 ~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~  215 (257)
T PRK11247        179 LWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLD  215 (257)
T ss_pred             HHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence            6 3 38999999999999865 999999999999873

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.7e-37  Score=245.83  Aligned_cols=166  Identities=25%  Similarity=0.387  Sum_probs=136.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv   87 (181)
                      +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....++ .++|+||++.+|+ .|+
T Consensus        20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~~tv   98 (265)
T PRK10253         20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR-RIGLLAQNATTPGDITV   98 (265)
T ss_pred             EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh-heEEeeccCcCCCCCcH
Confidence            46999999999999999999999999999999999999999999999999887655555444 4999999998886 499


Q ss_pred             HHHhhcCCCC-------CC---HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472         88 RENIRYGDSS-------VS---DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES  128 (181)
Q Consensus        88 ~enl~~~~~~-------~~---~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~  128 (181)
                      +||+.++...       ..   .+.+.++++.+++..                             ++.|+||++||+.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~  178 (265)
T PRK10253         99 QELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH  178 (265)
T ss_pred             HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            9999875210       11   223455666655432                             35577999999999


Q ss_pred             HHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        129 EKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       129 ~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++.+.+.|.++.  .+.|+|++||+++.+.. ||++++|++|++++ .++.
T Consensus       179 ~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~  228 (265)
T PRK10253        179 QIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA-QGAP  228 (265)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCH
Confidence            999999998864  38999999999998855 99999999999987 3443

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-37  Score=244.61  Aligned_cols=163  Identities=25%  Similarity=0.444  Sum_probs=132.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECC--CCChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLK--HLDGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~--~~~~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++.  ..+...+++ .++|+||++.
T Consensus        17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~~~q~~~   95 (253)
T PRK14267         17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRR-EVGMVFQYPN   95 (253)
T ss_pred             eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhh-ceeEEecCCc
Confidence            5699999999999999999999999999999999999987     4999999999886  233334444 4999999999


Q ss_pred             Cccc-cHHHHhhcCCC--C--CC----HHHHHHHHHHhcccc---------------------------------ccccC
Q psy10472         82 LFAT-SVRENIRYGDS--S--VS----DEQIEEAAKLANAHG---------------------------------FISEF  119 (181)
Q Consensus        82 l~~~-tv~enl~~~~~--~--~~----~~~~~~~~~~~~~~~---------------------------------~~~~~  119 (181)
                      +|+. |+.||+.++..  .  ..    .+.+.++++.+++..                                 ++.|+
T Consensus        96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  175 (253)
T PRK14267         96 PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE  175 (253)
T ss_pred             cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            9875 99999986421  1  01    123455555554311                                 35577


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        120 PSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       120 P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      |+++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.
T Consensus       176 P~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  229 (253)
T PRK14267        176 PTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEV  229 (253)
T ss_pred             CCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence            99999999999999999987667999999999999865 999999999999873

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-37  Score=233.75  Aligned_cols=161  Identities=25%  Similarity=0.454  Sum_probs=134.5

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVR   88 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~   88 (181)
                      ++++||||+++.||+++|+|||||||||+||+|++++.|++|.|+++|.+....+ ...|++ ||.+|.+..++.. |++
T Consensus        16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~-IGVl~~e~glY~RlT~r   93 (245)
T COG4555          16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRK-IGVLFGERGLYARLTAR   93 (245)
T ss_pred             hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhh-cceecCCcChhhhhhHH
Confidence            4899999999999999999999999999999999999999999999999987654 445554 9999977788865 999


Q ss_pred             HHhhcCCC------CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHH
Q psy10472         89 ENIRYGDS------SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQ  133 (181)
Q Consensus        89 enl~~~~~------~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~  133 (181)
                      |||.|...      ...+.++++..+.+++.+                             ++.|+|+++||..+++.+.
T Consensus        94 Enl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~  173 (245)
T COG4555          94 ENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH  173 (245)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHH
Confidence            99998521      111334444444444332                             4567899999999999999


Q ss_pred             HHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        134 AALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       134 ~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +.+.+++ +|++||++||.+++++. ||+|+++++|+++..
T Consensus       174 dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~  214 (245)
T COG4555         174 DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE  214 (245)
T ss_pred             HHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEc
Confidence            9999876 49999999999999985 999999999999884

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=3.1e-37  Score=292.14  Aligned_cols=168  Identities=34%  Similarity=0.520  Sum_probs=151.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+++...+|++ |++|||+|.+|++|++
T Consensus      1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~-i~iVpQdp~LF~gTIr 1377 (1522)
T TIGR00957      1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK-ITIIPQDPVLFSGSLR 1377 (1522)
T ss_pred             cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhc-CeEECCCCcccCccHH
Confidence            469999999999999999999999999999999999999999999999999999999888876 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      +||.... ..++++++++++.+++.+                                        ++.|+||++||.++
T Consensus      1378 ~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~T 1456 (1522)
T TIGR00957      1378 MNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456 (1522)
T ss_pred             HHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence            9998432 466788888888776543                                        24466999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      .+.+.+.|++..+++|+|+|+|+++.+..||+|++|++|+++| .++++++
T Consensus      1457 e~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE-~G~~~eL 1506 (1522)
T TIGR00957      1457 DNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAE-FGAPSNL 1506 (1522)
T ss_pred             HHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence            9999999998778999999999999999999999999999999 5666544

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=1.8e-37  Score=240.09  Aligned_cols=154  Identities=25%  Similarity=0.419  Sum_probs=126.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC---ccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL---FAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l---~~~   85 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.     .+++ .++|+||++.+   ++.
T Consensus        12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~-~i~~v~q~~~~~~~~~~   85 (213)
T cd03235          12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERK-RIGYVPQRRSIDRDFPI   85 (213)
T ss_pred             EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHh-heEEeccccccccCCCC
Confidence            46999999999999999999999999999999999999999999999998753     2343 49999999876   346


Q ss_pred             cHHHHhhcCCCC-------C---CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCH
Q psy10472         86 SVRENIRYGDSS-------V---SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDN  126 (181)
Q Consensus        86 tv~enl~~~~~~-------~---~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~  126 (181)
                      |+.||+.++...       .   ..++++++++.+++..                             ++.|+||++||+
T Consensus        86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~  165 (213)
T cd03235          86 SVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDP  165 (213)
T ss_pred             cHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence            999999875321       1   1234556666655432                             355779999999


Q ss_pred             HHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCe
Q psy10472        127 ESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQ  168 (181)
Q Consensus       127 ~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~  168 (181)
                      .+++.+.+.++++. ++.|+|++|||++++.. ||++++|++|.
T Consensus       166 ~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~  209 (213)
T cd03235         166 KTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTV  209 (213)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcE
Confidence            99999999998865 68999999999999865 99999998863

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.9e-37  Score=253.55  Aligned_cols=161  Identities=27%  Similarity=0.415  Sum_probs=133.9

Q ss_pred             eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC----hhhhccCcEEEEccCCCCccc-cHH
Q psy10472         14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD----GTWLRGNVIGLINQEPVLFAT-SVR   88 (181)
Q Consensus        14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~r~~~i~~v~q~~~l~~~-tv~   88 (181)
                      ++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++....    ....++ .++|+||++.+|+. |++
T Consensus        16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~-~i~~v~q~~~l~~~~tv~   94 (352)
T PRK11144         16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR-RIGYVFQDARLFPHYKVR   94 (352)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC-CEEEEcCCcccCCCCcHH
Confidence            899999999999999999999999999999999999999999999875421    122333 49999999999975 999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHHHh
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALESA  139 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~~~  139 (181)
                      ||+.++......+++.++++.+++..                             ++.|+|+++||+.+++.+.+.|+++
T Consensus        95 enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l  174 (352)
T PRK11144         95 GNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERL  174 (352)
T ss_pred             HHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            99998744333455666777666543                             3557799999999999999999886


Q ss_pred             c-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        140 C-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       140 ~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      . + +.|+|+||||++++.. ||++++|++|++++ .+++
T Consensus       175 ~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~-~g~~  213 (352)
T PRK11144        175 AREINIPILYVSHSLDEILRLADRVVVLEQGKVKA-FGPL  213 (352)
T ss_pred             HHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE-ecCH
Confidence            4 3 7999999999998865 99999999999987 3443

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=7.2e-37  Score=236.37  Aligned_cols=155  Identities=31%  Similarity=0.443  Sum_probs=130.0

Q ss_pred             eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhh
Q psy10472         14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIR   92 (181)
Q Consensus        14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~   92 (181)
                      ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..  + +.++|+||++.+|+. |++||+.
T Consensus        16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~--~-~~i~~~~q~~~~~~~~tv~enl~   92 (211)
T cd03298          16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPA--D-RPVSMLFQENNLFAHLTVEQNVG   92 (211)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHh--H-ccEEEEecccccCCCCcHHHHHh
Confidence            99999999999999999999999999999999999999999999998655432  3 349999999998875 9999998


Q ss_pred             cCCCC------CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHH
Q psy10472         93 YGDSS------VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALE  137 (181)
Q Consensus        93 ~~~~~------~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~  137 (181)
                      ++...      ...+++.++++.+++..                             ++.|+|+++||+.+++.+.++++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~  172 (211)
T cd03298          93 LGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVL  172 (211)
T ss_pred             cccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            75321      11234556666655432                             35577999999999999999998


Q ss_pred             Hhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        138 SAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       138 ~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      ++.  .++|+|++||+++.+.. ||++++|++|++++
T Consensus       173 ~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~  209 (211)
T cd03298         173 DLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA  209 (211)
T ss_pred             HHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence            864  38999999999999865 99999999999876

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.9e-37  Score=243.94  Aligned_cols=163  Identities=28%  Similarity=0.446  Sum_probs=133.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC-------------hhhhccCcEEE
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD-------------GTWLRGNVIGL   75 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~-------------~~~~r~~~i~~   75 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++             ...+++ .++|
T Consensus        13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~-~i~~   91 (252)
T TIGR03005        13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRN-KIGM   91 (252)
T ss_pred             eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhh-CeEE
Confidence            56999999999999999999999999999999999999999999999999886542             122343 4999


Q ss_pred             EccCCCCcc-ccHHHHhhcCC---CCCC----HHHHHHHHHHhcccc-----------------------------cccc
Q psy10472         76 INQEPVLFA-TSVRENIRYGD---SSVS----DEQIEEAAKLANAHG-----------------------------FISE  118 (181)
Q Consensus        76 v~q~~~l~~-~tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~  118 (181)
                      +||++.+|+ .|+.||+.++.   ....    .+.+.++++.+++..                             ++.|
T Consensus        92 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  171 (252)
T TIGR03005        92 VFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFD  171 (252)
T ss_pred             EecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            999998886 59999998741   1111    223455565555432                             3567


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        119 FPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       119 ~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +|+++||+.++..+.++|+++. + +.|+|++||+++.+.. ||++++|++|++++.
T Consensus       172 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  228 (252)
T TIGR03005       172 EVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ  228 (252)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence            7999999999999999998864 3 8999999999999855 999999999999873

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=2.4e-37  Score=291.15  Aligned_cols=170  Identities=36%  Similarity=0.634  Sum_probs=151.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC----------------------------------------
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV----------------------------------------   48 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p----------------------------------------   48 (181)
                      +++|+|+||+|++|+++||+||||||||||+++|+|+++|                                        
T Consensus      1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265       1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred             CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            4699999999999999999999999999999999999998                                        


Q ss_pred             --------------CcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhcCCCCCCHHHHHHHHHHhcccc
Q psy10472         49 --------------SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHG  114 (181)
Q Consensus        49 --------------~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~  114 (181)
                                    ++|+|.+||.++.+++...+|++ ||||+|+|.||++|++|||.++.+..++++++++++.+++.+
T Consensus      1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~-i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~ 1339 (1466)
T PTZ00265       1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNL-FSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDE 1339 (1466)
T ss_pred             ccccccccccccCCCCCeEEECCEEHHhCCHHHHHhh-ccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHH
Confidence                          69999999999999998888876 999999999999999999999976677888888888776554


Q ss_pred             c----------------------------------------cccCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCc
Q psy10472        115 F----------------------------------------ISEFPSGALDNESEKLVQAALESAC--KGRTVLMIAHRL  152 (181)
Q Consensus       115 ~----------------------------------------~~~~P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~  152 (181)
                      +                                        +.|+||++||+++++.+.+.|....  +++|+|+|||++
T Consensus      1340 fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265       1340 FIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred             HHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH
Confidence            3                                        4466999999999999999998873  589999999999


Q ss_pred             hhhhcCCeEEEEeC----CeEEeecCCchhh
Q psy10472        153 STVQNADLIVVLQA----GQIVEMLGQHENT  179 (181)
Q Consensus       153 ~~~~~~d~v~~l~~----G~i~~~~~~~~~~  179 (181)
                      +.++.||+|++|++    |+++...++++++
T Consensus      1420 sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eL 1450 (1466)
T PTZ00265       1420 ASIKRSDKIVVFNNPDRTGSFVQAHGTHEEL 1450 (1466)
T ss_pred             HHHHhCCEEEEEeCCCCCCCEEEEecCHHHH
Confidence            99999999999999    8965326777654

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=4.5e-37  Score=290.93  Aligned_cols=168  Identities=31%  Similarity=0.485  Sum_probs=149.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      .++|+||||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|++ |+||||+|.+|++||+
T Consensus      1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~-I~iVpQdp~LF~gTIr 1401 (1560)
T PTZ00243       1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ-FSMIPQDPVLFDGTVR 1401 (1560)
T ss_pred             CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhc-ceEECCCCccccccHH
Confidence            359999999999999999999999999999999999999999999999999999998888876 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc-----------------------------------------ccccCCCCCCCHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG-----------------------------------------FISEFPSGALDNE  127 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~P~~~LD~~  127 (181)
                      +||..+. ..++++++++++.+++.+                                         ++.|+||++||++
T Consensus      1402 eNIdp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~ 1480 (1560)
T PTZ00243       1402 QNVDPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPA 1480 (1560)
T ss_pred             HHhCccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHH
Confidence            9998753 456777888887665433                                         2445699999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      +.+.+.+.|++..+++|+|+|+|+++.+..||+|++|++|++++ .++++++
T Consensus      1481 te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE-~Gt~~eL 1531 (1560)
T PTZ00243       1481 LDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAE-MGSPREL 1531 (1560)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence            99999999998777899999999999999999999999999999 5665544

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.2e-37  Score=244.11  Aligned_cols=157  Identities=29%  Similarity=0.455  Sum_probs=127.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCC--CChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKH--LDGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~--~~~~~~r~~~i~~v~q~~~   81 (181)
                      +.+|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  .+...+++ .++|+||++.
T Consensus        26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~  104 (269)
T PRK14259         26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRR-RIGMVFQQPN  104 (269)
T ss_pred             EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhh-ceEEEccCCc
Confidence            468999999999999999999999999999999999987     689999999998753  23344454 4999999999


Q ss_pred             CccccHHHHhhcCCCC--CC---HHHHHHHHHHhccc---------------------------------cccccCCCCC
Q psy10472         82 LFATSVRENIRYGDSS--VS---DEQIEEAAKLANAH---------------------------------GFISEFPSGA  123 (181)
Q Consensus        82 l~~~tv~enl~~~~~~--~~---~~~~~~~~~~~~~~---------------------------------~~~~~~P~~~  123 (181)
                      +|+.|++||+.++...  ..   .+.+.++++.+++.                                 -++.|+|+++
T Consensus       105 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~g  184 (269)
T PRK14259        105 PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSA  184 (269)
T ss_pred             cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence            8878999999875321  11   22334445544331                                 0356779999


Q ss_pred             CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeC
Q psy10472        124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQA  166 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~  166 (181)
                      ||+.+++.+.++|++++++.|||++||+++.+.. ||++++|++
T Consensus       185 LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~  228 (269)
T PRK14259        185 LDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA  228 (269)
T ss_pred             CCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence            9999999999999987667999999999999865 999999996

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.3e-37  Score=242.89  Aligned_cols=163  Identities=29%  Similarity=0.481  Sum_probs=133.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCC--CChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKH--LDGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~--~~~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  .+...+++ .++|+||++.
T Consensus        26 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~  104 (260)
T PRK10744         26 FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRA-KVGMVFQKPT  104 (260)
T ss_pred             eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhc-ceEEEecCCc
Confidence            468999999999999999999999999999999999986     589999999998753  22334454 4999999998


Q ss_pred             CccccHHHHhhcCCC---CCC----HHHHHHHHHHhccc----c-----------------------------ccccCCC
Q psy10472         82 LFATSVRENIRYGDS---SVS----DEQIEEAAKLANAH----G-----------------------------FISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~---~~~----~~~~~~~~~~~~~~----~-----------------------------~~~~~P~  121 (181)
                      +|+.|+++|+.++..   ...    .++++++++.+++.    .                             ++.|+|+
T Consensus       105 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt  184 (260)
T PRK10744        105 PFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPC  184 (260)
T ss_pred             cCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            888899999987521   111    13345566665531    1                             3567799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++||+.+++.+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.
T Consensus       185 ~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  236 (260)
T PRK10744        185 SALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEF  236 (260)
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999987667899999999999865 999999999999873

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=7.7e-37  Score=229.33  Aligned_cols=155  Identities=48%  Similarity=0.707  Sum_probs=129.2

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE   89 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e   89 (181)
                      ++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.+|+.|+.|
T Consensus        16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~~~~~~~~~t~~e   94 (171)
T cd03228          16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK-NIAYVPQDPFLFSGTIRE   94 (171)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHh-hEEEEcCCchhccchHHH
Confidence            6899999999999999999999999999999999999999999999999887665555554 499999999888889999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCe
Q psy10472         90 NIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ  168 (181)
Q Consensus        90 nl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~  168 (181)
                      |+ +  +....+++.-+...+ ...-++.|+|+++||+.++..+.++++++.+++|+|++||+++.+..||++++|++|+
T Consensus        95 ~l-L--S~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~  171 (171)
T cd03228          95 NI-L--SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR  171 (171)
T ss_pred             Hh-h--CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence            98 2  111223332222222 3345678999999999999999999988766799999999999986699999999984

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.5e-37  Score=246.70  Aligned_cols=166  Identities=28%  Similarity=0.471  Sum_probs=135.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh-hhhccCcEEEEccCCC--Cccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG-TWLRGNVIGLINQEPV--LFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~-~~~r~~~i~~v~q~~~--l~~~   85 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...++ .++|+||++.  ++..
T Consensus        23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~-~i~~v~q~~~~~~~~~  101 (280)
T PRK13633         23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRN-KAGMVFQNPDNQIVAT  101 (280)
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhh-heEEEecChhhhhccc
Confidence            469999999999999999999999999999999999999999999999998865332 33444 4999999984  5556


Q ss_pred             cHHHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHH
Q psy10472         86 SVRENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEK  130 (181)
Q Consensus        86 tv~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~  130 (181)
                      |+.+|+.|+...  ..    .++++++++.+++..                             ++.|+|+++||+.++.
T Consensus       102 ~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~  181 (280)
T PRK13633        102 IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRR  181 (280)
T ss_pred             cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence            899999886321  11    234556666665543                             3557799999999999


Q ss_pred             HHHHHHHHhc--CCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472        131 LVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       131 ~i~~~l~~~~--~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~  176 (181)
                      .+.+.++++.  .|.|||++||+++.+..||++++|++|+++.. ++.
T Consensus       182 ~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~-g~~  228 (280)
T PRK13633        182 EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVME-GTP  228 (280)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEe-cCH
Confidence            9999999864  38999999999999867999999999999873 443

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=6.3e-37  Score=242.32  Aligned_cols=163  Identities=27%  Similarity=0.433  Sum_probs=132.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC--------hhhhccCcEEEEccCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD--------GTWLRGNVIGLINQEP   80 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~--------~~~~r~~~i~~v~q~~   80 (181)
                      +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+        ...+++ .++|+||++
T Consensus        16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~-~i~~v~q~~   94 (250)
T PRK11264         16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQ-HVGFVFQNF   94 (250)
T ss_pred             eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhh-hEEEEecCc
Confidence            46999999999999999999999999999999999999999999999999875432        123343 499999999


Q ss_pred             CCcc-ccHHHHhhcCC---CCCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCC
Q psy10472         81 VLFA-TSVRENIRYGD---SSVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGA  123 (181)
Q Consensus        81 ~l~~-~tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~  123 (181)
                      .+|+ .|+.||+.++.   ....    .+.+.++++.+++..                             ++.|+||++
T Consensus        95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~  174 (250)
T PRK11264         95 NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSA  174 (250)
T ss_pred             ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            8887 59999997641   1111    123445555555432                             356779999


Q ss_pred             CCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        124 LDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ||+.+++.+.++++++. ++.|+|++||+++.+.. ||++++|++|++++.
T Consensus       175 LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~  225 (250)
T PRK11264        175 LDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ  225 (250)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence            99999999999998865 48999999999999865 999999999999873

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.1e-37  Score=245.93  Aligned_cols=163  Identities=28%  Similarity=0.450  Sum_probs=132.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC----hhhhccCcEEEEccCC--CC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD----GTWLRGNVIGLINQEP--VL   82 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~r~~~i~~v~q~~--~l   82 (181)
                      +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+    ...+++ .|+|+||++  .+
T Consensus        20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~-~i~~~~q~~~~~~   98 (280)
T PRK13649         20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRK-KVGLVFQFPESQL   98 (280)
T ss_pred             cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHh-heEEEeeChhhhh
Confidence            36999999999999999999999999999999999999999999999999886532    233444 499999997  56


Q ss_pred             ccccHHHHhhcCCC--CCCH----HHHHHHHHHhcccc------------------------------ccccCCCCCCCH
Q psy10472         83 FATSVRENIRYGDS--SVSD----EQIEEAAKLANAHG------------------------------FISEFPSGALDN  126 (181)
Q Consensus        83 ~~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~  126 (181)
                      |+.|++||+.++..  ....    +.+.++++.+++..                              ++.|+||++||+
T Consensus        99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~  178 (280)
T PRK13649         99 FEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP  178 (280)
T ss_pred             ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence            67799999986421  1111    22345555555531                              355779999999


Q ss_pred             HHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        127 ESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       127 ~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      .+++.+.+.|+++. +++|||++||+++.+.. ||++++|++|++++.
T Consensus       179 ~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  226 (280)
T PRK13649        179 KGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS  226 (280)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence            99999999998864 48999999999999865 999999999999873

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9e-37  Score=245.67  Aligned_cols=166  Identities=24%  Similarity=0.409  Sum_probs=135.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc---ceEEECCEECCCCChhhhccCcEEEEccCCC--Cc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS---GNITISGVDLKHLDGTWLRGNVIGLINQEPV--LF   83 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~---G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~   83 (181)
                      +++++++||+|++||+++|+||||||||||+++|+|+++|++   |+|.++|+++...+....++ .+||+||++.  ++
T Consensus        20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~-~ig~v~q~~~~~~~   98 (282)
T PRK13640         20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE-KVGIVFQNPDNQFV   98 (282)
T ss_pred             ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh-heEEEEECHHHhhc
Confidence            459999999999999999999999999999999999999998   89999999987655444444 4999999984  34


Q ss_pred             cccHHHHhhcCCC--CCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472         84 ATSVRENIRYGDS--SVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNES  128 (181)
Q Consensus        84 ~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~  128 (181)
                      +.|+.||+.++..  ....    +++.++++.+++..                             ++.|+|+++||+.+
T Consensus        99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~  178 (282)
T PRK13640         99 GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAG  178 (282)
T ss_pred             cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence            5699999987521  1222    23455666665543                             35567999999999


Q ss_pred             HHHHHHHHHHhc-C-CcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472        129 EKLVQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       129 ~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++.+.+.|+++. + |+|||++||+++.+..||++++|++|++++. ++.
T Consensus       179 ~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~-g~~  227 (282)
T PRK13640        179 KEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQ-GSP  227 (282)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEe-CCH
Confidence            999999998864 3 8999999999999867999999999999873 443

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.6e-37  Score=242.20  Aligned_cols=166  Identities=27%  Similarity=0.397  Sum_probs=133.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++...  +...+++ .++|+||++.
T Consensus        20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~   98 (254)
T PRK14273         20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRR-KIGMVFQTPN   98 (254)
T ss_pred             ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhh-ceEEEeeccc
Confidence            4699999999999999999999999999999999999997     489999999987532  2223444 4999999998


Q ss_pred             CccccHHHHhhcCCC--C-CC----HHHHHHHHHHhccc---------------------------------cccccCCC
Q psy10472         82 LFATSVRENIRYGDS--S-VS----DEQIEEAAKLANAH---------------------------------GFISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~---------------------------------~~~~~~P~  121 (181)
                      +|+.|++||+.++..  . ..    .+.+.++++.+++.                                 -++.|+|+
T Consensus        99 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt  178 (254)
T PRK14273         99 PFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPT  178 (254)
T ss_pred             cccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            887899999987531  1 11    22344455544431                                 03567799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++||+.++..++++|++++++.|+|++||+++++.. ||++++|++|++++ .++.
T Consensus       179 ~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~  233 (254)
T PRK14273        179 SALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE-ESST  233 (254)
T ss_pred             cccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCH
Confidence            999999999999999988668999999999999865 99999999999987 3443

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=7.2e-37  Score=243.10  Aligned_cols=163  Identities=25%  Similarity=0.383  Sum_probs=133.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC-------------hhhhccCcEEE
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD-------------GTWLRGNVIGL   75 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~-------------~~~~r~~~i~~   75 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+             ...+++ .++|
T Consensus        18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~   96 (257)
T PRK10619         18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRT-RLTM   96 (257)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhh-ceEE
Confidence            56999999999999999999999999999999999999999999999999875311             123343 4999


Q ss_pred             EccCCCCccc-cHHHHhhcCC---CCCC----HHHHHHHHHHhcccc------------------------------ccc
Q psy10472         76 INQEPVLFAT-SVRENIRYGD---SSVS----DEQIEEAAKLANAHG------------------------------FIS  117 (181)
Q Consensus        76 v~q~~~l~~~-tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~------------------------------~~~  117 (181)
                      +||++.+++. |++||+.++.   ....    .+++.++++.+++..                              ++.
T Consensus        97 v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  176 (257)
T PRK10619         97 VFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLF  176 (257)
T ss_pred             EecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9999999875 9999997631   1111    233455666655432                              345


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        118 EFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       118 ~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      |+||++||+.+++.+.++|+++. +|+|||+||||++.+.. |||+++|++|++++.
T Consensus       177 DEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  233 (257)
T PRK10619        177 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE  233 (257)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence            67999999999999999998875 48999999999999976 999999999999873

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=6.8e-37  Score=238.94  Aligned_cols=160  Identities=23%  Similarity=0.376  Sum_probs=132.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++ .++|+||++.+|+.|+.
T Consensus        20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~l~~~tv~   98 (225)
T PRK10247         20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ-QVSYCAQTPTLFGDTVY   98 (225)
T ss_pred             ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHh-ccEEEecccccccccHH
Confidence            56999999999999999999999999999999999999999999999999887666554454 49999999998888999


Q ss_pred             HHhhcCC----CCCCHHHHHHHHHHhcccc------------------------------ccccCCCCCCCHHHHHHHHH
Q psy10472         89 ENIRYGD----SSVSDEQIEEAAKLANAHG------------------------------FISEFPSGALDNESEKLVQA  134 (181)
Q Consensus        89 enl~~~~----~~~~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~~~~~~i~~  134 (181)
                      ||+.+..    .....+++.++++.+++..                              ++.|+||++||+.+++.+.+
T Consensus        99 enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~  178 (225)
T PRK10247         99 DNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE  178 (225)
T ss_pred             HHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            9997641    1112334556676666531                              35577999999999999999


Q ss_pred             HHHHhc--CCcEEEEEecCchhhhcCCeEEEEe--CCeE
Q psy10472        135 ALESAC--KGRTVLMIAHRLSTVQNADLIVVLQ--AGQI  169 (181)
Q Consensus       135 ~l~~~~--~~~tii~vtHd~~~~~~~d~v~~l~--~G~i  169 (181)
                      +++++.  .+.|+|++||+++.+..||++++|+  .|++
T Consensus       179 ~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~  217 (225)
T PRK10247        179 IIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEM  217 (225)
T ss_pred             HHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchH
Confidence            998864  3899999999999987799999995  4444

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.9e-37  Score=244.70  Aligned_cols=162  Identities=27%  Similarity=0.470  Sum_probs=133.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-Cc-ccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-LF-ATS   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~-~~t   86 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++. .| ..|
T Consensus        22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~-~i~~v~q~~~~~~~~~t  100 (271)
T PRK13632         22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRK-KIGIIFQNPDNQFIGAT  100 (271)
T ss_pred             ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhc-ceEEEEeCHHHhcCccc
Confidence            46999999999999999999999999999999999999999999999999987655445555 4999999984 44 469


Q ss_pred             HHHHhhcCCC--CCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472         87 VRENIRYGDS--SVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL  131 (181)
Q Consensus        87 v~enl~~~~~--~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~  131 (181)
                      ++||+.++..  ....    +.+.++++.+++..                             ++.|+|+++||+.+++.
T Consensus       101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~  180 (271)
T PRK13632        101 VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE  180 (271)
T ss_pred             HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            9999987521  1121    22445555555432                             35577999999999999


Q ss_pred             HHHHHHHhc-C-CcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472        132 VQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVE  171 (181)
Q Consensus       132 i~~~l~~~~-~-~~tii~vtHd~~~~~~~d~v~~l~~G~i~~  171 (181)
                      ++++++++. + ++|+|++||+++.+..||++++|++|++.+
T Consensus       181 l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~  222 (271)
T PRK13632        181 IKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIA  222 (271)
T ss_pred             HHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEE
Confidence            999998864 3 589999999999886799999999999986

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=9.8e-37  Score=230.14  Aligned_cols=159  Identities=38%  Similarity=0.542  Sum_probs=130.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC--hhhhccCcEEEEccCCCCccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD--GTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+  ...+++ .++|++|++.+|+. 
T Consensus        13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~~   91 (178)
T cd03229          13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRR-RIGMVFQDFALFPHL   91 (178)
T ss_pred             eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhh-cEEEEecCCccCCCC
Confidence            46999999999999999999999999999999999999999999999999887654  333444 59999999988865 


Q ss_pred             cHHHHhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeE
Q psy10472         86 SVRENIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLI  161 (181)
Q Consensus        86 tv~enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v  161 (181)
                      |++||+.+..+....+++.-+...+ ...-++.|+|+++||+.++..+.++++++. + +.|+|++||+++.+.. ||++
T Consensus        92 t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i  171 (178)
T cd03229          92 TVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRV  171 (178)
T ss_pred             CHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence            9999997642222233333233332 234467899999999999999999998864 4 7999999999999975 9999


Q ss_pred             EEEeCCe
Q psy10472        162 VVLQAGQ  168 (181)
Q Consensus       162 ~~l~~G~  168 (181)
                      ++|++|+
T Consensus       172 ~~l~~g~  178 (178)
T cd03229         172 VVLRDGK  178 (178)
T ss_pred             EEEeCCC
Confidence            9999884

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.1e-37  Score=244.36  Aligned_cols=162  Identities=28%  Similarity=0.420  Sum_probs=133.6

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-Ccc-ccH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-LFA-TSV   87 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~~-~tv   87 (181)
                      ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++. +|+ .|+
T Consensus        23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~~~~v  101 (269)
T PRK13648         23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK-HIGIVFQNPDNQFVGSIV  101 (269)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh-heeEEEeChHHhcccccH
Confidence            4899999999999999999999999999999999999999999999999987655555555 4999999985 454 589


Q ss_pred             HHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      .+|+.++...  ..    .+++.++++.+++..                             ++.|+|+++||+.+++.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l  181 (269)
T PRK13648        102 KYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL  181 (269)
T ss_pred             HHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence            9999875211  11    123455666655432                             355779999999999999


Q ss_pred             HHHHHHhc-C-CcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        133 QAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       133 ~~~l~~~~-~-~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      .+.++++. + |+|+|++||+++.+..||++++|++|++++.
T Consensus       182 ~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~  223 (269)
T PRK13648        182 LDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKE  223 (269)
T ss_pred             HHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEe
Confidence            99998864 3 8999999999998867999999999999873

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=7.4e-37  Score=240.79  Aligned_cols=167  Identities=28%  Similarity=0.323  Sum_probs=133.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC--CCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY--DVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~--~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+.  +|++|+|.++|+++...+.....+..++|+||++.+++. 
T Consensus        13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   92 (243)
T TIGR01978        13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV   92 (243)
T ss_pred             EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence            46999999999999999999999999999999999995  799999999999987665444333348999999998876 


Q ss_pred             cHHHHhhcCCCC---------CC----HHHHHHHHHHhccc-c------------------------------ccccCCC
Q psy10472         86 SVRENIRYGDSS---------VS----DEQIEEAAKLANAH-G------------------------------FISEFPS  121 (181)
Q Consensus        86 tv~enl~~~~~~---------~~----~~~~~~~~~~~~~~-~------------------------------~~~~~P~  121 (181)
                      |+.+|+.+....         ..    .+++.++++.+++. .                              ++.|+||
T Consensus        93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  172 (243)
T TIGR01978        93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEID  172 (243)
T ss_pred             CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence            999998753110         01    12344555555442 1                              2456799


Q ss_pred             CCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc--CCeEEEEeCCeEEeecCCc
Q psy10472        122 GALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~--~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++||+.+++.+.++|+++. +|.|||++|||++.+..  ||++++|++|++++ .++.
T Consensus       173 ~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~-~g~~  229 (243)
T TIGR01978       173 SGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK-SGDV  229 (243)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE-ecCH
Confidence            9999999999999998875 58999999999999864  79999999999987 3443

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.1e-37  Score=242.68  Aligned_cols=163  Identities=28%  Similarity=0.475  Sum_probs=132.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++...+  ...+++ .++|+||++.
T Consensus        25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~  103 (258)
T PRK14268         25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRK-NVGMVFQKPN  103 (258)
T ss_pred             eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhh-hEEEEecCCc
Confidence            4689999999999999999999999999999999999985     7999999999875432  223343 5999999998


Q ss_pred             CccccHHHHhhcCCC--CCCH----HHHHHHHHHhccc----c-----------------------------ccccCCCC
Q psy10472         82 LFATSVRENIRYGDS--SVSD----EQIEEAAKLANAH----G-----------------------------FISEFPSG  122 (181)
Q Consensus        82 l~~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~----~-----------------------------~~~~~P~~  122 (181)
                      +|+.|++||+.++..  ....    +.+.++++.+++.    .                             ++.|+||+
T Consensus       104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~  183 (258)
T PRK14268        104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTS  183 (258)
T ss_pred             cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence            888899999987521  1111    2345566655441    1                             35577999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        123 ALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       123 ~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +||+.++..+.++++++.+++|||++|||++.+.. ||++++|++|++++.
T Consensus       184 ~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  234 (258)
T PRK14268        184 ALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEF  234 (258)
T ss_pred             ccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            99999999999999887668999999999999865 999999999999873

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-36  Score=241.97  Aligned_cols=162  Identities=27%  Similarity=0.404  Sum_probs=132.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc-cccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF-ATSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~-~~tv   87 (181)
                      +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++ .++|+||++.++ ..|+
T Consensus        15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~~~~~~tv   93 (258)
T PRK13548         15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELAR-RRAVLPQHSSLSFPFTV   93 (258)
T ss_pred             eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhh-heEEEccCCcCCCCCCH
Confidence            56999999999999999999999999999999999999999999999999887655544444 499999999875 4599


Q ss_pred             HHHhhcCCCC--C----CHHHHHHHHHHhcc-----------------------------------ccccccCCCCCCCH
Q psy10472         88 RENIRYGDSS--V----SDEQIEEAAKLANA-----------------------------------HGFISEFPSGALDN  126 (181)
Q Consensus        88 ~enl~~~~~~--~----~~~~~~~~~~~~~~-----------------------------------~~~~~~~P~~~LD~  126 (181)
                      +||+.++...  .    ..+.+.++++.+++                                   .-++.|+||++||+
T Consensus        94 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~  173 (258)
T PRK13548         94 EEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL  173 (258)
T ss_pred             HHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCH
Confidence            9999875321  1    11223444433221                                   23456789999999


Q ss_pred             HHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        127 ESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       127 ~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      .+++.+.++|+++.  ++.|||++|||++.+.. ||++++|++|++++
T Consensus       174 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  221 (258)
T PRK13548        174 AHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA  221 (258)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe
Confidence            99999999998864  48999999999999865 99999999999987

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.8e-37  Score=250.01  Aligned_cols=168  Identities=27%  Similarity=0.446  Sum_probs=136.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+.+     |++|+|.|+|+++...  ....+++ .++|+||+++
T Consensus        95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~-~i~~v~q~~~  173 (329)
T PRK14257         95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRT-RIGMVFQKPT  173 (329)
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhc-cEEEEecCCc
Confidence            459999999999999999999999999999999999986     5799999999998632  2234454 4999999999


Q ss_pred             CccccHHHHhhcCCC--CCC-HH----HHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472         82 LFATSVRENIRYGDS--SVS-DE----QIEEAAKLANAHG---------------------------------FISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~--~~~-~~----~~~~~~~~~~~~~---------------------------------~~~~~P~  121 (181)
                      +|+.|++||+.|+..  ... .+    .+..+++.+++..                                 ++.|+|+
T Consensus       174 ~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPt  253 (329)
T PRK14257        174 PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPT  253 (329)
T ss_pred             cCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence            999999999997532  111 11    1344455544321                                 3557799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      ++||+.+...+.+.|+.+.+++|+|+|||+++.+.. ||||++|++|++++ .+.+++
T Consensus       254 s~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e-~g~~~~  310 (329)
T PRK14257        254 SALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE-AGETKT  310 (329)
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHH
Confidence            999999999999999887778999999999999876 99999999999998 454443

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=1e-36  Score=230.83  Aligned_cols=159  Identities=24%  Similarity=0.342  Sum_probs=128.4

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC---CCcc-cc
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP---VLFA-TS   86 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~---~l~~-~t   86 (181)
                      +++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....+++.++|+||++   .+++ .|
T Consensus        15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t   94 (182)
T cd03215          15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLS   94 (182)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCc
Confidence            8999999999999999999999999999999999999999999999999876653332233599999995   3555 59


Q ss_pred             HHHHhhcCCC--CCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeE
Q psy10472         87 VRENIRYGDS--SVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLI  161 (181)
Q Consensus        87 v~enl~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v  161 (181)
                      ++||+.++..  ....+++.-+...+ +..-++.|+|+++||+.+++.+.+.++++. ++.|+|++||+++.+.. ||++
T Consensus        95 ~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v  174 (182)
T cd03215          95 VAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRI  174 (182)
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence            9999987531  11123332222222 234467899999999999999999998864 48999999999998866 9999


Q ss_pred             EEEeCCeE
Q psy10472        162 VVLQAGQI  169 (181)
Q Consensus       162 ~~l~~G~i  169 (181)
                      ++|++|++
T Consensus       175 ~~l~~G~i  182 (182)
T cd03215         175 LVMYEGRI  182 (182)
T ss_pred             EEecCCcC
Confidence            99999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-36  Score=244.24  Aligned_cols=162  Identities=27%  Similarity=0.442  Sum_probs=133.4

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--CccccH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFATSV   87 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~~tv   87 (181)
                      ++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.  ++..|+
T Consensus        21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~-~i~~v~q~~~~~~~~~tv   99 (277)
T PRK13642         21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRR-KIGMVFQNPDNQFVGATV   99 (277)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhc-ceEEEEECHHHhhccCCH
Confidence            4899999999999999999999999999999999999999999999999987655444554 4999999984  445699


Q ss_pred             HHHhhcCCC--CCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDS--SVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~--~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      .||+.++..  ....    +++.++++.+++..                             ++.|+|+++||+.+++.+
T Consensus       100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l  179 (277)
T PRK13642        100 EDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI  179 (277)
T ss_pred             HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence            999987521  1122    23455555554432                             355779999999999999


Q ss_pred             HHHHHHhc-C-CcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        133 QAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       133 ~~~l~~~~-~-~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      .++++++. + |.|+|++||+++.+..||++++|++|++++.
T Consensus       180 ~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~  221 (277)
T PRK13642        180 MRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKE  221 (277)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence            99998874 3 8999999999999877999999999999873

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.7e-37  Score=243.70  Aligned_cols=163  Identities=30%  Similarity=0.490  Sum_probs=133.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++...  +...+++ .++|+||++.
T Consensus        32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~  110 (267)
T PRK14235         32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRA-RVGMVFQKPN  110 (267)
T ss_pred             EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhh-ceEEEecCCC
Confidence            4689999999999999999999999999999999999975     899999999988542  2333444 4999999999


Q ss_pred             CccccHHHHhhcCCC--CC--C----HHHHHHHHHHhcccc---------------------------------ccccCC
Q psy10472         82 LFATSVRENIRYGDS--SV--S----DEQIEEAAKLANAHG---------------------------------FISEFP  120 (181)
Q Consensus        82 l~~~tv~enl~~~~~--~~--~----~~~~~~~~~~~~~~~---------------------------------~~~~~P  120 (181)
                      +|+.|+.||+.++..  ..  .    .+++.++++.+++..                                 ++.|+|
T Consensus       111 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP  190 (267)
T PRK14235        111 PFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEP  190 (267)
T ss_pred             CCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            887899999987421  10  1    223455666655521                                 345679


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        121 SGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       121 ~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +++||+.+++.+.++|+++.++.|||++||+++.+.. ||++++|++|++++.
T Consensus       191 t~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~  243 (267)
T PRK14235        191 CSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEV  243 (267)
T ss_pred             CcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEe
Confidence            9999999999999999987667899999999999865 999999999999873

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=1.2e-36  Score=228.68  Aligned_cols=157  Identities=28%  Similarity=0.497  Sum_probs=129.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+++ .++|+||++.+|+. |+
T Consensus        13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~-~i~~~~q~~~~~~~~tv   90 (173)
T cd03230          13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKR-RIGYLPEEPSLYENLTV   90 (173)
T ss_pred             eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-Hhhhc-cEEEEecCCccccCCcH
Confidence            46899999999999999999999999999999999999999999999999886544 33444 49999999988875 99


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEE
Q psy10472         88 RENIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVL  164 (181)
Q Consensus        88 ~enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l  164 (181)
                      .||+.+.  ....+++.-+...+ +..-++.|+|+++||+.+++.+.++++++. +|.|+|++|||++++.. ||++++|
T Consensus        91 ~~~~~LS--~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l  168 (173)
T cd03230          91 RENLKLS--GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAIL  168 (173)
T ss_pred             HHHhhcC--HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            9998732  11223332222222 334567899999999999999999999864 57999999999999875 9999999


Q ss_pred             eCCeE
Q psy10472        165 QAGQI  169 (181)
Q Consensus       165 ~~G~i  169 (181)
                      ++|++
T Consensus       169 ~~g~i  173 (173)
T cd03230         169 NNGRI  173 (173)
T ss_pred             eCCCC
Confidence            99964

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.2e-37  Score=244.90  Aligned_cols=163  Identities=25%  Similarity=0.413  Sum_probs=130.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC--CChhhhccCcEEEEccCCC--Ccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH--LDGTWLRGNVIGLINQEPV--LFA   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~--~~~~~~r~~~i~~v~q~~~--l~~   84 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..  .+...+++ .++|+||++.  ++.
T Consensus        14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~~~~~~   92 (271)
T PRK13638         14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQ-QVATVFQDPEQQIFY   92 (271)
T ss_pred             cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHh-heEEEeeChhhcccc
Confidence            569999999999999999999999999999999999999999999999998742  12223443 4999999985  344


Q ss_pred             ccHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         85 TSVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        85 ~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                      .|+.+|+.++..  ...    .+.+.++++.+++..                             ++.|+||++||+.++
T Consensus        93 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~  172 (271)
T PRK13638         93 TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR  172 (271)
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence            589999976411  111    123345555555432                             356779999999999


Q ss_pred             HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ..+.++|+++. +|.|||++|||++.+.. ||++++|++|++++.
T Consensus       173 ~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~  217 (271)
T PRK13638        173 TQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTH  217 (271)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            99999998864 58999999999999865 999999999999873

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.3e-37  Score=245.06  Aligned_cols=166  Identities=28%  Similarity=0.471  Sum_probs=134.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC--ChhhhccCcEEEEccCC--CCcc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL--DGTWLRGNVIGLINQEP--VLFA   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~--~l~~   84 (181)
                      +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...  +...+++ .|+|+||++  .+++
T Consensus        15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~v~q~~~~~~~~   93 (275)
T PRK13639         15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRK-TVGIVFQNPDDQLFA   93 (275)
T ss_pred             CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHh-heEEEeeChhhhhcc
Confidence            4599999999999999999999999999999999999999999999999988522  1223444 499999997  3566


Q ss_pred             ccHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         85 TSVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        85 ~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                      .|+.||+.++..  ...    .+++.++++.+++.+                             ++.|+||++||+.++
T Consensus        94 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~  173 (275)
T PRK13639         94 PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA  173 (275)
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence            799999987421  111    133455666665533                             355779999999999


Q ss_pred             HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      ..+.+++.++. ++.|||++|||++.+.. ||++++|++|++++ .++.
T Consensus       174 ~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~~  221 (275)
T PRK13639        174 SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK-EGTP  221 (275)
T ss_pred             HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCH
Confidence            99999998875 48999999999999865 99999999999987 3443

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=3e-36  Score=239.59  Aligned_cols=165  Identities=35%  Similarity=0.536  Sum_probs=134.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.+|+.|++
T Consensus        34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~-~i~~v~q~~~l~~~tv~  112 (257)
T cd03288          34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS-RLSIILQDPILFSGSIR  112 (257)
T ss_pred             CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh-hEEEECCCCcccccHHH
Confidence            46999999999999999999999999999999999999999999999999987766555554 49999999998888999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcc----------------------------------------ccccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANA----------------------------------------HGFISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~P~~~LD~~~  128 (181)
                      +|+.+... .....+..+++.+++                                        .-++.|+|+++||+.+
T Consensus       113 ~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~  191 (257)
T cd03288         113 FNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT  191 (257)
T ss_pred             HhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence            99875422 122222222221111                                        1135577999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++.+.++++.+.++.|+|++||+++.+..||++++|++|++++ .++.
T Consensus       192 ~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~-~g~~  238 (257)
T cd03288         192 ENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVE-CDTP  238 (257)
T ss_pred             HHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEE-eCCH
Confidence            9999999988767899999999999987799999999999987 3443

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=1.7e-36  Score=261.78  Aligned_cols=166  Identities=27%  Similarity=0.428  Sum_probs=138.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +.+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.++|+++...+....+++.++|+||++.+++. |+
T Consensus        24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv  103 (510)
T PRK15439         24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSV  103 (510)
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcH
Confidence            46899999999999999999999999999999999999999999999999987665544444459999999988875 99


Q ss_pred             HHHhhcCCCCC--CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472         88 RENIRYGDSSV--SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAAL  136 (181)
Q Consensus        88 ~enl~~~~~~~--~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l  136 (181)
                      +||+.++....  ..+++.++++.+++..                             ++.|+||++||+.+++.+.++|
T Consensus       104 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l  183 (510)
T PRK15439        104 KENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRI  183 (510)
T ss_pred             HHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence            99998864221  1234555666655532                             3567799999999999999999


Q ss_pred             HHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472        137 ESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ  175 (181)
Q Consensus       137 ~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~  175 (181)
                      +++. +|+|||++|||++.+.. ||++++|++|++++ .++
T Consensus       184 ~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~-~g~  223 (510)
T PRK15439        184 RELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL-SGK  223 (510)
T ss_pred             HHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecC
Confidence            8864 58999999999999865 99999999999987 343

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-36  Score=239.41  Aligned_cols=163  Identities=24%  Similarity=0.380  Sum_probs=131.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC---C---ChhhhccCcEEEEccCCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH---L---DGTWLRGNVIGLINQEPVL   82 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~---~---~~~~~r~~~i~~v~q~~~l   82 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..   .   ....+++ .++|+||++.+
T Consensus        15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~-~i~~~~q~~~~   93 (242)
T PRK11124         15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRR-NVGMVFQQYNL   93 (242)
T ss_pred             eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHh-heEEEecCccc
Confidence            469999999999999999999999999999999999999999999999998631   1   1123344 49999999998


Q ss_pred             ccc-cHHHHhhcCC---CCCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCC
Q psy10472         83 FAT-SVRENIRYGD---SSVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALD  125 (181)
Q Consensus        83 ~~~-tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD  125 (181)
                      |+. |+.||+.+..   ....    .+++.++++.+++..                             ++.|+|+++||
T Consensus        94 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD  173 (242)
T PRK11124         94 WPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD  173 (242)
T ss_pred             cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCC
Confidence            875 9999997421   1111    223444555554432                             35677999999


Q ss_pred             HHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        126 NESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       126 ~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +.+++.+.++++++. +++|+|++||+++.+.. ||++++|++|++++.
T Consensus       174 ~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~  222 (242)
T PRK11124        174 PEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ  222 (242)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence            999999999998875 48999999999999865 999999999999873

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=2.5e-36  Score=235.58  Aligned_cols=161  Identities=30%  Similarity=0.407  Sum_probs=129.8

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---hhhccCcEEEEccCC--CCcc
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWLRGNVIGLINQEP--VLFA   84 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~~i~~v~q~~--~l~~   84 (181)
                      ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.   ..+++ .++|+||++  .+++
T Consensus        19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~~   97 (228)
T cd03257          19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRK-EIQMVFQDPMSSLNP   97 (228)
T ss_pred             eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhc-cEEEEecCchhhcCC
Confidence            68999999999999999999999999999999999999999999999999876553   23343 599999998  3454


Q ss_pred             -ccHHHHhhcCCC----CCCHH---H-HHHHHHHhccc-c-----------------------------ccccCCCCCCC
Q psy10472         85 -TSVRENIRYGDS----SVSDE---Q-IEEAAKLANAH-G-----------------------------FISEFPSGALD  125 (181)
Q Consensus        85 -~tv~enl~~~~~----~~~~~---~-~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD  125 (181)
                       .|+++|+.++..    ....+   . ..++++.+++. .                             ++.|+||++||
T Consensus        98 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD  177 (228)
T cd03257          98 RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD  177 (228)
T ss_pred             cCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence             599999975311    11111   1 12455555542 1                             35577999999


Q ss_pred             HHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        126 NESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       126 ~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      +.+++.+.+.++++. + |.|||++||+++.+.. ||++++|++|++++
T Consensus       178 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~  226 (228)
T cd03257         178 VSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE  226 (228)
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence            999999999998864 3 8999999999999875 99999999999876

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=8.8e-37  Score=264.40  Aligned_cols=155  Identities=40%  Similarity=0.641  Sum_probs=139.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+++...+|++ ++||+|++.+|++|++
T Consensus       335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~-i~~v~Q~~~lf~~ti~  413 (529)
T TIGR02857       335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ-IAWVPQHPFLFAGTIA  413 (529)
T ss_pred             cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh-eEEEcCCCcccCcCHH
Confidence            469999999999999999999999999999999999999999999999999999888888765 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      ||+.++.+..+++++.++++.+++.+                                        ++.|+||++||+++
T Consensus       414 ~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~  493 (529)
T TIGR02857       414 ENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET  493 (529)
T ss_pred             HHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence            99999865556777778877665543                                        24466999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEE
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL  164 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l  164 (181)
                      ++.+.+.+....+++|+|+|||+++.+..||+|++|
T Consensus       494 ~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l  529 (529)
T TIGR02857       494 EALVTEALRALAQGRTVLLVTHRLALAERADRIVVL  529 (529)
T ss_pred             HHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence            999999998877789999999999999889999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=1.7e-36  Score=241.98  Aligned_cols=166  Identities=27%  Similarity=0.382  Sum_probs=134.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCC--Cc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPV--LF   83 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~--l~   83 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...   +++ .++|+||++.  ++
T Consensus        24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~-~i~~v~q~~~~~~~  102 (265)
T TIGR02769        24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRR-DVQLVFQDSPSAVN  102 (265)
T ss_pred             eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhh-ceEEEecChhhhcC
Confidence            56999999999999999999999999999999999999999999999999987655432   343 4999999973  45


Q ss_pred             c-ccHHHHhhcCC---CCC----CHHHHHHHHHHhccc-c-----------------------------ccccCCCCCCC
Q psy10472         84 A-TSVRENIRYGD---SSV----SDEQIEEAAKLANAH-G-----------------------------FISEFPSGALD  125 (181)
Q Consensus        84 ~-~tv~enl~~~~---~~~----~~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD  125 (181)
                      + .|+.||+.++.   ...    ..+++.++++.+++. .                             ++.|+|+++||
T Consensus       103 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD  182 (265)
T TIGR02769       103 PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD  182 (265)
T ss_pred             CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            4 49999986531   111    123455666666653 2                             35577999999


Q ss_pred             HHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        126 NESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       126 ~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      +.+++.+.+.|+++. + |+|||++|||++.+.. ||++++|++|++++ .++.
T Consensus       183 ~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~  235 (265)
T TIGR02769       183 MVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE-ECDV  235 (265)
T ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE-ECCH
Confidence            999999999998864 3 8999999999999965 99999999999987 3443

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-36  Score=248.25  Aligned_cols=163  Identities=28%  Similarity=0.359  Sum_probs=134.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCC--CCc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEP--VLF   83 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~--~l~   83 (181)
                      ..+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..++..   .+|+ .|+||||++  .++
T Consensus        28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~-~i~~v~Q~~~~~l~  106 (327)
T PRK11308         28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQ-KIQIVFQNPYGSLN  106 (327)
T ss_pred             eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhC-CEEEEEcCchhhcC
Confidence            4689999999999999999999999999999999999999999999999999877643   2444 499999998  466


Q ss_pred             cc-cHHHHhhcCC---CCCC----HHHHHHHHHHhcccc------------------------------ccccCCCCCCC
Q psy10472         84 AT-SVRENIRYGD---SSVS----DEQIEEAAKLANAHG------------------------------FISEFPSGALD  125 (181)
Q Consensus        84 ~~-tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD  125 (181)
                      +. |+.+++.+..   ....    .+++.++++.+++..                              ++.|+||++||
T Consensus       107 p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD  186 (327)
T PRK11308        107 PRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD  186 (327)
T ss_pred             CccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCC
Confidence            64 9998886421   1111    234566666666531                              35677999999


Q ss_pred             HHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        126 NESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       126 ~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +.++..++++|.++.  .|.|+|+||||++.+.. ||+|++|++|++++.
T Consensus       187 ~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~  236 (327)
T PRK11308        187 VSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK  236 (327)
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            999999999998864  38999999999999976 999999999999984

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=5.2e-38  Score=235.58  Aligned_cols=172  Identities=20%  Similarity=0.318  Sum_probs=142.1

Q ss_pred             cccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc
Q psy10472          6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         6 ~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~   85 (181)
                      .+.++|+++|||+|++||+++|+|||||||||.+.++.|+.+|++|+|.++|.+++.++.....+..|||+||++.+|..
T Consensus        14 y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~   93 (243)
T COG1137          14 YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRK   93 (243)
T ss_pred             hCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhc
Confidence            34578999999999999999999999999999999999999999999999999999998766555679999999999976


Q ss_pred             -cHHHHhhcCCC----CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHH
Q psy10472         86 -SVRENIRYGDS----SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNE  127 (181)
Q Consensus        86 -tv~enl~~~~~----~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~  127 (181)
                       ||+|||.....    ...    +.+++..++.+.+..                             ++.|+||+++||.
T Consensus        94 LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPi  173 (243)
T COG1137          94 LTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI  173 (243)
T ss_pred             CcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCch
Confidence             99999975421    111    122334554443322                             3567899999999


Q ss_pred             HHHHHHHHHHHhc-CCcEEEEEecCchhh-hcCCeEEEEeCCeEEeecCCchh
Q psy10472        128 SEKLVQAALESAC-KGRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       128 ~~~~i~~~l~~~~-~~~tii~vtHd~~~~-~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      +...+.++++.++ +|..|+++-|+..+. ..|||.+++.+|++.. .+.+++
T Consensus       174 aV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla-~G~p~e  225 (243)
T COG1137         174 AVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLA-EGSPEE  225 (243)
T ss_pred             hHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEe-cCCHHH
Confidence            9999999999875 599999999999876 4599999999999998 465543

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.2e-36  Score=255.21  Aligned_cols=171  Identities=26%  Similarity=0.330  Sum_probs=143.4

Q ss_pred             CccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472          4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF   83 (181)
Q Consensus         4 ~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~   83 (181)
                      +.++..++|++|||++.+||+++|+|.||||||||+|+|+|.++|++|+|.++|+.+...++.+.+...|+.|+|+..++
T Consensus        16 K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~   95 (500)
T COG1129          16 KSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLV   95 (500)
T ss_pred             EEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhcc
Confidence            34455689999999999999999999999999999999999999999999999999987787777777899999999999


Q ss_pred             cc-cHHHHhhcCCCCC------C----HHHHHHHHHHhcc-----------------------------ccccccCCCCC
Q psy10472         84 AT-SVRENIRYGDSSV------S----DEQIEEAAKLANA-----------------------------HGFISEFPSGA  123 (181)
Q Consensus        84 ~~-tv~enl~~~~~~~------~----~~~~~~~~~~~~~-----------------------------~~~~~~~P~~~  123 (181)
                      +. ||.||+.++....      +    .++..++++.+++                             .-++.|+||++
T Consensus        96 p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaa  175 (500)
T COG1129          96 PNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAA  175 (500)
T ss_pred             CCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            86 9999998874221      1    1223344444433                             11467889999


Q ss_pred             CCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecC
Q psy10472        124 LDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLG  174 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~  174 (181)
                      |+....+.+++++++++ +|.++|+|||.++++.. ||||.+|+||+.+....
T Consensus       176 Lt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~  228 (500)
T COG1129         176 LTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP  228 (500)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence            99999999999999875 69999999999999966 99999999999987433

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-36  Score=239.94  Aligned_cols=166  Identities=26%  Similarity=0.406  Sum_probs=132.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC--C---CcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD--V---SSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~--p---~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|+++...  +...+++ .++|+||++.
T Consensus        25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~v~q~~~  103 (259)
T PRK14274         25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRK-NIGMVFQKGN  103 (259)
T ss_pred             eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhh-ceEEEecCCc
Confidence            469999999999999999999999999999999999987  3   599999999987532  2233444 4999999999


Q ss_pred             CccccHHHHhhcCCCC---CCH----HHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472         82 LFATSVRENIRYGDSS---VSD----EQIEEAAKLANAHG---------------------------------FISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~~---~~~----~~~~~~~~~~~~~~---------------------------------~~~~~P~  121 (181)
                      +|+.|++||+.++...   ...    +++.++++.+++..                                 ++.|+||
T Consensus       104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt  183 (259)
T PRK14274        104 PFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPT  183 (259)
T ss_pred             ccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            8888999999875211   111    22344455544311                                 3557799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++. +++
T Consensus       184 ~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~-g~~  238 (259)
T PRK14274        184 SALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVEC-NDT  238 (259)
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE-CCH
Confidence            999999999999999987668999999999999865 999999999999873 443

>KOG0055|consensus

Probab=100.00  E-value=7.5e-37  Score=276.34  Aligned_cols=174  Identities=56%  Similarity=0.891  Sum_probs=158.8

Q ss_pred             CccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472          4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF   83 (181)
Q Consensus         4 ~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~   83 (181)
                      |.++..+||+|+||+|++|+.+||+|||||||||.+.+|-++|.|++|.|.+||+++.+++..++|++ +|.|.|+|.||
T Consensus       998 PsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~-i~lVsQEP~LF 1076 (1228)
T KOG0055|consen  998 PTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQ-IGLVSQEPVLF 1076 (1228)
T ss_pred             CCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHh-cceeccCchhh
Confidence            44566789999999999999999999999999999999999999999999999999999999999986 99999999999


Q ss_pred             cccHHHHhhcCCCCCCHHHHHHHHHHhccccccc----------------------------------------cCCCCC
Q psy10472         84 ATSVRENIRYGDSSVSDEQIEEAAKLANAHGFIS----------------------------------------EFPSGA  123 (181)
Q Consensus        84 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~P~~~  123 (181)
                      +.|++|||.||....+.+++.+|++.+++..|+.                                        |+.|++
T Consensus      1077 ~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSA 1156 (1228)
T KOG0055|consen 1077 NGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSA 1156 (1228)
T ss_pred             cccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchh
Confidence            9999999999954468889999998887666543                                        446679


Q ss_pred             CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      ||.++++.+.+.|.+...|+|.|+|.|.++.++.||.|+++++|+|+| .|+++++
T Consensus      1157 LDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE-~GtH~~L 1211 (1228)
T KOG0055|consen 1157 LDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVE-QGTHDEL 1211 (1228)
T ss_pred             hhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEe-cccHHHH
Confidence            999999999999999989999999999999999999999999999999 6877654

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=1.5e-36  Score=236.91  Aligned_cols=159  Identities=43%  Similarity=0.619  Sum_probs=129.8

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE   89 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e   89 (181)
                      ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....++ .++|+||++.+|+.|++|
T Consensus        28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~~~q~~~l~~~tv~~  106 (226)
T cd03248          28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS-KVSLVGQEPVLFARSLQD  106 (226)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh-hEEEEecccHHHhhhHHH
Confidence            5999999999999999999999999999999999999999999999998876554444444 499999999888889999


Q ss_pred             HhhcCCCCCCHHH---------HHHHHHHh--cccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         90 NIRYGDSSVSDEQ---------IEEAAKLA--NAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        90 nl~~~~~~~~~~~---------~~~~~~~~--~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                      |+.++........         ++++++.+  ++..                             ++.|+|+++||+.++
T Consensus       107 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~  186 (226)
T cd03248         107 NIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE  186 (226)
T ss_pred             HhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            9987643222111         12233333  2221                             355779999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeE
Q psy10472        130 KLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQI  169 (181)
Q Consensus       130 ~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i  169 (181)
                      +.+.+.++.+.++.|+|++||+++++..||++++|++|++
T Consensus       187 ~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i  226 (226)
T cd03248         187 QQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI  226 (226)
T ss_pred             HHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence            9999999987667999999999999867999999999874

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-36  Score=241.50  Aligned_cols=163  Identities=26%  Similarity=0.391  Sum_probs=131.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+.+     |++|+|.++|+++...+  ...+++ .++|+||++.
T Consensus        34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~  112 (268)
T PRK14248         34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRR-EIGMVFQKPN  112 (268)
T ss_pred             ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhc-cEEEEecCCc
Confidence            569999999999999999999999999999999999864     79999999999885422  223344 4999999999


Q ss_pred             CccccHHHHhhcCCC--C-CC----HHHHHHHHHHhccc---------------------------------cccccCCC
Q psy10472         82 LFATSVRENIRYGDS--S-VS----DEQIEEAAKLANAH---------------------------------GFISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~---------------------------------~~~~~~P~  121 (181)
                      +|+.|++||+.++..  . ..    .+.+.++++.+++.                                 -++.|+||
T Consensus       113 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt  192 (268)
T PRK14248        113 PFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPA  192 (268)
T ss_pred             cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence            888899999986421  1 11    12234444443331                                 13567799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++||+.+++.+.++++++.++.|||++||+++.+.. ||++++|++|++++.
T Consensus       193 ~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~  244 (268)
T PRK14248        193 SALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEY  244 (268)
T ss_pred             cccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999987667899999999998865 999999999999873

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-36  Score=239.34  Aligned_cols=163  Identities=28%  Similarity=0.458  Sum_probs=132.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~   81 (181)
                      +.+|+++||+|++||+++|+||||||||||+++|+|+.+|     ++|+|.++|+++...+  ....++ .++|+||++.
T Consensus        17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~~~q~~~   95 (251)
T PRK14270         17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRK-RVGMVFQKPN   95 (251)
T ss_pred             eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHh-heEEEecCCC
Confidence            4689999999999999999999999999999999999875     7999999999885432  223343 4999999999


Q ss_pred             CccccHHHHhhcCCC--CC-C----HHHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472         82 LFATSVRENIRYGDS--SV-S----DEQIEEAAKLANAHG---------------------------------FISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~--~~-~----~~~~~~~~~~~~~~~---------------------------------~~~~~P~  121 (181)
                      +|+.|++||+.++..  .. .    .+++.++++.+++..                                 ++.|+|+
T Consensus        96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~  175 (251)
T PRK14270         96 PFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPT  175 (251)
T ss_pred             cCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            888899999987521  11 1    123445555554310                                 3557799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++||+.++..+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.
T Consensus       176 ~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~  227 (251)
T PRK14270        176 SALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEF  227 (251)
T ss_pred             ccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEe
Confidence            999999999999999887657899999999999865 999999999999874

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.3e-36  Score=231.35  Aligned_cols=171  Identities=24%  Similarity=0.328  Sum_probs=142.2

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +..++|++|||++++||+++|+||||+|||||||+|+|+.+|.+|+|.|+|++++..++.+..+..|+||||...+|+. 
T Consensus        14 G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~L   93 (237)
T COG0410          14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRL   93 (237)
T ss_pred             cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhC
Confidence            3357999999999999999999999999999999999999999999999999999998877666779999999999985 


Q ss_pred             cHHHHhhcCCCCCC----HH-HHHHHHHHh------------------------------ccccccccCCCCCCCHHHHH
Q psy10472         86 SVRENIRYGDSSVS----DE-QIEEAAKLA------------------------------NAHGFISEFPSGALDNESEK  130 (181)
Q Consensus        86 tv~enl~~~~~~~~----~~-~~~~~~~~~------------------------------~~~~~~~~~P~~~LD~~~~~  130 (181)
                      ||+||+.++.....    .+ .++++.+++                              ...-++.|+|+.+|-|.-.+
T Consensus        94 TVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~  173 (237)
T COG0410          94 TVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE  173 (237)
T ss_pred             cHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHH
Confidence            99999998632111    11 133333322                              11225678999999999999


Q ss_pred             HHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472        131 LVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       131 ~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      ++.+.+++++ + |.||++|.++...+.. +||.++|++|+++. .++.++
T Consensus       174 ~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~-~G~~~e  223 (237)
T COG0410         174 EIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVL-SGTAAE  223 (237)
T ss_pred             HHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEE-ecCHHH
Confidence            9999999876 3 7899999999999865 99999999999998 455443

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.8e-36  Score=240.28  Aligned_cols=164  Identities=27%  Similarity=0.429  Sum_probs=132.7

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCC--ChhhhccCcEEEEccCC
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHL--DGTWLRGNVIGLINQEP   80 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~   80 (181)
                      .+++|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++...  +....++ .++|+||++
T Consensus        32 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~v~q~~  110 (267)
T PRK14237         32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRK-HIGMVFQRP  110 (267)
T ss_pred             CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhc-ceEEEecCC
Confidence            3579999999999999999999999999999999999996     5899999999988532  2223444 499999999


Q ss_pred             CCccccHHHHhhcCCCC---CC----HHHHHHHHHHhcccc---------------------------------ccccCC
Q psy10472         81 VLFATSVRENIRYGDSS---VS----DEQIEEAAKLANAHG---------------------------------FISEFP  120 (181)
Q Consensus        81 ~l~~~tv~enl~~~~~~---~~----~~~~~~~~~~~~~~~---------------------------------~~~~~P  120 (181)
                      .+|+.|++||+.++...   ..    .+++.++++.+++..                                 ++.|+|
T Consensus       111 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP  190 (267)
T PRK14237        111 NPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEP  190 (267)
T ss_pred             ccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            88888999999875211   11    123344455544321                                 355779


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        121 SGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       121 ~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +++||+.++..+.++|+++.++.|+|++||+++.+.. ||++++|++|++++.
T Consensus       191 t~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~  243 (267)
T PRK14237        191 ASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEY  243 (267)
T ss_pred             cccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEe
Confidence            9999999999999999987667999999999999855 999999999999873

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-36  Score=243.47  Aligned_cols=162  Identities=23%  Similarity=0.456  Sum_probs=130.6

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC----C-ChhhhccCcEEEEccCC--CC
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH----L-DGTWLRGNVIGLINQEP--VL   82 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~----~-~~~~~r~~~i~~v~q~~--~l   82 (181)
                      ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..    . +...+++ .++|++|++  .+
T Consensus        25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~-~i~~v~q~~~~~~  103 (289)
T PRK13645         25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRK-EIGLVFQFPEYQL  103 (289)
T ss_pred             ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhc-cEEEEEeCcchhh
Confidence            49999999999999999999999999999999999999999999999998742    1 1233444 499999997  35


Q ss_pred             ccccHHHHhhcCCC--CCCH----HHHHHHHHHhccc-c-----------------------------ccccCCCCCCCH
Q psy10472         83 FATSVRENIRYGDS--SVSD----EQIEEAAKLANAH-G-----------------------------FISEFPSGALDN  126 (181)
Q Consensus        83 ~~~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~  126 (181)
                      ++.|+.||+.++..  ....    +.+.++++.+++. +                             ++.|+|+++||+
T Consensus       104 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~  183 (289)
T PRK13645        104 FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP  183 (289)
T ss_pred             hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence            56799999987531  1111    2334555555552 2                             355779999999


Q ss_pred             HHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        127 ESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       127 ~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      .+++.++++|+++.  .++|||++||+++.+.. ||++++|++|++++.
T Consensus       184 ~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~  232 (289)
T PRK13645        184 KGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI  232 (289)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            99999999998764  38999999999998865 999999999999873

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-36  Score=261.47  Aligned_cols=163  Identities=25%  Similarity=0.380  Sum_probs=135.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+....+++.++|+||++.+++. |+
T Consensus        18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv   97 (510)
T PRK09700         18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTV   97 (510)
T ss_pred             eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcH
Confidence            46899999999999999999999999999999999999999999999999987665443333459999999988875 99


Q ss_pred             HHHhhcCCC------CC---C----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCC
Q psy10472         88 RENIRYGDS------SV---S----DEQIEEAAKLANAHG-----------------------------FISEFPSGALD  125 (181)
Q Consensus        88 ~enl~~~~~------~~---~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD  125 (181)
                      +||+.++..      ..   .    .+++.++++.+++..                             ++.|+||++||
T Consensus        98 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD  177 (510)
T PRK09700         98 LENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLT  177 (510)
T ss_pred             HHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence            999987531      10   1    123455666665533                             35677999999


Q ss_pred             HHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        126 NESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       126 ~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      +.++..++++|++++ +|+|||+||||++.+.. ||++++|++|+++.
T Consensus       178 ~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~  225 (510)
T PRK09700        178 NKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVC  225 (510)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEee
Confidence            999999999998864 58999999999999965 99999999999976

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.6e-36  Score=232.34  Aligned_cols=159  Identities=31%  Similarity=0.483  Sum_probs=131.2

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVR   88 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~   88 (181)
                      ..+.++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+  ..++ .++|+||++.+|+. |+.
T Consensus        12 ~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~-~i~~v~q~~~~~~~~t~~   88 (213)
T TIGR01277        12 HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQR-PVSMLFQENNLFAHLTVR   88 (213)
T ss_pred             CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhcc-ceEEEeccCccCCCCcHH
Confidence            3578999999999999999999999999999999999999999999999876433  2333 49999999998875 999


Q ss_pred             HHhhcCCC---C---CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHH
Q psy10472         89 ENIRYGDS---S---VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQ  133 (181)
Q Consensus        89 enl~~~~~---~---~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~  133 (181)
                      ||+.++..   .   ...+++.++++.+++..                             ++.|+||++||+.++..+.
T Consensus        89 en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~  168 (213)
T TIGR01277        89 QNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEML  168 (213)
T ss_pred             HHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence            99976421   1   11234555666655432                             3557799999999999999


Q ss_pred             HHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        134 AALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       134 ~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      ++++++. + +.|+|+|||+++++.. ||++++|++|++++
T Consensus       169 ~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~  209 (213)
T TIGR01277       169 ALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV  209 (213)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence            9998864 3 7999999999999865 99999999999987

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.3e-36  Score=248.63  Aligned_cols=158  Identities=30%  Similarity=0.446  Sum_probs=130.8

Q ss_pred             eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh----hhhccCcEEEEccCCCCccc-cHH
Q psy10472         14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG----TWLRGNVIGLINQEPVLFAT-SVR   88 (181)
Q Consensus        14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~r~~~i~~v~q~~~l~~~-tv~   88 (181)
                      ++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...+.    ...++ .++|+||++.+|+. |++
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~-~i~~v~q~~~l~~~~tv~   93 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR-RIGYVFQEARLFPHLSVR   93 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhC-CeEEEecCCccCCCCcHH
Confidence            9999999999999999999999999999999999999999999998854321    12333 49999999999975 999


Q ss_pred             HHhhcCCCCCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472         89 ENIRYGDSSVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAA  135 (181)
Q Consensus        89 enl~~~~~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~  135 (181)
                      ||+.++.....    .+++.++++.+++..                             ++.|+|+++||+.+++.+++.
T Consensus        94 enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~  173 (354)
T TIGR02142        94 GNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPY  173 (354)
T ss_pred             HHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence            99998632211    223566666665543                             355779999999999999999


Q ss_pred             HHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        136 LESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       136 l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      |+++. + ++|+|+||||++++.. ||++++|++|++++.
T Consensus       174 L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~  213 (354)
T TIGR02142       174 LERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAA  213 (354)
T ss_pred             HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEE
Confidence            98864 3 8999999999999865 999999999999873

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-36  Score=239.12  Aligned_cols=163  Identities=29%  Similarity=0.426  Sum_probs=132.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++...  +...+++ .++|++|++.
T Consensus        17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~-~i~~~~q~~~   95 (251)
T PRK14251         17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRK-EVGMVFQQPT   95 (251)
T ss_pred             eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhc-cEEEEecCCc
Confidence            569999999999999999999999999999999999997     4799999999987532  2223344 4999999999


Q ss_pred             CccccHHHHhhcCCC---CCC----HHHHHHHHHHhccc----c-----------------------------ccccCCC
Q psy10472         82 LFATSVRENIRYGDS---SVS----DEQIEEAAKLANAH----G-----------------------------FISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~---~~~----~~~~~~~~~~~~~~----~-----------------------------~~~~~P~  121 (181)
                      +|+.|++||+.++..   ...    .+.+.++++.+++.    .                             ++.|+|+
T Consensus        96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~  175 (251)
T PRK14251         96 PFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT  175 (251)
T ss_pred             cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence            888899999986521   111    12344555555541    1                             3557799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++||+.+++.+.+.++++.++.|+|++||+++.+.. ||++++|++|++++.
T Consensus       176 ~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~  227 (251)
T PRK14251        176 SALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA  227 (251)
T ss_pred             ccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEe
Confidence            999999999999999987667999999999999865 999999999999873

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=3.4e-36  Score=259.34  Aligned_cols=164  Identities=25%  Similarity=0.380  Sum_probs=135.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++...+....+++.++|+||++.+++. |+
T Consensus        17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   96 (501)
T PRK10762         17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTI   96 (501)
T ss_pred             eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcH
Confidence            46999999999999999999999999999999999999999999999999986544333333459999999988875 99


Q ss_pred             HHHhhcCCCC------CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472         88 RENIRYGDSS------VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES  128 (181)
Q Consensus        88 ~enl~~~~~~------~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~  128 (181)
                      +||+.++...      ..    .+++.++++.+++..                             ++.|+||++||+.+
T Consensus        97 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~  176 (501)
T PRK10762         97 AENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTE  176 (501)
T ss_pred             HHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHH
Confidence            9999875321      11    123456666665543                             35577999999999


Q ss_pred             HHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        129 EKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       129 ~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++.+.++++++. +|.|||+||||++.+.. ||++++|++|+++..
T Consensus       177 ~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~  222 (501)
T PRK10762        177 TESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE  222 (501)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence            999999998864 48999999999999865 999999999999863

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-36  Score=237.78  Aligned_cols=163  Identities=30%  Similarity=0.468  Sum_probs=131.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~   81 (181)
                      +++++|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++...  +...+++ .++|+||++.
T Consensus        16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~   94 (250)
T PRK14240         16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRK-RVGMVFQQPN   94 (250)
T ss_pred             ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhc-cEEEEecCCc
Confidence            4699999999999999999999999999999999999763     699999999988642  2233444 4999999998


Q ss_pred             CccccHHHHhhcCCC--C-CC----HHHHHHHHHHhccc---------------------------------cccccCCC
Q psy10472         82 LFATSVRENIRYGDS--S-VS----DEQIEEAAKLANAH---------------------------------GFISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~---------------------------------~~~~~~P~  121 (181)
                      +|+.|+.+|+.++..  . ..    .+.+.++++.+++.                                 -++.|+|+
T Consensus        95 ~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~  174 (250)
T PRK14240         95 PFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPT  174 (250)
T ss_pred             cCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            888899999987521  1 11    22334444444321                                 13557799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++||+.++..+.++++++.++.|||++||+++.+.. ||++++|++|++++.
T Consensus       175 ~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~  226 (250)
T PRK14240        175 SALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEF  226 (250)
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe
Confidence            999999999999999887668999999999998865 999999999999873

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-36  Score=248.31  Aligned_cols=164  Identities=24%  Similarity=0.334  Sum_probs=133.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC----CCcceEEECCEECCCCChhhh---ccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD----VSSGNITISGVDLKHLDGTWL---RGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~----p~~G~i~i~g~~i~~~~~~~~---r~~~i~~v~q~~~   81 (181)
                      ..+|++|||+|++||+++|+|+||||||||+++|+|+++    |++|+|.|+|+++..++...+   +++.|+||||++.
T Consensus        20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~   99 (330)
T PRK15093         20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ   99 (330)
T ss_pred             EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence            469999999999999999999999999999999999986    589999999999877665432   3345999999986


Q ss_pred             --Cccc-cHHHHhhcCC-----CC----C---CHHHHHHHHHHhcccc--------------------------------
Q psy10472         82 --LFAT-SVRENIRYGD-----SS----V---SDEQIEEAAKLANAHG--------------------------------  114 (181)
Q Consensus        82 --l~~~-tv~enl~~~~-----~~----~---~~~~~~~~~~~~~~~~--------------------------------  114 (181)
                        +++. ||.+|+.+..     ..    .   ..+++.++++.+++..                                
T Consensus       100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l  179 (330)
T PRK15093        100 SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRL  179 (330)
T ss_pred             hhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCE
Confidence              4454 8999886421     00    0   1234566777776642                                


Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        115 FISEFPSGALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       115 ~~~~~P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++.|+||++||+.++..++++|+++.  .|.|+|+||||++.+.. ||+|++|++|++++.
T Consensus       180 lilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~  240 (330)
T PRK15093        180 LIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET  240 (330)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            35577999999999999999999864  38999999999999965 999999999999984

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=1.8e-36  Score=252.30  Aligned_cols=171  Identities=26%  Similarity=0.382  Sum_probs=142.5

Q ss_pred             CccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472          4 NLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF   83 (181)
Q Consensus         4 ~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~   83 (181)
                      +.++...++++|||+|++||+.||+|+||||||||+++|.|+++|++|+|+++|+.+.-.++.+..+..||+|+|++.|+
T Consensus        12 K~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv   91 (501)
T COG3845          12 KRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLV   91 (501)
T ss_pred             EEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccc
Confidence            34455668999999999999999999999999999999999999999999999999887777766666799999999999


Q ss_pred             cc-cHHHHhhcCCCC-----CC----HHHHHHHHHHhcc-----------------------------ccccccCCCCCC
Q psy10472         84 AT-SVRENIRYGDSS-----VS----DEQIEEAAKLANA-----------------------------HGFISEFPSGAL  124 (181)
Q Consensus        84 ~~-tv~enl~~~~~~-----~~----~~~~~~~~~~~~~-----------------------------~~~~~~~P~~~L  124 (181)
                      +. ||.|||.++...     .+    .+++.++.+..++                             .-++.|+||+-|
T Consensus        92 ~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVL  171 (501)
T COG3845          92 PTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVL  171 (501)
T ss_pred             cccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccC
Confidence            86 999999988532     11    2233333333322                             225778899999


Q ss_pred             CHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecC
Q psy10472        125 DNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLG  174 (181)
Q Consensus       125 D~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~  174 (181)
                      -|...+++++.++.++ +|+|||+|||.+.++.. |||+-+|+.|+++....
T Consensus       172 TP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         172 TPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence            9999999999999875 69999999999999976 99999999999876433

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=3.9e-36  Score=234.16  Aligned_cols=159  Identities=25%  Similarity=0.414  Sum_probs=132.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...   . + +.++|+||++.+++ .|+
T Consensus        13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~-~-~~~~~~~q~~~~~~~~t~   87 (223)
T TIGR03740        13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---D-L-HKIGSLIESPPLYENLTA   87 (223)
T ss_pred             EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---c-c-ccEEEEcCCCCccccCCH
Confidence            5699999999999999999999999999999999999999999999999876432   1 2 24999999998887 499


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472         88 RENIRYGD--SSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAAL  136 (181)
Q Consensus        88 ~enl~~~~--~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l  136 (181)
                      +||+.++.  ......++.++++.+++..                             ++.|+|+++||+.+++.+++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L  167 (223)
T TIGR03740        88 RENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELI  167 (223)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHH
Confidence            99997642  1123445566666655432                             3567799999999999999999


Q ss_pred             HHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        137 ESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       137 ~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +++. ++.|+|++|||++++.. ||++++|++|++++.
T Consensus       168 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~  205 (223)
T TIGR03740       168 RSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQ  205 (223)
T ss_pred             HHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEe
Confidence            8875 48999999999999865 999999999999873

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-36  Score=239.76  Aligned_cols=163  Identities=29%  Similarity=0.517  Sum_probs=132.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCCCh--hhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHLDG--TWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~~~--~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+.+     |++|+|.++|+++...+.  ..+++ .++|+||++.
T Consensus        18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~   96 (251)
T PRK14244         18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRA-KVGMVFQKPN   96 (251)
T ss_pred             eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhh-hEEEEecCcc
Confidence            469999999999999999999999999999999999986     479999999998754321  22343 4999999999


Q ss_pred             CccccHHHHhhcCC--CC--CC----HHHHHHHHHHhcccc---------------------------------ccccCC
Q psy10472         82 LFATSVRENIRYGD--SS--VS----DEQIEEAAKLANAHG---------------------------------FISEFP  120 (181)
Q Consensus        82 l~~~tv~enl~~~~--~~--~~----~~~~~~~~~~~~~~~---------------------------------~~~~~P  120 (181)
                      +|+.|+.+|+.++.  ..  ..    .+.+.++++.+++..                                 ++.|+|
T Consensus        97 ~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP  176 (251)
T PRK14244         97 PFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEP  176 (251)
T ss_pred             cccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            88889999998641  11  11    223445566655421                                 245679


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        121 SGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       121 ~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +++||+.+++.+.+.|+++.+++|||++||+++.+.. ||++++|++|++++.
T Consensus       177 t~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~  229 (251)
T PRK14244        177 CSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEY  229 (251)
T ss_pred             CccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence            9999999999999999887668999999999999865 999999999999873

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.3e-36  Score=246.78  Aligned_cols=164  Identities=24%  Similarity=0.343  Sum_probs=132.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC----CCcceEEECCEECCCCChhhh---ccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD----VSSGNITISGVDLKHLDGTWL---RGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~----p~~G~i~i~g~~i~~~~~~~~---r~~~i~~v~q~~~   81 (181)
                      ..+|+||||+|++||+++|+|+||||||||+++|+|+++    |++|+|.++|+++..++...+   |++.|+||||++.
T Consensus        20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~   99 (326)
T PRK11022         20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM   99 (326)
T ss_pred             EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence            359999999999999999999999999999999999997    489999999999987765432   3345999999984


Q ss_pred             --Cccc-cHHHHhhcC----CCCC---CHHHHHHHHHHhcccc--------------------------------ccccC
Q psy10472         82 --LFAT-SVRENIRYG----DSSV---SDEQIEEAAKLANAHG--------------------------------FISEF  119 (181)
Q Consensus        82 --l~~~-tv~enl~~~----~~~~---~~~~~~~~~~~~~~~~--------------------------------~~~~~  119 (181)
                        +++. |+.+++...    ....   ..+++.++++.+++..                                ++.|+
T Consensus       100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE  179 (326)
T PRK11022        100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE  179 (326)
T ss_pred             hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence              5554 777665432    1111   1234566677766632                                35677


Q ss_pred             CCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        120 PSGALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       120 P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ||++||+.++..++++|+++.  .|.|+|+||||++.+.. ||+|++|.+|++++.
T Consensus       180 Pts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~  235 (326)
T PRK11022        180 PTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET  235 (326)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            999999999999999998864  38999999999999865 999999999999984

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-36  Score=239.22  Aligned_cols=163  Identities=28%  Similarity=0.420  Sum_probs=131.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC---CCC--CcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF---YDV--SSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl---~~p--~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+   ++|  ++|+|.++|+++...+  ...+++ .++|+||++.
T Consensus        16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~v~q~~~   94 (250)
T PRK14245         16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRK-NVGMVFQRPN   94 (250)
T ss_pred             EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhh-heEEEecCCc
Confidence            4689999999999999999999999999999999997   455  5899999999886432  223344 4999999998


Q ss_pred             CccccHHHHhhcCCC--C-CC----HHHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472         82 LFATSVRENIRYGDS--S-VS----DEQIEEAAKLANAHG---------------------------------FISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~~---------------------------------~~~~~P~  121 (181)
                      +|+.|+.||+.++..  . ..    .+.++++++.+++..                                 ++.|+||
T Consensus        95 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt  174 (250)
T PRK14245         95 PFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA  174 (250)
T ss_pred             cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            887899999986421  1 11    223455666555421                                 3557799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++||+.+++.+.+.|+++.+++|||++||+++.+.. ||++++|++|++++.
T Consensus       175 ~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~  226 (250)
T PRK14245        175 SALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEY  226 (250)
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEE
Confidence            999999999999999987668999999999999855 999999999999873

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.1e-36  Score=237.06  Aligned_cols=164  Identities=30%  Similarity=0.473  Sum_probs=131.9

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCC-CChhhhccCcEEEEccCCC
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKH-LDGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~-~~~~~~r~~~i~~v~q~~~   81 (181)
                      .+++|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++.. .+...+++ .++|+||++.
T Consensus        15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~-~i~~~~q~~~   93 (249)
T PRK14253         15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRI-KVGMVFQKPN   93 (249)
T ss_pred             CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHh-heeEEecCCC
Confidence            35699999999999999999999999999999999999986     59999999998752 23334444 4999999999


Q ss_pred             CccccHHHHhhcCCC--C-CCH----HHHHHHHHHhccc---------------------------------cccccCCC
Q psy10472         82 LFATSVRENIRYGDS--S-VSD----EQIEEAAKLANAH---------------------------------GFISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~--~-~~~----~~~~~~~~~~~~~---------------------------------~~~~~~P~  121 (181)
                      +|+.|+.||+.++..  . ...    +++.++++.+++.                                 -++.|+|+
T Consensus        94 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~  173 (249)
T PRK14253         94 PFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPT  173 (249)
T ss_pred             cCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            888899999987521  1 111    2233344433321                                 13567799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++||+.++..+.++++++.++.|||++||+++.+.. ||++++|++|++++.
T Consensus       174 ~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~  225 (249)
T PRK14253        174 SALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEH  225 (249)
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999988667999999999999866 999999999999873

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=5e-36  Score=239.61  Aligned_cols=162  Identities=22%  Similarity=0.379  Sum_probs=131.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--Cccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~~-   85 (181)
                      +++|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++...+....+ +.++|+||++.  +++. 
T Consensus        26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~-~~i~~v~q~~~~~~~~~~  104 (267)
T PRK15112         26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRS-QRIRMIFQDPSTSLNPRQ  104 (267)
T ss_pred             cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHh-ccEEEEecCchhhcCcch
Confidence            4699999999999999999999999999999999999999999999999988643333333 35999999985  4454 


Q ss_pred             cHHHHhhcCCC---CCC----HHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCHHH
Q psy10472         86 SVRENIRYGDS---SVS----DEQIEEAAKLANAH-G-----------------------------FISEFPSGALDNES  128 (181)
Q Consensus        86 tv~enl~~~~~---~~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~~~  128 (181)
                      |+.+|+.+...   ...    .+++.++++.+++. .                             ++.|+|+++||+.+
T Consensus       105 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~  184 (267)
T PRK15112        105 RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM  184 (267)
T ss_pred             hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHH
Confidence            89999865311   111    23455667666652 2                             35577999999999


Q ss_pred             HHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        129 EKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       129 ~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      ++.+.+.|.++. + |.|||++||+++.+.. ||++++|++|++++
T Consensus       185 ~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~  230 (267)
T PRK15112        185 RSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE  230 (267)
T ss_pred             HHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence            999999998864 3 8999999999999976 99999999999987

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.3e-36  Score=238.02  Aligned_cols=158  Identities=29%  Similarity=0.459  Sum_probs=130.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...     +. .++|+||++.+++. |+
T Consensus        14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~-~~~~v~q~~~~~~~~tv   87 (255)
T PRK11248         14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GA-ERGVVFQNEGLLPWRNV   87 (255)
T ss_pred             eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CC-cEEEEeCCCccCCCCcH
Confidence            4699999999999999999999999999999999999999999999999987532     12 38999999988874 99


Q ss_pred             HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      .+|+.++..  ...    .+++.++++.+++..                             ++.|+||++||+.+++.+
T Consensus        88 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l  167 (255)
T PRK11248         88 QDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM  167 (255)
T ss_pred             HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence            999987421  111    233455666555432                             356779999999999999


Q ss_pred             HHHHHHh-c-CCcEEEEEecCchhhhc-CCeEEEEe--CCeEEee
Q psy10472        133 QAALESA-C-KGRTVLMIAHRLSTVQN-ADLIVVLQ--AGQIVEM  172 (181)
Q Consensus       133 ~~~l~~~-~-~~~tii~vtHd~~~~~~-~d~v~~l~--~G~i~~~  172 (181)
                      .++|+++ + +|+|+|++|||++.+.. ||++++|+  +|++++.
T Consensus       168 ~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~  212 (255)
T PRK11248        168 QTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVER  212 (255)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEE
Confidence            9999886 3 48999999999999865 99999998  5999873

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.5e-36  Score=236.79  Aligned_cols=163  Identities=26%  Similarity=0.456  Sum_probs=132.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-----cceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDLKHLD--GTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-----~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++|++++|+||||||||||+++|+|+++|+     +|+|.++|+++...+  ...+++ .++|+||++.
T Consensus        17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~-~i~~v~q~~~   95 (251)
T PRK14249         17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRK-RVGMVFQQPN   95 (251)
T ss_pred             eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhc-eEEEEecCCc
Confidence            46999999999999999999999999999999999999997     699999999875422  223444 4999999999


Q ss_pred             CccccHHHHhhcCCC--C-CC----HHHHHHHHHHhccc---------------------------------cccccCCC
Q psy10472         82 LFATSVRENIRYGDS--S-VS----DEQIEEAAKLANAH---------------------------------GFISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~---------------------------------~~~~~~P~  121 (181)
                      +|+.|+.||+.++..  . ..    .+.+.++++.+++.                                 -++.|+|+
T Consensus        96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt  175 (251)
T PRK14249         96 PFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC  175 (251)
T ss_pred             cCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            888899999987531  1 11    12233344444321                                 13557799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++||+.++..+.++|+++.+++|||++||+++.+.. ||++++|++|++++.
T Consensus       176 ~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~  227 (251)
T PRK14249        176 SALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY  227 (251)
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEe
Confidence            999999999999999887668999999999999876 999999999999873

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.8e-36  Score=234.53  Aligned_cols=160  Identities=29%  Similarity=0.473  Sum_probs=131.2

Q ss_pred             ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHh
Q psy10472         13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENI   91 (181)
Q Consensus        13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl   91 (181)
                      .++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..  + +.++|+||++.+|+. |+.||+
T Consensus        16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~-~~i~~~~q~~~~~~~~tv~e~l   92 (232)
T PRK10771         16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--R-RPVSMLFQENNLFSHLTVAQNI   92 (232)
T ss_pred             ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--h-ccEEEEecccccccCCcHHHHH
Confidence            489999999999999999999999999999999999999999999987654322  2 349999999998875 999999


Q ss_pred             hcCCCC---CC---HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472         92 RYGDSS---VS---DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAAL  136 (181)
Q Consensus        92 ~~~~~~---~~---~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l  136 (181)
                      .++...   ..   .+++.++++.+++..                             ++.|+|+++||+.+++.+.+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l  172 (232)
T PRK10771         93 GLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLV  172 (232)
T ss_pred             hcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            875211   11   234556666665432                             3557799999999999999999


Q ss_pred             HHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        137 ESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       137 ~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      +++. + |+|+|++||+++++.. ||++++|++|++++ .++.
T Consensus       173 ~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~-~g~~  214 (232)
T PRK10771        173 SQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAW-DGPT  214 (232)
T ss_pred             HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCH
Confidence            8863 3 8999999999999865 99999999999987 3443

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=3.6e-36  Score=246.84  Aligned_cols=167  Identities=28%  Similarity=0.392  Sum_probs=134.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCEECCCCChhhh---ccCcEEEEccCC--
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVDLKHLDGTWL---RGNVIGLINQEP--   80 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g~~i~~~~~~~~---r~~~i~~v~q~~--   80 (181)
                      ..+++||||+|++||+++|+|+||||||||+++|+|+++|+   +|+|.++|+++..++...+   |++.|+||||++  
T Consensus        29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~  108 (330)
T PRK09473         29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT  108 (330)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence            45899999999999999999999999999999999999996   9999999999987765443   334599999998  


Q ss_pred             CCccc-cHHHHhhcCC---CCCC----HHHHHHHHHHhcccc--------------------------------ccccCC
Q psy10472         81 VLFAT-SVRENIRYGD---SSVS----DEQIEEAAKLANAHG--------------------------------FISEFP  120 (181)
Q Consensus        81 ~l~~~-tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~--------------------------------~~~~~P  120 (181)
                      .+++. |+.+|+.+..   ....    .+++.++++.+++..                                ++.|+|
T Consensus       109 ~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEP  188 (330)
T PRK09473        109 SLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEP  188 (330)
T ss_pred             hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            45564 8888775421   1112    123455566555431                                355779


Q ss_pred             CCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        121 SGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       121 ~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      |++||+.++..++++|+++. + |.|+|+||||++.+.. ||++++|++|++++. ++.
T Consensus       189 ts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~-g~~  246 (330)
T PRK09473        189 TTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY-GNA  246 (330)
T ss_pred             CccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE-CCH
Confidence            99999999999999998864 3 8999999999999865 999999999999984 443

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.8e-36  Score=258.68  Aligned_cols=164  Identities=24%  Similarity=0.372  Sum_probs=136.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC--CcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV--SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p--~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +++|+++||+|++||+++|+||||||||||+|+|+|+++|  ++|+|.++|+++...+....+++.++|+||++.+++. 
T Consensus        18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   97 (506)
T PRK13549         18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKEL   97 (506)
T ss_pred             eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCC
Confidence            4699999999999999999999999999999999999996  8999999999987655443333459999999988875 


Q ss_pred             cHHHHhhcCCCC-----CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHH
Q psy10472         86 SVRENIRYGDSS-----VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNE  127 (181)
Q Consensus        86 tv~enl~~~~~~-----~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~  127 (181)
                      |++||+.++...     ..    .+++.++++.+++..                             ++.|+||++||+.
T Consensus        98 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~  177 (506)
T PRK13549         98 SVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTES  177 (506)
T ss_pred             cHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence            999999876321     11    134556666666533                             3567799999999


Q ss_pred             HHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        128 SEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       128 ~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++..+.++|.++. +|.|||++|||++.+.. ||++++|++|+++..
T Consensus       178 ~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~  224 (506)
T PRK13549        178 ETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGT  224 (506)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeee
Confidence            9999999998864 58999999999999865 999999999999873

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-36  Score=237.73  Aligned_cols=163  Identities=28%  Similarity=0.460  Sum_probs=131.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...+  ...+++ .++|+||++.
T Consensus        16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~-~i~~~~q~~~   94 (250)
T PRK14262         16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRK-KVGMVFQKPT   94 (250)
T ss_pred             ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhh-hEEEEecCCc
Confidence            5689999999999999999999999999999999999884     8999999999875422  123344 4999999999


Q ss_pred             CccccHHHHhhcCCC---CCC----HHHHHHHHHHhccc---------------------------------cccccCCC
Q psy10472         82 LFATSVRENIRYGDS---SVS----DEQIEEAAKLANAH---------------------------------GFISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~---~~~----~~~~~~~~~~~~~~---------------------------------~~~~~~P~  121 (181)
                      +|+.|++||+.++..   ...    .+.+.++++.+++.                                 -++.|+|+
T Consensus        95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~  174 (250)
T PRK14262         95 PFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT  174 (250)
T ss_pred             cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence            888899999986421   111    12234444444331                                 13557799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|+++..
T Consensus       175 ~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~  226 (250)
T PRK14262        175 SALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEY  226 (250)
T ss_pred             cccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999987667899999999998755 999999999999873

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6e-36  Score=237.26  Aligned_cols=163  Identities=29%  Similarity=0.451  Sum_probs=131.2

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCC--ChhhhccCcEEEEccCC
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHL--DGTWLRGNVIGLINQEP   80 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~   80 (181)
                      .+.+|+|+||+|++||+++|+||||||||||+++|+|+.+|     ++|+|.++|+++...  +....++ .++|+||++
T Consensus        18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~   96 (253)
T PRK14261         18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRR-KIGMVFQRP   96 (253)
T ss_pred             CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhc-eEEEEecCC
Confidence            35699999999999999999999999999999999999763     489999999998654  2233344 499999999


Q ss_pred             CCccccHHHHhhcCCCC---CC----HHHHHHHHHHhccc---------------------------------cccccCC
Q psy10472         81 VLFATSVRENIRYGDSS---VS----DEQIEEAAKLANAH---------------------------------GFISEFP  120 (181)
Q Consensus        81 ~l~~~tv~enl~~~~~~---~~----~~~~~~~~~~~~~~---------------------------------~~~~~~P  120 (181)
                      .+|+.|++||+.++...   ..    .+.+.++++.+++.                                 -++.|+|
T Consensus        97 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP  176 (253)
T PRK14261         97 NPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEP  176 (253)
T ss_pred             ccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            98888999999875321   11    12234444444321                                 1356779


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        121 SGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       121 ~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      +++||+.+++.+.++++.+.+++|+|++||+++.+.. ||++++|++|++++
T Consensus       177 ~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~  228 (253)
T PRK14261        177 CSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE  228 (253)
T ss_pred             cccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence            9999999999999999887667899999999999865 99999999999987

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.9e-36  Score=237.49  Aligned_cols=163  Identities=26%  Similarity=0.389  Sum_probs=129.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC--CC---CcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY--DV---SSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~--~p---~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+.  +|   ++|+|.++|+++....  ...+++ .++|+||++.
T Consensus        18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~v~q~~~   96 (252)
T PRK14239         18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRK-EIGMVFQQPN   96 (252)
T ss_pred             eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhh-cEEEEecCCc
Confidence            46999999999999999999999999999999999985  46   5999999999885422  223444 4999999999


Q ss_pred             CccccHHHHhhcCC---CCCC----HHHHHHHHHHhccc---------------------------------cccccCCC
Q psy10472         82 LFATSVRENIRYGD---SSVS----DEQIEEAAKLANAH---------------------------------GFISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~---~~~~----~~~~~~~~~~~~~~---------------------------------~~~~~~P~  121 (181)
                      +|+.|++||+.++.   ....    .+++.++++.+++.                                 -++.|+|+
T Consensus        97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  176 (252)
T PRK14239         97 PFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT  176 (252)
T ss_pred             cCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            88889999998642   1111    12233444444321                                 13567799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++||+.++..+.++|+++.+++|||++||+++.+.. ||++++|++|++++.
T Consensus       177 ~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  228 (252)
T PRK14239        177 SALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEY  228 (252)
T ss_pred             cccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999887667899999999998865 999999999999873

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.8e-36  Score=239.32  Aligned_cols=163  Identities=26%  Similarity=0.411  Sum_probs=130.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+|+||||||||+++|+|+++     |++|+|.++|+++...  +...+++ .++|+||++.
T Consensus        37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~v~q~~~  115 (271)
T PRK14238         37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRT-NVGMVFQKPN  115 (271)
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhh-hEEEEecCCc
Confidence            469999999999999999999999999999999999987     6999999999987532  2233444 4999999999


Q ss_pred             CccccHHHHhhcCCC--CC-CH----HHHHHHHHHhcc---------------------------------ccccccCCC
Q psy10472         82 LFATSVRENIRYGDS--SV-SD----EQIEEAAKLANA---------------------------------HGFISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~--~~-~~----~~~~~~~~~~~~---------------------------------~~~~~~~P~  121 (181)
                      +|+.|+.||+.++..  .. ..    +.+.++++.+++                                 .-++.|+|+
T Consensus       116 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt  195 (271)
T PRK14238        116 PFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPT  195 (271)
T ss_pred             cccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            888899999986421  11 11    112333332211                                 113567899


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++||+.++..+.++|+++.++.|+|++|||++.+.. ||++++|++|++++.
T Consensus       196 ~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~  247 (271)
T PRK14238        196 SALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEY  247 (271)
T ss_pred             CcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999887667999999999999865 999999999999873

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=4.2e-36  Score=239.32  Aligned_cols=164  Identities=26%  Similarity=0.331  Sum_probs=132.7

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCEECCCCC-----hhhhccCcEEEEccC
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVDLKHLD-----GTWLRGNVIGLINQE   79 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g~~i~~~~-----~~~~r~~~i~~v~q~   79 (181)
                      .+++|+++||+|.+||+++|+||||||||||+++|+|+++|+   +|+|.++|+++....     ...+++ .++|+||+
T Consensus        16 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~-~i~~~~q~   94 (262)
T PRK09984         16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRA-NTGYIFQQ   94 (262)
T ss_pred             CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHh-heEEEccc
Confidence            356999999999999999999999999999999999999986   499999999875432     123333 49999999


Q ss_pred             CCCccc-cHHHHhhcCCCC--------------CCHHHHHHHHHHhcccc-----------------------------c
Q psy10472         80 PVLFAT-SVRENIRYGDSS--------------VSDEQIEEAAKLANAHG-----------------------------F  115 (181)
Q Consensus        80 ~~l~~~-tv~enl~~~~~~--------------~~~~~~~~~~~~~~~~~-----------------------------~  115 (181)
                      +.+|+. |+.+|+.++...              ...+++.++++.+++..                             +
T Consensus        95 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  174 (262)
T PRK09984         95 FNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVI  174 (262)
T ss_pred             cccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEE
Confidence            988875 999999865210              01234455666655432                             3


Q ss_pred             cccCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        116 ISEFPSGALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       116 ~~~~P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +.|+|+++||+.+++.+.+.|+++.  +|+|+|++|||++.+.. ||++++|++|++++.
T Consensus       175 llDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~  234 (262)
T PRK09984        175 LADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD  234 (262)
T ss_pred             EecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            5677999999999999999998874  38999999999998755 999999999999873

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=5.8e-37  Score=236.12  Aligned_cols=164  Identities=22%  Similarity=0.419  Sum_probs=136.6

Q ss_pred             CCccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC
Q psy10472          3 GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL   82 (181)
Q Consensus         3 ~~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l   82 (181)
                      .+..+.+.+++|+||++++|++.+++|||||||||.+|+|+|+++|++|+|.|+|.+++..    .+. +|||+|.+-.|
T Consensus         9 tK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~----~~~-rIGyLPEERGL   83 (300)
T COG4152           9 TKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKN-RIGYLPEERGL   83 (300)
T ss_pred             hhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh----hhh-hcccChhhhcc
Confidence            3445667899999999999999999999999999999999999999999999999987542    233 49999999999


Q ss_pred             ccc-cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCH
Q psy10472         83 FAT-SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDN  126 (181)
Q Consensus        83 ~~~-tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~  126 (181)
                      ++. ||.|.+.|...  ...    ..++..+++.+++.+                             ++.|+||++|||
T Consensus        84 y~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDP  163 (300)
T COG4152          84 YPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP  163 (300)
T ss_pred             CccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCCh
Confidence            985 99999988532  122    223445555544322                             466889999999


Q ss_pred             HHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        127 ESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       127 ~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      .+.+.+.+.+.+++ +|.|||++||.++.++. ||++++|++|+.+-
T Consensus       164 VN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~  210 (300)
T COG4152         164 VNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVL  210 (300)
T ss_pred             hhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEE
Confidence            99999999998875 59999999999999977 99999999999876

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.6e-36  Score=236.51  Aligned_cols=163  Identities=26%  Similarity=0.432  Sum_probs=131.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC--C---CcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD--V---SSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~--p---~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|+++...+  ...+++ .++|+||++.
T Consensus        17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~-~i~~~~q~~~   95 (252)
T PRK14256         17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRR-RVGMVFQKPN   95 (252)
T ss_pred             eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhc-cEEEEecCCC
Confidence            469999999999999999999999999999999999986  4   6899999999886432  223444 4999999999


Q ss_pred             Cccc-cHHHHhhcCCC--C-CC----HHHHHHHHHHhcccc---------------------------------ccccCC
Q psy10472         82 LFAT-SVRENIRYGDS--S-VS----DEQIEEAAKLANAHG---------------------------------FISEFP  120 (181)
Q Consensus        82 l~~~-tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~~---------------------------------~~~~~P  120 (181)
                      +|+. |+.||+.++..  . ..    .+++.++++.+++..                                 ++.|+|
T Consensus        96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP  175 (252)
T PRK14256         96 PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEP  175 (252)
T ss_pred             CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            8874 99999986421  1 11    123455555555321                                 355779


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        121 SGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       121 ~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +++||+.+++.+.+.|+++.++.|||++||+++.+.. ||++++|++|++++.
T Consensus       176 ~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  228 (252)
T PRK14256        176 ASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC  228 (252)
T ss_pred             cccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence            9999999999999999988667899999999999855 999999999999873

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=4.5e-36  Score=233.46  Aligned_cols=160  Identities=28%  Similarity=0.455  Sum_probs=131.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCCCcc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPVLFA-   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~l~~-   84 (181)
                      +.+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+..   ..+ +.++|+||++.+|+ 
T Consensus        18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~i~~~~q~~~~~~~   96 (220)
T TIGR02982        18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR-RNIGYIFQAHNLLGF   96 (220)
T ss_pred             eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH-hheEEEcCChhhcCC
Confidence            5699999999999999999999999999999999999999999999999988655432   233 35999999999887 


Q ss_pred             ccHHHHhhcCCC---CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472         85 TSVRENIRYGDS---SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES  128 (181)
Q Consensus        85 ~tv~enl~~~~~---~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~  128 (181)
                      .|+.||+.++..   ...    .+.+.++++.+++..                             ++.|+|+++||+.+
T Consensus        97 ~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~  176 (220)
T TIGR02982        97 LTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS  176 (220)
T ss_pred             CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence            599999986521   111    123455666655433                             35677999999999


Q ss_pred             HHHHHHHHHHhc--CCcEEEEEecCchhhhcCCeEEEEeCCeE
Q psy10472        129 EKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQI  169 (181)
Q Consensus       129 ~~~i~~~l~~~~--~~~tii~vtHd~~~~~~~d~v~~l~~G~i  169 (181)
                      ++.+.+.|+++.  .++|+|++||+++....||++++|++|++
T Consensus       177 ~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       177 GRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL  219 (220)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence            999999998764  38999999999987666999999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3e-36  Score=227.95  Aligned_cols=169  Identities=25%  Similarity=0.410  Sum_probs=141.2

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC-cccc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL-FATS   86 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l-~~~t   86 (181)
                      .+.+|+++||++++||+.+|+||||||||||||.|+|.+.|++|++.++|.++..+++.++.++ -++++|+..+ |+.|
T Consensus        13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~-raVlpQ~s~laFpFt   91 (259)
T COG4559          13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH-RAVLPQNSSLAFPFT   91 (259)
T ss_pred             cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHH-hhhcccCcccccceE
Confidence            3679999999999999999999999999999999999999999999999999999988876655 5899999876 7889


Q ss_pred             HHHHhhcCCCCC----C--HH--HHHHHHHHhcccc-----------------------------------ccccCCCCC
Q psy10472         87 VRENIRYGDSSV----S--DE--QIEEAAKLANAHG-----------------------------------FISEFPSGA  123 (181)
Q Consensus        87 v~enl~~~~~~~----~--~~--~~~~~~~~~~~~~-----------------------------------~~~~~P~~~  123 (181)
                      |+|-+.+|....    .  ++  ..++++...++..                                   ++.|+||++
T Consensus        92 v~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsa  171 (259)
T COG4559          92 VQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA  171 (259)
T ss_pred             HHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccc
Confidence            999999984211    1  11  2345554433222                                   356789999


Q ss_pred             CCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-cCCeEEEEeCCeEEeecCCchh
Q psy10472        124 LDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQ-NADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~-~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      ||...+...+.+.+++. +|..|+.|-||++.+. +||||++|.+|+++. .+++++
T Consensus       172 LDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a-~g~p~~  227 (259)
T COG4559         172 LDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIA-SGSPQD  227 (259)
T ss_pred             cchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEee-cCCHHH
Confidence            99999999999999975 5899999999999985 599999999999998 455543

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=5.1e-36  Score=234.91  Aligned_cols=161  Identities=29%  Similarity=0.468  Sum_probs=133.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+..  + +.++|++|++.+|+. |+
T Consensus        13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~-~~i~~~~q~~~~~~~~t~   89 (232)
T cd03300          13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--K-RPVNTVFQNYALFPHLTV   89 (232)
T ss_pred             eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--h-cceEEEecccccCCCCcH
Confidence            4699999999999999999999999999999999999999999999999988755432  3 349999999998865 99


Q ss_pred             HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      .+|+.++..  ...    .+++..+++.+++..                             ++.|+|+++||+.+++.+
T Consensus        90 ~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l  169 (232)
T cd03300          90 FENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM  169 (232)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence            999986421  111    234455666555543                             355779999999999999


Q ss_pred             HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      .++++++. + |.|||++||+++++.. ||++++|++|++.+.
T Consensus       170 ~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~  212 (232)
T cd03300         170 QLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQI  212 (232)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence            99998864 3 8999999999999865 999999999999873

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.7e-36  Score=237.65  Aligned_cols=166  Identities=28%  Similarity=0.458  Sum_probs=132.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCC--CChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKH--LDGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~--~~~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++..  .....+++ .++|+||++.
T Consensus        17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~   95 (258)
T PRK14241         17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRR-TIGMVFQRPN   95 (258)
T ss_pred             EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhc-ceEEEccccc
Confidence            4699999999999999999999999999999999999974     79999999998753  22333444 4999999998


Q ss_pred             Cccc-cHHHHhhcCCC---CCC----HHHHHHHHHHhccc----c-----------------------------ccccCC
Q psy10472         82 LFAT-SVRENIRYGDS---SVS----DEQIEEAAKLANAH----G-----------------------------FISEFP  120 (181)
Q Consensus        82 l~~~-tv~enl~~~~~---~~~----~~~~~~~~~~~~~~----~-----------------------------~~~~~P  120 (181)
                      +|+. |++||+.++..   ...    .+.+.++++.+++.    .                             ++.|+|
T Consensus        96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  175 (258)
T PRK14241         96 PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEP  175 (258)
T ss_pred             cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            8875 99999986421   111    12344555555431    1                             355779


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEe------CCeEEeecCCc
Q psy10472        121 SGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ------AGQIVEMLGQH  176 (181)
Q Consensus       121 ~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~------~G~i~~~~~~~  176 (181)
                      +++||+.++..+.++|+++++++|+|++||+++.+.. ||++++|+      +|++++ .++.
T Consensus       176 t~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~-~~~~  237 (258)
T PRK14241        176 CSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE-IDDT  237 (258)
T ss_pred             CccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe-cCCH
Confidence            9999999999999999887667899999999999865 99999997      799987 4443

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.2e-35  Score=233.60  Aligned_cols=161  Identities=31%  Similarity=0.510  Sum_probs=133.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.  .+ +.++|+||++.+|+. |+
T Consensus        13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~-~~i~~~~q~~~~~~~~t~   89 (237)
T TIGR00968        13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RD-RKIGFVFQHYALFKHLTV   89 (237)
T ss_pred             eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hh-cCEEEEecChhhccCCcH
Confidence            469999999999999999999999999999999999999999999999998865432  23 359999999999875 99


Q ss_pred             HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      .||+.+...  ...    .+.+.++++.+++..                             ++.|+|+++||+.+++.+
T Consensus        90 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~  169 (237)
T TIGR00968        90 RDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL  169 (237)
T ss_pred             HHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence            999987532  111    223455555554432                             355779999999999999


Q ss_pred             HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      .+++.+.. + ++|+|++||+++.+.. ||++++|++|++++.
T Consensus       170 ~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~  212 (237)
T TIGR00968       170 RSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQI  212 (237)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence            99998864 3 7999999999999865 999999999999873

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=6.8e-36  Score=282.46  Aligned_cols=167  Identities=24%  Similarity=0.450  Sum_probs=148.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++||.++|+|+||||||||+++|+|+++ .+|+|.|||.++.+++...+|++ ++||||+|.+|++|++
T Consensus      1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~-is~IpQdp~LF~GTIR 1309 (1490)
T TIGR01271      1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKA-FGVIPQKVFIFSGTFR 1309 (1490)
T ss_pred             cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhc-eEEEeCCCccCccCHH
Confidence            569999999999999999999999999999999999997 79999999999999998888876 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      +||.... ..++++++++++.+++.+                                        ++.|+||++||+++
T Consensus      1310 ~NLdp~~-~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~T 1388 (1490)
T TIGR01271      1310 KNLDPYE-QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT 1388 (1490)
T ss_pred             HHhCccc-CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHH
Confidence            9997653 456788888888766543                                        24566999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      ...+.+.|+...+++|||+|||+++.+..||+|++|++|++++ .+.++++
T Consensus      1389 e~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE-~g~p~~L 1438 (1490)
T TIGR01271      1389 LQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQ-YDSIQKL 1438 (1490)
T ss_pred             HHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence            9999999998878899999999999999999999999999998 4655443

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=236.64  Aligned_cols=166  Identities=25%  Similarity=0.396  Sum_probs=134.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++...  ....+++ .++|+||++.
T Consensus        21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~   99 (261)
T PRK14263         21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRR-YIGMVFQQPN   99 (261)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhh-ceEEEecCCc
Confidence            4699999999999999999999999999999999999986     799999999987542  2223344 4999999999


Q ss_pred             CccccHHHHhhcCCCC--C---CHHHHHHHHHHhcccc---------------------------------ccccCCCCC
Q psy10472         82 LFATSVRENIRYGDSS--V---SDEQIEEAAKLANAHG---------------------------------FISEFPSGA  123 (181)
Q Consensus        82 l~~~tv~enl~~~~~~--~---~~~~~~~~~~~~~~~~---------------------------------~~~~~P~~~  123 (181)
                      +|..|+.||+.++...  .   ..+.+.++++.+++..                                 ++.|+||++
T Consensus       100 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsg  179 (261)
T PRK14263        100 PFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSA  179 (261)
T ss_pred             cccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            8878999999875311  1   1234455555554321                                 345679999


Q ss_pred             CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEe--------CCeEEeecCCc
Q psy10472        124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ--------AGQIVEMLGQH  176 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~--------~G~i~~~~~~~  176 (181)
                      ||+.++..+.+.++++.++.|+|++||+++.+.. ||++++|+        +|++++ .++.
T Consensus       180 LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~-~g~~  240 (261)
T PRK14263        180 LDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE-MGPT  240 (261)
T ss_pred             CCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE-eCCH
Confidence            9999999999999987668999999999998865 99999996        899988 4443

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=255.43  Aligned_cols=164  Identities=23%  Similarity=0.339  Sum_probs=134.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.....++.++|+||++.+++. ||
T Consensus        11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   90 (491)
T PRK10982         11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSV   90 (491)
T ss_pred             EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCH
Confidence            56999999999999999999999999999999999999999999999999986554333223359999999987765 99


Q ss_pred             HHHhhcCCC---C--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         88 RENIRYGDS---S--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        88 ~enl~~~~~---~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                      .||+.++..   .  ..    .+++.++++.+++..                             ++.|+||++||+.++
T Consensus        91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~  170 (491)
T PRK10982         91 MDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEV  170 (491)
T ss_pred             HHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence            999987531   1  11    123455566555432                             356779999999999


Q ss_pred             HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +.+.++++++. +|.|+|++|||++++.. ||++++|++|++++.
T Consensus       171 ~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~  215 (491)
T PRK10982        171 NHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIAT  215 (491)
T ss_pred             HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEee
Confidence            99999998864 58999999999999865 999999999999873

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=1.1e-35  Score=233.75  Aligned_cols=163  Identities=21%  Similarity=0.364  Sum_probs=129.2

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEc-cCCCCcc-
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLIN-QEPVLFA-   84 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~-q~~~l~~-   84 (181)
                      +.+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ...++ .++|++ |++.+++ 
T Consensus        32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~-~~~~~-~i~~~~~~~~~~~~~  109 (236)
T cd03267          32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR-KKFLR-RIGVVFGQKTQLWWD  109 (236)
T ss_pred             CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc-hhhcc-cEEEEcCCccccCCC
Confidence            3457999999999999999999999999999999999999999999999998764322 23343 499998 5566765 


Q ss_pred             ccHHHHhhcCCC--CCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         85 TSVRENIRYGDS--SVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        85 ~tv~enl~~~~~--~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                      .|+.||+.+...  ....    +.+..+++.+++..                             ++.|+|+++||+.++
T Consensus       110 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~  189 (236)
T cd03267         110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQ  189 (236)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence            499999876421  1111    22344555444322                             356789999999999


Q ss_pred             HHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        130 KLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       130 ~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      +.+.++|+++. + +.|||++||+++++.. ||++++|++|++++
T Consensus       190 ~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  234 (236)
T cd03267         190 ENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY  234 (236)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence            99999998864 3 7899999999999865 99999999999876

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=1.2e-35  Score=233.33  Aligned_cols=160  Identities=26%  Similarity=0.470  Sum_probs=132.1

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccHH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSVR   88 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv~   88 (181)
                      ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+..  + +.++|+||++.+|+ .|+.
T Consensus        13 ~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~--~-~~i~~~~q~~~~~~~~t~~   89 (235)
T cd03299          13 FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--K-RDISYVPQNYALFPHMTVY   89 (235)
T ss_pred             ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChh--H-cCEEEEeecCccCCCccHH
Confidence            389999999999999999999999999999999999999999999999988654432  3 35999999998886 5999


Q ss_pred             HHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHH
Q psy10472         89 ENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQ  133 (181)
Q Consensus        89 enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~  133 (181)
                      ||+.++...  ..    .+.+.++++.+++..                             ++.|+|+++||+.+++.+.
T Consensus        90 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~  169 (235)
T cd03299          90 KNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLR  169 (235)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHH
Confidence            999864211  11    223445565555432                             3557799999999999999


Q ss_pred             HHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        134 AALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       134 ~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +.++++. + ++|+|++||+++++.. ||++++|++|++++.
T Consensus       170 ~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~  211 (235)
T cd03299         170 EELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV  211 (235)
T ss_pred             HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            9998864 3 8999999999999865 999999999999873

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.3e-36  Score=239.03  Aligned_cols=167  Identities=28%  Similarity=0.435  Sum_probs=133.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-C----CcceEEECCEECCCCChh---hhccCcEEEEccCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-V----SSGNITISGVDLKHLDGT---WLRGNVIGLINQEP   80 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-p----~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~   80 (181)
                      ..+++||||+|++||+++|+|.|||||||+.+.|+|+++ |    .+|+|.|+|+++..++..   ++|.+.|+||||+|
T Consensus        18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p   97 (316)
T COG0444          18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP   97 (316)
T ss_pred             EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence            469999999999999999999999999999999999998 4    579999999999888865   45667799999998


Q ss_pred             C--Cccc-cHHHHhhcC----CCC-CC---HHHHHHHHHHhcccc--------------------------------ccc
Q psy10472         81 V--LFAT-SVRENIRYG----DSS-VS---DEQIEEAAKLANAHG--------------------------------FIS  117 (181)
Q Consensus        81 ~--l~~~-tv~enl~~~----~~~-~~---~~~~~~~~~~~~~~~--------------------------------~~~  117 (181)
                      .  |-|. ||.+.+.-.    ... ..   .+++.++++.+++..                                ++.
T Consensus        98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIA  177 (316)
T COG0444          98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIA  177 (316)
T ss_pred             hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEe
Confidence            3  3343 776555432    111 11   223445555554432                                467


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        118 EFPSGALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       118 ~~P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      |+||++||...+.+++++|++++  .|.++|+||||+..+.. ||||++|..|+|+|. ++.
T Consensus       178 DEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~-g~~  238 (316)
T COG0444         178 DEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEE-GPV  238 (316)
T ss_pred             CCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEe-CCH
Confidence            88999999999999999999875  39999999999999866 999999999999994 543

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-35  Score=236.84  Aligned_cols=166  Identities=28%  Similarity=0.442  Sum_probs=131.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCC--CChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKH--LDGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~--~~~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  .+...+++ .++|+||++.
T Consensus        23 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~  101 (264)
T PRK14243         23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRR-RIGMVFQKPN  101 (264)
T ss_pred             EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhh-hEEEEccCCc
Confidence            468999999999999999999999999999999999986     489999999998753  22333444 4999999998


Q ss_pred             CccccHHHHhhcCCCC--CC---HHHHHHHHHHhccc---------------------------------cccccCCCCC
Q psy10472         82 LFATSVRENIRYGDSS--VS---DEQIEEAAKLANAH---------------------------------GFISEFPSGA  123 (181)
Q Consensus        82 l~~~tv~enl~~~~~~--~~---~~~~~~~~~~~~~~---------------------------------~~~~~~P~~~  123 (181)
                      +|+.|+.||+.++...  ..   .+++.++++.+++.                                 -++.|+|+++
T Consensus       102 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~  181 (264)
T PRK14243        102 PFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA  181 (264)
T ss_pred             cccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            8878999999875321  11   12233333333321                                 1356779999


Q ss_pred             CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEe---------CCeEEeecCCc
Q psy10472        124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ---------AGQIVEMLGQH  176 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~---------~G~i~~~~~~~  176 (181)
                      ||+.+++.+.++|..+.++.|||++||+++.+.. ||++++|+         +|++++ .++.
T Consensus       182 LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~-~~~~  243 (264)
T PRK14243        182 LDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE-FDRT  243 (264)
T ss_pred             CCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE-eCCH
Confidence            9999999999999987667899999999999865 99999998         799987 4443

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.6e-36  Score=240.41  Aligned_cols=163  Identities=26%  Similarity=0.421  Sum_probs=130.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+.+     |++|+|.++|+++....  ...+++ .++|+||++.
T Consensus        52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~  130 (286)
T PRK14275         52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRK-KIGMVFQKPN  130 (286)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhh-cEEEECCCCC
Confidence            458999999999999999999999999999999999864     49999999999875422  123343 4999999999


Q ss_pred             CccccHHHHhhcCCC--C-CC----HHHHHHHHHHhccc----c-----------------------------ccccCCC
Q psy10472         82 LFATSVRENIRYGDS--S-VS----DEQIEEAAKLANAH----G-----------------------------FISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~----~-----------------------------~~~~~P~  121 (181)
                      +|+.|+.||+.++..  . ..    .+.+.++++.+++.    +                             ++.|+|+
T Consensus       131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt  210 (286)
T PRK14275        131 PFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPT  210 (286)
T ss_pred             CCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            887899999987521  1 11    12334444444331    0                             3567799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++||+.+++.+.+.++++.++.|||++|||++++.. ||++++|++|++++.
T Consensus       211 ~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~  262 (286)
T PRK14275        211 SALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEH  262 (286)
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999987667899999999999865 999999999999873

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=238.49  Aligned_cols=163  Identities=23%  Similarity=0.406  Sum_probs=131.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCCCh-hhhccCcEEEEccCCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHLDG-TWLRGNVIGLINQEPVL   82 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~~~-~~~r~~~i~~v~q~~~l   82 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...+. ..+++ .++|+||++.+
T Consensus        34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~-~i~~v~q~~~l  112 (276)
T PRK14271         34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRR-RVGMLFQRPNP  112 (276)
T ss_pred             EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhh-heEEeccCCcc
Confidence            5699999999999999999999999999999999999986     79999999998865432 23444 49999999998


Q ss_pred             ccccHHHHhhcCCC---CCCHH----HHHHHHHHhcccc---------------------------------ccccCCCC
Q psy10472         83 FATSVRENIRYGDS---SVSDE----QIEEAAKLANAHG---------------------------------FISEFPSG  122 (181)
Q Consensus        83 ~~~tv~enl~~~~~---~~~~~----~~~~~~~~~~~~~---------------------------------~~~~~P~~  122 (181)
                      |+.|+++|+.++..   .....    .+.++++.+++..                                 ++.|+|++
T Consensus       113 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~  192 (276)
T PRK14271        113 FPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTS  192 (276)
T ss_pred             CCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            88899999987521   11221    1233444444321                                 35577999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        123 ALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       123 ~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +||+.+++.+.+.|+++.+++|||++||+++.+.. ||++++|++|++++.
T Consensus       193 ~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~  243 (276)
T PRK14271        193 ALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEE  243 (276)
T ss_pred             cCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            99999999999999887656899999999999865 999999999999873

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-35  Score=237.57  Aligned_cols=163  Identities=28%  Similarity=0.457  Sum_probs=132.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++...  +...+++ .++|+||++.
T Consensus        38 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~-~i~~v~q~~~  116 (272)
T PRK14236         38 KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRR-RVGMVFQRPN  116 (272)
T ss_pred             eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhc-cEEEEecCCc
Confidence            468999999999999999999999999999999999987     4899999999988642  2233444 5999999998


Q ss_pred             CccccHHHHhhcCCC--C-CC----HHHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472         82 LFATSVRENIRYGDS--S-VS----DEQIEEAAKLANAHG---------------------------------FISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~~---------------------------------~~~~~P~  121 (181)
                      +|+.|+.||+.++..  . ..    .+.+.++++.+++..                                 ++.|+|+
T Consensus       117 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt  196 (272)
T PRK14236        117 PFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT  196 (272)
T ss_pred             cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence            887899999986421  1 11    123445555544321                                 3557799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++||+.++..+.++++++.++.|+|++||+++.+.. ||++++|++|++++.
T Consensus       197 ~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~  248 (272)
T PRK14236        197 SALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEY  248 (272)
T ss_pred             ccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEec
Confidence            999999999999999987667899999999999865 999999999999873

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=4.6e-36  Score=259.92  Aligned_cols=142  Identities=35%  Similarity=0.580  Sum_probs=128.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.++ ...+|++ |+||||+|.+|++|++
T Consensus       348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~-i~~V~Q~~~lF~~TI~  425 (529)
T TIGR02868       348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRR-ISVFAQDAHLFDTTVR  425 (529)
T ss_pred             CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhh-eEEEccCcccccccHH
Confidence            3599999999999999999999999999999999999999999999999999999 8888865 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhccccc----------------------------------------cccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHGF----------------------------------------ISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~P~~~LD~~~  128 (181)
                      |||.++.+..++++++++++.+++.++                                        +.|+||++||+++
T Consensus       426 eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~t  505 (529)
T TIGR02868       426 DNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGT  505 (529)
T ss_pred             HHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            999998766678888888887765542                                        4456999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCc
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRL  152 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~  152 (181)
                      ++.+.+.+.+..+++|+|+|||++
T Consensus       506 e~~I~~~l~~~~~~~TvIiItHrl  529 (529)
T TIGR02868       506 ESELLEDLLAALSGKTVVVITHHL  529 (529)
T ss_pred             HHHHHHHHHHhcCCCEEEEEecCC
Confidence            999999999877899999999985

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-35  Score=234.39  Aligned_cols=163  Identities=26%  Similarity=0.418  Sum_probs=129.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-----cceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDLKHL--DGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-----~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|+     +|+|.++|+++...  ....+++ .++|+||++.
T Consensus        17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~   95 (252)
T PRK14272         17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRR-RVGMVFQKPN   95 (252)
T ss_pred             EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhc-eeEEEeccCc
Confidence            56999999999999999999999999999999999999874     89999999988642  2233444 4999999999


Q ss_pred             Cccc-cHHHHhhcCCC--C-CCHH----HHHHHHHHhccc---------------------------------cccccCC
Q psy10472         82 LFAT-SVRENIRYGDS--S-VSDE----QIEEAAKLANAH---------------------------------GFISEFP  120 (181)
Q Consensus        82 l~~~-tv~enl~~~~~--~-~~~~----~~~~~~~~~~~~---------------------------------~~~~~~P  120 (181)
                      +|+. |+.||+.++..  . ...+    ...++++.+++.                                 -++.|+|
T Consensus        96 ~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  175 (252)
T PRK14272         96 PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEP  175 (252)
T ss_pred             cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            8875 99999976421  1 1121    122222222211                                 1356779


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        121 SGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       121 ~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.
T Consensus       176 ~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  228 (252)
T PRK14272        176 TSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEH  228 (252)
T ss_pred             CccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999987667999999999999875 999999999999873

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=5.9e-36  Score=230.31  Aligned_cols=157  Identities=28%  Similarity=0.459  Sum_probs=126.2

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---hhhccCcEEEEccCCCCcc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWLRGNVIGLINQEPVLFA   84 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~~i~~v~q~~~l~~   84 (181)
                      .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++.   ...+++.++|++|++.+|+
T Consensus        10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~   89 (206)
T TIGR03608        10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE   89 (206)
T ss_pred             CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence            3569999999999999999999999999999999999999999999999998654332   2222335999999999887


Q ss_pred             -ccHHHHhhcCCC--CC----CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHH
Q psy10472         85 -TSVRENIRYGDS--SV----SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNES  128 (181)
Q Consensus        85 -~tv~enl~~~~~--~~----~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~  128 (181)
                       .|++||+.++..  ..    ..+++.++++.+++..                             ++.|+|+++||+.+
T Consensus        90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~  169 (206)
T TIGR03608        90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKN  169 (206)
T ss_pred             CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHH
Confidence             599999987421  11    1233455666555432                             35677999999999


Q ss_pred             HHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE
Q psy10472        129 EKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL  164 (181)
Q Consensus       129 ~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l  164 (181)
                      ++.+.+.++++. ++.|+|++||+++.+..||++++|
T Consensus       170 ~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l  206 (206)
T TIGR03608       170 RDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL  206 (206)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence            999999998864 489999999999977679999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=1.2e-35  Score=232.56  Aligned_cols=154  Identities=29%  Similarity=0.412  Sum_probs=127.0

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHH
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVREN   90 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~en   90 (181)
                      |+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.     + .+|+||++.+|+. |+.||
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~-~~~v~q~~~l~~~~tv~e~   74 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----D-RMVVFQNYSLLPWLTVREN   74 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----h-heEEecCcccCCCCCHHHH
Confidence            579999999999999999999999999999999999999999999998765321     1 4899999998874 99999


Q ss_pred             hhcCC----CCCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHH
Q psy10472         91 IRYGD----SSVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQ  133 (181)
Q Consensus        91 l~~~~----~~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~  133 (181)
                      +.++.    .....    +.+.++++.+++..                             ++.|+|+++||+.+++.+.
T Consensus        75 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~  154 (230)
T TIGR01184        75 IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ  154 (230)
T ss_pred             HHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence            97641    11121    23455566555432                             3567799999999999999


Q ss_pred             HHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        134 AALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       134 ~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      +.|.++. + |+|||++||+++.+.. ||++++|++|++++
T Consensus       155 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~  195 (230)
T TIGR01184       155 EELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAAN  195 (230)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEec
Confidence            9998763 3 8999999999999865 99999999999976

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-35  Score=254.70  Aligned_cols=163  Identities=25%  Similarity=0.393  Sum_probs=134.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....+++.++|+||++.+++. |+
T Consensus        17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv   96 (501)
T PRK11288         17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTV   96 (501)
T ss_pred             EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCH
Confidence            46999999999999999999999999999999999999999999999999986544332223359999999988875 99


Q ss_pred             HHHhhcCCC----C-CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         88 RENIRYGDS----S-VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        88 ~enl~~~~~----~-~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                      .+|+.++..    . ..    .+++.++++.+++..                             ++.|+||++||+.++
T Consensus        97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~  176 (501)
T PRK11288         97 AENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREI  176 (501)
T ss_pred             HHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHH
Confidence            999987531    1 11    234556666665532                             356779999999999


Q ss_pred             HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      +.+.++|+++. +|+|||+||||++++.. ||++++|++|+++.
T Consensus       177 ~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~  220 (501)
T PRK11288        177 EQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA  220 (501)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            99999998864 58999999999999866 99999999999976

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=1.4e-35  Score=229.64  Aligned_cols=156  Identities=26%  Similarity=0.371  Sum_probs=127.2

Q ss_pred             eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC----hhhhccCcEEEEccCCCCccc-cHH
Q psy10472         14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD----GTWLRGNVIGLINQEPVLFAT-SVR   88 (181)
Q Consensus        14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~r~~~i~~v~q~~~l~~~-tv~   88 (181)
                      |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++....    ....++ .++|+||++.+|+. |+.
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~~t~~   93 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR-KIGLVFQQYALFPHLNVR   93 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh-cEEEEecCCccCCCCCHH
Confidence            99999999 999999999999999999999999999999999999875322    112333 49999999998864 999


Q ss_pred             HHhhcCCCCC----CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472         89 ENIRYGDSSV----SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAA  135 (181)
Q Consensus        89 enl~~~~~~~----~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~  135 (181)
                      +|+.++....    ..+++.++++.+++..                             ++.|+||++||+.+++.+.++
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  173 (214)
T cd03297          94 ENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE  173 (214)
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence            9998753211    1233455666555432                             356779999999999999999


Q ss_pred             HHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        136 LESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       136 l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      ++++. + |+|+|++||+++++.. ||++++|++|++++
T Consensus       174 l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  212 (214)
T cd03297         174 LKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY  212 (214)
T ss_pred             HHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence            98864 3 8999999999999865 99999999999976

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=1.8e-35  Score=231.52  Aligned_cols=159  Identities=30%  Similarity=0.398  Sum_probs=127.9

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC----CcceEEECCEECCCCChhhhccCcEEEEccCCC--Ccc
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV----SSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFA   84 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p----~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~   84 (181)
                      +++|+||+|++|++++|+||||||||||+++|+|+++|    ++|+|.++|+++...   ..+++.++|++|++.  +++
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~---~~~~~~i~~~~q~~~~~~~~   77 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL---SIRGRHIATIMQNPRTAFNP   77 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh---hhhhheeEEEecCchhhcCc
Confidence            58999999999999999999999999999999999999    899999999987543   233335999999985  344


Q ss_pred             -ccHHHHhhcCCC---CCC---HHHHHHHHHHhccc---c-----------------------------ccccCCCCCCC
Q psy10472         85 -TSVRENIRYGDS---SVS---DEQIEEAAKLANAH---G-----------------------------FISEFPSGALD  125 (181)
Q Consensus        85 -~tv~enl~~~~~---~~~---~~~~~~~~~~~~~~---~-----------------------------~~~~~P~~~LD  125 (181)
                       .|+.+|+.+...   ...   .+++.++++.+++.   .                             ++.|+||++||
T Consensus        78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD  157 (230)
T TIGR02770        78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD  157 (230)
T ss_pred             ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence             489998764311   111   23355666666554   1                             35577999999


Q ss_pred             HHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        126 NESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       126 ~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +.+++.+.+.++++. + ++|||++||+++.+.. ||++++|++|++++.
T Consensus       158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  207 (230)
T TIGR02770       158 VVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVER  207 (230)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999998864 3 7999999999999865 999999999999873

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=1.9e-35  Score=235.09  Aligned_cols=164  Identities=22%  Similarity=0.312  Sum_probs=129.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE-----CCCCChhhh---ccCcEEEEccCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD-----LKHLDGTWL---RGNVIGLINQEP   80 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~-----i~~~~~~~~---r~~~i~~v~q~~   80 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++     +...+....   +++.++|+||++
T Consensus        19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~   98 (258)
T PRK11701         19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP   98 (258)
T ss_pred             ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCc
Confidence            469999999999999999999999999999999999999999999999998     665543321   233599999998


Q ss_pred             C--Ccc-ccHHHHhhcCC---CCCC----HHHHHHHHHHhcccc------------------------------ccccCC
Q psy10472         81 V--LFA-TSVRENIRYGD---SSVS----DEQIEEAAKLANAHG------------------------------FISEFP  120 (181)
Q Consensus        81 ~--l~~-~tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~------------------------------~~~~~P  120 (181)
                      .  ++. .|+.+|+.+..   ....    .+.+.++++.+++..                              ++.|+|
T Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEP  178 (258)
T PRK11701         99 RDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEP  178 (258)
T ss_pred             ccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            4  444 38888876421   1111    223445555555421                              355779


Q ss_pred             CCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        121 SGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       121 ~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +++||+.+++.+.+.++.+. + |.|+|++||+++.+.. ||++++|++|++++.
T Consensus       179 t~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~  233 (258)
T PRK11701        179 TGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES  233 (258)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence            99999999999999998764 3 8999999999999975 999999999999873

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-35  Score=237.54  Aligned_cols=163  Identities=29%  Similarity=0.500  Sum_probs=131.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~   81 (181)
                      +.+|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++...  +...+++ .++|+||++.
T Consensus        52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~-~i~~v~q~~~  130 (285)
T PRK14254         52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRR-RIGMVFQKPN  130 (285)
T ss_pred             EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhc-cEEEEecCCc
Confidence            469999999999999999999999999999999999987     6899999999987542  2233444 5999999998


Q ss_pred             CccccHHHHhhcCCC--CC---CHHHHHHHHHHhcccc---------------------------------ccccCCCCC
Q psy10472         82 LFATSVRENIRYGDS--SV---SDEQIEEAAKLANAHG---------------------------------FISEFPSGA  123 (181)
Q Consensus        82 l~~~tv~enl~~~~~--~~---~~~~~~~~~~~~~~~~---------------------------------~~~~~P~~~  123 (181)
                      +|+.|+.||+.++..  ..   ..++++++++.+++..                                 ++.|+|+++
T Consensus       131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~  210 (285)
T PRK14254        131 PFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASA  210 (285)
T ss_pred             cCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence            887899999986421  11   1234455565554320                                 355779999


Q ss_pred             CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEE-EEeCCeEEee
Q psy10472        124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIV-VLQAGQIVEM  172 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~-~l~~G~i~~~  172 (181)
                      ||+.+++.+.++|+++.++.|+|++||+++.+.. |||++ +|++|++++.
T Consensus       211 LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~  261 (285)
T PRK14254        211 LDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEF  261 (285)
T ss_pred             CCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEe
Confidence            9999999999999987656899999999999865 99975 5799999873

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-35  Score=234.56  Aligned_cols=166  Identities=28%  Similarity=0.432  Sum_probs=132.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+|+||||||||+|+|+|+++|     ++|+|.++|+++...  ....+++ .++|+||++.
T Consensus        20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~v~q~~~   98 (259)
T PRK14260         20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRR-QIGMVFQRPN   98 (259)
T ss_pred             eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhh-heEEEecccc
Confidence            4689999999999999999999999999999999999985     489999999987532  2233444 4999999999


Q ss_pred             CccccHHHHhhcCCC---CCC----HHHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472         82 LFATSVRENIRYGDS---SVS----DEQIEEAAKLANAHG---------------------------------FISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~---~~~----~~~~~~~~~~~~~~~---------------------------------~~~~~P~  121 (181)
                      +|+.|+.||+.++..   ...    .+.+.++++.+++..                                 ++.|+||
T Consensus        99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt  178 (259)
T PRK14260         99 PFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC  178 (259)
T ss_pred             cCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            888899999976421   111    123344555444310                                 3557799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEe-----CCeEEeecCCc
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ-----AGQIVEMLGQH  176 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~-----~G~i~~~~~~~  176 (181)
                      ++||+.++..+.+.|+.+.+++|+|++||+++++.. ||++++|+     +|++++ .++.
T Consensus       179 ~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~  238 (259)
T PRK14260        179 SALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE-FGVT  238 (259)
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE-eCCH
Confidence            999999999999999887667999999999999865 99999998     599987 4443

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=4.8e-35  Score=224.75  Aligned_cols=164  Identities=29%  Similarity=0.384  Sum_probs=132.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC--CCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--YDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl--~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +++++++||++++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++...+....++..++|+||++.+++. 
T Consensus        13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   92 (200)
T cd03217          13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGV   92 (200)
T ss_pred             EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCc
Confidence            4699999999999999999999999999999999999  5899999999999987766444333349999999988876 


Q ss_pred             cHHHHhhcCCCCCC---HHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh--cC
Q psy10472         86 SVRENIRYGDSSVS---DEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQ--NA  158 (181)
Q Consensus        86 tv~enl~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~--~~  158 (181)
                      ++.+++.......+   .+++.-+...+ +..-++.|+||++||+.++..+.++|+++. +++|+|++||+++.+.  .|
T Consensus        93 ~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~  172 (200)
T cd03217          93 KNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKP  172 (200)
T ss_pred             cHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhC
Confidence            88888743221222   22222222222 334467899999999999999999998875 4899999999999986  69


Q ss_pred             CeEEEEeCCeEEee
Q psy10472        159 DLIVVLQAGQIVEM  172 (181)
Q Consensus       159 d~v~~l~~G~i~~~  172 (181)
                      |++++|++|++++.
T Consensus       173 d~i~~l~~G~i~~~  186 (200)
T cd03217         173 DRVHVLYDGRIVKS  186 (200)
T ss_pred             CEEEEEECCEEEEE
Confidence            99999999999873

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=3.7e-35  Score=235.15  Aligned_cols=163  Identities=29%  Similarity=0.409  Sum_probs=131.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC--------cceEEECCEECCCCChhhhccCcEEEEccCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS--------SGNITISGVDLKHLDGTWLRGNVIGLINQEP   80 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~--------~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~   80 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|+        +|+|.++|+++...+...+++ .++|+||++
T Consensus        14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~~v~q~~   92 (272)
T PRK13547         14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLAR-LRAVLPQAA   92 (272)
T ss_pred             EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHh-hcEEecccC
Confidence            46999999999999999999999999999999999999998        999999999887655544454 489999998


Q ss_pred             CC-ccccHHHHhhcCCCC-------C---CHHHHHHHHHHhcc-------------------------------------
Q psy10472         81 VL-FATSVRENIRYGDSS-------V---SDEQIEEAAKLANA-------------------------------------  112 (181)
Q Consensus        81 ~l-~~~tv~enl~~~~~~-------~---~~~~~~~~~~~~~~-------------------------------------  112 (181)
                      .+ ++.|+.||+.++...       .   ..+.+.++++.+++                                     
T Consensus        93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~  172 (272)
T PRK13547         93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQP  172 (272)
T ss_pred             CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCC
Confidence            64 557999999875210       0   11223444433322                                     


Q ss_pred             -ccccccCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        113 -HGFISEFPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       113 -~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                       .-++.|+||++||+.+++.+.++++++. + ++|+|+|||+++.+.. ||++++|++|++++.
T Consensus       173 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~  236 (272)
T PRK13547        173 PRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH  236 (272)
T ss_pred             CCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence             2244578999999999999999998864 4 8999999999999865 999999999999873

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-35  Score=235.21  Aligned_cols=166  Identities=27%  Similarity=0.431  Sum_probs=131.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++...  ....+++ .++|+||++.
T Consensus        33 ~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~-~i~~v~q~~~  111 (274)
T PRK14265         33 FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRR-QVGMVFQRPN  111 (274)
T ss_pred             eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhh-cEEEEccCCc
Confidence            4689999999999999999999999999999999999863     699999999987532  2223344 4999999998


Q ss_pred             CccccHHHHhhcCCCC--C---CHHHHHHHHHHhccc---------------------------------cccccCCCCC
Q psy10472         82 LFATSVRENIRYGDSS--V---SDEQIEEAAKLANAH---------------------------------GFISEFPSGA  123 (181)
Q Consensus        82 l~~~tv~enl~~~~~~--~---~~~~~~~~~~~~~~~---------------------------------~~~~~~P~~~  123 (181)
                      +|+.|+.+|+.++...  .   ..+.+.++++.+++.                                 -++.|+|+++
T Consensus       112 l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~  191 (274)
T PRK14265        112 PFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSA  191 (274)
T ss_pred             cccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence            8877999999875211  1   112233344443321                                 1356779999


Q ss_pred             CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEe---------CCeEEeecCCc
Q psy10472        124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ---------AGQIVEMLGQH  176 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~---------~G~i~~~~~~~  176 (181)
                      ||+.+++.+.++|+++.++.|||++|||++.+.. ||++++|+         +|++++ .++.
T Consensus       192 LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~-~g~~  253 (274)
T PRK14265        192 LDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE-FSPT  253 (274)
T ss_pred             CCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE-eCCH
Confidence            9999999999999987667999999999999865 99999998         899988 4443

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=6.3e-36  Score=249.51  Aligned_cols=169  Identities=37%  Similarity=0.582  Sum_probs=148.2

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV   87 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv   87 (181)
                      .+++++++||++.+||.++|+||||||||||.|+|.|..+|.+|.|.+||-++.+++...+-++ |||+||+-.||++||
T Consensus       348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~h-iGYLPQdVeLF~GTI  426 (580)
T COG4618         348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRH-IGYLPQDVELFDGTI  426 (580)
T ss_pred             CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccc-cCcCcccceecCCcH
Confidence            3689999999999999999999999999999999999999999999999999999998888765 999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHhccccc----------------------------------------cccCCCCCCCHH
Q psy10472         88 RENIRYGDSSVSDEQIEEAAKLANAHGF----------------------------------------ISEFPSGALDNE  127 (181)
Q Consensus        88 ~enl~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~P~~~LD~~  127 (181)
                      .|||+-.....+.+.+.++.+..+..++                                        +.|+|.++||.+
T Consensus       427 aeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~  506 (580)
T COG4618         427 AENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSE  506 (580)
T ss_pred             HHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchh
Confidence            9999865555666777777766654442                                        456699999999


Q ss_pred             HHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472        128 SEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       128 ~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      .+..+.+.|...+ +|.|+|+|||.++.+..+|+|++|++|++.. +++.++
T Consensus       507 GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~-FG~r~e  557 (580)
T COG4618         507 GEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAA-FGPREE  557 (580)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHh-cCCHHH
Confidence            9999999998764 6999999999999999999999999999876 555443

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-35  Score=233.08  Aligned_cols=163  Identities=28%  Similarity=0.432  Sum_probs=129.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC--C---CcceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD--V---SSGNITISGVDLKHL--DGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~--p---~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|.+||+++|+||||||||||+++|+|+.+  |   ++|+|.++|+++...  ....+++ .++|+||++.
T Consensus        18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~   96 (252)
T PRK14255         18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRK-QVGMVFQQPN   96 (252)
T ss_pred             eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcC-eEEEEECCCc
Confidence            469999999999999999999999999999999999975  5   599999999988532  2223444 5999999998


Q ss_pred             CccccHHHHhhcCC--CC-CC----HHHHHHHHHHhccc---------------------------------cccccCCC
Q psy10472         82 LFATSVRENIRYGD--SS-VS----DEQIEEAAKLANAH---------------------------------GFISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~--~~-~~----~~~~~~~~~~~~~~---------------------------------~~~~~~P~  121 (181)
                      +|+.|+++|+.++.  .. ..    .+.+.++++.+++.                                 -++.|+|+
T Consensus        97 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt  176 (252)
T PRK14255         97 PFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT  176 (252)
T ss_pred             cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            88889999998642  11 11    12233333333221                                 13567799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++||+.+++.+.++|+++.++.|+|+|||+++.+.. ||++++|++|++++.
T Consensus       177 ~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~  228 (252)
T PRK14255        177 SALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEF  228 (252)
T ss_pred             ccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999887656899999999999865 999999999999873

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=1.1e-34  Score=229.67  Aligned_cols=161  Identities=22%  Similarity=0.348  Sum_probs=129.3

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccHH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSVR   88 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv~   88 (181)
                      .+|+++||+|++||+++|+||||||||||+++|+|+++ .+|+|.++|+++...+...+++ .++|+||++.++. .|+.
T Consensus        10 ~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~-~i~~v~q~~~~~~~~tv~   87 (248)
T PRK03695         10 TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELAR-HRAYLSQQQTPPFAMPVF   87 (248)
T ss_pred             ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhh-heEEecccCccCCCccHH
Confidence            37999999999999999999999999999999999986 4999999999987665555444 4899999986664 5999


Q ss_pred             HHhhcCCCC-CC----HHHHHHHHHHhc------------------------------------cccccccCCCCCCCHH
Q psy10472         89 ENIRYGDSS-VS----DEQIEEAAKLAN------------------------------------AHGFISEFPSGALDNE  127 (181)
Q Consensus        89 enl~~~~~~-~~----~~~~~~~~~~~~------------------------------------~~~~~~~~P~~~LD~~  127 (181)
                      +|+.++... ..    .+++.++++.++                                    ..-++.|+|+++||+.
T Consensus        88 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~  167 (248)
T PRK03695         88 QYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVA  167 (248)
T ss_pred             HHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHH
Confidence            999875321 11    122333333221                                    1334568899999999


Q ss_pred             HHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        128 SEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       128 ~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +++.+.++++++. ++.|+|++||+++.+.. ||++++|++|++++.
T Consensus       168 ~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~  214 (248)
T PRK03695        168 QQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS  214 (248)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999998875 58999999999998855 999999999999873

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=4.9e-35  Score=223.77  Aligned_cols=159  Identities=29%  Similarity=0.440  Sum_probs=129.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC--CCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY--DVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~--~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|++  +|++|+|.++|+++..   ..+++ .++|+||++.+|+. 
T Consensus        22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~~~~-~i~~~~q~~~~~~~~   97 (194)
T cd03213          22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSFRK-IIGYVPQDDILHPTL   97 (194)
T ss_pred             ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hhhhh-eEEEccCcccCCCCC
Confidence            56999999999999999999999999999999999999  9999999999998753   23344 49999999988875 


Q ss_pred             cHHHHhhcCCC--CCC---HHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCch-hhh-
Q psy10472         86 SVRENIRYGDS--SVS---DEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLS-TVQ-  156 (181)
Q Consensus        86 tv~enl~~~~~--~~~---~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~-~~~-  156 (181)
                      |+.||+.++..  ..+   .+++.-+...+ ...-++.|+|+++||+.+++.+.++++++. +++|+|++||+++ .+. 
T Consensus        98 t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~  177 (194)
T cd03213          98 TVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFE  177 (194)
T ss_pred             cHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHH
Confidence            99999986421  122   22222222222 334467899999999999999999998865 4899999999996 565 


Q ss_pred             cCCeEEEEeCCeEEe
Q psy10472        157 NADLIVVLQAGQIVE  171 (181)
Q Consensus       157 ~~d~v~~l~~G~i~~  171 (181)
                      .||++++|++|++.+
T Consensus       178 ~~d~v~~l~~G~i~~  192 (194)
T cd03213         178 LFDKLLLLSQGRVIY  192 (194)
T ss_pred             hcCEEEEEeCCEEEe
Confidence            499999999999875

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-35  Score=233.67  Aligned_cols=163  Identities=26%  Similarity=0.420  Sum_probs=131.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCC----CChhhhccCcEEEEccC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKH----LDGTWLRGNVIGLINQE   79 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~----~~~~~~r~~~i~~v~q~   79 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+.+|     ++|+|.++|.++..    .....+++ .++|+||+
T Consensus        29 ~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~-~i~~~~q~  107 (265)
T PRK14252         29 YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRM-RISMVFQK  107 (265)
T ss_pred             eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhc-cEEEEccC
Confidence            4699999999999999999999999999999999999875     79999999987642    12223444 49999999


Q ss_pred             CCCccccHHHHhhcCCC--CC-----CHHHHHHHHHHhccc----c-----------------------------ccccC
Q psy10472         80 PVLFATSVRENIRYGDS--SV-----SDEQIEEAAKLANAH----G-----------------------------FISEF  119 (181)
Q Consensus        80 ~~l~~~tv~enl~~~~~--~~-----~~~~~~~~~~~~~~~----~-----------------------------~~~~~  119 (181)
                      +.+|+.|++||+.++..  ..     ..+.+..+++.+++.    .                             ++.|+
T Consensus       108 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  187 (265)
T PRK14252        108 PNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDE  187 (265)
T ss_pred             CcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            99888899999986521  11     123344455444431    0                             35577


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        120 PSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       120 P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      |+++||+.+++.+.+.++++.++.|+|+|||+++++.. ||++++|++|++++.
T Consensus       188 Pt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~  241 (265)
T PRK14252        188 PTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEF  241 (265)
T ss_pred             CCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            99999999999999999987667899999999999865 999999999999874

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.8e-35  Score=252.74  Aligned_cols=164  Identities=27%  Similarity=0.376  Sum_probs=134.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC--CcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV--SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p--~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|  ++|+|.++|+++...+....+++.++|+||++.+++. 
T Consensus        14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   93 (500)
T TIGR02633        14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPEL   93 (500)
T ss_pred             eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCC
Confidence            5699999999999999999999999999999999999987  7999999999987655443333459999999988875 


Q ss_pred             cHHHHhhcCCCC------CC----HHHHHHHHHHhcccc------------------------------ccccCCCCCCC
Q psy10472         86 SVRENIRYGDSS------VS----DEQIEEAAKLANAHG------------------------------FISEFPSGALD  125 (181)
Q Consensus        86 tv~enl~~~~~~------~~----~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD  125 (181)
                      |+.||+.++...      ..    .+++.++++.+++..                              ++.|+||++||
T Consensus        94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD  173 (500)
T TIGR02633        94 SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT  173 (500)
T ss_pred             cHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence            999999875311      11    123455666665532                              34567999999


Q ss_pred             HHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        126 NESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       126 ~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +.+++.+.++|++++ +|+|||+||||++++.. ||++++|++|+++..
T Consensus       174 ~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~  222 (500)
T TIGR02633       174 EKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT  222 (500)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence            999999999998864 58999999999999866 999999999999863

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=5.8e-35  Score=228.07  Aligned_cols=160  Identities=28%  Similarity=0.441  Sum_probs=128.4

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC---CCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA   84 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~---p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~   84 (181)
                      .+++++++||+|++||+++|+||||||||||+++|+|+++   |++|+|.++|+++..   ..+++ .++|+||++.+|+
T Consensus        19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~---~~~~~-~i~~~~q~~~~~~   94 (226)
T cd03234          19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQFQK-CVAYVRQDDILLP   94 (226)
T ss_pred             ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh---HHhcc-cEEEeCCCCccCc
Confidence            3679999999999999999999999999999999999999   999999999998742   23444 5999999999888


Q ss_pred             c-cHHHHhhcCCC----C-CCH----HHHHH-HHHHhcccc-----------------------------ccccCCCCCC
Q psy10472         85 T-SVRENIRYGDS----S-VSD----EQIEE-AAKLANAHG-----------------------------FISEFPSGAL  124 (181)
Q Consensus        85 ~-tv~enl~~~~~----~-~~~----~~~~~-~~~~~~~~~-----------------------------~~~~~P~~~L  124 (181)
                      . |+.||+.++..    . ...    ....+ .++.+++..                             ++.|+|+++|
T Consensus        95 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gL  174 (226)
T cd03234          95 GLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGL  174 (226)
T ss_pred             CCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCC
Confidence            6 99999986421    1 011    11222 444433321                             3557799999


Q ss_pred             CHHHHHHHHHHHHHhc-CCcEEEEEecCc-hhhh-cCCeEEEEeCCeEEe
Q psy10472        125 DNESEKLVQAALESAC-KGRTVLMIAHRL-STVQ-NADLIVVLQAGQIVE  171 (181)
Q Consensus       125 D~~~~~~i~~~l~~~~-~~~tii~vtHd~-~~~~-~~d~v~~l~~G~i~~  171 (181)
                      |+.++..+.++++++. ++.|+|++||++ +.+. .||++++|++|++++
T Consensus       175 D~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~  224 (226)
T cd03234         175 DSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY  224 (226)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence            9999999999998864 489999999998 4664 599999999999986

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=5.5e-35  Score=223.09  Aligned_cols=158  Identities=24%  Similarity=0.413  Sum_probs=127.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC--CCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY--DVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~--~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|++  +|++|+|.++|+++.    ...++ .++|++|++.+|+. 
T Consensus        20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~~-~i~~~~q~~~~~~~~   94 (192)
T cd03232          20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQR-STGYVEQQDVHSPNL   94 (192)
T ss_pred             eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhhh-ceEEecccCccccCC
Confidence            46999999999999999999999999999999999986  489999999999874    23343 49999999988875 


Q ss_pred             cHHHHhhcCCC--CCC---HHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchh-h-h
Q psy10472         86 SVRENIRYGDS--SVS---DEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLST-V-Q  156 (181)
Q Consensus        86 tv~enl~~~~~--~~~---~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~-~-~  156 (181)
                      |++||+.++..  ..+   .+++.-+...+ ...-++.|+|+++||+.+++.+++.+++++ +++|+|++||+++. + .
T Consensus        95 tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~  174 (192)
T cd03232          95 TVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFE  174 (192)
T ss_pred             cHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHh
Confidence            99999987421  122   22222222222 234467899999999999999999998865 48999999999984 5 4


Q ss_pred             cCCeEEEEeC-CeEEe
Q psy10472        157 NADLIVVLQA-GQIVE  171 (181)
Q Consensus       157 ~~d~v~~l~~-G~i~~  171 (181)
                      .||++++|++ |++++
T Consensus       175 ~~d~i~~l~~~g~i~~  190 (192)
T cd03232         175 KFDRLLLLKRGGKTVY  190 (192)
T ss_pred             hCCEEEEEcCCCeEEe
Confidence            5999999999 99976

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.3e-35  Score=230.59  Aligned_cols=163  Identities=29%  Similarity=0.477  Sum_probs=131.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+..     |++|+|.++|+++...+  ....++ .++|+||++.
T Consensus        16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~-~i~~~~q~~~   94 (250)
T PRK14266         16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRK-KVGMVFQKPN   94 (250)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhh-heEEEecCCc
Confidence            469999999999999999999999999999999999864     48999999999876422  233444 4999999999


Q ss_pred             CccccHHHHhhcCCC---CCCH----HHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472         82 LFATSVRENIRYGDS---SVSD----EQIEEAAKLANAHG---------------------------------FISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~---~~~~----~~~~~~~~~~~~~~---------------------------------~~~~~P~  121 (181)
                      +|+.|+.+|+.++..   ....    +++.++++.+++..                                 ++.|+|+
T Consensus        95 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~  174 (250)
T PRK14266         95 PFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPC  174 (250)
T ss_pred             cCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            888899999986521   1111    22334444443311                                 3557799


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++||+.++..+.++|+++.++.|||++||+++.+.. ||++++|++|++++.
T Consensus       175 ~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~  226 (250)
T PRK14266        175 SALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIES  226 (250)
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEe
Confidence            999999999999999987668999999999999866 999999999999873

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.5e-35  Score=233.37  Aligned_cols=166  Identities=27%  Similarity=0.451  Sum_probs=132.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-----cceEEECCEECCCC--ChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-----SGNITISGVDLKHL--DGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-----~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~~   81 (181)
                      ..+|+|+||+|++||+++|+||||||||||+++|+|+++|+     +|+|.++|+++...  +...+++ .++|+||++.
T Consensus        20 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~-~i~~~~q~~~   98 (261)
T PRK14258         20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRR-QVSMVHPKPN   98 (261)
T ss_pred             eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhc-cEEEEecCCc
Confidence            46899999999999999999999999999999999999985     89999999987432  2233444 4999999998


Q ss_pred             CccccHHHHhhcCCC--C-CC----HHHHHHHHHHhcccc---------------------------------ccccCCC
Q psy10472         82 LFATSVRENIRYGDS--S-VS----DEQIEEAAKLANAHG---------------------------------FISEFPS  121 (181)
Q Consensus        82 l~~~tv~enl~~~~~--~-~~----~~~~~~~~~~~~~~~---------------------------------~~~~~P~  121 (181)
                      +|+.|+.||+.++..  . ..    .+.+.++++.+++..                                 ++.|+|+
T Consensus        99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~  178 (261)
T PRK14258         99 LFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC  178 (261)
T ss_pred             cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            888899999976421  1 11    223445555554321                                 3557799


Q ss_pred             CCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeC-----CeEEeecCCc
Q psy10472        122 GALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA-----GQIVEMLGQH  176 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~-----G~i~~~~~~~  176 (181)
                      ++||+.+++.+.+.++.++  ++.|+|+|||+++.+.. ||++++|++     |++++ .++.
T Consensus       179 ~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~  240 (261)
T PRK14258        179 FGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE-FGLT  240 (261)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE-eCCH
Confidence            9999999999999998753  48999999999999865 999999999     99987 4444

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-35  Score=259.07  Aligned_cols=163  Identities=25%  Similarity=0.320  Sum_probs=134.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCC--CCc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEP--VLF   83 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~--~l~   83 (181)
                      ..+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..   .+++ .|+|+||++  .++
T Consensus       337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~-~i~~v~Q~~~~~l~  415 (623)
T PRK10261        337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRR-DIQFIFQDPYASLD  415 (623)
T ss_pred             eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcC-CeEEEecCchhhcC
Confidence            3589999999999999999999999999999999999999999999999998765432   2333 599999997  467


Q ss_pred             cc-cHHHHhhcCC---CCCC----HHHHHHHHHHhccc-c-----------------------------ccccCCCCCCC
Q psy10472         84 AT-SVRENIRYGD---SSVS----DEQIEEAAKLANAH-G-----------------------------FISEFPSGALD  125 (181)
Q Consensus        84 ~~-tv~enl~~~~---~~~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD  125 (181)
                      +. ||.+|+.++.   ....    .+++.++++.+++. .                             ++.|+||++||
T Consensus       416 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD  495 (623)
T PRK10261        416 PRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD  495 (623)
T ss_pred             CCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            64 9999997642   1111    23455667776663 2                             35677999999


Q ss_pred             HHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        126 NESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       126 ~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +.++..++++|+++. + |.|||+||||++.+.. ||+|++|++|++++.
T Consensus       496 ~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~  545 (623)
T PRK10261        496 VSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI  545 (623)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999998864 3 8999999999999866 999999999999873

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.8e-35  Score=232.31  Aligned_cols=165  Identities=26%  Similarity=0.468  Sum_probs=131.9

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC------EECCCCChhhhccCcEEEEccCC
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG------VDLKHLDGTWLRGNVIGLINQEP   80 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g------~~i~~~~~~~~r~~~i~~v~q~~   80 (181)
                      +.+++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|      +++...+...+++ .++|+||++
T Consensus        21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~-~i~~~~q~~   99 (257)
T PRK14246         21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRK-EVGMVFQQP   99 (257)
T ss_pred             CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhc-ceEEEccCC
Confidence            335699999999999999999999999999999999999999997777666      4444344444454 499999999


Q ss_pred             CCccc-cHHHHhhcCCC---CCCH----HHHHHHHHHhcccc---------------------------------ccccC
Q psy10472         81 VLFAT-SVRENIRYGDS---SVSD----EQIEEAAKLANAHG---------------------------------FISEF  119 (181)
Q Consensus        81 ~l~~~-tv~enl~~~~~---~~~~----~~~~~~~~~~~~~~---------------------------------~~~~~  119 (181)
                      .+|+. |+++|+.++..   ....    +.+.++++.+++..                                 ++.|+
T Consensus       100 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDE  179 (257)
T PRK14246        100 NPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDE  179 (257)
T ss_pred             ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence            98875 99999987521   1111    23455566655521                                 24567


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        120 PSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       120 P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ||++||+.+++.+.+.+.++.++.|+|+|||+++.+.. ||++++|++|++++.
T Consensus       180 Pt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~  233 (257)
T PRK14246        180 PTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEW  233 (257)
T ss_pred             CCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999887667999999999999955 999999999999874

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=9.4e-35  Score=230.13  Aligned_cols=167  Identities=26%  Similarity=0.378  Sum_probs=133.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC--CCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--YDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl--~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|.++...+....++..++|+||++.+++. 
T Consensus        20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~   99 (252)
T CHL00131         20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGV   99 (252)
T ss_pred             EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccc
Confidence            4699999999999999999999999999999999998  6899999999999987665444333248899999988876 


Q ss_pred             cHHHHhhcCCCC---------CC----HHHHHHHHHHhcccc-------------------------------ccccCCC
Q psy10472         86 SVRENIRYGDSS---------VS----DEQIEEAAKLANAHG-------------------------------FISEFPS  121 (181)
Q Consensus        86 tv~enl~~~~~~---------~~----~~~~~~~~~~~~~~~-------------------------------~~~~~P~  121 (181)
                      |+.+|+.+....         ..    .+.+.++++.+++..                               ++.|+||
T Consensus       100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  179 (252)
T CHL00131        100 SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETD  179 (252)
T ss_pred             cHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence            899998754210         01    123345555544421                               3456799


Q ss_pred             CCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc--CCeEEEEeCCeEEeecCCc
Q psy10472        122 GALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~--~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++||+.+++.+.++|+++. +|.|||++||+++.+..  ||++++|++|++++. +++
T Consensus       180 ~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~-~~~  236 (252)
T CHL00131        180 SGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT-GDA  236 (252)
T ss_pred             ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe-cCh
Confidence            9999999999999998864 58999999999998864  899999999999873 443

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.6e-35  Score=251.81  Aligned_cols=162  Identities=17%  Similarity=0.338  Sum_probs=132.6

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh-hhccCcEEEEccCC---CCccc
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT-WLRGNVIGLINQEP---VLFAT   85 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~~i~~v~q~~---~l~~~   85 (181)
                      .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ..++ .++|+||++   .+++.
T Consensus       277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~-~i~~v~q~~~~~~~~~~  355 (510)
T PRK09700        277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK-GMAYITESRRDNGFFPN  355 (510)
T ss_pred             CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC-CcEEccCccccCCCcCC
Confidence            489999999999999999999999999999999999999999999999988654432 2333 499999984   57765


Q ss_pred             -cHHHHhhcCCCC------------CC---HHHHHHHHHHhccc-c-----------------------------ccccC
Q psy10472         86 -SVRENIRYGDSS------------VS---DEQIEEAAKLANAH-G-----------------------------FISEF  119 (181)
Q Consensus        86 -tv~enl~~~~~~------------~~---~~~~~~~~~~~~~~-~-----------------------------~~~~~  119 (181)
                       |+.||+.++...            ..   .+.+.++++.+++. +                             ++.|+
T Consensus       356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE  435 (510)
T PRK09700        356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE  435 (510)
T ss_pred             CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC
Confidence             999999875210            01   12345667777664 2                             35577


Q ss_pred             CCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        120 PSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       120 P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ||++||+.+++.++++|+++. +|.|||+||||++.+.. ||++++|++|+++..
T Consensus       436 Pt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~  490 (510)
T PRK09700        436 PTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI  490 (510)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence            999999999999999998864 58999999999999865 999999999999874

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=6.5e-35  Score=253.75  Aligned_cols=163  Identities=21%  Similarity=0.284  Sum_probs=135.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++ ++|++|++.+|++|++
T Consensus       336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~-i~~v~q~~~lf~~ti~  414 (547)
T PRK10522        336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL-FSAVFTDFHLFDQLLG  414 (547)
T ss_pred             CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhh-eEEEecChhHHHHhhc
Confidence            358999999999999999999999999999999999999999999999999988887777765 9999999999999998


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcc----------------------------------ccccccCCCCCCCHHHHHHHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANA----------------------------------HGFISEFPSGALDNESEKLVQA  134 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~P~~~LD~~~~~~i~~  134 (181)
                      +|   + ...+++.++++++.+++                                  .-++.|+||++||+++++.+.+
T Consensus       415 ~n---~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~  490 (547)
T PRK10522        415 PE---G-KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQ  490 (547)
T ss_pred             cc---c-CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence            88   1 11223333333333222                                  1145678999999999999999


Q ss_pred             HHHHh-c-CCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472        135 ALESA-C-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       135 ~l~~~-~-~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~  176 (181)
                      .+.+. + +++|+|+|||+++.+..||++++|++|++++..+.+
T Consensus       491 ~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~  534 (547)
T PRK10522        491 VLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEE  534 (547)
T ss_pred             HHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCc
Confidence            88653 3 489999999999988889999999999999865543

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=1.6e-34  Score=224.39  Aligned_cols=159  Identities=23%  Similarity=0.344  Sum_probs=125.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---hhhccCcEEEEccCCCCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWLRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~~i~~v~q~~~l~~~   85 (181)
                      .++++++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++...+.   ...+++.++|++|++.+|+.
T Consensus        14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   93 (218)
T cd03290          14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNA   93 (218)
T ss_pred             CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccc
Confidence            469999999999999999999999999999999999999999999999988754432   11122359999999988877


Q ss_pred             cHHHHhhcCCCCCCHHHHHHHHHHhccc----------------------------------------cccccCCCCCCC
Q psy10472         86 SVRENIRYGDSSVSDEQIEEAAKLANAH----------------------------------------GFISEFPSGALD  125 (181)
Q Consensus        86 tv~enl~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~P~~~LD  125 (181)
                      |++||+.++... ..++..++++.+++.                                        -++.|+|+++||
T Consensus        94 t~~~nl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD  172 (218)
T cd03290          94 TVEENITFGSPF-NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD  172 (218)
T ss_pred             cHHHHHhhcCcC-CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccC
Confidence            999999886322 222223333332211                                        035577999999


Q ss_pred             HHHHHHHHH--HHHHhc-CCcEEEEEecCchhhhcCCeEEEEeCCe
Q psy10472        126 NESEKLVQA--ALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQ  168 (181)
Q Consensus       126 ~~~~~~i~~--~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~G~  168 (181)
                      +.+++.+++  +++.+. ++.|+|++||+++.+..||++++|++|.
T Consensus       173 ~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~  218 (218)
T cd03290         173 IHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS  218 (218)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence            999999988  566554 4899999999999887799999999873

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=9.6e-35  Score=232.33  Aligned_cols=163  Identities=29%  Similarity=0.407  Sum_probs=131.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hhccCcEEEEccCCC--Cc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WLRGNVIGLINQEPV--LF   83 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~--l~   83 (181)
                      +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..   .+++ .++|+||++.  ++
T Consensus        25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~-~i~~v~q~~~~~~~  103 (268)
T PRK10419         25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRR-DIQMVFQDSISAVN  103 (268)
T ss_pred             eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHh-cEEEEEcChhhccC
Confidence            5699999999999999999999999999999999999999999999999988765432   2344 4999999983  44


Q ss_pred             c-ccHHHHhhcCCC---CCC----HHHHHHHHHHhccc-c-----------------------------ccccCCCCCCC
Q psy10472         84 A-TSVRENIRYGDS---SVS----DEQIEEAAKLANAH-G-----------------------------FISEFPSGALD  125 (181)
Q Consensus        84 ~-~tv~enl~~~~~---~~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD  125 (181)
                      + .|+.+|+.+...   ...    ...+.++++.+++. .                             ++.|+|+++||
T Consensus       104 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD  183 (268)
T PRK10419        104 PRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD  183 (268)
T ss_pred             CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence            4 499999864211   111    12345566655543 1                             35677999999


Q ss_pred             HHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        126 NESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       126 ~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +.+++.+.++++++. + +.|+|++||+++.+.. ||++++|++|++++.
T Consensus       184 ~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~  233 (268)
T PRK10419        184 LVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET  233 (268)
T ss_pred             HHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence            999999999998864 3 8999999999999975 999999999999873

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=1.3e-34  Score=222.44  Aligned_cols=155  Identities=23%  Similarity=0.393  Sum_probs=127.6

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-cc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TS   86 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~t   86 (181)
                      .+.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..+++ .++|++|++.+++ .|
T Consensus        12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~-~i~~~~q~~~~~~~~t   89 (201)
T cd03231          12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIAR-GLLYLGHAPGIKTTLS   89 (201)
T ss_pred             CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhh-heEEeccccccCCCcC
Confidence            356899999999999999999999999999999999999999999999999875432 23443 4999999998875 59


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHH
Q psy10472         87 VRENIRYGDSSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALE  137 (181)
Q Consensus        87 v~enl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~  137 (181)
                      ++||+.+.......++++++++.+++..                             ++.|+|+++||+.+++.+.+.++
T Consensus        90 v~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  169 (201)
T cd03231          90 VLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMA  169 (201)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            9999987643234455666666665533                             35577999999999999999998


Q ss_pred             Hhc-CCcEEEEEecCchhhhc-CCeEEEE
Q psy10472        138 SAC-KGRTVLMIAHRLSTVQN-ADLIVVL  164 (181)
Q Consensus       138 ~~~-~~~tii~vtHd~~~~~~-~d~v~~l  164 (181)
                      ++. +|.|+|++||+...... |++++++
T Consensus       170 ~~~~~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         170 GHCARGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             HHHhCCCEEEEEecCchhhhhccceeEec
Confidence            764 58999999999887754 9999887

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=232.17  Aligned_cols=158  Identities=25%  Similarity=0.433  Sum_probs=126.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC---ccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL---FAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l---~~~   85 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..    ..+++.++|+||++.+   ++.
T Consensus        20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~i~~v~q~~~~~~~~~~   95 (272)
T PRK15056         20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNLVAYVPQSEEVDWSFPV   95 (272)
T ss_pred             cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccceEEEeccccccccCCCc
Confidence            469999999999999999999999999999999999999999999999998642    1222349999999865   234


Q ss_pred             cHHHHhhcCCC-------CC---CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCH
Q psy10472         86 SVRENIRYGDS-------SV---SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDN  126 (181)
Q Consensus        86 tv~enl~~~~~-------~~---~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~  126 (181)
                      ++.+|+.++..       ..   ..+.+.++++.+++..                             ++.|+|+++||+
T Consensus        96 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~  175 (272)
T PRK15056         96 LVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDV  175 (272)
T ss_pred             chhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence            78888865311       01   1223455666655432                             355779999999


Q ss_pred             HHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        127 ESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       127 ~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      .+++.+.++|+++. +|+|||++||+++.+.. ||+++++ +|++++
T Consensus       176 ~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~  221 (272)
T PRK15056        176 KTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA  221 (272)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence            99999999998874 58999999999998865 9999877 899987

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-34  Score=235.37  Aligned_cols=166  Identities=30%  Similarity=0.471  Sum_probs=132.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-----CCcceEEECCEECCCCC--hhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-----VSSGNITISGVDLKHLD--GTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-----p~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++....  ...+++ .++|+||++.
T Consensus        58 ~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~-~i~~v~q~~~  136 (305)
T PRK14264         58 DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRK-RVGMVFQSPN  136 (305)
T ss_pred             eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhh-ceEEEccCCc
Confidence            469999999999999999999999999999999999986     68999999999875422  233444 4999999999


Q ss_pred             CccccHHHHhhcCCCC--------------C--C---HHHHHHHHHHhccc-----------------------------
Q psy10472         82 LFATSVRENIRYGDSS--------------V--S---DEQIEEAAKLANAH-----------------------------  113 (181)
Q Consensus        82 l~~~tv~enl~~~~~~--------------~--~---~~~~~~~~~~~~~~-----------------------------  113 (181)
                      +|+.|++||+.++...              .  .   .+.+.++++.+++.                             
T Consensus       137 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~  216 (305)
T PRK14264        137 PFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLA  216 (305)
T ss_pred             cccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHh
Confidence            8888999999875210              0  0   12344455544331                             


Q ss_pred             ----cccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeE-EEEeCCeEEeecCCc
Q psy10472        114 ----GFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLI-VVLQAGQIVEMLGQH  176 (181)
Q Consensus       114 ----~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v-~~l~~G~i~~~~~~~  176 (181)
                          -++.|+|+++||+.++..+.++|+++.++.|+|++||+++.+.. ||++ ++|++|++++ .++.
T Consensus       217 ~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~-~g~~  284 (305)
T PRK14264        217 VDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVE-YDDT  284 (305)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEE-eCCH
Confidence                13567799999999999999999987667899999999999865 9997 5779999987 3443

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=1.9e-34  Score=214.91  Aligned_cols=147  Identities=29%  Similarity=0.436  Sum_probs=119.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..+.+++.++|+||          
T Consensus        13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q----------   82 (163)
T cd03216          13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ----------   82 (163)
T ss_pred             eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe----------
Confidence            4699999999999999999999999999999999999999999999999998766543333345999999          


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEe
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQ  165 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~  165 (181)
                        +    +....+++.-+...+ +..-++.|+|+++||+.+++.+.+.++++. ++.|+|++|||++.+.. ||++++|+
T Consensus        83 --L----S~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~  156 (163)
T cd03216          83 --L----SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLR  156 (163)
T ss_pred             --c----CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence              1    111123332222222 334567899999999999999999998874 58999999999998865 99999999


Q ss_pred             CCeEEe
Q psy10472        166 AGQIVE  171 (181)
Q Consensus       166 ~G~i~~  171 (181)
                      +|++++
T Consensus       157 ~g~i~~  162 (163)
T cd03216         157 DGRVVG  162 (163)
T ss_pred             CCEEEe
Confidence            999875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=2.8e-34  Score=227.92  Aligned_cols=161  Identities=26%  Similarity=0.411  Sum_probs=129.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC----CcceEEECCEECCCCChhhhccCcEEEEccCCC-Cc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV----SSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-LF   83 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p----~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~   83 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|    ++|+|.++|+++...   ..+++.++|+||++. .|
T Consensus        16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~---~~~~~~i~~v~q~~~~~~   92 (254)
T PRK10418         16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC---ALRGRKIATIMQNPRSAF   92 (254)
T ss_pred             cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc---ccccceEEEEecCCcccc
Confidence            4689999999999999999999999999999999999999    999999999987532   223335999999984 34


Q ss_pred             -c-ccHHHHhhcC----CCCCCHHHHHHHHHHhcccc--------------------------------ccccCCCCCCC
Q psy10472         84 -A-TSVRENIRYG----DSSVSDEQIEEAAKLANAHG--------------------------------FISEFPSGALD  125 (181)
Q Consensus        84 -~-~tv~enl~~~----~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~P~~~LD  125 (181)
                       + .|+.+|+.+.    ......+++.++++.+++..                                ++.|+|+++||
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD  172 (254)
T PRK10418         93 NPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD  172 (254)
T ss_pred             CccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence             4 3888887542    11122345566666666532                                34567999999


Q ss_pred             HHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        126 NESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       126 ~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +.+++.+.+.|+.+. + |.|||++||+++.+.. ||++++|++|++++.
T Consensus       173 ~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~  222 (254)
T PRK10418        173 VVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQ  222 (254)
T ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999998864 3 8999999999999865 999999999999873

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=2.3e-34  Score=221.43  Aligned_cols=144  Identities=31%  Similarity=0.524  Sum_probs=118.4

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE   89 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e   89 (181)
                      ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|              .++|+||++.+|+.|++|
T Consensus        19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--------------~i~~~~q~~~l~~~t~~e   84 (204)
T cd03250          19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--------------SIAYVSQEPWIQNGTIRE   84 (204)
T ss_pred             ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------EEEEEecCchhccCcHHH
Confidence            699999999999999999999999999999999999999999999998              299999999999889999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHhccc----------------------------------------cccccCCCCCCCHHHH
Q psy10472         90 NIRYGDSSVSDEQIEEAAKLANAH----------------------------------------GFISEFPSGALDNESE  129 (181)
Q Consensus        90 nl~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~P~~~LD~~~~  129 (181)
                      |+.++... ..+...++++.+++.                                        -++.|+|+++||+.++
T Consensus        85 nl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~  163 (204)
T cd03250          85 NILFGKPF-DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG  163 (204)
T ss_pred             HhccCCCc-CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence            99986432 222223332222110                                        1355679999999999


Q ss_pred             HHHHH-HHHHh-cCCcEEEEEecCchhhhcCCeEEEEeCCe
Q psy10472        130 KLVQA-ALESA-CKGRTVLMIAHRLSTVQNADLIVVLQAGQ  168 (181)
Q Consensus       130 ~~i~~-~l~~~-~~~~tii~vtHd~~~~~~~d~v~~l~~G~  168 (181)
                      +.+.+ +++.. .++.|||++||+++.+..||++++|++|+
T Consensus       164 ~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~  204 (204)
T cd03250         164 RHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR  204 (204)
T ss_pred             HHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence            99988 45655 34799999999999887799999999985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=1e-34  Score=252.82  Aligned_cols=159  Identities=24%  Similarity=0.289  Sum_probs=136.1

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE   89 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e   89 (181)
                      ++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+. ++|++|++.+|++|+++
T Consensus       356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~-i~~v~q~~~lf~~ti~~  434 (555)
T TIGR01194       356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL-FSAIFADFHLFDDLIGP  434 (555)
T ss_pred             ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhh-CcEEccChhhhhhhhhc
Confidence            58999999999999999999999999999999999999999999999999998887777765 99999999999999999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHhcccc-----------------------------------ccccCCCCCCCHHHHHHHHH
Q psy10472         90 NIRYGDSSVSDEQIEEAAKLANAHG-----------------------------------FISEFPSGALDNESEKLVQA  134 (181)
Q Consensus        90 nl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~P~~~LD~~~~~~i~~  134 (181)
                      |..   +...+++++++++.+++.+                                   ++.|+||++||+++++.+.+
T Consensus       435 n~~---~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~  511 (555)
T TIGR01194       435 DEG---EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYE  511 (555)
T ss_pred             ccc---cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence            952   2234555666666655433                                   34567999999999999988


Q ss_pred             HH-HHh-cCCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        135 AL-ESA-CKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       135 ~l-~~~-~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      .+ +.. .+++|+|+|||+++.+..||+|++|++|++++.
T Consensus       512 ~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~  551 (555)
T TIGR01194       512 ELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD  551 (555)
T ss_pred             HHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence            65 334 458999999999998888999999999999873

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-34  Score=249.45  Aligned_cols=164  Identities=18%  Similarity=0.297  Sum_probs=132.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-CCcceEEECCEECCCCChhhhccCcEEEEccCC---CCcc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-VSSGNITISGVDLKHLDGTWLRGNVIGLINQEP---VLFA   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~---~l~~   84 (181)
                      +++|+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...+.....++.++|+||++   .+++
T Consensus       275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~  354 (506)
T PRK13549        275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVP  354 (506)
T ss_pred             cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcC
Confidence            468999999999999999999999999999999999998 599999999998864433222223499999996   3665


Q ss_pred             -ccHHHHhhcCCC----C---CC----HHHHHHHHHHhccc-c-----------------------------ccccCCCC
Q psy10472         85 -TSVRENIRYGDS----S---VS----DEQIEEAAKLANAH-G-----------------------------FISEFPSG  122 (181)
Q Consensus        85 -~tv~enl~~~~~----~---~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~  122 (181)
                       .|+.||+.++..    .   ..    .+++.++++.+++. .                             ++.|+||+
T Consensus       355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~  434 (506)
T PRK13549        355 VMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTR  434 (506)
T ss_pred             CCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence             499999986421    0   11    12355667776653 2                             35577999


Q ss_pred             CCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        123 ALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       123 ~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +||+.+++.++++++.+. +|+|||++|||++++.. ||++++|++|+++..
T Consensus       435 ~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~  486 (506)
T PRK13549        435 GIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGD  486 (506)
T ss_pred             CcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            999999999999998864 58999999999999866 999999999999863

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=1.8e-34  Score=228.65  Aligned_cols=164  Identities=23%  Similarity=0.296  Sum_probs=128.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE-----CCCCChhhh---ccCcEEEEccCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD-----LKHLDGTWL---RGNVIGLINQEP   80 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~-----i~~~~~~~~---r~~~i~~v~q~~   80 (181)
                      +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|++     +...+....   +++.++|++|++
T Consensus        16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~   95 (253)
T TIGR02323        16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNP   95 (253)
T ss_pred             ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCc
Confidence            468999999999999999999999999999999999999999999999976     554443321   223599999997


Q ss_pred             C--Ccc-ccHHHHhhcC-----CCC--CCHHHHHHHHHHhccc-c-----------------------------ccccCC
Q psy10472         81 V--LFA-TSVRENIRYG-----DSS--VSDEQIEEAAKLANAH-G-----------------------------FISEFP  120 (181)
Q Consensus        81 ~--l~~-~tv~enl~~~-----~~~--~~~~~~~~~~~~~~~~-~-----------------------------~~~~~P  120 (181)
                      .  ++. .|+.+|+.+.     ...  ...+.+.++++.+++. .                             ++.|+|
T Consensus        96 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP  175 (253)
T TIGR02323        96 RDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP  175 (253)
T ss_pred             ccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            4  333 3788887531     111  1123445555555542 1                             356779


Q ss_pred             CCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        121 SGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       121 ~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +++||+.+++.+.+++++.. + +.|+|+|||+++.+.. ||++++|++|++++.
T Consensus       176 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~  230 (253)
T TIGR02323       176 TGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES  230 (253)
T ss_pred             CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence            99999999999999998753 3 8999999999999975 999999999999873

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>KOG0056|consensus

Probab=100.00  E-value=1.6e-35  Score=246.59  Aligned_cols=171  Identities=46%  Similarity=0.735  Sum_probs=153.4

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcccc
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATS   86 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~t   86 (181)
                      +.+++|+||||++.+|+.+||+||||+||||++|+|.+++..++|.|.|||++++......+|+. ||.||||..+|+.|
T Consensus       549 p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~-IGVVPQDtvLFNdT  627 (790)
T KOG0056|consen  549 PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSS-IGVVPQDTVLFNDT  627 (790)
T ss_pred             CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHh-cCcccCcceeecce
Confidence            34789999999999999999999999999999999999999999999999999998888888876 99999999999999


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCH
Q psy10472         87 VRENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDN  126 (181)
Q Consensus        87 v~enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~  126 (181)
                      +..||.|+....+.+++.++++.++..+                                        .+.|+.|++||.
T Consensus       628 I~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT  707 (790)
T KOG0056|consen  628 ILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDT  707 (790)
T ss_pred             eeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCC
Confidence            9999999987777888777776554433                                        134557889999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        127 ESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       127 ~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      .+++.+...+.+++.++|.|+|.|.++.+-.||.|+++++|+|+| .|.++++
T Consensus       708 ~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvE-rG~HeeL  759 (790)
T KOG0056|consen  708 NTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVE-RGRHEEL  759 (790)
T ss_pred             ccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEee-cCcHHHH
Confidence            999999999999999999999999999999999999999999999 6777654

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=1.2e-34  Score=246.23  Aligned_cols=167  Identities=31%  Similarity=0.426  Sum_probs=134.3

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---hhhccCcEEEEccCCC--C
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWLRGNVIGLINQEPV--L   82 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r~~~i~~v~q~~~--l   82 (181)
                      ...+++||||++.+||+++|+|+||||||||.|+|+|+.+|++|+|.++|.+ ..++.   ...|+ .+-++||+|.  |
T Consensus       303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~~~~~~~~~r~-~~QmvFQdp~~SL  380 (539)
T COG1123         303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDLTGGELRRLRR-RIQMVFQDPYSSL  380 (539)
T ss_pred             ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-cccccchhhhhhh-heEEEEeCccccc
Confidence            4568999999999999999999999999999999999999999999999987 33332   23344 4899999984  4


Q ss_pred             ccc-cHHHHhhcCCC---CC----CHHHHHHHHHHhcccc------------------------------ccccCCCCCC
Q psy10472         83 FAT-SVRENIRYGDS---SV----SDEQIEEAAKLANAHG------------------------------FISEFPSGAL  124 (181)
Q Consensus        83 ~~~-tv~enl~~~~~---~~----~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~L  124 (181)
                      -|. ||.+++..+..   ..    .++++.+.++.+++..                              ++.|+|+++|
T Consensus       381 nPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaL  460 (539)
T COG1123         381 NPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSAL  460 (539)
T ss_pred             CccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCcccc
Confidence            454 99999876421   11    1233555566555432                              3567799999


Q ss_pred             CHHHHHHHHHHHHHhcC--CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        125 DNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       125 D~~~~~~i~~~l~~~~~--~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      |+..+..+.++|+++++  |.|.|+||||+..+.. ||||++|++|+|++. ++.+
T Consensus       461 Dvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~-G~~~  515 (539)
T COG1123         461 DVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE-GPTE  515 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe-CCHH
Confidence            99999999999998753  8999999999999987 999999999999994 5433

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=3.1e-34  Score=247.21  Aligned_cols=163  Identities=19%  Similarity=0.314  Sum_probs=132.8

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC---CCcc-c
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP---VLFA-T   85 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~---~l~~-~   85 (181)
                      .+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.....++.+||+||++   .+++ .
T Consensus       266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~  345 (501)
T PRK10762        266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM  345 (501)
T ss_pred             CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC
Confidence            46999999999999999999999999999999999999999999999999876543322223499999996   4565 5


Q ss_pred             cHHHHhhcCCC----C----CC----HHHHHHHHHHhccc-c-----------------------------ccccCCCCC
Q psy10472         86 SVRENIRYGDS----S----VS----DEQIEEAAKLANAH-G-----------------------------FISEFPSGA  123 (181)
Q Consensus        86 tv~enl~~~~~----~----~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~  123 (181)
                      |+.+|+.++..    .    ..    .+++.++++.+++. .                             ++.|+||++
T Consensus       346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~  425 (501)
T PRK10762        346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG  425 (501)
T ss_pred             cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence            99999986421    0    11    22355667776663 2                             355779999


Q ss_pred             CCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        124 LDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ||+.+++.+.++|+++. +|.|||++|||++++.. ||++++|++|+++..
T Consensus       426 LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  476 (501)
T PRK10762        426 VDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGE  476 (501)
T ss_pred             CCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence            99999999999998874 58999999999999866 999999999999863

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-34  Score=247.60  Aligned_cols=163  Identities=20%  Similarity=0.294  Sum_probs=133.0

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC---Ccc-c
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV---LFA-T   85 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~---l~~-~   85 (181)
                      .+++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.....++.++|+||++.   +|+ .
T Consensus       267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~  346 (501)
T PRK11288        267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH  346 (501)
T ss_pred             CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence            489999999999999999999999999999999999999999999999988644333332335999999973   665 5


Q ss_pred             cHHHHhhcCCCC---------CC---HHHHHHHHHHhccc-c-----------------------------ccccCCCCC
Q psy10472         86 SVRENIRYGDSS---------VS---DEQIEEAAKLANAH-G-----------------------------FISEFPSGA  123 (181)
Q Consensus        86 tv~enl~~~~~~---------~~---~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~  123 (181)
                      |+.||+.++...         ..   .+.+.++++.+++. .                             ++.|+||++
T Consensus       347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~  426 (501)
T PRK11288        347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG  426 (501)
T ss_pred             CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence            999999874210         01   12355677777662 2                             355779999


Q ss_pred             CCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        124 LDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ||+.+++.++++|.++. +|.|||+||||++++.. ||++++|++|+++..
T Consensus       427 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~  477 (501)
T PRK11288        427 IDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE  477 (501)
T ss_pred             CCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEE
Confidence            99999999999998864 58999999999999965 999999999999874

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.9e-35  Score=218.86  Aligned_cols=171  Identities=26%  Similarity=0.470  Sum_probs=146.0

Q ss_pred             ccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc
Q psy10472          5 LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA   84 (181)
Q Consensus         5 ~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~   84 (181)
                      ..+.+.+++++|++|++|.+++++|||||||||||.++++|+++++|+|+++|.++...+...+.++ ++.+-|+..+-.
T Consensus        10 ~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~-lSILkQ~N~i~~   88 (252)
T COG4604          10 SYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKK-LSILKQENHINS   88 (252)
T ss_pred             hhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHH-HHHHHhhchhhh
Confidence            3455779999999999999999999999999999999999999999999999999999888887765 899999887765


Q ss_pred             c-cHHHHhhcCCCCC--------CHHHHHHHHHHhccccc-----------------------------cccCCCCCCCH
Q psy10472         85 T-SVRENIRYGDSSV--------SDEQIEEAAKLANAHGF-----------------------------ISEFPSGALDN  126 (181)
Q Consensus        85 ~-tv~enl~~~~~~~--------~~~~~~~~~~~~~~~~~-----------------------------~~~~P~~~LD~  126 (181)
                      . ||+|-+.||+..+        ++..+.++++.+++.++                             +.++|.++||.
T Consensus        89 rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDm  168 (252)
T COG4604          89 RLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDM  168 (252)
T ss_pred             eeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccch
Confidence            4 9999999985322        24456778877765542                             44679999999


Q ss_pred             HHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        127 ESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       127 ~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      .....+++.++++. + |+||++|-||.+++.. +|+|+-|++|+++. .++++
T Consensus       169 kHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~-~G~~~  221 (252)
T COG4604         169 KHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVK-QGSPD  221 (252)
T ss_pred             HHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEe-cCCHH
Confidence            99999999999875 3 9999999999999965 99999999999998 45544

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.6e-34  Score=222.36  Aligned_cols=154  Identities=20%  Similarity=0.323  Sum_probs=126.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..+++ .++|++|++.+++. |+
T Consensus        14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~-~~~~~~~~~~~~~~~tv   91 (204)
T PRK13538         14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQ-DLLYLGHQPGIKTELTA   91 (204)
T ss_pred             EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhh-heEEeCCccccCcCCcH
Confidence            46899999999999999999999999999999999999999999999999886543 23343 49999999988874 99


Q ss_pred             HHHhhcCCCC---CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472         88 RENIRYGDSS---VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAA  135 (181)
Q Consensus        88 ~enl~~~~~~---~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~  135 (181)
                      .||+.++...   ...++++++++.+++..                             ++.|+|+++||+.+++.+.++
T Consensus        92 ~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  171 (204)
T PRK13538         92 LENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL  171 (204)
T ss_pred             HHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence            9999875321   22345566666665532                             355779999999999999999


Q ss_pred             HHHhc-CCcEEEEEecCchhhhc-CCeEEEE
Q psy10472        136 LESAC-KGRTVLMIAHRLSTVQN-ADLIVVL  164 (181)
Q Consensus       136 l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l  164 (181)
                      |+++. ++.|+|++||+++++.. .+|++++
T Consensus       172 l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        172 LAQHAEQGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             HHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence            98864 58899999999999966 5677766

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=7.8e-34  Score=218.38  Aligned_cols=163  Identities=23%  Similarity=0.337  Sum_probs=126.6

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC---CCcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF   83 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~---p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~   83 (181)
                      +.+.+|+++||+|++||+++|+||||||||||+++|+|+++   |++|+|.++|+++.... ...++ .++|+||++.+|
T Consensus        18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~~-~i~~~~q~~~~~   95 (202)
T cd03233          18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYPG-EIIYVSEEDVHF   95 (202)
T ss_pred             CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhcc-eEEEEecccccC
Confidence            34679999999999999999999999999999999999999   89999999999886543 23333 599999999888


Q ss_pred             cc-cHHHHhhcCCCC--------CC---HHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEE
Q psy10472         84 AT-SVRENIRYGDSS--------VS---DEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-K-GRTVLMI  148 (181)
Q Consensus        84 ~~-tv~enl~~~~~~--------~~---~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~v  148 (181)
                      +. ||+||+.++...        .+   .+++.-+...+ ...-++.|+|+++||+.+++.++++++++. + +.|+|++
T Consensus        96 ~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~  175 (202)
T cd03233          96 PTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVS  175 (202)
T ss_pred             CCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            75 999999875210        11   11222222222 233467899999999999999999999864 3 5666665


Q ss_pred             -ecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        149 -AHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       149 -tHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                       +|+.+.+.. ||++++|++|++++
T Consensus       176 ~~h~~~~~~~~~d~i~~l~~G~i~~  200 (202)
T cd03233         176 LYQASDEIYDLFDKVLVLYEGRQIY  200 (202)
T ss_pred             EcCCHHHHHHhCCeEEEEECCEEEe
Confidence             455677654 99999999999876

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=2e-34  Score=271.45  Aligned_cols=158  Identities=39%  Similarity=0.667  Sum_probs=135.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE-CCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI-SGVDLKHLDGTWLRGNVIGLINQEPVLFATSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i-~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv   87 (181)
                      .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++ +|.++..++..++|++ ||||+|++.+|+.|+
T Consensus       398 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~-Ig~V~Q~~~LF~~TI  476 (1466)
T PTZ00265        398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK-IGVVSQDPLLFSNSI  476 (1466)
T ss_pred             CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh-ccEecccccchhccH
Confidence            46999999999999999999999999999999999999999999999 5688887777777765 999999999999999


Q ss_pred             HHHhhcCCC---------------------------------------------------------CCCHHHHHHHHHHh
Q psy10472         88 RENIRYGDS---------------------------------------------------------SVSDEQIEEAAKLA  110 (181)
Q Consensus        88 ~enl~~~~~---------------------------------------------------------~~~~~~~~~~~~~~  110 (181)
                      +|||.++..                                                         ...++++.++++.+
T Consensus       477 ~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~  556 (1466)
T PTZ00265        477 KNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKV  556 (1466)
T ss_pred             HHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHh
Confidence            999998631                                                         01234566666655


Q ss_pred             cccc----------------------------------------ccccCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEE
Q psy10472        111 NAHG----------------------------------------FISEFPSGALDNESEKLVQAALESAC--KGRTVLMI  148 (181)
Q Consensus       111 ~~~~----------------------------------------~~~~~P~~~LD~~~~~~i~~~l~~~~--~~~tii~v  148 (181)
                      ++.+                                        ++.|+||++||+.+++.+.+.|+++.  +|+|+|+|
T Consensus       557 ~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiI  636 (1466)
T PTZ00265        557 LIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIII  636 (1466)
T ss_pred             CcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence            4432                                        34567999999999999999998874  48999999


Q ss_pred             ecCchhhhcCCeEEEEeCC
Q psy10472        149 AHRLSTVQNADLIVVLQAG  167 (181)
Q Consensus       149 tHd~~~~~~~d~v~~l~~G  167 (181)
                      ||+++.+..||+|++|++|
T Consensus       637 sHrls~i~~aD~Iivl~~g  655 (1466)
T PTZ00265        637 AHRLSTIRYANTIFVLSNR  655 (1466)
T ss_pred             eCCHHHHHhCCEEEEEeCC
Confidence            9999999889999999986

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=1.9e-34  Score=247.85  Aligned_cols=161  Identities=21%  Similarity=0.227  Sum_probs=130.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC--c---
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL--F---   83 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l--~---   83 (181)
                      +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++...+....++ .++|+||++.+  +   
T Consensus        16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~~~~   94 (490)
T PRK10938         16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQK-LVSDEWQRNNTDMLSPG   94 (490)
T ss_pred             eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHH-HhceeccCcchhhcccc
Confidence            46999999999999999999999999999999999999999999999998775544444444 49999998642  1   


Q ss_pred             ----cccHHHHhhcCCCCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHH
Q psy10472         84 ----ATSVRENIRYGDSSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEK  130 (181)
Q Consensus        84 ----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~  130 (181)
                          ..|+.+|+.++.  ...+++.++++.+++..                             ++.|+||++||+.+++
T Consensus        95 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~  172 (490)
T PRK10938         95 EDDTGRTTAEIIQDEV--KDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQ  172 (490)
T ss_pred             hhhccccHHHhcccch--hHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence                348888876531  12334555555555432                             4567899999999999


Q ss_pred             HHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        131 LVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       131 ~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      .+.++|++++ +|+|||++|||++.+.. ||++++|++|+++..
T Consensus       173 ~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~  216 (490)
T PRK10938        173 QLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAET  216 (490)
T ss_pred             HHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEe
Confidence            9999998864 48999999999999866 999999999999873

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=255.36  Aligned_cols=163  Identities=25%  Similarity=0.371  Sum_probs=132.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECC----------CCChh---hhccCcEEE
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK----------HLDGT---WLRGNVIGL   75 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~----------~~~~~---~~r~~~i~~   75 (181)
                      .++|++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.          ..+..   .++++.|||
T Consensus        29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~  108 (623)
T PRK10261         29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAM  108 (623)
T ss_pred             eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEE
Confidence            36999999999999999999999999999999999999999999999997552          11211   233335999


Q ss_pred             EccCC--CCccc-cHHHHhhcCCC---CCC----HHHHHHHHHHhcccc-------------------------------
Q psy10472         76 INQEP--VLFAT-SVRENIRYGDS---SVS----DEQIEEAAKLANAHG-------------------------------  114 (181)
Q Consensus        76 v~q~~--~l~~~-tv~enl~~~~~---~~~----~~~~~~~~~~~~~~~-------------------------------  114 (181)
                      |||++  .+++. ||.||+.++..   ...    .+++.++++.+++..                               
T Consensus       109 v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~  188 (623)
T PRK10261        109 IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPA  188 (623)
T ss_pred             EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCC
Confidence            99998  57764 99999987421   111    234566777777631                               


Q ss_pred             -ccccCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        115 -FISEFPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       115 -~~~~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                       ++.|+||++||+.+++.+.++++++. + |+|||+||||++.+.. ||||++|++|++++
T Consensus       189 lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~  249 (623)
T PRK10261        189 VLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE  249 (623)
T ss_pred             EEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecc
Confidence             35577999999999999999999874 4 8999999999999865 99999999999987

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.4e-34  Score=246.81  Aligned_cols=163  Identities=17%  Similarity=0.305  Sum_probs=132.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-CcceEEECCEECCCCCh-hhhccCcEEEEccCC---CCc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-SSGNITISGVDLKHLDG-TWLRGNVIGLINQEP---VLF   83 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-~~G~i~i~g~~i~~~~~-~~~r~~~i~~v~q~~---~l~   83 (181)
                      +.+|+++||+|++||+++|+||||||||||||+|+|+++| ++|+|.++|+++...+. ...++ .++|+||++   .++
T Consensus       273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~-~i~~v~q~~~~~~l~  351 (500)
T TIGR02633       273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA-GIAMVPEDRKRHGIV  351 (500)
T ss_pred             ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC-CCEEcCcchhhCCcC
Confidence            4689999999999999999999999999999999999995 89999999998864433 23344 599999996   467


Q ss_pred             cc-cHHHHhhcCCC-------CCC----HHHHHHHHHHhcccc------------------------------ccccCCC
Q psy10472         84 AT-SVRENIRYGDS-------SVS----DEQIEEAAKLANAHG------------------------------FISEFPS  121 (181)
Q Consensus        84 ~~-tv~enl~~~~~-------~~~----~~~~~~~~~~~~~~~------------------------------~~~~~P~  121 (181)
                      +. |+++|+.++..       ...    .+++.++++.+++..                              ++.|+||
T Consensus       352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt  431 (500)
T TIGR02633       352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT  431 (500)
T ss_pred             CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence            64 99999987421       011    123556677666531                              3457799


Q ss_pred             CCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++||+.+++.++++++.+. +|.|||+||||++++.. ||++++|++|+++..
T Consensus       432 ~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  484 (500)
T TIGR02633       432 RGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGD  484 (500)
T ss_pred             CCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999998864 58999999999999965 999999999999863

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=2.2e-34  Score=219.21  Aligned_cols=146  Identities=28%  Similarity=0.461  Sum_probs=115.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC--ChhhhccCcEEEEccCC--CCcc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL--DGTWLRGNVIGLINQEP--VLFA   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~--~l~~   84 (181)
                      +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...  ....+++ .++|+||++  .+|+
T Consensus         5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~-~i~~~~q~~~~~~~~   83 (190)
T TIGR01166         5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQ-RVGLVFQDPDDQLFA   83 (190)
T ss_pred             cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHh-hEEEEecChhhcccc
Confidence            5699999999999999999999999999999999999999999999999987421  1123343 499999998  3566


Q ss_pred             ccHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         85 TSVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        85 ~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                      .|++||+.++..  ...    .+++.++++.+++..                             ++.|+|+++||+.++
T Consensus        84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  163 (190)
T TIGR01166        84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR  163 (190)
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            799999987421  111    123455566555433                             355779999999999


Q ss_pred             HHHHHHHHHhc-CCcEEEEEecCchhh
Q psy10472        130 KLVQAALESAC-KGRTVLMIAHRLSTV  155 (181)
Q Consensus       130 ~~i~~~l~~~~-~~~tii~vtHd~~~~  155 (181)
                      +.+.++|+++. +|+|||++||+++++
T Consensus       164 ~~~~~~l~~~~~~~~tili~sH~~~~~  190 (190)
T TIGR01166       164 EQMLAILRRLRAEGMTVVISTHDVDLA  190 (190)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeeccccC
Confidence            99999998864 589999999998753

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=2.9e-34  Score=248.80  Aligned_cols=162  Identities=28%  Similarity=0.426  Sum_probs=131.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCC--CCc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEP--VLF   83 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~--~l~   83 (181)
                      +++|+++||+|++||+++|+||||||||||+|+|+|++ |++|+|+++|+++...+...   +++ .++|+||++  .++
T Consensus       299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~-~i~~v~q~~~~~l~  376 (529)
T PRK15134        299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRH-RIQVVFQDPNSSLN  376 (529)
T ss_pred             ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhh-ceEEEEeCchhhcC
Confidence            46999999999999999999999999999999999998 48999999999886554322   233 499999997  366


Q ss_pred             cc-cHHHHhhcCCC----CCC----HHHHHHHHHHhccc-c-----------------------------ccccCCCCCC
Q psy10472         84 AT-SVRENIRYGDS----SVS----DEQIEEAAKLANAH-G-----------------------------FISEFPSGAL  124 (181)
Q Consensus        84 ~~-tv~enl~~~~~----~~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~L  124 (181)
                      +. ||.||+.++..    ...    .+++.++++.+++. .                             ++.|+||++|
T Consensus       377 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L  456 (529)
T PRK15134        377 PRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSL  456 (529)
T ss_pred             CcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCcccc
Confidence            64 99999987421    011    23455666666653 1                             3557799999


Q ss_pred             CHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        125 DNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       125 D~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      |+.+++.++++|++++ + |+|||+||||++++.. ||++++|++|++++.
T Consensus       457 D~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~  507 (529)
T PRK15134        457 DKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQ  507 (529)
T ss_pred             CHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEE
Confidence            9999999999998864 3 8999999999999865 999999999999873

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=1.3e-33  Score=211.00  Aligned_cols=146  Identities=28%  Similarity=0.403  Sum_probs=119.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.            +.++|++|++.+++.|+.
T Consensus        14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~------------~~i~~~~q~~~~~~~tv~   81 (166)
T cd03223          14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------------EDLLFLPQRPYLPLGTLR   81 (166)
T ss_pred             CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC------------ceEEEECCCCccccccHH
Confidence            46999999999999999999999999999999999999999999999872            249999999988877999


Q ss_pred             HHhhcC-CCCCC---HHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEE
Q psy10472         89 ENIRYG-DSSVS---DEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVV  163 (181)
Q Consensus        89 enl~~~-~~~~~---~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~  163 (181)
                      ||+.++ ....+   .+++.-+...+ +..-++.|+|+++||+.+++.+.++++++  +.|+|++||+++....||++++
T Consensus        82 ~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~  159 (166)
T cd03223          82 EQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLD  159 (166)
T ss_pred             HHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEE
Confidence            999873 22222   22222222222 33456789999999999999999999876  5899999999987767999999


Q ss_pred             EeCCe
Q psy10472        164 LQAGQ  168 (181)
Q Consensus       164 l~~G~  168 (181)
                      |+++.
T Consensus       160 l~~~~  164 (166)
T cd03223         160 LDGEG  164 (166)
T ss_pred             EcCCC
Confidence            98763

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=5.5e-34  Score=247.06  Aligned_cols=164  Identities=30%  Similarity=0.443  Sum_probs=132.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCCChh---hhccCcEEEEccCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHLDGT---WLRGNVIGLINQEP   80 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~   80 (181)
                      +++|+++||+|++||+++|+||||||||||+|+|+|+++|     ++|+|.++|+++...+..   .++++.+||+||++
T Consensus        22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~  101 (529)
T PRK15134         22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP  101 (529)
T ss_pred             eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence            4699999999999999999999999999999999999987     799999999998765432   23334599999998


Q ss_pred             C--Cccc-cHHHHhhcCC---CCCC----HHHHHHHHHHhcccc--------------------------------cccc
Q psy10472         81 V--LFAT-SVRENIRYGD---SSVS----DEQIEEAAKLANAHG--------------------------------FISE  118 (181)
Q Consensus        81 ~--l~~~-tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~--------------------------------~~~~  118 (181)
                      .  +++. |+.+|+.+..   ....    .+++.++++.+++..                                ++.|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllD  181 (529)
T PRK15134        102 MVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIAD  181 (529)
T ss_pred             hhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            5  4554 8999886421   1111    234566777666632                                3557


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        119 FPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       119 ~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +||++||+.+++.++++++++. + |+|||+||||++.+.. ||||++|++|++++.
T Consensus       182 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~  238 (529)
T PRK15134        182 EPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQ  238 (529)
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEe
Confidence            7999999999999999998864 3 8999999999999865 999999999999873

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=6e-34  Score=245.85  Aligned_cols=162  Identities=17%  Similarity=0.311  Sum_probs=131.6

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC---CCccc-c
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP---VLFAT-S   86 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~---~l~~~-t   86 (181)
                      +|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++...+.....++.++|+||++   .+|+. |
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t  357 (510)
T PRK15439        278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP  357 (510)
T ss_pred             CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence            6899999999999999999999999999999999999999999999999876554433333599999985   36664 9


Q ss_pred             HHHHhhcCC----C---CC--CHHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCHH
Q psy10472         87 VRENIRYGD----S---SV--SDEQIEEAAKLANAH-G-----------------------------FISEFPSGALDNE  127 (181)
Q Consensus        87 v~enl~~~~----~---~~--~~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~~  127 (181)
                      +.+|+....    .   ..  ..+.++++++.+++. .                             ++.|+||++||+.
T Consensus       358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~  437 (510)
T PRK15439        358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS  437 (510)
T ss_pred             HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence            999985320    0   01  122345666766664 2                             3557799999999


Q ss_pred             HHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        128 SEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       128 ~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +++.+.++|+++. +|.|||+||||++++.. ||++++|++|+++..
T Consensus       438 ~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~  484 (510)
T PRK15439        438 ARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGA  484 (510)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999998864 58999999999999976 999999999999864

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=6.3e-34  Score=220.64  Aligned_cols=154  Identities=21%  Similarity=0.331  Sum_probs=125.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...   ..+ +.++|++|++.+++. |+
T Consensus        24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~-~~i~~~~q~~~~~~~~t~   99 (214)
T PRK13543         24 EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRS-RFMAYLGHLPGLKADLST   99 (214)
T ss_pred             ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhh-hceEEeecCcccccCCcH
Confidence            4699999999999999999999999999999999999999999999999987542   222 349999999988875 99


Q ss_pred             HHHhhcCCC---CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472         88 RENIRYGDS---SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAA  135 (181)
Q Consensus        88 ~enl~~~~~---~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~  135 (181)
                      .||+.+...   ....+.+.++++.+++..                             ++.|+|+++||+.+++.+.+.
T Consensus       100 ~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~  179 (214)
T PRK13543        100 LENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRM  179 (214)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            999976421   112233455555554432                             356779999999999999999


Q ss_pred             HHHh-cCCcEEEEEecCchhhhc-CCeEEEEeC
Q psy10472        136 LESA-CKGRTVLMIAHRLSTVQN-ADLIVVLQA  166 (181)
Q Consensus       136 l~~~-~~~~tii~vtHd~~~~~~-~d~v~~l~~  166 (181)
                      +++. .++.|+|++|||++.+.. ||++++++.
T Consensus       180 l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        180 ISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             HHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence            9875 458999999999999965 999999864

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-34  Score=214.57  Aligned_cols=172  Identities=26%  Similarity=0.398  Sum_probs=136.5

Q ss_pred             cccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC-------------hhhhccCc
Q psy10472          6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD-------------GTWLRGNV   72 (181)
Q Consensus         6 ~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~-------------~~~~r~~~   72 (181)
                      .+...+|++||++.++|+++.|+|.|||||||+||||+-|..|+.|.|.++|+.+.-..             ...+|.+ 
T Consensus        16 ~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~-   94 (256)
T COG4598          16 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR-   94 (256)
T ss_pred             cccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHH-
Confidence            34567999999999999999999999999999999999999999999999999874211             1234544 


Q ss_pred             EEEEccCCCCccc-cHHHHhhcCCC----CCCHHHH---HHHHHHhcc-----------------------------ccc
Q psy10472         73 IGLINQEPVLFAT-SVRENIRYGDS----SVSDEQI---EEAAKLANA-----------------------------HGF  115 (181)
Q Consensus        73 i~~v~q~~~l~~~-tv~enl~~~~~----~~~~~~~---~~~~~~~~~-----------------------------~~~  115 (181)
                      .|+|||+++|++. ||.||+..+.-    ....+.+   +..+..+++                             .-+
T Consensus        95 L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vm  174 (256)
T COG4598          95 LGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVM  174 (256)
T ss_pred             hhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceE
Confidence            8999999999975 99999976421    1112222   222333332                             224


Q ss_pred             cccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchhh
Q psy10472        116 ISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       116 ~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      +.|+||++|||+..-++++.+++++ +|+|+++|||.+.++.. +.+|++|++|.|.+ .++++++
T Consensus       175 LFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE-~G~P~qv  239 (256)
T COG4598         175 LFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE-EGPPEQV  239 (256)
T ss_pred             eecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc-cCChHHH
Confidence            6678999999999999999999886 59999999999999987 99999999999987 5666543

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=1.3e-33  Score=223.12  Aligned_cols=167  Identities=28%  Similarity=0.366  Sum_probs=127.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC--CCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY--DVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~--~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +++|+++||+|++|++++|+||||||||||+++|+|+.  +|++|+|.++|+++...+....++..++|++|++.+++. 
T Consensus        14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   93 (248)
T PRK09580         14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV   93 (248)
T ss_pred             eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence            56999999999999999999999999999999999995  699999999999887665544443459999999877754 


Q ss_pred             cHHHHhhcC-------CCC--CC----HHHHHHHHHHhccc-------------------------------cccccCCC
Q psy10472         86 SVRENIRYG-------DSS--VS----DEQIEEAAKLANAH-------------------------------GFISEFPS  121 (181)
Q Consensus        86 tv~enl~~~-------~~~--~~----~~~~~~~~~~~~~~-------------------------------~~~~~~P~  121 (181)
                      +..+++.+.       ...  ..    .+.+.++++.+++.                               -++.|+||
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt  173 (248)
T PRK09580         94 SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD  173 (248)
T ss_pred             hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            554443221       000  01    11223333333331                               13567799


Q ss_pred             CCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc--CCeEEEEeCCeEEeecCCc
Q psy10472        122 GALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~--~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++||+.+++.+.+.++++. +++|||++|||++.+..  ||++++|++|++++ .++.
T Consensus       174 ~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~-~g~~  230 (248)
T PRK09580        174 SGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK-SGDF  230 (248)
T ss_pred             ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEE-eCCH
Confidence            9999999999999998875 47999999999999865  89999999999987 3443

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4.9e-34  Score=219.07  Aligned_cols=152  Identities=22%  Similarity=0.324  Sum_probs=123.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ...+++ .++|++|++.+++ .|+
T Consensus        14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~-~~~~~~-~i~~~~q~~~~~~~~tv   91 (200)
T PRK13540         14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD-LCTYQK-QLCFVGHRSGINPYLTL   91 (200)
T ss_pred             eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC-HHHHHh-heEEeccccccCcCCCH
Confidence            5699999999999999999999999999999999999999999999999987542 233444 4999999998876 599


Q ss_pred             HHHhhcCCC-CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHH
Q psy10472         88 RENIRYGDS-SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALE  137 (181)
Q Consensus        88 ~enl~~~~~-~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~  137 (181)
                      .+|+.++.. ......+.++++.+++..                             ++.|+|+++||+.+++.+.+.|+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~  171 (200)
T PRK13540         92 RENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQ  171 (200)
T ss_pred             HHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHH
Confidence            999987531 112234555555544322                             35677999999999999999998


Q ss_pred             Hhc-CCcEEEEEecCchhhhcCCeEE
Q psy10472        138 SAC-KGRTVLMIAHRLSTVQNADLIV  162 (181)
Q Consensus       138 ~~~-~~~tii~vtHd~~~~~~~d~v~  162 (181)
                      ++. ++.|+|++||+.+.+..||.-.
T Consensus       172 ~~~~~~~tiii~sh~~~~~~~~d~~~  197 (200)
T PRK13540        172 EHRAKGGAVLLTSHQDLPLNKADYEE  197 (200)
T ss_pred             HHHHcCCEEEEEeCCchhccccchhh
Confidence            864 5899999999999998888654

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=5.1e-34  Score=222.29  Aligned_cols=156  Identities=26%  Similarity=0.334  Sum_probs=122.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEEC--CE--ECCCCChhh---hccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS--GV--DLKHLDGTW---LRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~--g~--~i~~~~~~~---~r~~~i~~v~q~~~   81 (181)
                      .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++  |.  ++...+...   .+++.++|+||++.
T Consensus        21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~  100 (224)
T TIGR02324        21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR  100 (224)
T ss_pred             eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence            369999999999999999999999999999999999999999999998  43  444443322   23345999999998


Q ss_pred             Cccc-cHHHHhhcCC--CCCC----HHHHHHHHHHhcccc------------------------------ccccCCCCCC
Q psy10472         82 LFAT-SVRENIRYGD--SSVS----DEQIEEAAKLANAHG------------------------------FISEFPSGAL  124 (181)
Q Consensus        82 l~~~-tv~enl~~~~--~~~~----~~~~~~~~~~~~~~~------------------------------~~~~~P~~~L  124 (181)
                      +++. |+.||+.+..  ....    .+++.++++.+++..                              ++.|+|+++|
T Consensus       101 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L  180 (224)
T TIGR02324       101 VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASL  180 (224)
T ss_pred             cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence            8875 9999997631  1111    233455566555432                              3456799999


Q ss_pred             CHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEE
Q psy10472        125 DNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVL  164 (181)
Q Consensus       125 D~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l  164 (181)
                      |+.+++.+.+.++++. +|+|+|++||+++.+.. ||+++.+
T Consensus       181 D~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~  222 (224)
T TIGR02324       181 DAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV  222 (224)
T ss_pred             CHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence            9999999999998864 48999999999998864 9999876

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>KOG0054|consensus

Probab=100.00  E-value=5.2e-34  Score=262.33  Aligned_cols=173  Identities=35%  Similarity=0.531  Sum_probs=155.0

Q ss_pred             CCccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC
Q psy10472          3 GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL   82 (181)
Q Consensus         3 ~~~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l   82 (181)
                      ++......||++|||+|++||.+||+|+.|||||||+.+|.++.+|.+|+|.|||.|+.++...++|++ ++.+||+|.+
T Consensus      1147 RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsr-lsIIPQdPvL 1225 (1381)
T KOG0054|consen 1147 RYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSR-LSIIPQDPVL 1225 (1381)
T ss_pred             EeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhc-CeeeCCCCce
Confidence            344455679999999999999999999999999999999999999999999999999999999999987 9999999999


Q ss_pred             ccccHHHHhhcCCCCCCHHHHHHHHHHhccccc----------------------------------------cccCCCC
Q psy10472         83 FATSVRENIRYGDSSVSDEQIEEAAKLANAHGF----------------------------------------ISEFPSG  122 (181)
Q Consensus        83 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~P~~  122 (181)
                      |++|+|.|+.-. ...++++++++++.+++.+.                                        +.|+.|+
T Consensus      1226 FsGTvR~NLDPf-~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATA 1304 (1381)
T KOG0054|consen 1226 FSGTVRFNLDPF-DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATA 1304 (1381)
T ss_pred             ecCccccccCcc-cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccc
Confidence            999999999755 34678889999988776553                                        3455888


Q ss_pred             CCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472        123 ALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       123 ~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      ++|+++-..+.+.|++..+++|||.|.|+++.+-.||||+||++|+++| .+.|..
T Consensus      1305 sVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~E-fdsP~~ 1359 (1381)
T KOG0054|consen 1305 SVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVE-FDSPAE 1359 (1381)
T ss_pred             cCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEee-cCChHH
Confidence            9999999999999999888999999999999999999999999999999 455543

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.2e-34  Score=213.19  Aligned_cols=160  Identities=29%  Similarity=0.475  Sum_probs=130.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      ..+|+|+|++|.+||+++++|||||||||||++++|+.+|+.|+|.+||..+..-. .    . -|+|||++.++|. |+
T Consensus        18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-a----e-rgvVFQ~~~LlPWl~~   91 (259)
T COG4525          18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-A----E-RGVVFQNEALLPWLNV   91 (259)
T ss_pred             hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-c----c-ceeEeccCccchhhHH
Confidence            45999999999999999999999999999999999999999999999999886532 1    1 3899999999997 99


Q ss_pred             HHHhhcCCCC--CCH-H---HHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDSS--VSD-E---QIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~~--~~~-~---~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      .||++|+...  ..+ +   ...+.+..+++.+                             ++.|+|+++||.-+++.+
T Consensus        92 ~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~m  171 (259)
T COG4525          92 IDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM  171 (259)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHH
Confidence            9999998432  122 2   2233444444433                             356779999999999999


Q ss_pred             HHHHHH-hc-CCcEEEEEecCchhhhc-CCeEEEEe--CCeEEeecC
Q psy10472        133 QAALES-AC-KGRTVLMIAHRLSTVQN-ADLIVVLQ--AGQIVEMLG  174 (181)
Q Consensus       133 ~~~l~~-~~-~~~tii~vtHd~~~~~~-~d~v~~l~--~G~i~~~~~  174 (181)
                      .+++-+ ++ .|+.+++||||.+++-. ++++++|+  .|++++...
T Consensus       172 QelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~  218 (259)
T COG4525         172 QELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLP  218 (259)
T ss_pred             HHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecC
Confidence            999866 44 49999999999999866 99999997  578887543

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=1.3e-33  Score=220.26  Aligned_cols=148  Identities=20%  Similarity=0.345  Sum_probs=120.2

Q ss_pred             EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc---cccHHHHhhc
Q psy10472         17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF---ATSVRENIRY   93 (181)
Q Consensus        17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~---~~tv~enl~~   93 (181)
                      |+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.     ..++ .++|+||++.++   +.|+.+|+.+
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~-~i~~v~q~~~~~~~~~~tv~~~l~~   74 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWR-HIGYVPQRHEFAWDFPISVAHTVMS   74 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhC-cEEEecccccccCCCCccHHHHHHh
Confidence            578999999999999999999999999999999999999998753     2233 499999998663   3589999976


Q ss_pred             CCC-------CC---CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHH
Q psy10472         94 GDS-------SV---SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQA  134 (181)
Q Consensus        94 ~~~-------~~---~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~  134 (181)
                      +..       ..   ..+++.++++.+++..                             ++.|+|+++||+.+++.+.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~  154 (223)
T TIGR03771        75 GRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE  154 (223)
T ss_pred             ccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            521       01   1234556666665543                             35567999999999999999


Q ss_pred             HHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        135 ALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       135 ~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      .++++. ++.|+|++||+++.+.. ||+++++ +|+++.
T Consensus       155 ~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~  192 (223)
T TIGR03771       155 LFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIA  192 (223)
T ss_pred             HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence            998865 58999999999998865 9999999 899987

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=3.4e-33  Score=224.69  Aligned_cols=151  Identities=26%  Similarity=0.426  Sum_probs=121.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|              .++|++|++.+++.|++
T Consensus        50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--------------~i~yv~q~~~l~~~tv~  115 (282)
T cd03291          50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--------------RISFSSQFSWIMPGTIK  115 (282)
T ss_pred             ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--------------EEEEEeCcccccccCHH
Confidence            4699999999999999999999999999999999999999999999987              18999999998888999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcc----------------------------------------ccccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANA----------------------------------------HGFISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~P~~~LD~~~  128 (181)
                      ||+.++... .......+++.+++                                        .-++.|+|+++||+.+
T Consensus       116 enl~~~~~~-~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~  194 (282)
T cd03291         116 ENIIFGVSY-DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT  194 (282)
T ss_pred             HHhhccccc-CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence            999875321 11111111111110                                        1145677999999999


Q ss_pred             HHHHHHHH-HHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCC
Q psy10472        129 EKLVQAAL-ESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQ  175 (181)
Q Consensus       129 ~~~i~~~l-~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~  175 (181)
                      +..+.+.+ ..+.++.|||++||+++.+..||++++|++|+++. .++
T Consensus       195 ~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~-~g~  241 (282)
T cd03291         195 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF-YGT  241 (282)
T ss_pred             HHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEE-ECC
Confidence            99998754 55556899999999999987799999999999987 344

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=2.2e-33  Score=222.50  Aligned_cols=149  Identities=24%  Similarity=0.356  Sum_probs=122.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc---c
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA---T   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~---~   85 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.           . .++|+||++.+++   .
T Consensus        17 ~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~-----------~-~i~~v~q~~~~~~~l~~   84 (251)
T PRK09544         17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK-----------L-RIGYVPQKLYLDTTLPL   84 (251)
T ss_pred             ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc-----------c-CEEEeccccccccccCh
Confidence            46999999999999999999999999999999999999999999999861           1 3999999987764   3


Q ss_pred             cHHHHhhcCCCCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472         86 SVRENIRYGDSSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAAL  136 (181)
Q Consensus        86 tv~enl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l  136 (181)
                      |+.+|+.+.. ....+++.++++.+++..                             ++.|+|+++||+.++..+++.|
T Consensus        85 ~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L  163 (251)
T PRK09544         85 TVNRFLRLRP-GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLI  163 (251)
T ss_pred             hHHHHHhccc-cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence            7888876532 123344556666555432                             3567799999999999999999


Q ss_pred             HHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        137 ESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       137 ~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      +++. + +.|+|++||+++++.. ||++++|++ ++++
T Consensus       164 ~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~  200 (251)
T PRK09544        164 DQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC  200 (251)
T ss_pred             HHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe
Confidence            8764 3 8999999999999865 999999965 6766

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=1.5e-33  Score=268.37  Aligned_cols=166  Identities=22%  Similarity=0.375  Sum_probs=138.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....|+ .+||+||++.+++. ||
T Consensus       943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~-~IG~~pQ~~~L~~~LTV 1020 (2272)
T TIGR01257       943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQ-SLGMCPQHNILFHHLTV 1020 (2272)
T ss_pred             ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhh-cEEEEecCCcCCCCCCH
Confidence            569999999999999999999999999999999999999999999999999864 3334454 49999999998875 99


Q ss_pred             HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +||+.++..  ...    +++++++++.+++.+                             ++.|+||++||+.+++.+
T Consensus      1021 ~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l 1100 (2272)
T TIGR01257      1021 AEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI 1100 (2272)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH
Confidence            999987521  111    234566666666543                             356779999999999999


Q ss_pred             HHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        133 QAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       133 ~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      +++|+++++|+|||++||+++++.. |||+++|++|+++. .++..
T Consensus      1101 ~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~-~Gs~~ 1145 (2272)
T TIGR01257      1101 WDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYC-SGTPL 1145 (2272)
T ss_pred             HHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ecCHH
Confidence            9999988779999999999999976 99999999999987 45443

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=1.5e-33  Score=239.66  Aligned_cols=167  Identities=30%  Similarity=0.452  Sum_probs=132.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC----cceEEECCEECCCCChh---hhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS----SGNITISGVDLKHLDGT---WLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~----~G~i~i~g~~i~~~~~~---~~r~~~i~~v~q~~~   81 (181)
                      ..+++||||+|.+||++||+|.|||||||+.++|.|++++.    +|+|.++|+++..++..   .+|.+.|+|+||+|.
T Consensus        22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~  101 (539)
T COG1123          22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM  101 (539)
T ss_pred             eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence            35999999999999999999999999999999999999987    89999999998877754   346667999999983


Q ss_pred             -Cc-c-ccHHHHhhc----CCCCCC---HHHHHHHHHHhccc-------------------------------cccccCC
Q psy10472         82 -LF-A-TSVRENIRY----GDSSVS---DEQIEEAAKLANAH-------------------------------GFISEFP  120 (181)
Q Consensus        82 -l~-~-~tv~enl~~----~~~~~~---~~~~~~~~~~~~~~-------------------------------~~~~~~P  120 (181)
                       .+ | .||.+.|.-    ......   .+++.++++.+++.                               -++.|+|
T Consensus       102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP  181 (539)
T COG1123         102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP  181 (539)
T ss_pred             hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC
Confidence             34 4 377666543    211111   12233344444332                               1467889


Q ss_pred             CCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        121 SGALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       121 ~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      |++||+..+.+++++|+.+.  .|.++|+||||+..+.+ ||||++|++|+++|. ++.
T Consensus       182 TTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~-G~~  239 (539)
T COG1123         182 TTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET-GPT  239 (539)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe-cCH
Confidence            99999999999999999875  49999999999999977 999999999999994 543

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=1.4e-33  Score=213.25  Aligned_cols=159  Identities=30%  Similarity=0.425  Sum_probs=121.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||   ++.. -+
T Consensus        12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~-~i~~~~q---~l~~~gl   87 (180)
T cd03214          12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELAR-KIAYVPQ---ALELLGL   87 (180)
T ss_pred             eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHH-HHhHHHH---HHHHcCC
Confidence            46999999999999999999999999999999999999999999999999987666555554 4999999   2211 12


Q ss_pred             HHHhhcCCCCCC---HHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCe
Q psy10472         88 RENIRYGDSSVS---DEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADL  160 (181)
Q Consensus        88 ~enl~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~  160 (181)
                      .+.+.-.....+   .+++.-+...+ ...-++.|+||++||+.+++.+.+.+.++. + +.|+|++||+++.+.. ||+
T Consensus        88 ~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~  167 (180)
T cd03214          88 AHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADR  167 (180)
T ss_pred             HhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            222111111111   22222222222 334467899999999999999999998864 3 7899999999999855 999


Q ss_pred             EEEEeCCeEEe
Q psy10472        161 IVVLQAGQIVE  171 (181)
Q Consensus       161 v~~l~~G~i~~  171 (181)
                      +++|++|++++
T Consensus       168 ~~~l~~g~i~~  178 (180)
T cd03214         168 VILLKDGRIVA  178 (180)
T ss_pred             EEEEECCEEEe
Confidence            99999999875

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.6e-33  Score=220.84  Aligned_cols=162  Identities=27%  Similarity=0.430  Sum_probs=134.6

Q ss_pred             eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh----hhhccCcEEEEccCCCCccc-cHH
Q psy10472         14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG----TWLRGNVIGLINQEPVLFAT-SVR   88 (181)
Q Consensus        14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~r~~~i~~v~q~~~l~~~-tv~   88 (181)
                      +++|+.+...++||.|+||||||||+|+|+|+.+|++|.|.+||.-+.+...    ..-+ ++||||||+..||+. ||+
T Consensus        16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~-RriGYVFQDARLFpH~tVr   94 (352)
T COG4148          16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK-RRIGYVFQDARLFPHYTVR   94 (352)
T ss_pred             EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhh-heeeeEeeccccccceEEe
Confidence            6788888867999999999999999999999999999999999987754321    1122 349999999999986 999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhccccc-----------------------------cccCCCCCCCHHHHHHHHHHHHHh
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHGF-----------------------------ISEFPSGALDNESEKLVQAALESA  139 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~P~~~LD~~~~~~i~~~l~~~  139 (181)
                      .|+.|+..........++.+++++..+                             +.|+|.++||...+.+++-.++.+
T Consensus        95 gNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL  174 (352)
T COG4148          95 GNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERL  174 (352)
T ss_pred             cchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHH
Confidence            999999766556666777766665443                             456688999999999999999987


Q ss_pred             cC--CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        140 CK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       140 ~~--~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      .+  +..|++|||.++++.. ||+|++|++|++.+ .++-+
T Consensus       175 ~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A-~g~~e  214 (352)
T COG4148         175 RDEINIPILYVSHSLDEVLRLADRVVVLENGKVKA-SGPLE  214 (352)
T ss_pred             HHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEe-cCcHH
Confidence            64  7899999999999876 99999999999987 45433

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=3.5e-33  Score=265.94  Aligned_cols=166  Identities=16%  Similarity=0.277  Sum_probs=136.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .....++ .|||+||++.+++. |+
T Consensus      1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~-~IGy~pQ~~~L~~~LTv 2029 (2272)
T TIGR01257      1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQ-NMGYCPQFDAIDDLLTG 2029 (2272)
T ss_pred             ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhh-hEEEEeccccCCCCCCH
Confidence            469999999999999999999999999999999999999999999999999854 2233444 49999999998875 99


Q ss_pred             HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +||+.+...  ...    ++.++++++.+++..                             ++.|+|+++||+.+++.+
T Consensus      2030 ~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l 2109 (2272)
T TIGR01257      2030 REHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRML 2109 (2272)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence            999976321  111    223445566555433                             356789999999999999


Q ss_pred             HHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        133 QAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       133 ~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      +++|+++. +|+|||++||++++++. |||+++|++|+++. .+..+
T Consensus      2110 ~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~-~Gs~q 2155 (2272)
T TIGR01257      2110 WNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQC-LGTIQ 2155 (2272)
T ss_pred             HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHH
Confidence            99998864 58999999999999976 99999999999987 45443

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=3.1e-33  Score=241.90  Aligned_cols=167  Identities=22%  Similarity=0.388  Sum_probs=131.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEEC-CEE---CCCCCh---hhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS-GVD---LKHLDG---TWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~-g~~---i~~~~~---~~~r~~~i~~v~q~~~   81 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+   +...+.   ...++ .++|+||++.
T Consensus       297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~-~i~~v~q~~~  375 (520)
T TIGR03269       297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKR-YIGILHQEYD  375 (520)
T ss_pred             ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhh-hEEEEccCcc
Confidence            469999999999999999999999999999999999999999999996 643   222221   12333 4999999998


Q ss_pred             Cccc-cHHHHhhcCCC--CC---CHHHHHHHHHHhcccc----------------------------------ccccCCC
Q psy10472         82 LFAT-SVRENIRYGDS--SV---SDEQIEEAAKLANAHG----------------------------------FISEFPS  121 (181)
Q Consensus        82 l~~~-tv~enl~~~~~--~~---~~~~~~~~~~~~~~~~----------------------------------~~~~~P~  121 (181)
                      +++. |+.||+.++..  ..   ..+++.++++.+++..                                  ++.|+||
T Consensus       376 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt  455 (520)
T TIGR03269       376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPT  455 (520)
T ss_pred             cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            8875 99999976311  11   1233455666666631                                  2456799


Q ss_pred             CCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        122 GALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      ++||+.+++.++++|+++. + |.|||+||||++++.. ||++++|++|++++ .++.+
T Consensus       456 ~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~-~g~~~  513 (520)
T TIGR03269       456 GTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK-IGDPE  513 (520)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHH
Confidence            9999999999999998864 3 8999999999999866 99999999999987 34443

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=3.6e-33  Score=213.90  Aligned_cols=152  Identities=22%  Similarity=0.340  Sum_probs=121.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv   87 (181)
                      +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+++ .++|++|++.+++ .|+
T Consensus        13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~-~i~~~~q~~~~~~~~tv   90 (198)
T TIGR01189        13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHR-NILYLGHLPGLKPELSA   90 (198)
T ss_pred             EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhh-heEEeccCcccccCCcH
Confidence            56899999999999999999999999999999999999999999999999876543 23333 4999999988887 599


Q ss_pred             HHHhhcCCC--CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472         88 RENIRYGDS--SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAAL  136 (181)
Q Consensus        88 ~enl~~~~~--~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l  136 (181)
                      .+|+.+...  ....+.+.++++.+++..                             ++.|+|+++||+.+++.+.+++
T Consensus        91 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  170 (198)
T TIGR01189        91 LENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLL  170 (198)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence            999976421  112334566666655433                             3557799999999999999999


Q ss_pred             HHh-cCCcEEEEEecCchhhhcCCeEEE
Q psy10472        137 ESA-CKGRTVLMIAHRLSTVQNADLIVV  163 (181)
Q Consensus       137 ~~~-~~~~tii~vtHd~~~~~~~d~v~~  163 (181)
                      .++ .+|.|+|++||+...+ .|++++.
T Consensus       171 ~~~~~~~~tii~~sH~~~~~-~~~~~~~  197 (198)
T TIGR01189       171 RAHLARGGIVLLTTHQDLGL-VEARELR  197 (198)
T ss_pred             HHHHhCCCEEEEEEcccccc-cceEEee
Confidence            886 4589999999998543 3566654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=2.5e-33  Score=242.47  Aligned_cols=162  Identities=27%  Similarity=0.459  Sum_probs=127.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC--CCCcceEEEC-----------------------CEECC--
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY--DVSSGNITIS-----------------------GVDLK--   61 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~--~p~~G~i~i~-----------------------g~~i~--   61 (181)
                      +++|+++||+|.+||+++|+||||||||||+|+|+|++  +|++|+|.++                       |.++.  
T Consensus        13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~   92 (520)
T TIGR03269        13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE   92 (520)
T ss_pred             eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccccc
Confidence            46999999999999999999999999999999999997  7999999997                       22221  


Q ss_pred             -----CCCh---hhhccCcEEEEccC-CCCccc-cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------
Q psy10472         62 -----HLDG---TWLRGNVIGLINQE-PVLFAT-SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------  114 (181)
Q Consensus        62 -----~~~~---~~~r~~~i~~v~q~-~~l~~~-tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------  114 (181)
                           ..+.   ..+++ .++|+||+ +.+|+. |++||+.++..  ...    .+++.++++.+++..           
T Consensus        93 ~~~~~~~~~~~~~~~~~-~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg  171 (520)
T TIGR03269        93 EVDFWNLSDKLRRRIRK-RIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSG  171 (520)
T ss_pred             chhhhccCHHHHHHhhh-cEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCH
Confidence                 1111   12333 49999997 567764 99999987421  111    234455666665533           


Q ss_pred             ------------------ccccCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        115 ------------------FISEFPSGALDNESEKLVQAALESA-CK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       115 ------------------~~~~~P~~~LD~~~~~~i~~~l~~~-~~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                                        ++.|+||++||+.+++.+.++|+++ ++ |+|||+||||++.+.. ||++++|++|+++.
T Consensus       172 Gq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~  249 (520)
T TIGR03269       172 GEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKE  249 (520)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEee
Confidence                              3567799999999999999999886 33 8999999999999865 99999999999986

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=6.4e-33  Score=213.96  Aligned_cols=153  Identities=18%  Similarity=0.335  Sum_probs=124.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv   87 (181)
                      +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . . .++ .++|++|++.+++ .|+
T Consensus        15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~-~-~~~-~~~~~~~~~~~~~~~tv   90 (207)
T PRK13539         15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-P-D-VAE-ACHYLGHRNAMKPALTV   90 (207)
T ss_pred             eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-h-h-hHh-hcEEecCCCcCCCCCcH
Confidence            458999999999999999999999999999999999999999999999988642 1 1 343 4899999887765 599


Q ss_pred             HHHhhcCCC--CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472         88 RENIRYGDS--SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAAL  136 (181)
Q Consensus        88 ~enl~~~~~--~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l  136 (181)
                      .+|+.+...  ....+.+.++++.+++..                             ++.|+|+++||+.+++.+++.|
T Consensus        91 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l  170 (207)
T PRK13539         91 AENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI  170 (207)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            999976421  122344566666655432                             3557799999999999999999


Q ss_pred             HHh-cCCcEEEEEecCchhhhcCCeEEEEeC
Q psy10472        137 ESA-CKGRTVLMIAHRLSTVQNADLIVVLQA  166 (181)
Q Consensus       137 ~~~-~~~~tii~vtHd~~~~~~~d~v~~l~~  166 (181)
                      +++ .++.|+|++||+++++.. |+++.++.
T Consensus       171 ~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~  200 (207)
T PRK13539        171 RAHLAQGGIVIAATHIPLGLPG-ARELDLGP  200 (207)
T ss_pred             HHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence            875 458999999999999877 99988854

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-32  Score=236.05  Aligned_cols=164  Identities=16%  Similarity=0.306  Sum_probs=128.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC---CCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP---VLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~---~l~~~   85 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...+.....++.++|+||++   .+|+.
T Consensus       261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~  340 (491)
T PRK10982        261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY  340 (491)
T ss_pred             CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence            358999999999999999999999999999999999999999999999999876554333234599999985   35653


Q ss_pred             -cHHHH-----hhcCCC--C-CC----HHHHHHHHHHhccc-c-----------------------------ccccCCCC
Q psy10472         86 -SVREN-----IRYGDS--S-VS----DEQIEEAAKLANAH-G-----------------------------FISEFPSG  122 (181)
Q Consensus        86 -tv~en-----l~~~~~--~-~~----~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~  122 (181)
                       |+.+|     +.+...  . ..    .+.+.++++.+++. .                             ++.|+||+
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~  420 (491)
T PRK10982        341 LDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTR  420 (491)
T ss_pred             CcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence             76665     332111  0 11    12334555555442 1                             35677999


Q ss_pred             CCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        123 ALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       123 ~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +||+.+++.++++++.+. +|.|||++|||++++.. ||++++|++|+++..
T Consensus       421 gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~  472 (491)
T PRK10982        421 GIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI  472 (491)
T ss_pred             ccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE
Confidence            999999999999998864 58999999999999865 999999999999853

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=8.6e-33  Score=215.71  Aligned_cols=151  Identities=27%  Similarity=0.421  Sum_probs=118.2

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc-ccc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF-ATS   86 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~-~~t   86 (181)
                      .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...     .   .     ...++ ..|
T Consensus        34 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~---~-----~~~~~~~~t  100 (224)
T cd03220          34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----G---L-----GGGFNPELT  100 (224)
T ss_pred             CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----c---c-----cccCCCCCc
Confidence            36799999999999999999999999999999999999999999999999875311     0   1     11223 359


Q ss_pred             HHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472         87 VRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL  131 (181)
Q Consensus        87 v~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~  131 (181)
                      +.||+.++..  ...    .+++.++++.+++..                             ++.|+|+++||+.+++.
T Consensus       101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~  180 (224)
T cd03220         101 GRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEK  180 (224)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence            9999876421  111    122344555444322                             35677999999999999


Q ss_pred             HHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        132 VQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       132 i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      +.+.+.++. ++.|||++||+++.+.. ||++++|++|++++
T Consensus       181 ~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  222 (224)
T cd03220         181 CQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF  222 (224)
T ss_pred             HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            999998764 47999999999999865 99999999999876

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=243.24  Aligned_cols=164  Identities=30%  Similarity=0.452  Sum_probs=135.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhh---ccCcEEEEccCCCCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL---RGNVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~---r~~~i~~v~q~~~l~~~   85 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+   +++.++|+||++.+|+.
T Consensus        21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~  100 (648)
T PRK10535         21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH  100 (648)
T ss_pred             eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence            468999999999999999999999999999999999999999999999999887665432   33459999999999975


Q ss_pred             -cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         86 -SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        86 -tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                       |+.||+.+...  ...    .++..++++.+++..                             ++.|+|+++||+.++
T Consensus       101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~  180 (648)
T PRK10535        101 LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG  180 (648)
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence             99999986321  111    223345555554432                             355779999999999


Q ss_pred             HHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        130 KLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      +.+.++++++. ++.|+|++||+++.+..||++++|++|++++.
T Consensus       181 ~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~  224 (648)
T PRK10535        181 EEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRN  224 (648)
T ss_pred             HHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEee
Confidence            99999998865 58999999999998877999999999999874

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=8.9e-33  Score=244.15  Aligned_cols=164  Identities=25%  Similarity=0.363  Sum_probs=133.2

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC--cceEEECCEECCCCChhhhccCcEEEEccCCCCccc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS--SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~--~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~   85 (181)
                      .+++|+|+|+++++||+++|+|||||||||||++|+|+.+|+  +|+|.+||+++..    ..++ .++||+|++.+++.
T Consensus        80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~-~i~yv~Q~~~l~~~  154 (659)
T PLN03211         80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILK-RTGFVTQDDILYPH  154 (659)
T ss_pred             CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhcc-ceEEECcccccCCc
Confidence            467999999999999999999999999999999999999885  8999999998642    2333 49999999999875


Q ss_pred             -cHHHHhhcCC----C-CCCH----HHHHHHHHHhcccc----------------------------------ccccCCC
Q psy10472         86 -SVRENIRYGD----S-SVSD----EQIEEAAKLANAHG----------------------------------FISEFPS  121 (181)
Q Consensus        86 -tv~enl~~~~----~-~~~~----~~~~~~~~~~~~~~----------------------------------~~~~~P~  121 (181)
                       ||+||+.+..    . ....    ++++++++.+++.+                                  ++.|+||
T Consensus       155 lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPt  234 (659)
T PLN03211        155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT  234 (659)
T ss_pred             CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCC
Confidence             9999998742    1 1122    23456666666532                                  2446799


Q ss_pred             CCCCHHHHHHHHHHHHHhc-CCcEEEEEecCch-hh-hcCCeEEEEeCCeEEeecCCch
Q psy10472        122 GALDNESEKLVQAALESAC-KGRTVLMIAHRLS-TV-QNADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~-~~-~~~d~v~~l~~G~i~~~~~~~~  177 (181)
                      ++||+.++..+.+.+++++ +|+|||++||+++ .+ ..||++++|++|+++. .++.+
T Consensus       235 sgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~-~G~~~  292 (659)
T PLN03211        235 SGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLF-FGKGS  292 (659)
T ss_pred             CCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEE-ECCHH
Confidence            9999999999999999875 5899999999998 35 4599999999999987 45443

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=3.2e-32  Score=217.27  Aligned_cols=153  Identities=17%  Similarity=0.286  Sum_probs=121.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.              +++++|++.+++ .|+
T Consensus        37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~--------------~~~~~~~~~~~~~~tv  102 (264)
T PRK13546         37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE--------------VSVIAISAGLSGQLTG  102 (264)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE--------------EeEEecccCCCCCCcH
Confidence            46899999999999999999999999999999999999999999999984              346677766665 499


Q ss_pred             HHHhhcCC--CCCCHHH----HHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGD--SSVSDEQ----IEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~--~~~~~~~----~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      .+|+.++.  .....+.    +..+++.+++..                             ++.|+|+++||+.+++.+
T Consensus       103 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l  182 (264)
T PRK13546        103 IENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKC  182 (264)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHH
Confidence            99997531  1111221    223344333222                             356779999999999999


Q ss_pred             HHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        133 QAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       133 ~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      .+.+.++. ++.|+|++||+++.+.. ||++++|++|++++ .++.
T Consensus       183 ~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~-~g~~  227 (264)
T PRK13546        183 LDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD-YGEL  227 (264)
T ss_pred             HHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE-eCCH
Confidence            99998764 58999999999999866 99999999999987 3443

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-32  Score=236.97  Aligned_cols=154  Identities=18%  Similarity=0.379  Sum_probs=124.3

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-S   86 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t   86 (181)
                      .+++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.            ..++|++|++.+++. |
T Consensus        13 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~~~~q~~~~~~~~t   80 (530)
T PRK15064         13 AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN------------ERLGKLRQDQFAFEEFT   80 (530)
T ss_pred             CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------------CEEEEEeccCCcCCCCc
Confidence            356999999999999999999999999999999999999999999999872            138999999988765 9


Q ss_pred             HHHHhhcCCCC--------------------------------------CCHHHHHHHHHHhcccc--------------
Q psy10472         87 VRENIRYGDSS--------------------------------------VSDEQIEEAAKLANAHG--------------  114 (181)
Q Consensus        87 v~enl~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~--------------  114 (181)
                      +.||+.++...                                      ....++.++++.+++..              
T Consensus        81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq  160 (530)
T PRK15064         81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGW  160 (530)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHH
Confidence            99998764210                                      00123445555554421              


Q ss_pred             ----------------ccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472        115 ----------------FISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ  175 (181)
Q Consensus       115 ----------------~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~  175 (181)
                                      ++.|+||++||+.+++.+.++|.+  .+.|||+||||++.+.. ||++++|++|+++.+.+.
T Consensus       161 ~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~  236 (530)
T PRK15064        161 KLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGN  236 (530)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCC
Confidence                            355779999999999999999864  47899999999999866 999999999999532443

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-32  Score=208.19  Aligned_cols=167  Identities=29%  Similarity=0.377  Sum_probs=138.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC--CCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY--DVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~--~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +.+|++|||+|++||+.+|+||||||||||.++|+|.-  ++++|+|.++|++|..+++.+..+..+.+.||.|.-+++ 
T Consensus        17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV   96 (251)
T COG0396          17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV   96 (251)
T ss_pred             hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence            58999999999999999999999999999999999984  789999999999999999887766779999999998988 


Q ss_pred             cHHHHhhcCCCC---C------CHHHHHHHHHHhcccc-------------------------------ccccCCCCCCC
Q psy10472         86 SVRENIRYGDSS---V------SDEQIEEAAKLANAHG-------------------------------FISEFPSGALD  125 (181)
Q Consensus        86 tv~enl~~~~~~---~------~~~~~~~~~~~~~~~~-------------------------------~~~~~P~~~LD  125 (181)
                      ++.+.+..+...   .      -..+++++++.+++..                               .+.|+|-|+||
T Consensus        97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD  176 (251)
T COG0396          97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD  176 (251)
T ss_pred             eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence            888888654211   0      1223444454444332                               35577999999


Q ss_pred             HHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc--CCeEEEEeCCeEEeecCCc
Q psy10472        126 NESEKLVQAALESAC-KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       126 ~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~--~d~v~~l~~G~i~~~~~~~  176 (181)
                      ..+-+.+.+.++.++ ++.++++|||..+.+.+  .|+|.+|-+|+|+. .+.+
T Consensus       177 Idalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~-sG~~  229 (251)
T COG0396         177 IDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK-SGDP  229 (251)
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEe-cCCH
Confidence            999999999999876 59999999999999876  59999999999998 4443

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=5.3e-32  Score=235.91  Aligned_cols=153  Identities=29%  Similarity=0.386  Sum_probs=124.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.            ..+||+||++.+++. |+
T Consensus        20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~------------~~i~~v~Q~~~~~~~~tv   87 (556)
T PRK11819         20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG------------IKVGYLPQEPQLDPEKTV   87 (556)
T ss_pred             CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------------CEEEEEecCCCCCCCCcH
Confidence            56999999999999999999999999999999999999999999998741            239999999988875 99


Q ss_pred             HHHhhcCCC----------------CCC--------------------------HHHHHHHHHHhcccc-----------
Q psy10472         88 RENIRYGDS----------------SVS--------------------------DEQIEEAAKLANAHG-----------  114 (181)
Q Consensus        88 ~enl~~~~~----------------~~~--------------------------~~~~~~~~~~~~~~~-----------  114 (181)
                      .||+.++..                ...                          ..++.++++.+++..           
T Consensus        88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgG  167 (556)
T PRK11819         88 RENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGG  167 (556)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHH
Confidence            999976421                000                          122334444444321           


Q ss_pred             -----------------ccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472        115 -----------------FISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ  175 (181)
Q Consensus       115 -----------------~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~  175 (181)
                                       ++.|+||++||+.++..+.+.|+++.  .|||+||||++++.. ||+|++|++|+++.+.+.
T Consensus       168 qkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~  244 (556)
T PRK11819        168 ERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGN  244 (556)
T ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCC
Confidence                             35677999999999999999998764  599999999999976 999999999998743444

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=4.8e-32  Score=222.15  Aligned_cols=143  Identities=27%  Similarity=0.473  Sum_probs=117.4

Q ss_pred             EECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhhcCCC--CCC----
Q psy10472         27 IVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIRYGDS--SVS----   99 (181)
Q Consensus        27 liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~~~~~--~~~----   99 (181)
                      |+|||||||||||++|+|+++|++|+|.++|+++...+..  ++ .++|+||++.+|+. |+.||+.|+..  ...    
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~--~~-~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~   77 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LR-HINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEI   77 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HC-CEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHH
Confidence            6899999999999999999999999999999998765432  33 49999999999975 99999998632  111    


Q ss_pred             HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEE
Q psy10472        100 DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALESAC-K-GRTVLMI  148 (181)
Q Consensus       100 ~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~v  148 (181)
                      .+++.++++.+++..                             ++.|+|+++||+.+++.+.+.|+++. + |+|+|+|
T Consensus        78 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv  157 (325)
T TIGR01187        78 KPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV  157 (325)
T ss_pred             HHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            234556666665543                             35577999999999999999998864 3 8999999


Q ss_pred             ecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        149 AHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       149 tHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      |||++++.. ||++++|++|+++..
T Consensus       158 THd~~e~~~~~d~i~vl~~G~i~~~  182 (325)
T TIGR01187       158 THDQEEAMTMSDRIAIMRKGKIAQI  182 (325)
T ss_pred             eCCHHHHHHhCCEEEEEECCEEEEE
Confidence            999999865 999999999999873

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.1e-33  Score=226.70  Aligned_cols=170  Identities=48%  Similarity=0.747  Sum_probs=152.8

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV   87 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv   87 (181)
                      .+++|+++||++++|+.++++||||+||||++++|.+++++++|.|.++|+++.......+|+. ||.|||+..||+.|+
T Consensus       275 ~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~a-Ig~VPQDtvLFNDti  353 (497)
T COG5265         275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA-IGIVPQDTVLFNDTI  353 (497)
T ss_pred             cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHH-hCcCcccceehhhhH
Confidence            3679999999999999999999999999999999999999999999999999988877778876 999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHhcccccc----------------------------------------ccCCCCCCCHH
Q psy10472         88 RENIRYGDSSVSDEQIEEAAKLANAHGFI----------------------------------------SEFPSGALDNE  127 (181)
Q Consensus        88 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~P~~~LD~~  127 (181)
                      ..|+.++......+++..+++.+.+.+++                                        .|+.|++||..
T Consensus       354 ~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~  433 (497)
T COG5265         354 AYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTH  433 (497)
T ss_pred             HHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhh
Confidence            99999998777888887777766554433                                        34456899999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      +++.+...|+....|.|.++|.|.++.+..||.|++|++|+|+| .|+++++
T Consensus       434 te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~e-rg~h~~l  484 (497)
T COG5265         434 TEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVE-RGTHEEL  484 (497)
T ss_pred             HHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEe-cCcHHHH
Confidence            99999999999989999999999999999999999999999999 6777654

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=1.1e-31  Score=232.84  Aligned_cols=155  Identities=22%  Similarity=0.321  Sum_probs=126.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--Ccc-c
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFA-T   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~-~   85 (181)
                      +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.            ..+||++|++.  +++ .
T Consensus       332 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~------------~~i~~~~q~~~~~~~~~~  399 (530)
T PRK15064        332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN------------ANIGYYAQDHAYDFENDL  399 (530)
T ss_pred             ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc------------eEEEEEcccccccCCCCC
Confidence            46899999999999999999999999999999999999999999999872            23999999974  444 4


Q ss_pred             cHHHHhhcCC-CCCCHHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCHHHHHHHHH
Q psy10472         86 SVRENIRYGD-SSVSDEQIEEAAKLANAH-G-----------------------------FISEFPSGALDNESEKLVQA  134 (181)
Q Consensus        86 tv~enl~~~~-~~~~~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~~~~~~i~~  134 (181)
                      |+.+|+.+.. .....+++.++++.+++. .                             ++.|+||++||+.+++.+.+
T Consensus       400 t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~  479 (530)
T PRK15064        400 TLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM  479 (530)
T ss_pred             cHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence            9999986532 122344556666666542 1                             35677999999999999999


Q ss_pred             HHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        135 ALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       135 ~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      .++.+  +.|||+||||++++.. ||++++|++|+++...++..
T Consensus       480 ~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~  521 (530)
T PRK15064        480 ALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYE  521 (530)
T ss_pred             HHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHH
Confidence            99876  3599999999999876 99999999999984345443

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.98  E-value=4.4e-32  Score=203.12  Aligned_cols=164  Identities=21%  Similarity=0.389  Sum_probs=140.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC-EECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG-VDLKHLDGTWLRGNVIGLINQEPVLFAT-S   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g-~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t   86 (181)
                      -.+|+++||++.+||.-+|+|||||||||++.+|+|-.+|+.|+|+++| .+++.++...+.+..||-=||.|..|.. |
T Consensus        18 F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~lt   97 (249)
T COG4674          18 FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLT   97 (249)
T ss_pred             eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhcc
Confidence            4689999999999999999999999999999999999999999999999 8999998877777789999999999976 9


Q ss_pred             HHHHhhcCCCC--------------CCHHHHHHHHHHhcccc-----------------------------ccccCCCCC
Q psy10472         87 VRENIRYGDSS--------------VSDEQIEEAAKLANAHG-----------------------------FISEFPSGA  123 (181)
Q Consensus        87 v~enl~~~~~~--------------~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~  123 (181)
                      |+||+.++...              ....++++++...++.+                             ++.|+|.++
T Consensus        98 V~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAG  177 (249)
T COG4674          98 VRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAG  177 (249)
T ss_pred             HHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCC
Confidence            99999765211              12335666665444322                             356779999


Q ss_pred             CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +-.+.....-++++.++..++|++|.||++++.. |++|-+|+.|.+...
T Consensus       178 MTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~E  227 (249)
T COG4674         178 MTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAE  227 (249)
T ss_pred             CcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeec
Confidence            9999999999999999989999999999999976 999999999999763

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.98  E-value=7.3e-32  Score=206.24  Aligned_cols=146  Identities=21%  Similarity=0.317  Sum_probs=115.9

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc-cccHHHH
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF-ATSVREN   90 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~-~~tv~en   90 (181)
                      +.++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....    + +.++|++|++.++ ..|+.||
T Consensus        16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~-~~~~~~~~~~~~~~~~tv~~~   90 (195)
T PRK13541         16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----K-PYCTYIGHNLGLKLEMTVFEN   90 (195)
T ss_pred             EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----h-hhEEeccCCcCCCccCCHHHH
Confidence            44599999999999999999999999999999999999999999998875432    2 2489999988665 4699999


Q ss_pred             hhcCCCC-CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHHHh-
Q psy10472         91 IRYGDSS-VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALESA-  139 (181)
Q Consensus        91 l~~~~~~-~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~~~-  139 (181)
                      +.+.... ...+++.++++.+++..                             ++.|+|+++||+.+++.+.++++.. 
T Consensus        91 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~  170 (195)
T PRK13541         91 LKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKA  170 (195)
T ss_pred             HHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            9875321 12334455555544322                             3567799999999999999999754 


Q ss_pred             cCCcEEEEEecCchhhhcCCeEE
Q psy10472        140 CKGRTVLMIAHRLSTVQNADLIV  162 (181)
Q Consensus       140 ~~~~tii~vtHd~~~~~~~d~v~  162 (181)
                      .++.|+|++||+++.+..||.+.
T Consensus       171 ~~~~tiii~sh~~~~i~~~~~~~  193 (195)
T PRK13541        171 NSGGIVLLSSHLESSIKSAQILQ  193 (195)
T ss_pred             hCCCEEEEEeCCccccchhheec
Confidence            45899999999999998887653

>PLN03130 ABC transporter C family member; Provisional

Probab=99.98  E-value=1.3e-31  Score=254.48  Aligned_cols=153  Identities=28%  Similarity=0.505  Sum_probs=130.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc-ceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-GNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~-G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv   87 (181)
                      +++|+|+||+|++|++++|+||||||||||+++|+|.++|++ |+|.+.+              .|+||+|+|++|++||
T Consensus       630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~--------------~Iayv~Q~p~LfngTI  695 (1622)
T PLN03130        630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG--------------TVAYVPQVSWIFNATV  695 (1622)
T ss_pred             CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC--------------eEEEEcCccccCCCCH
Confidence            468999999999999999999999999999999999999999 8997532              3999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472         88 RENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE  127 (181)
Q Consensus        88 ~enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~  127 (181)
                      +|||.|+.+ .++++.+++++.+++..                                        ++.|+|+++||++
T Consensus       696 reNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~  774 (1622)
T PLN03130        696 RDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAH  774 (1622)
T ss_pred             HHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHH
Confidence            999999864 46777788877665433                                        2446699999999


Q ss_pred             HHHHHH-HHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCch
Q psy10472        128 SEKLVQ-AALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       128 ~~~~i~-~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~  177 (181)
                      +.+.+. ++++...+++|+|+|||+++.+..||+|++|++|++++ .++++
T Consensus       775 ~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e-~Gt~~  824 (1622)
T PLN03130        775 VGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKE-EGTYE  824 (1622)
T ss_pred             HHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEE-eCCHH
Confidence            887765 45665556899999999999998899999999999998 45544

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.98  E-value=1.8e-31  Score=232.46  Aligned_cols=154  Identities=28%  Similarity=0.372  Sum_probs=122.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.            ..|||+||++.+++. |+
T Consensus        18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~------------~~i~~v~Q~~~~~~~~tv   85 (552)
T TIGR03719        18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG------------IKVGYLPQEPQLDPTKTV   85 (552)
T ss_pred             CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------------CEEEEEeccCCCCCCCcH
Confidence            56999999999999999999999999999999999999999999998751            239999999988865 99


Q ss_pred             HHHhhcCCCC-----------------CCH-------------------------HHHHHHHHHhccc------------
Q psy10472         88 RENIRYGDSS-----------------VSD-------------------------EQIEEAAKLANAH------------  113 (181)
Q Consensus        88 ~enl~~~~~~-----------------~~~-------------------------~~~~~~~~~~~~~------------  113 (181)
                      .||+.++...                 ...                         .++.++++.+++.            
T Consensus        86 ~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgG  165 (552)
T TIGR03719        86 RENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGG  165 (552)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHH
Confidence            9999874210                 001                         1122233333321            


Q ss_pred             ----------------cccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        114 ----------------GFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       114 ----------------~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                                      -++.|+||++||+.+++.+.+.|+++.  .|||+||||++.+.. ||++++|++|+++...+..
T Consensus       166 qkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~  243 (552)
T TIGR03719       166 ERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNY  243 (552)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCH
Confidence                            135678999999999999999998763  599999999999976 9999999999986434443

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.98  E-value=1.2e-31  Score=236.08  Aligned_cols=165  Identities=24%  Similarity=0.419  Sum_probs=133.4

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCEECCCCChhhhccCcEEEEccCCCCcc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA   84 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~   84 (181)
                      .+++|+|+|+++++||+++|+|||||||||||++|+|..+|.   +|+|.++|.++..   ..+++ .+||++|++.+++
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~---~~~~~-~i~yv~Q~~~~~~  112 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA---KEMRA-ISAYVQQDDLFIP  112 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH---HHHhh-hceeeccccccCc
Confidence            467999999999999999999999999999999999999885   7999999998642   33444 4999999999987


Q ss_pred             c-cHHHHhhcCCCC-----CC----HHHHHHHHHHhcccc-----------------------------------ccccC
Q psy10472         85 T-SVRENIRYGDSS-----VS----DEQIEEAAKLANAHG-----------------------------------FISEF  119 (181)
Q Consensus        85 ~-tv~enl~~~~~~-----~~----~~~~~~~~~~~~~~~-----------------------------------~~~~~  119 (181)
                      . ||+||+.|+...     ..    .++++++++.+++.+                                   ++.|+
T Consensus       113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE  192 (617)
T TIGR00955       113 TLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE  192 (617)
T ss_pred             cCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence            5 999999875311     11    223556666655422                                   24467


Q ss_pred             CCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCch-hh-hcCCeEEEEeCCeEEeecCCch
Q psy10472        120 PSGALDNESEKLVQAALESAC-KGRTVLMIAHRLS-TV-QNADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       120 P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~-~~-~~~d~v~~l~~G~i~~~~~~~~  177 (181)
                      |+++||+.++..+++.+++++ +|+|+|+++|+++ .+ ..||++++|++|+++. .++.+
T Consensus       193 PtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~-~G~~~  252 (617)
T TIGR00955       193 PTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY-LGSPD  252 (617)
T ss_pred             CCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE-ECCHH
Confidence            999999999999999999875 4899999999996 45 5599999999999988 45443

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.98  E-value=2.1e-31  Score=206.49  Aligned_cols=149  Identities=19%  Similarity=0.292  Sum_probs=113.2

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEE-ECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNIT-ISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~-i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      .+|+||||+|++|++++|+||||||||||+++|+|+++|++|+|. ++|..+              .+.+.+.+|+. |+
T Consensus         1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~--------------~~~~~~~l~~~ltv   66 (213)
T PRK15177          1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL--------------PLGANSFILPGLTG   66 (213)
T ss_pred             CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee--------------ccccccccCCcCcH
Confidence            379999999999999999999999999999999999999999997 766432              12245567775 99


Q ss_pred             HHHhhcCCC--CCCHHHH-HHHHHHhcc-----------------------------ccccccCCCCCCCHHHHHHHHHH
Q psy10472         88 RENIRYGDS--SVSDEQI-EEAAKLANA-----------------------------HGFISEFPSGALDNESEKLVQAA  135 (181)
Q Consensus        88 ~enl~~~~~--~~~~~~~-~~~~~~~~~-----------------------------~~~~~~~P~~~LD~~~~~~i~~~  135 (181)
                      .||+.+...  ....++. ..+.+.+++                             .-++.|+|++++|+.+++.+.+.
T Consensus        67 ~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~  146 (213)
T PRK15177         67 EENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAA  146 (213)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHH
Confidence            999976421  1222221 111111111                             12466889999999999999998


Q ss_pred             HHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        136 LESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       136 l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +.+..++.|+|++||+++.+.. ||++++|++|+++..
T Consensus       147 l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~  184 (213)
T PRK15177        147 LACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMC  184 (213)
T ss_pred             HHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEe
Confidence            7654445789999999999865 999999999999873

>PLN03232 ABC transporter C family member; Provisional

Probab=99.98  E-value=1.4e-31  Score=253.52  Aligned_cols=155  Identities=28%  Similarity=0.465  Sum_probs=130.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|.+.            .++. .|+||+|+|++|++||+
T Consensus       630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~-~Iayv~Q~p~Lf~gTIr  696 (1495)
T PLN03232        630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRG-SVAYVPQVSWIFNATVR  696 (1495)
T ss_pred             CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecC-cEEEEcCccccccccHH
Confidence            5689999999999999999999999999999999999999998763            1233 49999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      |||.|+.+ .++++.+++++.+++..                                        ++.|+|+++||+++
T Consensus       697 eNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t  775 (1495)
T PLN03232        697 ENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHV  775 (1495)
T ss_pred             HHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence            99999863 56777787877665432                                        34566999999999


Q ss_pred             HHHHHHH-HHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472        129 EKLVQAA-LESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       129 ~~~i~~~-l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      ++.+.+. +....+++|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus       776 ~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~-~Gt~~e  825 (1495)
T PLN03232        776 AHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKE-EGTFAE  825 (1495)
T ss_pred             HHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEE-ecCHHH
Confidence            8877654 555557899999999999988899999999999998 455443

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.98  E-value=2.3e-31  Score=210.44  Aligned_cols=148  Identities=20%  Similarity=0.293  Sum_probs=117.9

Q ss_pred             ccccceeeEEec-----CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472          9 KTILKDFNLRIP-----AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF   83 (181)
Q Consensus         9 ~~vl~~isl~i~-----~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~   83 (181)
                      ...+++++|++.     +||+++|+||||||||||+++|+|+++|++|+|.++|.             .++|++|++.++
T Consensus         7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-------------~i~~~~q~~~~~   73 (246)
T cd03237           7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-------------TVSYKPQYIKAD   73 (246)
T ss_pred             ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-------------eEEEecccccCC
Confidence            447788888886     69999999999999999999999999999999999883             289999998754


Q ss_pred             -cccHHHHhhcCCCC--CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472         84 -ATSVRENIRYGDSS--VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL  131 (181)
Q Consensus        84 -~~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~  131 (181)
                       ..|+.||+.+....  .......++++.+++..                             ++.|+|+++||+.++..
T Consensus        74 ~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~  153 (246)
T cd03237          74 YEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLM  153 (246)
T ss_pred             CCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence             56999999754211  11222344444444322                             45678999999999999


Q ss_pred             HHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeE
Q psy10472        132 VQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI  169 (181)
Q Consensus       132 i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i  169 (181)
                      +.++|+++.  .++|||+||||++.+.. ||++++|+++..
T Consensus       154 l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~  194 (246)
T cd03237         154 ASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPS  194 (246)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCe
Confidence            999998864  38999999999999876 999999976543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=6.3e-32  Score=204.95  Aligned_cols=165  Identities=24%  Similarity=0.369  Sum_probs=129.5

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--Ccc-
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFA-   84 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~-   84 (181)
                      ++++|+++|++|++|+++.|+|.||||||||+++|+|.+.|++|+|.|+|.++++++..+.. ..++-|||+|.  .++ 
T Consensus        18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA-~~larVfQdp~~gt~~~   96 (263)
T COG1101          18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA-NLLARVFQDPLAGTAPE   96 (263)
T ss_pred             HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHh-hHHHHHhcchhhCCccc
Confidence            46799999999999999999999999999999999999999999999999999998866543 45899999993  565 


Q ss_pred             ccHHHHhhcCCCC-----CC----H---HHHHHHHHHhc--c-----------------------------ccccccCCC
Q psy10472         85 TSVRENIRYGDSS-----VS----D---EQIEEAAKLAN--A-----------------------------HGFISEFPS  121 (181)
Q Consensus        85 ~tv~enl~~~~~~-----~~----~---~~~~~~~~~~~--~-----------------------------~~~~~~~P~  121 (181)
                      .|+.||+.++..+     ..    .   +...+.+..++  +                             .-++.|+-|
T Consensus        97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHT  176 (263)
T COG1101          97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHT  176 (263)
T ss_pred             ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchh
Confidence            4999999875211     00    1   11111111111  0                             113456678


Q ss_pred             CCCCHHHHHHHHHHHHHh-c-CCcEEEEEecCchhhh-cCCeEEEEeCCeEEeec
Q psy10472        122 GALDNESEKLVQAALESA-C-KGRTVLMIAHRLSTVQ-NADLIVVLQAGQIVEML  173 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~-~-~~~tii~vtHd~~~~~-~~d~v~~l~~G~i~~~~  173 (181)
                      ++|||.+.+.+++.-.+. . .+.|.+||||+++.+- +.+|.++|++|+|+.+.
T Consensus       177 AALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv  231 (263)
T COG1101         177 AALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV  231 (263)
T ss_pred             hcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence            999999999999987764 3 3789999999999884 58999999999998643

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.97  E-value=3.7e-31  Score=216.26  Aligned_cols=167  Identities=29%  Similarity=0.432  Sum_probs=138.2

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCC--C
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPV--L   82 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~--l   82 (181)
                      ...++++|||++++||.++|+|+||||||||=.+|.+++++. |+|.|+|+++..++...   +|++ +.+|||+|+  |
T Consensus       299 ~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~-mQvVFQDPygSL  376 (534)
T COG4172         299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRR-MQVVFQDPYGSL  376 (534)
T ss_pred             heEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhh-ceEEEeCCCCCC
Confidence            346899999999999999999999999999999999999886 99999999998877544   4544 999999994  4


Q ss_pred             cc-ccHHHHhhcCCC----CC----CHHHHHHHHHHhcccc------------------------------ccccCCCCC
Q psy10472         83 FA-TSVRENIRYGDS----SV----SDEQIEEAAKLANAHG------------------------------FISEFPSGA  123 (181)
Q Consensus        83 ~~-~tv~enl~~~~~----~~----~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~  123 (181)
                      -| +||.+-|..+..    ..    ..+++.++++.++++.                              .+.|+||++
T Consensus       377 sPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSA  456 (534)
T COG4172         377 SPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSA  456 (534)
T ss_pred             CcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchH
Confidence            45 499988876631    11    2345667777776653                              356779999


Q ss_pred             CCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        124 LDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      ||..-+.++.++|+.+.  .|.+-++||||+..+.. ||+|++|++|+|+|. ++.+
T Consensus       457 LD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~-G~~~  512 (534)
T COG4172         457 LDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ-GPTE  512 (534)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeee-CCHH
Confidence            99999999999999864  48999999999999976 999999999999994 5433

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.97  E-value=6.3e-31  Score=248.87  Aligned_cols=152  Identities=24%  Similarity=0.409  Sum_probs=125.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|              .|+|++|+|++|++|++
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--------------~iayv~Q~~~l~~~Ti~  504 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--------------RISFSPQTSWIMPGTIK  504 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--------------EEEEEeCCCccCCccHH
Confidence            4689999999999999999999999999999999999999999999987              28999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhccc----------------------------------------cccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAH----------------------------------------GFISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~P~~~LD~~~  128 (181)
                      |||.|+.. .+.++..++++.+++.                                        -++.|+|+++||+.+
T Consensus       505 eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~  583 (1490)
T TIGR01271       505 DNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT  583 (1490)
T ss_pred             HHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence            99999853 2222223332222111                                        135577999999999


Q ss_pred             HHHHHHH-HHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472        129 EKLVQAA-LESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       129 ~~~i~~~-l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++.+.+. +....+++|+|+|||+++.+..||+|++|++|++++ .++.
T Consensus       584 ~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~-~g~~  631 (1490)
T TIGR01271       584 EKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYF-YGTF  631 (1490)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEE-EcCH
Confidence            9999974 566656899999999999998899999999999987 3443

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=2.5e-31  Score=194.20  Aligned_cols=165  Identities=25%  Similarity=0.408  Sum_probs=133.1

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEEC--CCCCh----hhhccCcEEEEccCC
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL--KHLDG----TWLRGNVIGLINQEP   80 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i--~~~~~----~~~r~~~i~~v~q~~   80 (181)
                      +..++|.||+|+.+.||.+.++||||+|||||+|.|.-+.-|.+|+..|.|...  +..+.    ..+|+. +|+|||..
T Consensus        13 g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~-vgmvfqqy   91 (242)
T COG4161          13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRN-VGMVFQQY   91 (242)
T ss_pred             ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHh-hhhhhhhh
Confidence            346799999999999999999999999999999999999999999999988643  22221    245655 99999999


Q ss_pred             CCccc-cHHHHhhcCCCC---CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCC
Q psy10472         81 VLFAT-SVRENIRYGDSS---VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGA  123 (181)
Q Consensus        81 ~l~~~-tv~enl~~~~~~---~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~  123 (181)
                      .++|. ||.||+..+...   ..    ..+..+.++.+.+.+                             ++.++||++
T Consensus        92 ~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaa  171 (242)
T COG4161          92 NLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAA  171 (242)
T ss_pred             ccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccc
Confidence            99986 999998764211   11    122334444443333                             355679999


Q ss_pred             CCHHHHHHHHHHHHHhcC-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        124 LDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      |||+-..++.++++++.+ |.|-++|||..+.++. |.+|+.|++|+|++.
T Consensus       172 ldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~  222 (242)
T COG4161         172 LDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ  222 (242)
T ss_pred             cCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEee
Confidence            999999999999999875 9999999999999977 999999999999994

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.97  E-value=7.7e-31  Score=248.78  Aligned_cols=152  Identities=25%  Similarity=0.449  Sum_probs=127.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|              .|+|++|+|++|++|++
T Consensus       651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i~yv~Q~~~l~~~Ti~  716 (1522)
T TIGR00957       651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--------------SVAYVPQQAWIQNDSLR  716 (1522)
T ss_pred             CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--------------EEEEEcCCccccCCcHH
Confidence            4699999999999999999999999999999999999999999999986              29999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhccc----------------------------------------cccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAH----------------------------------------GFISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~P~~~LD~~~  128 (181)
                      |||.|+.. .++++.+++++.+++.                                        -++.|+|+++||+.+
T Consensus       717 eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~  795 (1522)
T TIGR00957       717 ENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV  795 (1522)
T ss_pred             HHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence            99999853 3344444444332211                                        135577999999999


Q ss_pred             HHHHHHHHHH---hcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472        129 EKLVQAALES---ACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       129 ~~~i~~~l~~---~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++.+.+.+..   ..+++|+|+|||+++.+..||+|++|++|++++ .+++
T Consensus       796 ~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~-~g~~  845 (1522)
T TIGR00957       796 GKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISE-MGSY  845 (1522)
T ss_pred             HHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEe-eCCH
Confidence            9999998853   345899999999999998899999999999987 4543

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.97  E-value=8.1e-31  Score=223.64  Aligned_cols=150  Identities=25%  Similarity=0.369  Sum_probs=118.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv   87 (181)
                      +++|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.+.           .+++   .+.+++ .|+
T Consensus        37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~-----------~i~~---~~~l~~~lTV  102 (549)
T PRK13545         37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA-----------LIAI---SSGLNGQLTG  102 (549)
T ss_pred             ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee-----------eEEe---ccccCCCCcH
Confidence            4589999999999999999999999999999999999999999999999641           0222   233444 499


Q ss_pred             HHHhhcCC--CCCCHH----HHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGD--SSVSDE----QIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~--~~~~~~----~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +||+.+..  .....+    .+.++++.+++..                             ++.|+|+++||+.+++.+
T Consensus       103 ~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~L  182 (549)
T PRK13545        103 IENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKC  182 (549)
T ss_pred             HHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence            99997632  111221    2334455444322                             356779999999999999


Q ss_pred             HHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        133 QAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       133 ~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++.|+++. +|+|||++|||++.+.. ||++++|++|++++.
T Consensus       183 lelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~  224 (549)
T PRK13545        183 LDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEY  224 (549)
T ss_pred             HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            99998864 58999999999999866 999999999999873

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.97  E-value=1.2e-30  Score=230.50  Aligned_cols=155  Identities=27%  Similarity=0.414  Sum_probs=124.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC-CCccc-c
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP-VLFAT-S   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~-~l~~~-t   86 (181)
                      +++|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+ |.++           .|||++|++ .+++. |
T Consensus       332 ~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~-----------~i~y~~q~~~~l~~~~t  399 (635)
T PRK11147        332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-----------EVAYFDQHRAELDPEKT  399 (635)
T ss_pred             eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-----------EEEEEeCcccccCCCCC
Confidence            46899999999999999999999999999999999999999999998 5321           399999986 46664 9


Q ss_pred             HHHHhhcCCCCC--C--HHHHHHHHHHhccc------------------------------cccccCCCCCCCHHHHHHH
Q psy10472         87 VRENIRYGDSSV--S--DEQIEEAAKLANAH------------------------------GFISEFPSGALDNESEKLV  132 (181)
Q Consensus        87 v~enl~~~~~~~--~--~~~~~~~~~~~~~~------------------------------~~~~~~P~~~LD~~~~~~i  132 (181)
                      |.+|+.++....  .  ...+..++..+++.                              -++.|+||++||+.+++.+
T Consensus       400 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l  479 (635)
T PRK11147        400 VMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELL  479 (635)
T ss_pred             HHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence            999998753211  1  23344445444332                              1466789999999999999


Q ss_pred             HHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEe-CCeEEeecCCch
Q psy10472        133 QAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ-AGQIVEMLGQHE  177 (181)
Q Consensus       133 ~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~-~G~i~~~~~~~~  177 (181)
                      .++++.+  +.|||+||||.+++.. ||++++|+ +|++..+.+...
T Consensus       480 ~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~  524 (635)
T PRK11147        480 EELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYH  524 (635)
T ss_pred             HHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHH
Confidence            9999876  4599999999999965 99999998 899987655443

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.97  E-value=3.9e-31  Score=210.02  Aligned_cols=159  Identities=20%  Similarity=0.244  Sum_probs=120.2

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEE-----------ECCEECCCCChhhhcc-CcEEEEc
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNIT-----------ISGVDLKHLDGTWLRG-NVIGLIN   77 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~-----------i~g~~i~~~~~~~~r~-~~i~~v~   77 (181)
                      .+|+++|+ +.+||+++|+|||||||||||++|+|+++|++|+|.           ++|+++........+. ..++|++
T Consensus        15 ~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~   93 (255)
T cd03236          15 FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP   93 (255)
T ss_pred             hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence            58999994 999999999999999999999999999999999996           7787765432221211 1378999


Q ss_pred             cCCCCccccHHHHhhcCCCC-CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHH
Q psy10472         78 QEPVLFATSVRENIRYGDSS-VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNE  127 (181)
Q Consensus        78 q~~~l~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~  127 (181)
                      |.+.+++.++.+++.+.... ...+...++++.+++..                             ++.|+|+++||+.
T Consensus        94 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~  173 (255)
T cd03236          94 QYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK  173 (255)
T ss_pred             chhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence            98877765666665443111 11233455555554432                             3567799999999


Q ss_pred             HHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEE
Q psy10472        128 SEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV  170 (181)
Q Consensus       128 ~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~  170 (181)
                      +++.+.+.++++. +++|||++||+++.+.. ||++++|+ |++.
T Consensus       174 ~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~  217 (255)
T cd03236         174 QRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPG  217 (255)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCC
Confidence            9999999998875 48999999999999975 99999995 4454

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.97  E-value=1.7e-30  Score=226.45  Aligned_cols=153  Identities=24%  Similarity=0.353  Sum_probs=123.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC-CCccc-c
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP-VLFAT-S   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~-~l~~~-t   86 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++           .+||+||++ .+++. |
T Consensus       337 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~-----------~i~~v~q~~~~~~~~~t  404 (556)
T PRK11819        337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV-----------KLAYVDQSRDALDPNKT  404 (556)
T ss_pred             eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce-----------EEEEEeCchhhcCCCCC
Confidence            4589999999999999999999999999999999999999999999854 11           399999997 56654 9


Q ss_pred             HHHHhhcCCCC----CCHHHHHHHHHHhcccc------------------------------ccccCCCCCCCHHHHHHH
Q psy10472         87 VRENIRYGDSS----VSDEQIEEAAKLANAHG------------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        87 v~enl~~~~~~----~~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +.||+.++...    ......+.+++.+++..                              ++.|+||++||+.+++.+
T Consensus       405 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l  484 (556)
T PRK11819        405 VWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRAL  484 (556)
T ss_pred             HHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence            99999875311    11223445666655531                              356779999999999999


Q ss_pred             HHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeC-CeEEeecCC
Q psy10472        133 QAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQA-GQIVEMLGQ  175 (181)
Q Consensus       133 ~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~-G~i~~~~~~  175 (181)
                      .++|..+. + |+|+||||++++.. ||++++|++ |++....+.
T Consensus       485 ~~~l~~~~-~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~  527 (556)
T PRK11819        485 EEALLEFP-G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGN  527 (556)
T ss_pred             HHHHHhCC-C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCC
Confidence            99998874 3 89999999999866 999999986 788754443

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.97  E-value=1.5e-30  Score=226.61  Aligned_cols=153  Identities=22%  Similarity=0.348  Sum_probs=123.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC-CCcc-cc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP-VLFA-TS   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~-~l~~-~t   86 (181)
                      +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ ++           .|||+||++ .+++ .|
T Consensus       335 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~-----------~i~~v~q~~~~~~~~~t  402 (552)
T TIGR03719       335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV-----------KLAYVDQSRDALDPNKT  402 (552)
T ss_pred             eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce-----------EEEEEeCCccccCCCCc
Confidence            4699999999999999999999999999999999999999999999854 11           399999997 3665 49


Q ss_pred             HHHHhhcCCCC----CCHHHHHHHHHHhcccc------------------------------ccccCCCCCCCHHHHHHH
Q psy10472         87 VRENIRYGDSS----VSDEQIEEAAKLANAHG------------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        87 v~enl~~~~~~----~~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +.||+.++...    ........+++.+++..                              ++.|+||++||+.+++.+
T Consensus       403 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l  482 (552)
T TIGR03719       403 VWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRAL  482 (552)
T ss_pred             HHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Confidence            99999875321    11223445666665531                              355779999999999999


Q ss_pred             HHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeC-CeEEeecCC
Q psy10472        133 QAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQA-GQIVEMLGQ  175 (181)
Q Consensus       133 ~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~-G~i~~~~~~  175 (181)
                      .++|+++.  .|||+||||++++.. ||++++|++ |++....+.
T Consensus       483 ~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~  525 (552)
T TIGR03719       483 EEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGN  525 (552)
T ss_pred             HHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCC
Confidence            99999874  389999999999876 999999987 587654443

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.97  E-value=3.9e-31  Score=227.40  Aligned_cols=162  Identities=23%  Similarity=0.294  Sum_probs=124.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-CcceEEECCEECCCC-ChhhhccCcEEEEccCCCCc-c-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-SSGNITISGVDLKHL-DGTWLRGNVIGLINQEPVLF-A-   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-~~G~i~i~g~~i~~~-~~~~~r~~~i~~v~q~~~l~-~-   84 (181)
                      +.+|+++||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++|+++... .....++ .++|++|++.++ . 
T Consensus       273 ~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~-~i~~v~q~~~~~~~~  351 (490)
T PRK10938        273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK-HIGYVSSSLHLDYRV  351 (490)
T ss_pred             eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh-hceEECHHHHhhccc
Confidence            4589999999999999999999999999999999998876 699999999875321 1222343 499999997654 2 


Q ss_pred             -ccHHHHhhcCCC-------CCC---HHHHHHHHHHhcccc------------------------------ccccCCCCC
Q psy10472         85 -TSVRENIRYGDS-------SVS---DEQIEEAAKLANAHG------------------------------FISEFPSGA  123 (181)
Q Consensus        85 -~tv~enl~~~~~-------~~~---~~~~~~~~~~~~~~~------------------------------~~~~~P~~~  123 (181)
                       .++.+++.++..       ...   .++++++++.+++..                              ++.|+||++
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~g  431 (490)
T PRK10938        352 STSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQG  431 (490)
T ss_pred             CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence             366666643210       011   234556666666543                              245679999


Q ss_pred             CCHHHHHHHHHHHHHhc-CC-cEEEEEecCchhhh-c-CCeEEEEeCCeEEe
Q psy10472        124 LDNESEKLVQAALESAC-KG-RTVLMIAHRLSTVQ-N-ADLIVVLQAGQIVE  171 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~-~~-~tii~vtHd~~~~~-~-~d~v~~l~~G~i~~  171 (181)
                      ||+.+++.+.++|+++. ++ .|||+||||++++. . ||++++|++|++++
T Consensus       432 LD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~  483 (490)
T PRK10938        432 LDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYR  483 (490)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEE
Confidence            99999999999998874 44 57999999999985 3 89999999999877

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.97  E-value=2.1e-30  Score=189.41  Aligned_cols=130  Identities=28%  Similarity=0.431  Sum_probs=106.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+            ..++|+||          
T Consensus        13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------------~~i~~~~~----------   70 (144)
T cd03221          13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------------VKIGYFEQ----------   70 (144)
T ss_pred             ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------------EEEEEEcc----------
Confidence            46999999999999999999999999999999999999999999999984            13999998          


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeC
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQA  166 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~  166 (181)
                        +.    ....+++.-+...+ +..-++.|+|+++||+.++..+.+.++++  +.|+|++||+++.+.. ||++++|++
T Consensus        71 --lS----~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~  142 (144)
T cd03221          71 --LS----GGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELED  142 (144)
T ss_pred             --CC----HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeC
Confidence              11    11123332222222 33446789999999999999999999876  4799999999999965 999999999


Q ss_pred             Ce
Q psy10472        167 GQ  168 (181)
Q Consensus       167 G~  168 (181)
                      |+
T Consensus       143 g~  144 (144)
T cd03221         143 GK  144 (144)
T ss_pred             CC
Confidence            85

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.97  E-value=9e-31  Score=202.19  Aligned_cols=157  Identities=27%  Similarity=0.389  Sum_probs=118.0

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV   87 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv   87 (181)
                      ...+|+||||++++||.++|+|+||||||||||+|+|.++|++|+|.++|+-..-   -.+   .+|+-|      +.|.
T Consensus        39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~l---i~l---g~Gf~p------elTG  106 (249)
T COG1134          39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL---IEL---GAGFDP------ELTG  106 (249)
T ss_pred             eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehh---hhc---ccCCCc------ccch
Confidence            3569999999999999999999999999999999999999999999999953211   110   122211      2489


Q ss_pred             HHHhhcCC-----C-CCCHHHHHHHHHHhcccccccc-----------------------------CCCCCCCHHHHHHH
Q psy10472         88 RENIRYGD-----S-SVSDEQIEEAAKLANAHGFISE-----------------------------FPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~-----------------------------~P~~~LD~~~~~~i  132 (181)
                      +||+.+..     . ...++..+++.+..++.++++.                             +-.+..|+.-++.-
T Consensus       107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~  186 (249)
T COG1134         107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC  186 (249)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHH
Confidence            99987631     1 1123445556665555554433                             33467899988888


Q ss_pred             HHHHHHh-cCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        133 QAALESA-CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       133 ~~~l~~~-~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      .+.+.++ .++.|+|+||||++.++. ||++++|++|++.. .+.++
T Consensus       187 ~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~-~G~~~  232 (249)
T COG1134         187 LERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRM-EGSPE  232 (249)
T ss_pred             HHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEE-cCCHH
Confidence            8888876 568999999999999976 99999999999988 45443

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.4e-30  Score=228.48  Aligned_cols=154  Identities=19%  Similarity=0.305  Sum_probs=121.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC--CCccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP--VLFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~--~l~~~-   85 (181)
                      +.+|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++.            ..+||++|++  .+.+. 
T Consensus       325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~igy~~Q~~~~~l~~~~  392 (638)
T PRK10636        325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG------------IKLGYFAQHQLEFLRADE  392 (638)
T ss_pred             eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC------------EEEEEecCcchhhCCccc
Confidence            46999999999999999999999999999999999999999999998641            1399999975  34443 


Q ss_pred             cHHHHhhcCCCCCCHHHHHHHHHHhccc------------------------------cccccCCCCCCCHHHHHHHHHH
Q psy10472         86 SVRENIRYGDSSVSDEQIEEAAKLANAH------------------------------GFISEFPSGALDNESEKLVQAA  135 (181)
Q Consensus        86 tv~enl~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~P~~~LD~~~~~~i~~~  135 (181)
                      |+.+++...........+..+++.+++.                              -++.|+||++||+.++..+.++
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~  472 (638)
T PRK10636        393 SPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEA  472 (638)
T ss_pred             hHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence            8888764211112233445555555442                              1466789999999999999999


Q ss_pred             HHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        136 LESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       136 l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      |..+ . .|||+||||++++.. ||++++|++|+++...+..
T Consensus       473 L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~  512 (638)
T PRK10636        473 LIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDL  512 (638)
T ss_pred             HHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCH
Confidence            9887 3 499999999999966 9999999999997434443

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.97  E-value=2.8e-30  Score=228.75  Aligned_cols=144  Identities=22%  Similarity=0.403  Sum_probs=122.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++           ++ .++|++|++.+|+.|++
T Consensus       465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~-~i~~v~Q~~~l~~~tv~  532 (659)
T TIGR00954       465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KG-KLFYVPQRPYMTLGTLR  532 (659)
T ss_pred             CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CC-cEEEECCCCCCCCcCHH
Confidence            3699999999999999999999999999999999999999999998753           22 49999999999988999


Q ss_pred             HHhhcCCC-------CCCHHHHHHHHHHhcccc--------------------------------------ccccCCCCC
Q psy10472         89 ENIRYGDS-------SVSDEQIEEAAKLANAHG--------------------------------------FISEFPSGA  123 (181)
Q Consensus        89 enl~~~~~-------~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~P~~~  123 (181)
                      ||+.++..       ...++++.++++.+++.+                                      ++.|+||++
T Consensus       533 eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~  612 (659)
T TIGR00954       533 DQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSA  612 (659)
T ss_pred             HHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence            99998631       234556667776665432                                      244669999


Q ss_pred             CCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeC
Q psy10472        124 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA  166 (181)
Q Consensus       124 LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~  166 (181)
                      ||+.+++.+.+.+++.  |+|+|+|||+++.+..||++++|+.
T Consensus       613 LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~  653 (659)
T TIGR00954       613 VSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG  653 (659)
T ss_pred             CCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence            9999999999998764  8999999999999888999999963

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.97  E-value=7.1e-30  Score=188.87  Aligned_cols=143  Identities=31%  Similarity=0.492  Sum_probs=115.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++++++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++.......+++ .++|+||          
T Consensus        12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~-~i~~~~q----------   80 (157)
T cd00267          12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRR-RIGYVPQ----------   80 (157)
T ss_pred             eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHh-ceEEEee----------
Confidence            35899999999999999999999999999999999999999999999999876554444444 4999999          


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecCchhhhc-CCeEEEEe
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQ  165 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~-~~tii~vtHd~~~~~~-~d~v~~l~  165 (181)
                        +    +....+++.-+...+ ...-++.|+|+++||+.++..+.+.+.+..+ ++|+|++||+++.+.. ||++++|+
T Consensus        81 --l----S~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~  154 (157)
T cd00267          81 --L----SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLK  154 (157)
T ss_pred             --C----CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence              1    111122222222222 2344678999999999999999999987643 6899999999999977 89999999


Q ss_pred             CCe
Q psy10472        166 AGQ  168 (181)
Q Consensus       166 ~G~  168 (181)
                      +|+
T Consensus       155 ~g~  157 (157)
T cd00267         155 DGK  157 (157)
T ss_pred             CcC
Confidence            875

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=1.4e-30  Score=204.35  Aligned_cols=158  Identities=28%  Similarity=0.370  Sum_probs=116.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      ..+++||||+|++||+++|+|+||||||||-|+|+||++|++|+|+|+|+++..++....+.+ +--+.+.-.     ..
T Consensus        26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~-v~elL~~Vg-----l~   99 (268)
T COG4608          26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRER-VLELLEKVG-----LP   99 (268)
T ss_pred             eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHH-HHHHHHHhC-----CC
Confidence            468999999999999999999999999999999999999999999999999877663222211 110000000     00


Q ss_pred             HHh--hcCCCC--CCHHHHHHHHH-HhccccccccCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCe
Q psy10472         89 ENI--RYGDSS--VSDEQIEEAAK-LANAHGFISEFPSGALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADL  160 (181)
Q Consensus        89 enl--~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~  160 (181)
                      ++.  .++...  ...+++.-+-. .++..-++.|+|+++||...+.++..++.+++  .|.|.++||||++.+.. |||
T Consensus       100 ~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdr  179 (268)
T COG4608         100 EEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDR  179 (268)
T ss_pred             HHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhccc
Confidence            111  111111  11233322111 23445577999999999999999999998875  39999999999999987 999


Q ss_pred             EEEEeCCeEEee
Q psy10472        161 IVVLQAGQIVEM  172 (181)
Q Consensus       161 v~~l~~G~i~~~  172 (181)
                      +.+|..|++++.
T Consensus       180 i~VMy~G~iVE~  191 (268)
T COG4608         180 IAVMYLGKIVEI  191 (268)
T ss_pred             EEEEecCceeEe
Confidence            999999999994

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.97  E-value=4.3e-30  Score=193.62  Aligned_cols=137  Identities=25%  Similarity=0.270  Sum_probs=109.1

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcccc
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATS   86 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~t   86 (181)
                      +.+.+++++ |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+             ++|++|++.     
T Consensus        11 ~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-------------i~~~~q~~~-----   71 (177)
T cd03222          11 GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-------------PVYKPQYID-----   71 (177)
T ss_pred             CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-------------EEEEcccCC-----
Confidence            345678884 9999999999999999999999999999999999999999852             789999764     


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEE
Q psy10472         87 VRENIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIV  162 (181)
Q Consensus        87 v~enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~  162 (181)
                          +    +...++++.-+...+ ...-++.|+|+++||+.+++.+.+.+.++. + +.|+|++||+++.+.. ||+++
T Consensus        72 ----L----SgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~  143 (177)
T cd03222          72 ----L----SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIH  143 (177)
T ss_pred             ----C----CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEE
Confidence                1    111123333222222 334467899999999999999999998764 4 4899999999999875 99999


Q ss_pred             EEeCCeEE
Q psy10472        163 VLQAGQIV  170 (181)
Q Consensus       163 ~l~~G~i~  170 (181)
                      +|+++-.+
T Consensus       144 ~l~~~~~~  151 (177)
T cd03222         144 VFEGEPGV  151 (177)
T ss_pred             EEcCCCcc
Confidence            99987554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.97  E-value=5e-30  Score=241.35  Aligned_cols=159  Identities=26%  Similarity=0.462  Sum_probs=129.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC---CCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD---VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~---p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-   84 (181)
                      +.+|+|||+++++||+++|+|||||||||||++|+|+.+   |++|+|.+||+++..    .+++ .+|||+|++.+++ 
T Consensus       776 ~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~----~~~~-~i~yv~Q~~~~~~~  850 (1394)
T TIGR00956       776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS----SFQR-SIGYVQQQDLHLPT  850 (1394)
T ss_pred             cEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh----hhhc-ceeeecccccCCCC
Confidence            569999999999999999999999999999999999997   788999999998742    3444 4999999987665 


Q ss_pred             ccHHHHhhcCCC-----CCCH----HHHHHHHHHhccc----------------------------------cccccCCC
Q psy10472         85 TSVRENIRYGDS-----SVSD----EQIEEAAKLANAH----------------------------------GFISEFPS  121 (181)
Q Consensus        85 ~tv~enl~~~~~-----~~~~----~~~~~~~~~~~~~----------------------------------~~~~~~P~  121 (181)
                      .||+||+.+...     ....    ++++++++.+++.                                  -++.|+||
T Consensus       851 ~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPT  930 (1394)
T TIGR00956       851 STVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPT  930 (1394)
T ss_pred             CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCC
Confidence            599999987421     1111    2345555544331                                  14568899


Q ss_pred             CCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhh--hcCCeEEEEeCC-eEEee
Q psy10472        122 GALDNESEKLVQAALESAC-KGRTVLMIAHRLSTV--QNADLIVVLQAG-QIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~--~~~d~v~~l~~G-~i~~~  172 (181)
                      ++||+.++..+++.|++++ +|+|||++||+++..  ..||++++|++| ++++.
T Consensus       931 sgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~  985 (1394)
T TIGR00956       931 SGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYF  985 (1394)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEE
Confidence            9999999999999999874 589999999999863  459999999997 99874

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.97  E-value=4.8e-30  Score=241.50  Aligned_cols=167  Identities=20%  Similarity=0.236  Sum_probs=132.2

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC----CCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY----DVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF   83 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~----~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~   83 (181)
                      .+++|+|+|+++++||+++|+||||||||||||+|+|+.    +|.+|+|.++|+++.+.. ...|+ .++|++|++.++
T Consensus        73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~-~i~yv~Q~d~~~  150 (1394)
T TIGR00956        73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRG-DVVYNAETDVHF  150 (1394)
T ss_pred             cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCc-eeEEeccccccC
Confidence            356999999999999999999999999999999999986    579999999999875432 22333 499999999888


Q ss_pred             cc-cHHHHhhcCCC---------CCCHH----H-HHHHHHHhcccc----------------------------------
Q psy10472         84 AT-SVRENIRYGDS---------SVSDE----Q-IEEAAKLANAHG----------------------------------  114 (181)
Q Consensus        84 ~~-tv~enl~~~~~---------~~~~~----~-~~~~~~~~~~~~----------------------------------  114 (181)
                      +. ||+||+.|+..         ....+    + .+.+++.+++.+                                  
T Consensus       151 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v  230 (1394)
T TIGR00956       151 PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI  230 (1394)
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence            75 99999987521         11121    1 234566666543                                  


Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCc-hhhh-cCCeEEEEeCCeEEeecCCch
Q psy10472        115 FISEFPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRL-STVQ-NADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~-~~~~-~~d~v~~l~~G~i~~~~~~~~  177 (181)
                      ++.|+||++||+.++..+.+.|++++ + |+|+|+++|++ +.+. .+|++++|++|+++. .++.+
T Consensus       231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~-~G~~~  296 (1394)
T TIGR00956       231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIY-FGPAD  296 (1394)
T ss_pred             EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEE-ECCHH
Confidence            24467999999999999999999875 3 89999999997 4564 499999999999987 45443

>PLN03140 ABC transporter G family member; Provisional

Probab=99.96  E-value=1.2e-29  Score=238.74  Aligned_cols=165  Identities=26%  Similarity=0.314  Sum_probs=131.9

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCEECCCCChhhhccCcEEEEccCCCCcc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA   84 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~   84 (181)
                      .+.+|+|+|+.|++||+++|+||||||||||||+|+|+++|+   +|+|.++|+++....   .++ .++|++|++.+++
T Consensus       177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~-~i~yv~Q~d~~~~  252 (1470)
T PLN03140        177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRK-TSAYISQNDVHVG  252 (1470)
T ss_pred             cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccc-eeEEecccccCCC
Confidence            466999999999999999999999999999999999999998   999999999875432   233 4999999998887


Q ss_pred             c-cHHHHhhcCCCC------------CC-HH---------------------------HHHHHHHHhcccc---------
Q psy10472         85 T-SVRENIRYGDSS------------VS-DE---------------------------QIEEAAKLANAHG---------  114 (181)
Q Consensus        85 ~-tv~enl~~~~~~------------~~-~~---------------------------~~~~~~~~~~~~~---------  114 (181)
                      . ||+||+.|+...            .. .+                           .++.+++.+++..         
T Consensus       253 ~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~  332 (1470)
T PLN03140        253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDE  332 (1470)
T ss_pred             cCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCc
Confidence            5 999999875210            00 00                           1234566666542         


Q ss_pred             -------------------------ccccCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCch-hh-hcCCeEEEEe
Q psy10472        115 -------------------------FISEFPSGALDNESEKLVQAALESAC--KGRTVLMIAHRLS-TV-QNADLIVVLQ  165 (181)
Q Consensus       115 -------------------------~~~~~P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~-~~-~~~d~v~~l~  165 (181)
                                               ++.|+||++||+.++..+.+.|+++.  .|+|+|+++|++. ++ ..||+|++|+
T Consensus       333 ~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~  412 (1470)
T PLN03140        333 MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS  412 (1470)
T ss_pred             cccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee
Confidence                                     24467999999999999999999874  3899999999973 55 4599999999


Q ss_pred             CCeEEeecCCch
Q psy10472        166 AGQIVEMLGQHE  177 (181)
Q Consensus       166 ~G~i~~~~~~~~  177 (181)
                      +|+++. .++.+
T Consensus       413 ~G~ivy-~G~~~  423 (1470)
T PLN03140        413 EGQIVY-QGPRD  423 (1470)
T ss_pred             CceEEE-eCCHH
Confidence            999987 45543

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4e-29  Score=220.70  Aligned_cols=155  Identities=23%  Similarity=0.308  Sum_probs=114.4

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcccc
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATS   86 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~t   86 (181)
                      +.+++|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.++|..            .++|++|++..+..+
T Consensus        12 g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~------------~i~~~~q~~~~~~~~   79 (638)
T PRK10636         12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW------------QLAWVNQETPALPQP   79 (638)
T ss_pred             CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC------------EEEEEecCCCCCCCC
Confidence            44679999999999999999999999999999999999999999999998741            155555543222112


Q ss_pred             HHHHhh------------------------cC-------C-C-CCCHHHHHHHHHHhccc--------------------
Q psy10472         87 VRENIR------------------------YG-------D-S-SVSDEQIEEAAKLANAH--------------------  113 (181)
Q Consensus        87 v~enl~------------------------~~-------~-~-~~~~~~~~~~~~~~~~~--------------------  113 (181)
                      +.+++.                        +.       . . .....++..+++.+++.                    
T Consensus        80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~  159 (638)
T PRK10636         80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN  159 (638)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHH
Confidence            221110                        00       0 0 01123445556555542                    


Q ss_pred             ----------cccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472        114 ----------GFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ  175 (181)
Q Consensus       114 ----------~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~  175 (181)
                                -++.|+||++||+.+...+.+.|+.+  +.|||+||||.+++.. ||++++|++|++..+.+.
T Consensus       160 LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~  230 (638)
T PRK10636        160 LAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGN  230 (638)
T ss_pred             HHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCC
Confidence                      13567799999999999999999876  4699999999999966 999999999999765453

>PRK13409 putative ATPase RIL; Provisional

Probab=99.96  E-value=2.4e-29  Score=219.96  Aligned_cols=146  Identities=23%  Similarity=0.254  Sum_probs=119.4

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccHHH
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSVRE   89 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv~e   89 (181)
                      .|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++   +           .++|+||++.++. .||+|
T Consensus       354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~-----------~i~y~~Q~~~~~~~~tv~e  419 (590)
T PRK13409        354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L-----------KISYKPQYIKPDYDGTVED  419 (590)
T ss_pred             EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e-----------eEEEecccccCCCCCcHHH
Confidence            4899999999999999999999999999999999999999999885   1           2899999987665 59999


Q ss_pred             HhhcCCCCC-CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHHHh
Q psy10472         90 NIRYGDSSV-SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALESA  139 (181)
Q Consensus        90 nl~~~~~~~-~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~~~  139 (181)
                      |+.++.... ......++++.+++..                             ++.|+||++||+.++..+.++|+++
T Consensus       420 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l  499 (590)
T PRK13409        420 LLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRI  499 (590)
T ss_pred             HHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence            998752211 1233455565554432                             4567899999999999999999987


Q ss_pred             c--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        140 C--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       140 ~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      .  .|.|+|+||||++++.. |||+++|++ ++..
T Consensus       500 ~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~  533 (590)
T PRK13409        500 AEEREATALVVDHDIYMIDYISDRLMVFEG-EPGK  533 (590)
T ss_pred             HHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-ccee
Confidence            4  38999999999999876 999999965 6644

>PTZ00243 ABC transporter; Provisional

Probab=99.96  E-value=4.5e-29  Score=236.76  Aligned_cols=152  Identities=25%  Similarity=0.456  Sum_probs=121.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.              +.|+|++|+|++|+.|++
T Consensus       673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--------------~~i~yv~Q~~~l~~~Tv~  738 (1560)
T PTZ00243        673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--------------RSIAYVPQQAWIMNATVR  738 (1560)
T ss_pred             ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--------------CeEEEEeCCCccCCCcHH
Confidence            458999999999999999999999999999999999999999999762              139999999999989999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcc----------------------------------------ccccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANA----------------------------------------HGFISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~P~~~LD~~~  128 (181)
                      ||+.|+.. .+.++..++++.+++                                        .-++.|+|+++||+..
T Consensus       739 enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~  817 (1560)
T PTZ00243        739 GNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV  817 (1560)
T ss_pred             HHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence            99999743 222233333322111                                        0135677999999998


Q ss_pred             HHHHHHH-HHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472        129 EKLVQAA-LESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       129 ~~~i~~~-l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~  176 (181)
                      .+.+++. +....+|+|+|++||+++.+..||+|++|++|++++ .++.
T Consensus       818 ~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~-~G~~  865 (1560)
T PTZ00243        818 GERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEF-SGSS  865 (1560)
T ss_pred             HHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEE-ecCH
Confidence            8877764 333345899999999999998899999999999987 4443

>KOG0054|consensus

Probab=99.96  E-value=3.7e-29  Score=230.56  Aligned_cols=155  Identities=31%  Similarity=0.535  Sum_probs=133.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      .+.|+||||+|++|+.+||+||-||||||||.+|+|.++..+|+|.++|.              ++|++|.|+++++||+
T Consensus       534 ~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs--------------iaYv~Q~pWI~ngTvr  599 (1381)
T KOG0054|consen  534 EPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--------------VAYVPQQPWIQNGTVR  599 (1381)
T ss_pred             cccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--------------EEEeccccHhhCCcHH
Confidence            34899999999999999999999999999999999999999999999983              8999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      |||.||. ..++++.+++++.+.+..                                        ++.|-|.+++|.+.
T Consensus       600 eNILFG~-~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahv  678 (1381)
T KOG0054|consen  600 ENILFGS-PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHV  678 (1381)
T ss_pred             HhhhcCc-cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhh
Confidence            9999995 467777788887765543                                        23344999999997


Q ss_pred             HHHHHH-HHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        129 EKLVQA-ALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       129 ~~~i~~-~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      .+.+.+ .++..-+++|+|+|||.++.+..||+|++|++|+|.+ .|+.++.
T Consensus       679 g~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~-~Gty~el  729 (1381)
T KOG0054|consen  679 GKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVE-SGTYEEL  729 (1381)
T ss_pred             hHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEec-ccCHHHH
Confidence            666555 5655567899999999999999999999999999998 5766543

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.2e-29  Score=194.49  Aligned_cols=164  Identities=26%  Similarity=0.367  Sum_probs=131.1

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh-hhhccCcEEEEccCCC--Cc
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG-TWLRGNVIGLINQEPV--LF   83 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~-~~~r~~~i~~v~q~~~--l~   83 (181)
                      ..+++|+|+||+|++||.++|+|||||||||||++++|.++|++|.+.+.|+.....+. .++|++ ||+|...-.  +.
T Consensus        42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~-IG~vS~~L~~~~~  120 (257)
T COG1119          42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR-IGLVSSELHERFR  120 (257)
T ss_pred             CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH-hCccCHHHHhhcc
Confidence            45789999999999999999999999999999999999999999999999998876655 567765 999986532  22


Q ss_pred             c-ccHHHHhhcCC------C--CCCHH---HHHHHHHHhcccc-----------------------------ccccCCCC
Q psy10472         84 A-TSVRENIRYGD------S--SVSDE---QIEEAAKLANAHG-----------------------------FISEFPSG  122 (181)
Q Consensus        84 ~-~tv~enl~~~~------~--~~~~~---~~~~~~~~~~~~~-----------------------------~~~~~P~~  122 (181)
                      + .+++|-+.-+.      .  ..+++   +...+++.+++..                             ++.|+|++
T Consensus       121 ~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~  200 (257)
T COG1119         121 VRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQ  200 (257)
T ss_pred             cccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccc
Confidence            3 37887776431      1  22333   3344555554432                             46678999


Q ss_pred             CCCHHHHHHHHHHHHHhc-C--CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        123 ALDNESEKLVQAALESAC-K--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       123 ~LD~~~~~~i~~~l~~~~-~--~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      +||...++.+.+.+.++. .  +.++|+|||..+++.. .++++.+++|+++.
T Consensus       201 GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~  253 (257)
T COG1119         201 GLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA  253 (257)
T ss_pred             cCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence            999999999999998864 2  6899999999999976 79999999999986

>PLN03073 ABC transporter F family; Provisional

Probab=99.96  E-value=6.6e-29  Score=221.01  Aligned_cols=153  Identities=23%  Similarity=0.318  Sum_probs=117.3

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE   89 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e   89 (181)
                      .+|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.+++.           . .+||++|++. ...++.+
T Consensus       523 ~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~-----------~-~igyv~Q~~~-~~l~~~~  589 (718)
T PLN03073        523 LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-----------V-RMAVFSQHHV-DGLDLSS  589 (718)
T ss_pred             eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc-----------e-eEEEEecccc-ccCCcch
Confidence            5899999999999999999999999999999999999999999998651           1 3999999862 1123333


Q ss_pred             Hhh--cC--CCCCCHHHHHHHHHHhcccc------------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472         90 NIR--YG--DSSVSDEQIEEAAKLANAHG------------------------------FISEFPSGALDNESEKLVQAA  135 (181)
Q Consensus        90 nl~--~~--~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~~~~~~i~~~  135 (181)
                      |..  +.  ......+++..+++.+++..                              ++.|+||++||+.+++.+.+.
T Consensus       590 ~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~  669 (718)
T PLN03073        590 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQG  669 (718)
T ss_pred             hHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence            321  11  11123445556666555431                              356779999999999999988


Q ss_pred             HHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        136 LESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       136 l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      +... + .|||+||||++++.. ||++++|++|+++...+...
T Consensus       670 L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~  710 (718)
T PLN03073        670 LVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFH  710 (718)
T ss_pred             HHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHH
Confidence            8765 3 499999999999976 99999999999985445443

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.96  E-value=3.6e-29  Score=180.76  Aligned_cols=154  Identities=21%  Similarity=0.328  Sum_probs=123.0

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCEECCCCChhhhccCcEEEEccCCCCcc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA   84 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~   84 (181)
                      .+-.|-++||+|.+||++.|+||||||||||+..+.|.+.++   +|++.++++++..++...   +++|++||++.+|+
T Consensus        14 g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q---Rq~GiLFQD~lLFp   90 (213)
T COG4136          14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ---RQIGILFQDALLFP   90 (213)
T ss_pred             CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh---hheeeeeccccccc
Confidence            355788999999999999999999999999999999999875   799999999998776432   34999999999998


Q ss_pred             c-cHHHHhhcCCCC--CC---HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         85 T-SVRENIRYGDSS--VS---DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        85 ~-tv~enl~~~~~~--~~---~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                      . +|.+|+.|+.+.  ..   +.....+++..++.+                             ++.++|++.||..-+
T Consensus        91 hlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR  170 (213)
T COG4136          91 HLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALR  170 (213)
T ss_pred             ccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHH
Confidence            6 999999987432  11   222344555544433                             356779999999999


Q ss_pred             HHHHHHHH-Hhc-CCcEEEEEecCchhhhcCCeEEEE
Q psy10472        130 KLVQAALE-SAC-KGRTVLMIAHRLSTVQNADLIVVL  164 (181)
Q Consensus       130 ~~i~~~l~-~~~-~~~tii~vtHd~~~~~~~d~v~~l  164 (181)
                      .++.+..- +.. .|..+|+||||.+.+....||+-|
T Consensus       171 ~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~  207 (213)
T COG4136         171 DQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM  207 (213)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence            99999874 443 499999999999988766666655

>PLN03140 ABC transporter G family member; Provisional

Probab=99.96  E-value=5.4e-29  Score=234.42  Aligned_cols=160  Identities=24%  Similarity=0.394  Sum_probs=128.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC--CcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV--SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p--~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +.+|+|||+++++|++++|+|||||||||||++|+|..++  .+|+|.++|.+...   ..+++ .+||++|++.+++. 
T Consensus       893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~---~~~~~-~igyv~Q~d~~~~~l  968 (1470)
T PLN03140        893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFAR-ISGYCEQNDIHSPQV  968 (1470)
T ss_pred             ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCCh---HHhhh-heEEEccccccCCCC
Confidence            4699999999999999999999999999999999999763  78999999987532   23343 49999999988875 


Q ss_pred             cHHHHhhcCCC-----CCCH----HHHHHHHHHhcccc----------------------------------ccccCCCC
Q psy10472         86 SVRENIRYGDS-----SVSD----EQIEEAAKLANAHG----------------------------------FISEFPSG  122 (181)
Q Consensus        86 tv~enl~~~~~-----~~~~----~~~~~~~~~~~~~~----------------------------------~~~~~P~~  122 (181)
                      ||+||+.|+..     ..+.    +.++++++.+++..                                  ++.|+||+
T Consensus       969 TV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTs 1048 (1470)
T PLN03140        969 TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1048 (1470)
T ss_pred             cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence            99999987421     1121    23556666655432                                  34577999


Q ss_pred             CCCHHHHHHHHHHHHHhc-CCcEEEEEecCchh-h-hcCCeEEEEeC-CeEEee
Q psy10472        123 ALDNESEKLVQAALESAC-KGRTVLMIAHRLST-V-QNADLIVVLQA-GQIVEM  172 (181)
Q Consensus       123 ~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~-~-~~~d~v~~l~~-G~i~~~  172 (181)
                      +||+.++..+++.|++++ +|+|||++||+++. + ..||++++|++ |+++..
T Consensus      1049 gLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140       1049 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence            999999999999999875 58999999999984 4 45999999996 898873

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.96  E-value=1.9e-29  Score=197.23  Aligned_cols=161  Identities=22%  Similarity=0.384  Sum_probs=115.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccC-CCCcc-cc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQE-PVLFA-TS   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~-~~l~~-~t   86 (181)
                      -++++||||+|++|++++++|||||||||+||+|+|++.|++|.|.++|.+-........+  .+++|+-. .+++. ..
T Consensus        37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~--~~~~v~gqk~ql~Wdlp  114 (325)
T COG4586          37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR--SIGLVMGQKLQLWWDLP  114 (325)
T ss_pred             hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHH--HHHHHhhhhheeeeech
Confidence            3589999999999999999999999999999999999999999999999864432222222  26766533 33321 12


Q ss_pred             HHHHhhcCC--CCCC----HHHHHHHHHHhccc-----------------------------cccccCCCCCCCHHHHHH
Q psy10472         87 VRENIRYGD--SSVS----DEQIEEAAKLANAH-----------------------------GFISEFPSGALDNESEKL  131 (181)
Q Consensus        87 v~enl~~~~--~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~~P~~~LD~~~~~~  131 (181)
                      +.+-+....  ....    .++.....+.+++.                             -+..|+||-+||...+..
T Consensus       115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~  194 (325)
T COG4586         115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQAN  194 (325)
T ss_pred             hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHH
Confidence            333221100  0001    11111111211111                             245678999999999999


Q ss_pred             HHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        132 VQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       132 i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      +.+.+++..  +++||+++||+++.+.. ||||++|+.|+++.
T Consensus       195 ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~  237 (325)
T COG4586         195 IREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVF  237 (325)
T ss_pred             HHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEee
Confidence            999999874  48999999999998865 99999999999987

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.96  E-value=9.4e-29  Score=202.24  Aligned_cols=165  Identities=31%  Similarity=0.448  Sum_probs=130.4

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-----CcceEEECCEECCCCChhh---hccCcEEEEccC
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-----SSGNITISGVDLKHLDGTW---LRGNVIGLINQE   79 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-----~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~   79 (181)
                      ...++++|||+|++||.+||+|+||||||-..+.++++++.     .+|+|.|+|+++-..+...   .|..+|+++||+
T Consensus        22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQE  101 (534)
T COG4172          22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQE  101 (534)
T ss_pred             ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecc
Confidence            35689999999999999999999999999999999999864     3799999999998777544   455679999999


Q ss_pred             CC--Cccc-cHHHHh----hcCCCCCC---HHHHHHHHHHhcccc--------------------------------ccc
Q psy10472         80 PV--LFAT-SVRENI----RYGDSSVS---DEQIEEAAKLANAHG--------------------------------FIS  117 (181)
Q Consensus        80 ~~--l~~~-tv~enl----~~~~~~~~---~~~~~~~~~~~~~~~--------------------------------~~~  117 (181)
                      |.  |-|. |+...+    .+...-..   ++++.+.++.+++.+                                ++.
T Consensus       102 PMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIA  181 (534)
T COG4172         102 PMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIA  181 (534)
T ss_pred             cccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEee
Confidence            94  3343 665544    33322111   223333444433222                                577


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        118 EFPSGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       118 ~~P~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      |+||.+||...+.+|+++|++++ + |.++++||||+..+.. ||||++|.+|+++|.
T Consensus       182 DEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~  239 (534)
T COG4172         182 DEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVET  239 (534)
T ss_pred             cCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeec
Confidence            88999999999999999999875 3 9999999999999977 999999999999984

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.96  E-value=3e-28  Score=215.17  Aligned_cols=154  Identities=23%  Similarity=0.335  Sum_probs=111.6

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-cc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TS   86 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~t   86 (181)
                      .+++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|..            .+++++|.+.... .+
T Consensus        15 ~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~------------~~~~l~q~~~~~~~~~   82 (635)
T PRK11147         15 DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL------------IVARLQQDPPRNVEGT   82 (635)
T ss_pred             CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC------------EEEEeccCCCCCCCCC
Confidence            3579999999999999999999999999999999999999999999998731            1333333321100 11


Q ss_pred             HH------------------------------HHhhcC--------C-C-CCCHHHHHHHHHHhccc-------------
Q psy10472         87 VR------------------------------ENIRYG--------D-S-SVSDEQIEEAAKLANAH-------------  113 (181)
Q Consensus        87 v~------------------------------enl~~~--------~-~-~~~~~~~~~~~~~~~~~-------------  113 (181)
                      +.                              +|+.+.        . . .....++.++++.+++.             
T Consensus        83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGek  162 (635)
T PRK11147         83 VYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWL  162 (635)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHH
Confidence            21                              222110        0 0 01123344555554432             


Q ss_pred             --------------cccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472        114 --------------GFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ  175 (181)
Q Consensus       114 --------------~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~  175 (181)
                                    -++.|+||++||+.+++.+.+.|+.+.  .|||+||||..++.. ||+|++|++|+++.+.+.
T Consensus       163 qRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~  237 (635)
T PRK11147        163 RKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGN  237 (635)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCC
Confidence                          146788999999999999999998773  599999999999976 999999999999864443

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.96  E-value=4.7e-28  Score=180.23  Aligned_cols=166  Identities=21%  Similarity=0.360  Sum_probs=127.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC-c-cc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL-F-AT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l-~-~~-   85 (181)
                      ..+++.|||++++|+..+++|.||||||||.|+|+|+.+|++|+|.+||+.+.-- ....|.+.|-++||+|+- | |. 
T Consensus        26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~-Dy~~R~k~IRMiFQDpnts~NPRl  104 (267)
T COG4167          26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFG-DYSFRSKRIRMIFQDPNTSLNPRL  104 (267)
T ss_pred             hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCcccccc-chHhhhhheeeeecCCccccChhh
Confidence            3588999999999999999999999999999999999999999999999987533 344566679999999953 3 33 


Q ss_pred             cHHHHhhcCCCC---C----CHHHHHHHHHHhcccc------------------------------ccccCCCCCCCHHH
Q psy10472         86 SVRENIRYGDSS---V----SDEQIEEAAKLANAHG------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        86 tv~enl~~~~~~---~----~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~~~  128 (181)
                      .+..-+..+.+.   .    ..+++.+-++++++..                              .+.++..++||...
T Consensus       105 ~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~sm  184 (267)
T COG4167         105 RIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSM  184 (267)
T ss_pred             hhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHH
Confidence            555555444211   1    1233344444444322                              23344568999999


Q ss_pred             HHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        129 EKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       129 ~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      +.++..+.-++.  .|.+.|+|+.++..++. +|.|++|++|+++|+ +..
T Consensus       185 rsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~-G~t  234 (267)
T COG4167         185 RSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVER-GST  234 (267)
T ss_pred             HHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeec-CCh
Confidence            999998876654  39999999999999987 999999999999994 543

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=6.7e-29  Score=184.82  Aligned_cols=149  Identities=22%  Similarity=0.377  Sum_probs=121.7

Q ss_pred             cccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-
Q psy10472          6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-   84 (181)
Q Consensus         6 ~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-   84 (181)
                      ++.+.++.++||++.+||++.|.||||||||||||+|+|+.+|++|+|+|+|.++..... ..++ .+-|+-..+.+=+ 
T Consensus        12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~-~~~~-~l~yLGH~~giK~e   89 (209)
T COG4133          12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE-SYHQ-ALLYLGHQPGIKTE   89 (209)
T ss_pred             cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh-hHHH-HHHHhhccccccch
Confidence            355789999999999999999999999999999999999999999999999988865432 2333 3678888887765 


Q ss_pred             ccHHHHhhcCCCC---CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         85 TSVRENIRYGDSS---VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        85 ~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      .|+.||+.|....   .+...+.++++.+++.+                             ++.|+|+++||.+....+
T Consensus        90 LTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l  169 (209)
T COG4133          90 LTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL  169 (209)
T ss_pred             hhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHH
Confidence            4999999986321   34566788888777655                             356789999999999999


Q ss_pred             HHHHHHh-cCCcEEEEEecCchhhh
Q psy10472        133 QAALESA-CKGRTVLMIAHRLSTVQ  156 (181)
Q Consensus       133 ~~~l~~~-~~~~tii~vtHd~~~~~  156 (181)
                      ..++... .+|-.||.+||.+-.+.
T Consensus       170 ~~l~~~H~~~GGiVllttHq~l~~~  194 (209)
T COG4133         170 TALMAAHAAQGGIVLLTTHQPLPIA  194 (209)
T ss_pred             HHHHHHHhcCCCEEEEecCCccCCC
Confidence            9998764 56889999999876553

>PRK13409 putative ATPase RIL; Provisional

Probab=99.96  E-value=4.4e-29  Score=218.35  Aligned_cols=154  Identities=20%  Similarity=0.253  Sum_probs=118.2

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEE-----------ECCEECCCCChhhh-ccCcEEEEc
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNIT-----------ISGVDLKHLDGTWL-RGNVIGLIN   77 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~-----------i~g~~i~~~~~~~~-r~~~i~~v~   77 (181)
                      .+|++++ .+++|++++|+||||||||||||+|+|+++|++|+|.           ++|+++........ .+..+++.+
T Consensus        88 ~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~  166 (590)
T PRK13409         88 FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKP  166 (590)
T ss_pred             eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecc
Confidence            4899999 8999999999999999999999999999999999997           89987753221100 111245445


Q ss_pred             c----CCCCccccHHHHhhcCCCCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCC
Q psy10472         78 Q----EPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGAL  124 (181)
Q Consensus        78 q----~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~L  124 (181)
                      |    .|.+|..||.||+.+.   ...+++.++++.+++..                             ++.|+||++|
T Consensus       167 q~~~~~p~~~~~tv~e~l~~~---~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~L  243 (590)
T PRK13409        167 QYVDLIPKVFKGKVRELLKKV---DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYL  243 (590)
T ss_pred             cchhhhhhhhcchHHHHHHhh---hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence            4    4555666999998642   11233445555444322                             4667899999


Q ss_pred             CHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCC
Q psy10472        125 DNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAG  167 (181)
Q Consensus       125 D~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G  167 (181)
                      |+.++..+.+.++++.+|+|+|+||||++.+.. ||++++|+++
T Consensus       244 D~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        244 DIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE  287 (590)
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            999999999999886448999999999999976 9999999863

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.96  E-value=1.1e-27  Score=180.35  Aligned_cols=145  Identities=26%  Similarity=0.346  Sum_probs=105.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      .++|+++||+|++|++++|+|||||||||||+++.    +++|++.++|.. ..     .++..++|++|.      ...
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~-----~~~~~~~~~~q~------~~l   71 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PK-----FSRNKLIFIDQL------QFL   71 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-cc-----cccccEEEEhHH------HHH
Confidence            56899999999999999999999999999999985    379999998752 11     112238899881      122


Q ss_pred             HHhhcCC-------CCCC---HHHHHHHHHHh-c--cccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchh
Q psy10472         89 ENIRYGD-------SSVS---DEQIEEAAKLA-N--AHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLST  154 (181)
Q Consensus        89 enl~~~~-------~~~~---~~~~~~~~~~~-~--~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~  154 (181)
                      +.+.+..       ...+   .+++.-+...+ +  ..-++.|+|+++||+.+++.+.+.++++. +|.|||++||+++.
T Consensus        72 ~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~  151 (176)
T cd03238          72 IDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV  151 (176)
T ss_pred             HHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            2222211       0111   22222222222 3  34567899999999999999999998865 58999999999998


Q ss_pred             hhcCCeEEEEeCCeE
Q psy10472        155 VQNADLIVVLQAGQI  169 (181)
Q Consensus       155 ~~~~d~v~~l~~G~i  169 (181)
                      +..||++++|++|+.
T Consensus       152 ~~~~d~i~~l~~g~~  166 (176)
T cd03238         152 LSSADWIIDFGPGSG  166 (176)
T ss_pred             HHhCCEEEEECCCCC
Confidence            877999999977543

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0059|consensus

Probab=99.95  E-value=2.2e-28  Score=222.30  Aligned_cols=166  Identities=19%  Similarity=0.352  Sum_probs=136.2

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh-hhccCcEEEEccCCCCccc-cHH
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT-WLRGNVIGLINQEPVLFAT-SVR   88 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~~i~~v~q~~~l~~~-tv~   88 (181)
                      +++++||.|++||+.++.|+|||||||+++++.|..+|++|+++++|.++...... ..++ .+||.||...+++. |.+
T Consensus       580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~-~iGyCPQ~d~l~~~lT~r  658 (885)
T KOG0059|consen  580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK-QLGYCPQFDALWEELTGR  658 (885)
T ss_pred             hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh-hcccCCchhhhhhhccHH
Confidence            89999999999999999999999999999999999999999999999988654333 2444 49999999999975 999


Q ss_pred             HHhhcCCC--C----CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHH
Q psy10472         89 ENIRYGDS--S----VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQ  133 (181)
Q Consensus        89 enl~~~~~--~----~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~  133 (181)
                      |.+.+..+  .    .-.+.+++.++.+++..                             ++.|+|++|+||.+++.++
T Consensus       659 EhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW  738 (885)
T KOG0059|consen  659 EHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLW  738 (885)
T ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH
Confidence            99987531  1    11233455555554433                             3457799999999999999


Q ss_pred             HHHHHhcC-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472        134 AALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       134 ~~l~~~~~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      +++.+.++ |+++|++||.+++++. |||+.+|-+|++.. .|.++.
T Consensus       739 ~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~c-iGs~q~  784 (885)
T KOG0059|consen  739 DIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRC-IGSPQE  784 (885)
T ss_pred             HHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEE-ecChHH
Confidence            99998765 5699999999999987 99999999999987 455443

>KOG0061|consensus

Probab=99.95  E-value=4.5e-28  Score=212.61  Aligned_cols=166  Identities=31%  Similarity=0.448  Sum_probs=134.7

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC---CcceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV---SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF   83 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p---~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~   83 (181)
                      ..+++|++||..+++||++||+|||||||||||++|+|....   .+|+|.+||+..   +...+++ ..|||.|+..++
T Consensus        41 ~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~---~~~~~~~-~s~yV~QdD~l~  116 (613)
T KOG0061|consen   41 KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR---DSRSFRK-ISGYVQQDDVLL  116 (613)
T ss_pred             ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC---chhhhhh-eeEEEccccccc
Confidence            357899999999999999999999999999999999999874   789999999653   2344554 499999999999


Q ss_pred             cc-cHHHHhhcCC----CC-----CCHHHHHHHHHHhcccc----------------------------------ccccC
Q psy10472         84 AT-SVRENIRYGD----SS-----VSDEQIEEAAKLANAHG----------------------------------FISEF  119 (181)
Q Consensus        84 ~~-tv~enl~~~~----~~-----~~~~~~~~~~~~~~~~~----------------------------------~~~~~  119 (181)
                      +. ||+|++.|..    +.     ...++++++++.+++..                                  +..|+
T Consensus       117 ~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDE  196 (613)
T KOG0061|consen  117 PTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDE  196 (613)
T ss_pred             ccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecC
Confidence            86 9999998752    11     12345566666665442                                  35577


Q ss_pred             CCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchh-h-hcCCeEEEEeCCeEEeecCCch
Q psy10472        120 PSGALDNESEKLVQAALESAC-KGRTVLMIAHRLST-V-QNADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       120 P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~-~-~~~d~v~~l~~G~i~~~~~~~~  177 (181)
                      ||++||..++.++.+.|++++ +|+|||++-|.+.. + ...|++++|.+|+++. .|+++
T Consensus       197 PTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy-~G~~~  256 (613)
T KOG0061|consen  197 PTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVY-SGSPR  256 (613)
T ss_pred             CCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEE-ecCHH
Confidence            999999999999999999875 59999999999964 3 5599999999999987 45443

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.95  E-value=1.1e-27  Score=205.99  Aligned_cols=158  Identities=25%  Similarity=0.362  Sum_probs=124.9

Q ss_pred             ccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc
Q psy10472          5 LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA   84 (181)
Q Consensus         5 ~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~   84 (181)
                      ..+.+++|+++||+|.+|+++||||+||||||||||+|+|...|++|+|.+.+-            .+++|++|++.+.+
T Consensus        12 ~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~------------~~v~~l~Q~~~~~~   79 (530)
T COG0488          12 AYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG------------LRVGYLSQEPPLDP   79 (530)
T ss_pred             eeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC------------ceEEEeCCCCCcCC
Confidence            345678999999999999999999999999999999999999999999987651            13999999999887


Q ss_pred             c-cHHHHhhcCCCCCC------------------------------------HHHHHHHHHHhcc---------------
Q psy10472         85 T-SVRENIRYGDSSVS------------------------------------DEQIEEAAKLANA---------------  112 (181)
Q Consensus        85 ~-tv~enl~~~~~~~~------------------------------------~~~~~~~~~~~~~---------------  112 (181)
                      . ||.+.+..+.....                                    +.++..++.-+++               
T Consensus        80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r  159 (530)
T COG0488          80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWR  159 (530)
T ss_pred             CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHH
Confidence            5 99988766531100                                    0111222221211               


Q ss_pred             -------------ccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        113 -------------HGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       113 -------------~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                                   +-++.|+||+.||.++...+.+.|..+. | |+|+||||-.++.. |++|+.++.|++..+.+..
T Consensus       160 ~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny  235 (530)
T COG0488         160 RRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNY  235 (530)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCH
Confidence                         1146688999999999999999998654 5 99999999999976 9999999999998766643

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.1e-26  Score=171.67  Aligned_cols=164  Identities=23%  Similarity=0.340  Sum_probs=121.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC-----EECCCCChhhh---ccCcEEEEccCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG-----VDLKHLDGTWL---RGNVIGLINQEP   80 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g-----~~i~~~~~~~~---r~~~i~~v~q~~   80 (181)
                      ..-.++|||++.|||+.+|+|+|||||||||+||++-+.|+.|+|.+.-     .++..++..+.   .+..-|+|.|+|
T Consensus        19 ~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP   98 (258)
T COG4107          19 GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNP   98 (258)
T ss_pred             CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCc
Confidence            4467899999999999999999999999999999999999999998864     23444443321   122379999998


Q ss_pred             C--Cc----cc-cHHHHhh-cCCCCC--CHHHHHHHHHHhcccc------------------------------ccccCC
Q psy10472         81 V--LF----AT-SVRENIR-YGDSSV--SDEQIEEAAKLANAHG------------------------------FISEFP  120 (181)
Q Consensus        81 ~--l~----~~-tv~enl~-~~~~~~--~~~~~~~~~~~~~~~~------------------------------~~~~~P  120 (181)
                      .  +-    .+ +|-|-++ .+.+.+  -.+...++++.+++..                              ...++|
T Consensus        99 ~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEP  178 (258)
T COG4107          99 RDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEP  178 (258)
T ss_pred             cccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCC
Confidence            3  21    12 4444433 222211  1233344444443221                              245679


Q ss_pred             CCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        121 SGALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       121 ~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      |++||..-+..++++++.+. + +.++++||||+..+.. +||.++|++|++++.
T Consensus       179 TGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~  233 (258)
T COG4107         179 TGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES  233 (258)
T ss_pred             CCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence            99999999999999998864 3 8999999999999977 999999999999983

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.93  E-value=2e-25  Score=192.08  Aligned_cols=154  Identities=27%  Similarity=0.366  Sum_probs=121.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC-CCccc-c
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP-VLFAT-S   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~-~l~~~-t   86 (181)
                      +.+++++||.|.+|+.++|+||||+|||||||+|+|...|.+|+|.+.-.            -.+||..|+. .+++. |
T Consensus       335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~------------v~igyf~Q~~~~l~~~~t  402 (530)
T COG0488         335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET------------VKIGYFDQHRDELDPDKT  402 (530)
T ss_pred             ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc------------eEEEEEEehhhhcCccCc
Confidence            57999999999999999999999999999999999999999999987531            1399999987 44444 8


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHhccc------------------------------cccccCCCCCCCHHHHHHHHHHH
Q psy10472         87 VRENIRYGDSSVSDEQIEEAAKLANAH------------------------------GFISEFPSGALDNESEKLVQAAL  136 (181)
Q Consensus        87 v~enl~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~P~~~LD~~~~~~i~~~l  136 (181)
                      +.|++.-..+......+...+..+++.                              -++.|+||+.||.++.+.+.+.|
T Consensus       403 ~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL  482 (530)
T COG0488         403 VLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL  482 (530)
T ss_pred             HHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            998887543222233444444333221                              25678999999999999999999


Q ss_pred             HHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        137 ESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       137 ~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      ..+.  -|||+||||..++.. |++++.+++ ++....+...
T Consensus       483 ~~f~--Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~  521 (530)
T COG0488         483 LDFE--GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYE  521 (530)
T ss_pred             HhCC--CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHH
Confidence            8874  699999999999977 999999998 6666445443

>PLN03073 ABC transporter F family; Provisional

Probab=99.93  E-value=2e-26  Score=205.18  Aligned_cols=165  Identities=15%  Similarity=0.177  Sum_probs=112.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC---CCCcceEEECCEECCCCC--h-----------hhhccCc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY---DVSSGNITISGVDLKHLD--G-----------TWLRGNV   72 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~---~p~~G~i~i~g~~i~~~~--~-----------~~~r~~~   72 (181)
                      +++|+|+||+|++|++++|+||||||||||||+|+|..   .|++|+|.+.++++....  .           ....+..
T Consensus       190 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~  269 (718)
T PLN03073        190 RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEE  269 (718)
T ss_pred             CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHH
Confidence            56999999999999999999999999999999999864   688999987665432111  0           0111223


Q ss_pred             EEEEccCCCCccccHHHHhhcCC------------------------CCCCHHHHHHHHHHhcc----------------
Q psy10472         73 IGLINQEPVLFATSVRENIRYGD------------------------SSVSDEQIEEAAKLANA----------------  112 (181)
Q Consensus        73 i~~v~q~~~l~~~tv~enl~~~~------------------------~~~~~~~~~~~~~~~~~----------------  112 (181)
                      ++|++|++.+...++.+|.....                        ......++..++..+++                
T Consensus       270 ~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~  349 (718)
T PLN03073        270 AQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGW  349 (718)
T ss_pred             HHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHH
Confidence            67778765432211111111000                        00001122222322222                


Q ss_pred             --------------ccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472        113 --------------HGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ  175 (181)
Q Consensus       113 --------------~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~  175 (181)
                                    .-++.|+||++||+.++..+.+.|+.+  +.|+|+||||.+++.. ||++++|++|++..+.++
T Consensus       350 k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i~~l~~g~i~~~~g~  425 (718)
T PLN03073        350 RMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGD  425 (718)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCC
Confidence                          224678899999999999999999876  6899999999999976 999999999999754444

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.93  E-value=3.8e-26  Score=168.89  Aligned_cols=163  Identities=23%  Similarity=0.376  Sum_probs=129.4

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC-CCccccHHH
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP-VLFATSVRE   89 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~-~l~~~tv~e   89 (181)
                      =|-.+|.++..||++-++|||||||||||-.++|+. |.+|+|.++|.++...+..++.++ -+|+.|+. ..|.+.|..
T Consensus        14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArh-RAYLsQqq~p~f~mpV~~   91 (248)
T COG4138          14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARH-RAYLSQQQTPPFAMPVWH   91 (248)
T ss_pred             cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHH-HHHHhhccCCcchhhhhh
Confidence            466789999999999999999999999999999986 679999999999988777666655 37887765 456678999


Q ss_pred             HhhcCCCCCC-HHHHHHHHHHhcccc------------------------------------ccccCCCCCCCHHHHHHH
Q psy10472         90 NIRYGDSSVS-DEQIEEAAKLANAHG------------------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        90 nl~~~~~~~~-~~~~~~~~~~~~~~~------------------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      .+.+..+... ...+.++...+++.+                                    ++-|+|.++||...+..+
T Consensus        92 YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL  171 (248)
T COG4138          92 YLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL  171 (248)
T ss_pred             hhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH
Confidence            9988654321 223444444444332                                    345779999999999999


Q ss_pred             HHHHHHhc-CCcEEEEEecCchhh-hcCCeEEEEeCCeEEeecCCc
Q psy10472        133 QAALESAC-KGRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       133 ~~~l~~~~-~~~tii~vtHd~~~~-~~~d~v~~l~~G~i~~~~~~~  176 (181)
                      ..++..++ .|.+|||.+||++.- ..||+++.++.|++.. .+..
T Consensus       172 drll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~-~G~~  216 (248)
T COG4138         172 DRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLA-SGRR  216 (248)
T ss_pred             HHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEe-ecch
Confidence            99998876 599999999999876 5599999999999987 3433

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.93  E-value=3.7e-26  Score=186.62  Aligned_cols=156  Identities=24%  Similarity=0.306  Sum_probs=121.1

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH-HH
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV-RE   89 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv-~e   89 (181)
                      -+..||++|++||++.|+|.||||||||++++.|+++|++|+|++||+++..-+..++|+- ++-||.|.++|+.++ .|
T Consensus       338 hvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~L-fSavFsDyhLF~~ll~~e  416 (546)
T COG4615         338 HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKL-FSAVFSDYHLFDQLLGPE  416 (546)
T ss_pred             eecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHH-HHHHhhhHhhhHhhhCCc
Confidence            3678999999999999999999999999999999999999999999999998888888864 888999998887533 12


Q ss_pred             HhhcCCCCCCHHHHHHHHH---------------------------------Hhcccc-ccccCCCCCCCHHHHHHHHHH
Q psy10472         90 NIRYGDSSVSDEQIEEAAK---------------------------------LANAHG-FISEFPSGALDNESEKLVQAA  135 (181)
Q Consensus        90 nl~~~~~~~~~~~~~~~~~---------------------------------~~~~~~-~~~~~P~~~LD~~~~~~i~~~  135 (181)
                      +-      .+.+.++..++                                 .++..+ +..|+=.+.-||.-++.++..
T Consensus       417 ~~------as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~  490 (546)
T COG4615         417 GK------ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV  490 (546)
T ss_pred             cC------CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHH
Confidence            21      11222222222                                 222111 223333467899999999887


Q ss_pred             HH-Hhc-CCcEEEEEecCchhhhcCCeEEEEeCCeEEeec
Q psy10472        136 LE-SAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEML  173 (181)
Q Consensus       136 l~-~~~-~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~  173 (181)
                      +- .++ .|+||+.||||......|||++.+++|++++..
T Consensus       491 lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t  530 (546)
T COG4615         491 LLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT  530 (546)
T ss_pred             HhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence            64 344 599999999999999999999999999999843

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.2e-25  Score=165.44  Aligned_cols=157  Identities=23%  Similarity=0.304  Sum_probs=116.2

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCE----ECCCCChh---hhccCcEEEEccCCCC
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGV----DLKHLDGT---WLRGNVIGLINQEPVL   82 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~----~i~~~~~~---~~r~~~i~~v~q~~~l   82 (181)
                      ++++++||+++.|||+++-||||||||||||+|.+-|.|++|+|.+.-.    ++....+.   ..|++.||||+|.-..
T Consensus        25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRv  104 (235)
T COG4778          25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRV  104 (235)
T ss_pred             eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHh
Confidence            6899999999999999999999999999999999999999999988543    22222222   3566679999997655


Q ss_pred             ccc-cHHHHhhcCC--CCCC----HHHHHHHHHHhccc------------------------------cccccCCCCCCC
Q psy10472         83 FAT-SVRENIRYGD--SSVS----DEQIEEAAKLANAH------------------------------GFISEFPSGALD  125 (181)
Q Consensus        83 ~~~-tv~enl~~~~--~~~~----~~~~~~~~~~~~~~------------------------------~~~~~~P~~~LD  125 (181)
                      .|. +..|-++.+.  ....    ..+....+..+++.                              -++.|+||++||
T Consensus       105 iPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLD  184 (235)
T COG4778         105 IPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD  184 (235)
T ss_pred             ccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCccccc
Confidence            554 4444444321  0111    12223333333221                              145678999999


Q ss_pred             HHHHHHHHHHHHHh-cCCcEEEEEecCchhhhc-CCeEEEEeC
Q psy10472        126 NESEKLVQAALESA-CKGRTVLMIAHRLSTVQN-ADLIVVLQA  166 (181)
Q Consensus       126 ~~~~~~i~~~l~~~-~~~~tii~vtHd~~~~~~-~d~v~~l~~  166 (181)
                      ..+++.+.++|.+. ++|+++|=|-||-+.-+. |||++.+..
T Consensus       185 a~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~  227 (235)
T COG4778         185 ATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA  227 (235)
T ss_pred             ccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence            99999999999875 469999999999988766 999988754

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.92  E-value=2.3e-24  Score=165.17  Aligned_cols=149  Identities=21%  Similarity=0.216  Sum_probs=107.5

Q ss_pred             ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc---------ceEEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472         13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS---------GNITISGVDLKHLDGTWLRGNVIGLINQEPVLF   83 (181)
Q Consensus        13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~---------G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~   83 (181)
                      +++++++.+| +++|+||||||||||+++|+|+.+|..         |++.+.|++....   ..+ +.++|+||++..+
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~v~~vfq~~~~~   88 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANF-AEVTLTFDNSDGR   88 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---Cce-EEEEEEEEcCCCc
Confidence            7789999999 999999999999999999999987653         4677777665321   122 3599999998764


Q ss_pred             c-----ccHHHHhhcCCC------CCC---HHHHHHHHHHh----cc-ccccccCCCCCCCHHHHHHHHHHHHHhcCCcE
Q psy10472         84 A-----TSVRENIRYGDS------SVS---DEQIEEAAKLA----NA-HGFISEFPSGALDNESEKLVQAALESACKGRT  144 (181)
Q Consensus        84 ~-----~tv~enl~~~~~------~~~---~~~~~~~~~~~----~~-~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~t  144 (181)
                      .     ..+.+-+.....      ..+   ++++.-+...+    .- .-++.|+|+++||+..+..+.+.++++.++.|
T Consensus        89 ~~~~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~t  168 (197)
T cd03278          89 YSIISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQ  168 (197)
T ss_pred             eeEEehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCE
Confidence            1     124444433210      011   11221111111    22 34678999999999999999999998766899


Q ss_pred             EEEEecCchhhhcCCeEEEEeC
Q psy10472        145 VLMIAHRLSTVQNADLIVVLQA  166 (181)
Q Consensus       145 ii~vtHd~~~~~~~d~v~~l~~  166 (181)
                      ||++||+++.+..||+++.+..
T Consensus       169 iIiitH~~~~~~~~d~v~~~~~  190 (197)
T cd03278         169 FIVITHRKGTMEAADRLYGVTM  190 (197)
T ss_pred             EEEEECCHHHHhhcceEEEEEe
Confidence            9999999998877999999864

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.91  E-value=1.7e-23  Score=163.63  Aligned_cols=58  Identities=26%  Similarity=0.405  Sum_probs=52.5

Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEe
Q psy10472        114 GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVE  171 (181)
Q Consensus       114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~  171 (181)
                      -++.|+|+++||+.++..+.+.++++. +|.|+|+||||++.+..||++++|      ++|+|++
T Consensus       160 llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~  224 (226)
T cd03270         160 LYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVA  224 (226)
T ss_pred             EEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEe
Confidence            466789999999999999999998764 589999999999988779999999      9999987

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.90  E-value=1.6e-23  Score=151.07  Aligned_cols=115  Identities=37%  Similarity=0.555  Sum_probs=93.4

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHH
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVREN   90 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~en   90 (181)
                      |+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+....++. ++|++|++.+++. |+.+|
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~tv~~~   79 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRR-IGYVPQDPQLFPGLTVREN   79 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHT-EEEEESSHCHHTTSBHHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            689999999999999999999999999999999999999999999999987555555554 9999999988876 89999


Q ss_pred             hhcCCCCCCHHHHHHHHHHhccccccccC---CCCCCCHHHHHHHHH
Q psy10472         91 IRYGDSSVSDEQIEEAAKLANAHGFISEF---PSGALDNESEKLVQA  134 (181)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---P~~~LD~~~~~~i~~  134 (181)
                             ...++++++++.+++..+....   +...|..-.++.+.=
T Consensus        80 -------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~l  119 (137)
T PF00005_consen   80 -------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLAL  119 (137)
T ss_dssp             -------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHH
T ss_pred             -------cccccccccccccccccccccccccccchhhHHHHHHHHH
Confidence                   2345677888888776644332   346777766665543

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.89  E-value=1.2e-22  Score=161.43  Aligned_cols=163  Identities=23%  Similarity=0.304  Sum_probs=108.9

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHh-----c-CC----CCCcc-----------eEEECCEECCCCCh---
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLE-----R-FY----DVSSG-----------NITISGVDLKHLDG---   65 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~-----g-l~----~p~~G-----------~i~i~g~~i~~~~~---   65 (181)
                      .-|+|||++|+.|.+++|+|+||||||||++.+.     . +.    .|..+           -|.++..++..-+.   
T Consensus         9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~   88 (261)
T cd03271           9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP   88 (261)
T ss_pred             hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence            3699999999999999999999999999999663     1 11    12211           35666666543211   


Q ss_pred             h-------hhcc---------------CcEEEEccCCCCc-cccHHHHhhcCCCCCCHHHHHHHH---------------
Q psy10472         66 T-------WLRG---------------NVIGLINQEPVLF-ATSVRENIRYGDSSVSDEQIEEAA---------------  107 (181)
Q Consensus        66 ~-------~~r~---------------~~i~~v~q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~---------------  107 (181)
                      .       .+|.               ..+.|..++...+ ..|+.|++.|........+..+++               
T Consensus        89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~  168 (261)
T cd03271          89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPAT  168 (261)
T ss_pred             HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccc
Confidence            0       0110               0134444544433 458888886542111111111111               


Q ss_pred             --------------HHhc----cccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE----
Q psy10472        108 --------------KLAN----AHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL----  164 (181)
Q Consensus       108 --------------~~~~----~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l----  164 (181)
                                    ..+.    ..-++.|+|+++||+...+.+.+.++++. +|.|+|+|||+++++..||+++.|    
T Consensus       169 ~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~ii~Lgp~~  248 (261)
T cd03271         169 TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIIDLGPEG  248 (261)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCc
Confidence                          1221    13456788999999999999999998865 589999999999998789999999    


Q ss_pred             --eCCeEEee
Q psy10472        165 --QAGQIVEM  172 (181)
Q Consensus       165 --~~G~i~~~  172 (181)
                        ++|++++.
T Consensus       249 g~~~G~iv~~  258 (261)
T cd03271         249 GDGGGQVVAS  258 (261)
T ss_pred             CCCCCEEEEe
Confidence              89999873

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.89  E-value=3.9e-22  Score=168.97  Aligned_cols=162  Identities=21%  Similarity=0.306  Sum_probs=130.8

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC---CCcc-cc
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP---VLFA-TS   86 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~---~l~~-~t   86 (181)
                      .++|+||++.+||+++|.|--|||+|-|+++|.|..++.+|+|.++|+++.-.++.+.-+..|+|||.+-   .++. .+
T Consensus       274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s  353 (500)
T COG1129         274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS  353 (500)
T ss_pred             ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence            4789999999999999999999999999999999999999999999999887776654445799999975   5665 59


Q ss_pred             HHHHhhcCCC-------CCCHH----HHHHHHHHhc------------------------------cccccccCCCCCCC
Q psy10472         87 VRENIRYGDS-------SVSDE----QIEEAAKLAN------------------------------AHGFISEFPSGALD  125 (181)
Q Consensus        87 v~enl~~~~~-------~~~~~----~~~~~~~~~~------------------------------~~~~~~~~P~~~LD  125 (181)
                      |.+|+.++..       ..+..    ..++..+.++                              ..-++.|+||-++|
T Consensus       354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID  433 (500)
T COG1129         354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID  433 (500)
T ss_pred             HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence            9999977510       11111    1222222222                              12256788999999


Q ss_pred             HHHHHHHHHHHHHhc-CCcEEEEEecCchhhh-cCCeEEEEeCCeEEee
Q psy10472        126 NESEKLVQAALESAC-KGRTVLMIAHRLSTVQ-NADLIVVLQAGQIVEM  172 (181)
Q Consensus       126 ~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~-~~d~v~~l~~G~i~~~  172 (181)
                      .-++.++++++++++ +|++||++|-++.++. .||||++|++|+++..
T Consensus       434 VGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e  482 (500)
T COG1129         434 VGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE  482 (500)
T ss_pred             cchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEE
Confidence            999999999999875 6999999999999886 5999999999999864

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.87  E-value=1.5e-21  Score=150.38  Aligned_cols=151  Identities=18%  Similarity=0.190  Sum_probs=106.0

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHh----cCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC-----CC
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLE----RFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP-----VL   82 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~----gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~-----~l   82 (181)
                      ....++++.+| +++|+|||||||||||++|.    |...|..|.+..+...+.. .  .. +..++++||++     ..
T Consensus        13 ~~~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~-~--~~-~~~v~~~f~~~~~~~~~v   87 (204)
T cd03240          13 HERSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE-G--EV-RAQVKLAFENANGKKYTI   87 (204)
T ss_pred             cCceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC-C--CC-cEEEEEEEEeCCCCEEEE
Confidence            34456778888 99999999999999999994    9989988877622222221 1  11 23499999987     33


Q ss_pred             cc-ccHHHHhhcCCCC------------CC--H-HHHH-----HHHHH--hccccccccCCCCCCCHHHHH-HHHHHHHH
Q psy10472         83 FA-TSVRENIRYGDSS------------VS--D-EQIE-----EAAKL--ANAHGFISEFPSGALDNESEK-LVQAALES  138 (181)
Q Consensus        83 ~~-~tv~enl~~~~~~------------~~--~-~~~~-----~~~~~--~~~~~~~~~~P~~~LD~~~~~-~i~~~l~~  138 (181)
                      .. .|+.+|+.+....            .+  . +++.     .+++.  ....-++.|+|+++||+..+. .+.+++.+
T Consensus        88 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~  167 (204)
T cd03240          88 TRSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEE  167 (204)
T ss_pred             EEEhhHhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence            33 3899999765210            00  1 1110     11111  123446789999999999999 99999988


Q ss_pred             hcC--CcEEEEEecCchhhhcCCeEEEEeCC
Q psy10472        139 ACK--GRTVLMIAHRLSTVQNADLIVVLQAG  167 (181)
Q Consensus       139 ~~~--~~tii~vtHd~~~~~~~d~v~~l~~G  167 (181)
                      +.+  +.|+|++||+++.+..||+++.|++.
T Consensus       168 ~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~  198 (204)
T cd03240         168 RKSQKNFQLIVITHDEELVDAADHIYRVEKD  198 (204)
T ss_pred             HHhccCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence            753  78999999999988779999999653

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.87  E-value=6.4e-22  Score=156.85  Aligned_cols=147  Identities=16%  Similarity=0.260  Sum_probs=102.0

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-cceEEECCE-ECCCCCh-hhhccCcEEEEccCCC---------Ccc-
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-SGNITISGV-DLKHLDG-TWLRGNVIGLINQEPV---------LFA-   84 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-~G~i~i~g~-~i~~~~~-~~~r~~~i~~v~q~~~---------l~~-   84 (181)
                      .+.+ .+++|+||||||||||+++|++++.|. .|++.+.+. ++..... ...+...++++||++.         +.+ 
T Consensus        22 ~~~~-~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~  100 (251)
T cd03273          22 GFDP-QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPE  100 (251)
T ss_pred             cCCC-CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCce
Confidence            4444 499999999999999999999999886 468888776 3322111 1123335999999852         223 


Q ss_pred             ccHHHHhhcCCC--------CCCHHHHHHHHHHhcc--------------------------------------------
Q psy10472         85 TSVRENIRYGDS--------SVSDEQIEEAAKLANA--------------------------------------------  112 (181)
Q Consensus        85 ~tv~enl~~~~~--------~~~~~~~~~~~~~~~~--------------------------------------------  112 (181)
                      .||.+|+.++..        ....+++.++++.+++                                            
T Consensus       101 ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~a  180 (251)
T cd03273         101 ITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLI  180 (251)
T ss_pred             EEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHH
Confidence            366666644311        0112233333333332                                            


Q ss_pred             ---------ccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEe
Q psy10472        113 ---------HGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ  165 (181)
Q Consensus       113 ---------~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~  165 (181)
                               .-++.|+|+++||+..++.+.+.++++.+|.|+|+|||+.+....||+++-+.
T Consensus       181 l~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~  242 (251)
T cd03273         181 LALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR  242 (251)
T ss_pred             HHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence                     12345779999999999999999988777899999999987777899998875

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0065|consensus

Probab=99.87  E-value=5.1e-22  Score=181.05  Aligned_cols=161  Identities=27%  Similarity=0.412  Sum_probs=127.9

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC--CCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD--VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA   84 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~--p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~   84 (181)
                      +.+++|+||+=-++||-.+||+|+|||||||||++|+|-..  ..+|+|.++|.+..+   ..+++ .+|||.|+..-.+
T Consensus       802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R-~~GYvqQ~DiH~~  877 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFAR-VSGYVEQQDIHSP  877 (1391)
T ss_pred             cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhcc-ccceeecccccCc
Confidence            34679999999999999999999999999999999999743  347999999987643   33444 4999999886666


Q ss_pred             c-cHHHHhhcCC-----CCCC---H-HHHHHHHHHhcccc----------------------------------ccccCC
Q psy10472         85 T-SVRENIRYGD-----SSVS---D-EQIEEAAKLANAHG----------------------------------FISEFP  120 (181)
Q Consensus        85 ~-tv~enl~~~~-----~~~~---~-~~~~~~~~~~~~~~----------------------------------~~~~~P  120 (181)
                      . ||+|-|.|..     ...+   + +.++++++.+++..                                  +..|+|
T Consensus       878 ~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEP  957 (1391)
T KOG0065|consen  878 ELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEP  957 (1391)
T ss_pred             ccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCC
Confidence            4 9999998852     1111   2 44677777766543                                  235779


Q ss_pred             CCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhh--hcCCeEEEEeC-CeEEe
Q psy10472        121 SGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTV--QNADLIVVLQA-GQIVE  171 (181)
Q Consensus       121 ~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~--~~~d~v~~l~~-G~i~~  171 (181)
                      |+|||.+++-.+++.+++++ .|.||+.+-|.++.-  +..|++++|++ |+.+.
T Consensus       958 TSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY 1012 (1391)
T KOG0065|consen  958 TSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVY 1012 (1391)
T ss_pred             CCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEE
Confidence            99999999999999999876 599999999999753  56999999975 56665

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.86  E-value=3.9e-21  Score=165.89  Aligned_cols=145  Identities=23%  Similarity=0.390  Sum_probs=122.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      ...+++.||+|++||.+.|.||||||||||+|+|+|+.|.-+|+|.+-.            ...+-|+||.|++..+|.+
T Consensus       406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~------------~~~~lflpQ~PY~p~GtLr  473 (604)
T COG4178         406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA------------DSALLFLPQRPYLPQGTLR  473 (604)
T ss_pred             CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC------------CCceEEecCCCCCCCccHH
Confidence            4689999999999999999999999999999999999999999886531            1237899999999999999


Q ss_pred             HHhhcCCCC--CCHHHHHHHHHHhccccc-----------------------------------cccCCCCCCCHHHHHH
Q psy10472         89 ENIRYGDSS--VSDEQIEEAAKLANAHGF-----------------------------------ISEFPSGALDNESEKL  131 (181)
Q Consensus        89 enl~~~~~~--~~~~~~~~~~~~~~~~~~-----------------------------------~~~~P~~~LD~~~~~~  131 (181)
                      |-|.++...  .+++++.+++..+++.++                                   ..|+.|++||++++..
T Consensus       474 e~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~  553 (604)
T COG4178         474 EALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDR  553 (604)
T ss_pred             HHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHH
Confidence            999998644  577888888888776553                                   2344789999999999


Q ss_pred             HHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEe
Q psy10472        132 VQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ  165 (181)
Q Consensus       132 i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~  165 (181)
                      +++++++...+.|+|.|+|........++.+.+.
T Consensus       554 l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~  587 (604)
T COG4178         554 LYQLLKEELPDATVISVGHRPTLWNFHSRQLELL  587 (604)
T ss_pred             HHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence            9999998778999999999998877656555554

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.85  E-value=4e-20  Score=154.79  Aligned_cols=163  Identities=26%  Similarity=0.411  Sum_probs=131.5

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEEC-CCCChhhhccCcEEEEccCC---CCc-c
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL-KHLDGTWLRGNVIGLINQEP---VLF-A   84 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i-~~~~~~~~r~~~i~~v~q~~---~l~-~   84 (181)
                      ..+++|||+|.+||+++|.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+++ ...+...+++..++|||.+.   .+. .
T Consensus       272 ~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~  351 (501)
T COG3845         272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLD  351 (501)
T ss_pred             ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccC
Confidence            568999999999999999999999999999999999999999999999997 66677777777899999986   344 4


Q ss_pred             ccHHHHhhcCCCC---------CCHHHH----HHHHHHhccc------------------------------cccccCCC
Q psy10472         85 TSVRENIRYGDSS---------VSDEQI----EEAAKLANAH------------------------------GFISEFPS  121 (181)
Q Consensus        85 ~tv~enl~~~~~~---------~~~~~~----~~~~~~~~~~------------------------------~~~~~~P~  121 (181)
                      .|+.||+.+....         .+...+    .+..+.++..                              -++...||
T Consensus       352 ~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPT  431 (501)
T COG3845         352 LSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPT  431 (501)
T ss_pred             ccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCC
Confidence            6999999875321         112222    2333333221                              02344599


Q ss_pred             CCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      .+||..+.+.+.+.|.+.+ +|++|+++|-|++++.. ||||.+|.+|+++..
T Consensus       432 rGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~  484 (501)
T COG3845         432 RGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI  484 (501)
T ss_pred             ccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence            9999999999999988765 69999999999999865 999999999999863

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.85  E-value=9.3e-21  Score=146.81  Aligned_cols=155  Identities=18%  Similarity=0.092  Sum_probs=98.2

Q ss_pred             ceeeEEec-CCcEEEEECCCCCcHHHHHHHHhc-CCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc------c
Q psy10472         13 KDFNLRIP-AGQKVAIVGSSGNGKSTIVALLER-FYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF------A   84 (181)
Q Consensus        13 ~~isl~i~-~Ge~~~liG~nGsGKSTLl~~l~g-l~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~------~   84 (181)
                      .+++|+.. +|++++|+||||||||||+++|++ ++-+..+....+ .....+...... ..|+++||++...      .
T Consensus        18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~-~~v~~~f~~~~~~~~~~r~~   95 (213)
T cd03279          18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDT-AEVSFTFQLGGKKYRVERSR   95 (213)
T ss_pred             eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCcc-EEEEEEEEECCeEEEEEEec
Confidence            45666544 488999999999999999999995 444444444432 111111111222 2489999986431      1


Q ss_pred             -ccHHHHhh-----cC------CC---CCC---HHHHHHHHHHh-----------ccccccccCCCCCCCHHHHHHHHHH
Q psy10472         85 -TSVRENIR-----YG------DS---SVS---DEQIEEAAKLA-----------NAHGFISEFPSGALDNESEKLVQAA  135 (181)
Q Consensus        85 -~tv~enl~-----~~------~~---~~~---~~~~~~~~~~~-----------~~~~~~~~~P~~~LD~~~~~~i~~~  135 (181)
                       .+..+...     .+      ..   ..+   .+++.-+...+           ...-++.|+|+++||+.+...+.+.
T Consensus        96 gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~  175 (213)
T cd03279          96 GLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATA  175 (213)
T ss_pred             CCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence             12222211     01      00   011   11211111111           1234778999999999999999999


Q ss_pred             HHHhcC-CcEEEEEecCchhhhc-CCeEEEEeCCeE
Q psy10472        136 LESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQI  169 (181)
Q Consensus       136 l~~~~~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i  169 (181)
                      +.++.+ +.|+|+|||+++.+.. ||+++++++|.+
T Consensus       176 l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~  211 (213)
T cd03279         176 LELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG  211 (213)
T ss_pred             HHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence            988754 8999999999998876 999999998853

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.85  E-value=1e-20  Score=148.96  Aligned_cols=149  Identities=22%  Similarity=0.320  Sum_probs=98.1

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHh----------------cCCCCCcc--------eEEECCEECC-CC-
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLE----------------RFYDVSSG--------NITISGVDLK-HL-   63 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~----------------gl~~p~~G--------~i~i~g~~i~-~~-   63 (181)
                      .++.+++     |++++|+||||||||||+++|+                +++.+.+|        +|.+++.+-. .. 
T Consensus        16 ~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~   90 (243)
T cd03272          16 TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPID   90 (243)
T ss_pred             cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCC
Confidence            3555554     7899999999999999999998                44555566        6666553210 11 


Q ss_pred             -ChhhhccCcEEEEccCCCCccc--cHHHHhhc----CCCC----------------------------CC---HHHHHH
Q psy10472         64 -DGTWLRGNVIGLINQEPVLFAT--SVRENIRY----GDSS----------------------------VS---DEQIEE  105 (181)
Q Consensus        64 -~~~~~r~~~i~~v~q~~~l~~~--tv~enl~~----~~~~----------------------------~~---~~~~~~  105 (181)
                       .....++ .+++++|++.+++.  |..+...+    +...                            .+   ++++ .
T Consensus        91 ~~~~~i~r-~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~-~  168 (243)
T cd03272          91 KEEVRLRR-TIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLV-A  168 (243)
T ss_pred             CCEEEEEE-EEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHH-H
Confidence             1112333 38999998877652  55443221    1000                            00   1111 1


Q ss_pred             HHHHh-----c-cccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEe
Q psy10472        106 AAKLA-----N-AHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ  165 (181)
Q Consensus       106 ~~~~~-----~-~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~  165 (181)
                      +...+     . ..-++.|+|+++||+.+++.+++.++++.+++++|++||+.+....||++++|.
T Consensus       169 la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~~l~  234 (243)
T cd03272         169 LALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFYGVK  234 (243)
T ss_pred             HHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence            11222     1 245678999999999999999999988766889999999977666699999985

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.84  E-value=1.9e-20  Score=142.60  Aligned_cols=163  Identities=23%  Similarity=0.310  Sum_probs=124.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC----CcceEEECCEECCCCChhhhcc---CcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV----SSGNITISGVDLKHLDGTWLRG---NVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p----~~G~i~i~g~~i~~~~~~~~r~---~~i~~v~q~~~   81 (181)
                      ..+++++|+++++||+-+++|.||||||-..|.|+|..+-    +.-+..+++.++.++++.+.|+   +.|+++||+|.
T Consensus        20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~   99 (330)
T COG4170          20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ   99 (330)
T ss_pred             eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence            3589999999999999999999999999999999999764    4566778888888887765442   34889999995


Q ss_pred             C--cc-ccHH----HHhhcCCC--------CCCHHHHHHHHHHhcccc--------------------------------
Q psy10472         82 L--FA-TSVR----ENIRYGDS--------SVSDEQIEEAAKLANAHG--------------------------------  114 (181)
Q Consensus        82 l--~~-~tv~----enl~~~~~--------~~~~~~~~~~~~~~~~~~--------------------------------  114 (181)
                      -  -+ .+|.    +||-+...        ...+.+..+.+..+|..+                                
T Consensus       100 sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrL  179 (330)
T COG4170         100 SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRL  179 (330)
T ss_pred             hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCce
Confidence            3  33 2543    44432110        112333444555554432                                


Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        115 FISEFPSGALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       115 ~~~~~P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      ++.++||+++|+.++.+++.++..+.  +|+||++++||+..+.. ||++-+|.-|+-++
T Consensus       180 LIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~E  239 (330)
T COG4170         180 LIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVE  239 (330)
T ss_pred             EeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccccc
Confidence            46788999999999999999998865  48999999999999965 99999999998777

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.82  E-value=1.2e-20  Score=144.84  Aligned_cols=132  Identities=17%  Similarity=0.196  Sum_probs=93.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +.++++++|+  .|++++|+||||||||||+|+|+|...     +.+.|.++..          -.+++|...+|.. |+
T Consensus        14 ~~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a----------~~~~~q~~~l~~~~~~   76 (199)
T cd03283          14 KRVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA----------SSFELPPVKIFTSIRV   76 (199)
T ss_pred             CeecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec----------CccCcccceEEEeccc
Confidence            3466777655  579999999999999999999988543     2235544321          1356675567765 99


Q ss_pred             HHHhhcCCCCC--CHHHHHHHHHHhc---cccccccCCCCCCCHHHHHHHH-HHHHHhc-CCcEEEEEecCchhhhc
Q psy10472         88 RENIRYGDSSV--SDEQIEEAAKLAN---AHGFISEFPSGALDNESEKLVQ-AALESAC-KGRTVLMIAHRLSTVQN  157 (181)
Q Consensus        88 ~enl~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~P~~~LD~~~~~~i~-~~l~~~~-~~~tii~vtHd~~~~~~  157 (181)
                      .||+.++....  ...++.++++.++   ..-++.|+|++++|+.....+. .+++.+. .+.++|++||+++.+..
T Consensus        77 ~d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~  153 (199)
T cd03283          77 SDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADL  153 (199)
T ss_pred             hhccccccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHh
Confidence            99998875322  1234566666666   2346689999999999887654 4566553 48999999999998753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>KOG0927|consensus

Probab=99.82  E-value=1.7e-20  Score=158.31  Aligned_cols=152  Identities=22%  Similarity=0.277  Sum_probs=118.3

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC---CCcccc
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP---VLFATS   86 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~---~l~~~t   86 (181)
                      .++++++|-|..++.+++|||||||||||||++.|.+.|..|.|.-.-+.            .+++.-|+.   ..+..+
T Consensus       404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~------------~~~~y~Qh~~e~ldl~~s  471 (614)
T KOG0927|consen  404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN------------KLPRYNQHLAEQLDLDKS  471 (614)
T ss_pred             hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc------------cchhhhhhhHhhcCcchh
Confidence            47889999999999999999999999999999999999999988644322            134444443   223447


Q ss_pred             HHHHhhcCCC-CCCHHHHHHHHHHhcccc------------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472         87 VRENIRYGDS-SVSDEQIEEAAKLANAHG------------------------------FISEFPSGALDNESEKLVQAA  135 (181)
Q Consensus        87 v~enl~~~~~-~~~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~~~~~~i~~~  135 (181)
                      ..|++.-... ....+.+..++..+++.+                              ++.|+||++||.++...+.+.
T Consensus       472 ~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laea  551 (614)
T KOG0927|consen  472 SLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEA  551 (614)
T ss_pred             HHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHH
Confidence            7777754333 245566777777776653                              356789999999999999999


Q ss_pred             HHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472        136 LESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ  175 (181)
Q Consensus       136 l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~  175 (181)
                      |..+.  .++|+||||...+.. ++++++..+|.+..+.|.
T Consensus       552 iNe~~--Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~  590 (614)
T KOG0927|consen  552 INEFP--GGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGD  590 (614)
T ss_pred             HhccC--CceeeeechhhHHHHHHHHhHhhccCceeecCcc
Confidence            98774  579999999999976 999999999988775553

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.82  E-value=5.2e-21  Score=148.18  Aligned_cols=54  Identities=19%  Similarity=0.203  Sum_probs=47.5

Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeC
Q psy10472        113 HGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA  166 (181)
Q Consensus       113 ~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~  166 (181)
                      .-++.|+|+++||+.++..+++.++++.++.|+|++||+.+....||++++|..
T Consensus       151 ~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~  204 (212)
T cd03274         151 PLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK  204 (212)
T ss_pred             CEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence            456789999999999999999999988778899999999776677999999964

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.81  E-value=4.4e-20  Score=127.45  Aligned_cols=77  Identities=22%  Similarity=0.159  Sum_probs=67.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      ..+|++++|++++|++++|+||||||||||++++.      +|++.++|.++..++....++ .+++++|+  +|+.|++
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~-~~~~~~q~--lf~~ti~   72 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDE-LIGRNPEL--GLEIRLR   72 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCC-EEEEechh--cchhhHH
Confidence            45899999999999999999999999999999986      899999999988776555443 47788887  8889999


Q ss_pred             HHhhcC
Q psy10472         89 ENIRYG   94 (181)
Q Consensus        89 enl~~~   94 (181)
                      |||.++
T Consensus        73 ~Ni~~~   78 (107)
T cd00820          73 LNIFLI   78 (107)
T ss_pred             hhceee
Confidence            999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.80  E-value=1.4e-19  Score=138.92  Aligned_cols=140  Identities=11%  Similarity=0.068  Sum_probs=92.6

Q ss_pred             cceeeEEecCCc-EEEEECCCCCcHHHHHHHHh--------cCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC
Q psy10472         12 LKDFNLRIPAGQ-KVAIVGSSGNGKSTIVALLE--------RFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL   82 (181)
Q Consensus        12 l~~isl~i~~Ge-~~~liG~nGsGKSTLl~~l~--------gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l   82 (181)
                      +-++||++.+|+ +++|+||||||||||||+|+        |.+-|....+                  .++|+.|....
T Consensus        17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~------------------~~~~~~~~~~~   78 (200)
T cd03280          17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS------------------SLPVFENIFAD   78 (200)
T ss_pred             eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc------------------cCcCccEEEEe
Confidence            447899999995 79999999999999999999        6555532211                  13333333222


Q ss_pred             cc--ccHHHHhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHH-HHHHhc-CCcEEEEEecCchhhhc
Q psy10472         83 FA--TSVRENIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQA-ALESAC-KGRTVLMIAHRLSTVQN  157 (181)
Q Consensus        83 ~~--~tv~enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~-~l~~~~-~~~tii~vtHd~~~~~~  157 (181)
                      +.  .++.+++....  ....+...++..+ +..-++.|+|++++|+..+..+.. .++.+. .+.++|++||+.+....
T Consensus        79 lg~~~~l~~~~s~fs--~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~  156 (200)
T cd03280          79 IGDEQSIEQSLSTFS--SHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAY  156 (200)
T ss_pred             cCchhhhhcCcchHH--HHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHH
Confidence            21  13333331110  1112223333322 233467899999999999888864 566654 48999999999766566


Q ss_pred             CCeEEEEeCCeEEe
Q psy10472        158 ADLIVVLQAGQIVE  171 (181)
Q Consensus       158 ~d~v~~l~~G~i~~  171 (181)
                      ||+++.|++|++..
T Consensus       157 ~d~~~~l~~g~l~~  170 (200)
T cd03280         157 AYKREGVENASMEF  170 (200)
T ss_pred             HhcCCCeEEEEEEE
Confidence            99999999999875

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.78  E-value=4.2e-18  Score=161.45  Aligned_cols=62  Identities=26%  Similarity=0.424  Sum_probs=53.0

Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEe------CCeEEeecCCch
Q psy10472        115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQ------AGQIVEMLGQHE  177 (181)
Q Consensus       115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~------~G~i~~~~~~~~  177 (181)
                      ++.|+|+++||+...+.++++|+++. +|.|||+|||+++.+..||++++|.      +|+++. .++++
T Consensus       834 LILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~-~Gtpe  902 (1809)
T PRK00635        834 YVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLA-SCSPE  902 (1809)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEE-eCCHH
Confidence            56678999999999999999998865 5899999999999996699999996      788887 34443

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.77  E-value=2.7e-18  Score=156.21  Aligned_cols=63  Identities=33%  Similarity=0.495  Sum_probs=54.6

Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEeecCCch
Q psy10472        114 GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMLGQHE  177 (181)
Q Consensus       114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~~~~~~  177 (181)
                      -++.|+|+++||+..+..+++.|+++. +|.|||+|||+++.+..||+++.|      ++|+++. .++++
T Consensus       854 llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~-~Gt~~  923 (943)
T PRK00349        854 LYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVA-TGTPE  923 (943)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEE-eCCHH
Confidence            356788999999999999999998874 589999999999998779999999      6899987 45443

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.76  E-value=4.1e-18  Score=134.79  Aligned_cols=53  Identities=19%  Similarity=0.180  Sum_probs=46.8

Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecCchhhhcCCeEEEEeC
Q psy10472        114 GFISEFPSGALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVLQA  166 (181)
Q Consensus       114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~~-~~tii~vtHd~~~~~~~d~v~~l~~  166 (181)
                      -++.|+|+++||+..+..+.+.+.++.+ |.++|+|||+.+.+..||++++|..
T Consensus       180 ~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~  233 (247)
T cd03275         180 FFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR  233 (247)
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence            4567899999999999999999998754 8999999999888877999999864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.75  E-value=9.9e-18  Score=133.95  Aligned_cols=133  Identities=19%  Similarity=0.228  Sum_probs=95.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC-hhhhccCcEEEEccCCCCccccHHHHhhcCCCCCCHH
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD-GTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDE  101 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~-~~~~r~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~  101 (181)
                      .-++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..++... ++++||+......+|.+|..      ..+
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~-~~~~~q~~~~~r~~v~~~~~------k~~  184 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGC-VNGVPQHDVGIRTDVLDGCP------KAE  184 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHH-hcccccccccccccccccch------HHH
Confidence            568999999999999999999999999999999999987543 2344443 78888865332347776631      122


Q ss_pred             HHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchh--h------------hcCCeEEEEeCC
Q psy10472        102 QIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLST--V------------QNADLIVVLQAG  167 (181)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~--~------------~~~d~v~~l~~G  167 (181)
                      .+..++......-++.|+|..      .+.+..+++.+..|.++|++||+...  +            ..++|+++|++|
T Consensus       185 ~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~  258 (270)
T TIGR02858       185 GMMMLIRSMSPDVIVVDEIGR------EEDVEALLEALHAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRR  258 (270)
T ss_pred             HHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHhCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecC
Confidence            344555555666677888763      34455555555569999999997665  3            227999999876


Q ss_pred             e
Q psy10472        168 Q  168 (181)
Q Consensus       168 ~  168 (181)
                      +
T Consensus       259 ~  259 (270)
T TIGR02858       259 K  259 (270)
T ss_pred             C
Confidence            4

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>KOG2355|consensus

Probab=99.72  E-value=7.4e-17  Score=122.48  Aligned_cols=160  Identities=23%  Similarity=0.379  Sum_probs=109.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh-----------hhhccCcEEEEc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG-----------TWLRGNVIGLIN   77 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~-----------~~~r~~~i~~v~   77 (181)
                      .|++-|+|++++.|....++|.||||||||||+|+|-.-...|.|.+.|.+-..-..           .+|.+. +++--
T Consensus        27 dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~-~~~ag  105 (291)
T KOG2355|consen   27 DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKT-VGIAG  105 (291)
T ss_pred             CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEeccccccc-ccccc
Confidence            478999999999999999999999999999999999876677999999976432110           112211 22111


Q ss_pred             cCCCCcc-ccHHHHhhcCCCCCCHHHHHHHHHHhc-----------------------c---c-cccccCCCCCCCHHHH
Q psy10472         78 QEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLAN-----------------------A---H-GFISEFPSGALDNESE  129 (181)
Q Consensus        78 q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~-----------------------~---~-~~~~~~P~~~LD~~~~  129 (181)
                       +..+-. .++.+ +.|+-...+.++.++..+.+.                       +   . -++.++-|-.||...+
T Consensus       106 -evplq~D~sae~-mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlAR  183 (291)
T KOG2355|consen  106 -EVPLQGDISAEH-MIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLAR  183 (291)
T ss_pred             -cccccccccHHH-HHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHH
Confidence             111111 24433 333322222233233332221                       1   1 1345667789999999


Q ss_pred             HHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        130 KLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       130 ~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      ..+++.++...  +|+|||++||-.+-++. +.+++.|+.|+++.
T Consensus       184 adLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~  228 (291)
T KOG2355|consen  184 ADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD  228 (291)
T ss_pred             HHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence            99999998754  59999999999987755 99999999999976

>KOG0060|consensus

Probab=99.72  E-value=7.8e-17  Score=137.22  Aligned_cols=148  Identities=21%  Similarity=0.336  Sum_probs=116.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      ..+.+|+||+|+.|+-+.|.||||||||+|+|+++|+.+-.+|++.--...-    +     +.+-|+||.|.+--+|.+
T Consensus       448 ~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~----~-----~~lfflPQrPYmt~GTLR  518 (659)
T KOG0060|consen  448 DLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG----P-----KDLFFLPQRPYMTLGTLR  518 (659)
T ss_pred             ceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC----C-----CceEEecCCCCccccchh
Confidence            3477889999999999999999999999999999999999999987543210    0     238899999998888999


Q ss_pred             HHhhcCCC-------CCCHHHHHHHHHHhccccc----------------------------------------cccCCC
Q psy10472         89 ENIRYGDS-------SVSDEQIEEAAKLANAHGF----------------------------------------ISEFPS  121 (181)
Q Consensus        89 enl~~~~~-------~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~P~  121 (181)
                      |.+.|+..       ..+++++.+.++.+++..+                                        +.|+-|
T Consensus       519 dQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~T  598 (659)
T KOG0060|consen  519 DQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECT  598 (659)
T ss_pred             heeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechh
Confidence            99999832       2345566666665543332                                        234467


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCC
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAG  167 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G  167 (181)
                      +++|.+.+..+.+.+++.  |.|.|-|+|..+..+.=|.++.|+.+
T Consensus       599 SAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g~  642 (659)
T KOG0060|consen  599 SAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDGR  642 (659)
T ss_pred             hhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecCC
Confidence            889988888888887654  89999999999988878888888753

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.72  E-value=3e-18  Score=131.68  Aligned_cols=145  Identities=16%  Similarity=0.131  Sum_probs=92.2

Q ss_pred             ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC-CCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHh
Q psy10472         13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF-YDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENI   91 (181)
Q Consensus        13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl-~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl   91 (181)
                      -..++++.+|++++|+|||||||||||++|++. +.+..|.... .         . +. .+++..|....+  ...+++
T Consensus        20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~---------~-~~-~i~~~dqi~~~~--~~~d~i   85 (202)
T cd03243          20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A---------E-SA-SIPLVDRIFTRI--GAEDSI   85 (202)
T ss_pred             EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c---------c-cc-ccCCcCEEEEEe--cCcccc
Confidence            345677889999999999999999999999943 3333342211 1         0 11 244443332222  233333


Q ss_pred             hcCCCCC--CHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHH-HHHHhc-CCcEEEEEecCchhhhcCCeEEEEeC
Q psy10472         92 RYGDSSV--SDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQA-ALESAC-KGRTVLMIAHRLSTVQNADLIVVLQA  166 (181)
Q Consensus        92 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~-~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~  166 (181)
                      ..+....  ...++..++..+ +..-++.|+|++++|+.....+.. +++.+. .+.++|++||+.+.+..|+++..++.
T Consensus        86 ~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~  165 (202)
T cd03243          86 SDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKN  165 (202)
T ss_pred             cCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEE
Confidence            3221111  122333444332 234467899999999998776654 455543 48999999999988888889888888


Q ss_pred             CeEEe
Q psy10472        167 GQIVE  171 (181)
Q Consensus       167 G~i~~  171 (181)
                      +++..
T Consensus       166 ~~~~~  170 (202)
T cd03243         166 LHMEE  170 (202)
T ss_pred             EEEEE
Confidence            88765

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.72  E-value=4.6e-17  Score=124.87  Aligned_cols=155  Identities=17%  Similarity=0.111  Sum_probs=97.0

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc--c----
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA--T----   85 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~--~----   85 (181)
                      ++++++++.+| +.+|+||||||||||+.+|...+..... ....|..+..+-........|.+.||+..++.  .    
T Consensus        12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~   89 (198)
T cd03276          12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLS   89 (198)
T ss_pred             eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHH
Confidence            47788888887 8899999999999999999754433221 11112211110000001124888898865543  1    


Q ss_pred             --cHHHHhhcCCC------CCC---HHHHHHHHHH-----hccccccccCCCCCCCHHHHHHHHHHHHHh-cC---CcEE
Q psy10472         86 --SVRENIRYGDS------SVS---DEQIEEAAKL-----ANAHGFISEFPSGALDNESEKLVQAALESA-CK---GRTV  145 (181)
Q Consensus        86 --tv~enl~~~~~------~~~---~~~~~~~~~~-----~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~-~~---~~ti  145 (181)
                        .+.+-+.....      ..+   ++++.-+...     .+..-++.|+|+++||+..+..+.+.|.+. .+   +.||
T Consensus        90 ~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~i  169 (198)
T cd03276          90 QDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFI  169 (198)
T ss_pred             HHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEE
Confidence              22233333110      011   1222111111     244557789999999999999999998775 32   3689


Q ss_pred             EEEecCchhhhcCCeEEEEeCCe
Q psy10472        146 LMIAHRLSTVQNADLIVVLQAGQ  168 (181)
Q Consensus       146 i~vtHd~~~~~~~d~v~~l~~G~  168 (181)
                      |++||+++.+..+|+|.+|..++
T Consensus       170 ii~th~~~~i~~~d~v~~~~~~~  192 (198)
T cd03276         170 FITPQDISGLASSDDVKVFRMKD  192 (198)
T ss_pred             EEECCcccccccccceeEEEecC
Confidence            99999999998889999998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0066|consensus

Probab=99.71  E-value=7.2e-17  Score=134.30  Aligned_cols=150  Identities=24%  Similarity=0.281  Sum_probs=105.9

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--Ccc-
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFA-   84 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~-   84 (181)
                      .++++..++|-|.-...+||+||||.||||||++|.|-+.|+.|+..=+-           |- +||+.-|...  |-. 
T Consensus       599 qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL-~iG~FdQh~~E~L~~E  666 (807)
T KOG0066|consen  599 QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RL-RIGWFDQHANEALNGE  666 (807)
T ss_pred             CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------ee-eeechhhhhHHhhccc
Confidence            36788999999999999999999999999999999999999999764321           12 3888888653  222 


Q ss_pred             ccHHHHhhcCCCC--------------------------CCHHHHHHHHHHh---ccccccccCCCCCCCHHHHHHHHHH
Q psy10472         85 TSVRENIRYGDSS--------------------------VSDEQIEEAAKLA---NAHGFISEFPSGALDNESEKLVQAA  135 (181)
Q Consensus        85 ~tv~enl~~~~~~--------------------------~~~~~~~~~~~~~---~~~~~~~~~P~~~LD~~~~~~i~~~  135 (181)
                      .|..|.+.-....                          ...+..+-++..+   +.+-++.++||++||.++...+.+.
T Consensus       667 etp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEA  746 (807)
T KOG0066|consen  667 ETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEA  746 (807)
T ss_pred             cCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHH
Confidence            3666665321100                          0011111122111   2334678999999999999999999


Q ss_pred             HHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        136 LESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       136 l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      |+.+.  ..|||||||-..+.. --..|++++-.|-+
T Consensus       747 Iney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~e  781 (807)
T KOG0066|consen  747 INEYN--GGVIMVSHDERLIVETDCNLWVVENQGIDE  781 (807)
T ss_pred             HHhcc--CcEEEEecccceeeecCceEEEEccCChhh
Confidence            98874  469999999998855 34567777765644

>KOG0062|consensus

Probab=99.70  E-value=7.7e-17  Score=135.69  Aligned_cols=151  Identities=19%  Similarity=0.292  Sum_probs=115.8

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-Cccc--c
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-LFAT--S   86 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~~~--t   86 (181)
                      +++.++++++..-+.++++|+||+||||++|++.+-..|..|.+.+.+           |. +|+|.+|... .+..  +
T Consensus       378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~-ri~~f~Qhhvd~l~~~v~  445 (582)
T KOG0062|consen  378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL-RIKYFAQHHVDFLDKNVN  445 (582)
T ss_pred             hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc-eecchhHhhhhHHHHHhH
Confidence            578889999999999999999999999999999999999999887654           22 3899999753 2332  2


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHhcccc------------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472         87 VRENIRYGDSSVSDEQIEEAAKLANAHG------------------------------FISEFPSGALDNESEKLVQAAL  136 (181)
Q Consensus        87 v~enl~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~~~~~~i~~~l  136 (181)
                      ..+.++-..+...++++++.+..+|+.+                              ++.|+||+.||.++-..+-+.|
T Consensus       446 ~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al  525 (582)
T KOG0062|consen  446 AVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKAL  525 (582)
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHH
Confidence            3333322222234555666555554432                              4678899999999999999999


Q ss_pred             HHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecC
Q psy10472        137 ESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLG  174 (181)
Q Consensus       137 ~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~  174 (181)
                      +.+.  ..||+||||.+++.. |+.+|+.++|++....+
T Consensus       526 ~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg  562 (582)
T KOG0062|consen  526 KNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTPIEG  562 (582)
T ss_pred             HhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEeeec
Confidence            8875  469999999999977 99999999999975333

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.70  E-value=4e-16  Score=132.09  Aligned_cols=159  Identities=22%  Similarity=0.305  Sum_probs=114.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE---CCC-----CChhhhccCcEEEEccC-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD---LKH-----LDGTWLRGNVIGLINQE-   79 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~---i~~-----~~~~~~r~~~i~~v~q~-   79 (181)
                      ..+++++ |.+.+|++++|+|+||+|||||+++|+++.+|+.|.|.+.|+.   +..     ++...++ +.+.++.+. 
T Consensus       146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~-r~v~vv~~~~  223 (438)
T PRK07721        146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLK-RSIVVVATSD  223 (438)
T ss_pred             hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhc-CeEEEEECCC
Confidence            3578999 9999999999999999999999999999999999999996544   332     2222233 348888653 


Q ss_pred             -CCC------ccc-cHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCC-CCCCCHHHHHHHHHHHHHhc---CC
Q psy10472         80 -PVL------FAT-SVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFP-SGALDNESEKLVQAALESAC---KG  142 (181)
Q Consensus        80 -~~l------~~~-tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P-~~~LD~~~~~~i~~~l~~~~---~~  142 (181)
                       |..      +.. |+.|++.--...     .+-.+...|.+.+.+  ...+.| +.++|+.....+.+++++..   +|
T Consensus       224 ~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl--~~ge~P~~~G~dp~~~~~l~~ller~~~~~~G  301 (438)
T PRK07721        224 QPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGL--AVGEPPTTKGYTPSVFAILPKLLERTGTNASG  301 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHH--hcCCCCccccCCHHHHHHHHHHHHHhcCCCCC
Confidence             321      222 566776422111     123344455554433  223444 57999999999999998765   47


Q ss_pred             c-----EEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        143 R-----TVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       143 ~-----tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      .     ||++.+||++. ..||++..+.+|+++..
T Consensus       302 sIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls  335 (438)
T PRK07721        302 SITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLD  335 (438)
T ss_pred             CeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEe
Confidence            5     99999999985 55999999999999873

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.70  E-value=7.3e-17  Score=134.43  Aligned_cols=142  Identities=25%  Similarity=0.372  Sum_probs=101.9

Q ss_pred             cccceeeEEec-----CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-Cc
Q psy10472         10 TILKDFNLRIP-----AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-LF   83 (181)
Q Consensus        10 ~vl~~isl~i~-----~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~   83 (181)
                      ..+.+..|++.     .||+++++||||-||||+.++|+|.++|++|.    ..++           .++|=||--. -|
T Consensus       350 k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~-----------~vSyKPQyI~~~~  414 (591)
T COG1245         350 KTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL-----------KVSYKPQYISPDY  414 (591)
T ss_pred             eecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc-----------eEeecceeecCCC
Confidence            34566777665     47889999999999999999999999999997    1111           2677777532 25


Q ss_pred             cccHHHHhhcCCCC------------------------------CCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHH
Q psy10472         84 ATSVRENIRYGDSS------------------------------VSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLV  132 (181)
Q Consensus        84 ~~tv~enl~~~~~~------------------------------~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i  132 (181)
                      ++||.+.+.-..+.                              ..-+++.-++.+. .++-++.++|++.||.+.+..+
T Consensus       415 ~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~v  494 (591)
T COG1245         415 DGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV  494 (591)
T ss_pred             CCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHH
Confidence            66887776432110                              0012222222221 2233567899999999999999


Q ss_pred             HHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeC
Q psy10472        133 QAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA  166 (181)
Q Consensus       133 ~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~  166 (181)
                      .+.|++..  .++|.++|.||+-.+.+ +||+++++.
T Consensus       495 akvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G  531 (591)
T COG1245         495 AKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG  531 (591)
T ss_pred             HHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence            99999864  47999999999999988 999999963

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.70  E-value=1.7e-16  Score=144.42  Aligned_cols=64  Identities=31%  Similarity=0.479  Sum_probs=55.3

Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEeecCCchh
Q psy10472        114 GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMLGQHEN  178 (181)
Q Consensus       114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~~~~~~~  178 (181)
                      -++.|+|+++||+...+.+++.++++. +|.|||++||+++.+..||+++.|      ++|+++. .+++++
T Consensus       852 llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~-~G~~~~  922 (924)
T TIGR00630       852 LYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVA-SGTPEE  922 (924)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEE-eCCHHH
Confidence            356788999999999999999998875 589999999999998779999999      7999987 455443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0927|consensus

Probab=99.69  E-value=9.1e-17  Score=135.93  Aligned_cols=167  Identities=15%  Similarity=0.211  Sum_probs=101.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEEC--CEECCCCChhhhccCcEEEEccCC------
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS--GVDLKHLDGTWLRGNVIGLINQEP------   80 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~--g~~i~~~~~~~~r~~~i~~v~q~~------   80 (181)
                      ..+++|+.|++.+|+.++|+|+|||||||+|++|.|-..|..-++.+.  .+++..-...... ..+-..++..      
T Consensus        88 ~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~-~v~~~~~~e~~rle~~  166 (614)
T KOG0927|consen   88 VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ-AVVMETDHERKRLEYL  166 (614)
T ss_pred             ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH-HHhhhhHHHHHHHHHH
Confidence            468999999999999999999999999999999999998866555432  2222110000000 0000000000      


Q ss_pred             ----CC----cc---c-cHHHHhhcCCCC---------------------------CCHHHHHHHHHH--h-cccccccc
Q psy10472         81 ----VL----FA---T-SVRENIRYGDSS---------------------------VSDEQIEEAAKL--A-NAHGFISE  118 (181)
Q Consensus        81 ----~l----~~---~-tv~enl~~~~~~---------------------------~~~~~~~~~~~~--~-~~~~~~~~  118 (181)
                          ..    +.   . ++++-+..-...                           ....+.+.++..  + ...-++.|
T Consensus       167 ~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLD  246 (614)
T KOG0927|consen  167 AEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLD  246 (614)
T ss_pred             HHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEec
Confidence                00    00   0 111111000000                           000111111111  1 11224678


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        119 FPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       119 ~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      +||++||+++..-+.+.|..+.+. ++|+++|+.+++.. |.+|+.|++++.+.+.|+.+
T Consensus       247 EPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnyd  305 (614)
T KOG0927|consen  247 EPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYD  305 (614)
T ss_pred             CCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHH
Confidence            899999999999999999877544 89999999999966 99999999999877666543

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.69  E-value=2.3e-16  Score=130.31  Aligned_cols=152  Identities=24%  Similarity=0.386  Sum_probs=101.1

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC--------CCCCcceEEECCEECCCCChhhhccCcEEEEccC
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--------YDVSSGNITISGVDLKHLDGTWLRGNVIGLINQE   79 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl--------~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~   79 (181)
                      ...+++|+||+|++|++++|+|+|||||||||++|+|.        ++|++|.|.+--..++            +++|-+
T Consensus       395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~------------a~iPge  462 (593)
T COG2401         395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS------------ALIPGE  462 (593)
T ss_pred             eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh------------hccCcc
Confidence            45699999999999999999999999999999999986        6799998876432221            223322


Q ss_pred             C-CCccc-cHHHHhhcCC-----------------------C----CCCHHHHHHHHHHh--ccccccccCCCCCCCHHH
Q psy10472         80 P-VLFAT-SVRENIRYGD-----------------------S----SVSDEQIEEAAKLA--NAHGFISEFPSGALDNES  128 (181)
Q Consensus        80 ~-~l~~~-tv~enl~~~~-----------------------~----~~~~~~~~~~~~~~--~~~~~~~~~P~~~LD~~~  128 (181)
                      . .-|.. |+.|.+.--.                       +    ...+.+-.++++++  +..-++.|+-.+.||+.+
T Consensus       463 ~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~T  542 (593)
T COG2401         463 YEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELT  542 (593)
T ss_pred             cccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHH
Confidence            1 11222 4444432110                       0    00111111111111  111234455567999999


Q ss_pred             HHHHHHHHHHhc--CCcEEEEEecCchhhhc--CCeEEEEeCCeEEe
Q psy10472        129 EKLVQAALESAC--KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVE  171 (181)
Q Consensus       129 ~~~i~~~l~~~~--~~~tii~vtHd~~~~~~--~d~v~~l~~G~i~~  171 (181)
                      ...+..-+..++  .|.|++++||+++....  -|.++.+.-|+...
T Consensus       543 A~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~~  589 (593)
T COG2401         543 AVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPV  589 (593)
T ss_pred             HHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccccc
Confidence            999999998876  39999999999999843  79999998776543

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.68  E-value=8.7e-17  Score=124.92  Aligned_cols=147  Identities=15%  Similarity=0.149  Sum_probs=95.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      ..+.++++|+.++ ++++|+||||||||||||++++..-...     .|..   .+..  . ..++++.|   +|+. ++
T Consensus        18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~-----~g~~---vp~~--~-~~i~~~~~---i~~~~~~   82 (216)
T cd03284          18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQ-----IGSF---VPAS--K-AEIGVVDR---IFTRIGA   82 (216)
T ss_pred             ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhc-----cCCe---eccc--c-ceecceee---EeccCCc
Confidence            3488999999887 8999999999999999999987542210     1111   1111  1 23777765   4554 88


Q ss_pred             HHHhhcCCCCCCH--HHHHHHHHHh-ccccccccCC---CCCCCHHHH-HHHHHHHHHhcCCcEEEEEecCchhhhcCCe
Q psy10472         88 RENIRYGDSSVSD--EQIEEAAKLA-NAHGFISEFP---SGALDNESE-KLVQAALESACKGRTVLMIAHRLSTVQNADL  160 (181)
Q Consensus        88 ~enl~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~P---~~~LD~~~~-~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~  160 (181)
                      .+|+..+......  .++..++..+ +..-++.|+|   |+++|.... ..+.+.+.+. .+.++|++||+.+....+|+
T Consensus        83 ~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~  161 (216)
T cd03284          83 SDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGK  161 (216)
T ss_pred             hhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhc
Confidence            9999887533221  2334444433 2334568999   888887542 3344444221 37899999999876666777


Q ss_pred             EEEEeCCeEEe
Q psy10472        161 IVVLQAGQIVE  171 (181)
Q Consensus       161 v~~l~~G~i~~  171 (181)
                      +..+.+|++..
T Consensus       162 ~~~v~~~~~~~  172 (216)
T cd03284         162 LPRVKNFHVAV  172 (216)
T ss_pred             CCCeEEEEEEE
Confidence            76667776643

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>KOG0064|consensus

Probab=99.66  E-value=5.7e-16  Score=131.01  Aligned_cols=141  Identities=24%  Similarity=0.396  Sum_probs=101.9

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE   89 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e   89 (181)
                      .++..++|+|++|--..|+||||||||+|+|+|.|+.|...|...+        +    +...|-|+||.|+.--+|.+|
T Consensus       496 vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~--------P----~~~~mFYIPQRPYms~gtlRD  563 (728)
T KOG0064|consen  496 VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI--------P----RPNNIFYIPQRPYMSGGTLRD  563 (728)
T ss_pred             eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec--------C----CCcceEeccCCCccCcCcccc
Confidence            3778899999999999999999999999999999999986665543        1    112389999999877679999


Q ss_pred             HhhcCC-------CCCCHHHHHHHHHHhccccccc--------------------------------------cCCCCCC
Q psy10472         90 NIRYGD-------SSVSDEQIEEAAKLANAHGFIS--------------------------------------EFPSGAL  124 (181)
Q Consensus        90 nl~~~~-------~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~P~~~L  124 (181)
                      .+-++.       +...+++++.+++.+.+..++.                                      |+-|++.
T Consensus       564 QIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAv  643 (728)
T KOG0064|consen  564 QIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAV  643 (728)
T ss_pred             eeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhccc
Confidence            998874       2345666667766654433221                                      1234455


Q ss_pred             CHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEE
Q psy10472        125 DNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL  164 (181)
Q Consensus       125 D~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l  164 (181)
                      .++.+..+.+..+..  |.+.|-|||.+.....-.+.+-.
T Consensus       644 sidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~  681 (728)
T KOG0064|consen  644 SIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF  681 (728)
T ss_pred             ccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence            555556666665443  89999999999987754444433

>KOG0065|consensus

Probab=99.65  E-value=1.1e-15  Score=140.06  Aligned_cols=164  Identities=25%  Similarity=0.341  Sum_probs=127.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC---CcceEEECCEECCCCChhhhccCcEEEEccCCCCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV---SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p---~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~   85 (181)
                      .++|+|++.-+++|+.+.++||.||||||||++++|-..-   ..|+|.+||.+.....+    ++.++|++|+...++.
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~----~~~~aY~~e~DvH~p~  203 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP----KKTVAYNSEQDVHFPE  203 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc----CceEEeccccccccce
Confidence            4699999999999999999999999999999999998653   25699999998766543    3459999999988875


Q ss_pred             -cHHHHhhcCCCC------C---CHH-----HHHHHHHHhccccc----------------------------------c
Q psy10472         86 -SVRENIRYGDSS------V---SDE-----QIEEAAKLANAHGF----------------------------------I  116 (181)
Q Consensus        86 -tv~enl~~~~~~------~---~~~-----~~~~~~~~~~~~~~----------------------------------~  116 (181)
                       ||+|-+.|..+.      .   .+.     ..+.+++.+|+..-                                  .
T Consensus       204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~  283 (1391)
T KOG0065|consen  204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILF  283 (1391)
T ss_pred             eEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceee
Confidence             999999886311      1   111     12356666665431                                  1


Q ss_pred             ccCCCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecCchh-h-hcCCeEEEEeCCeEEeecCCch
Q psy10472        117 SEFPSGALDNESEKLVQAALESACK--GRTVLMIAHRLST-V-QNADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       117 ~~~P~~~LD~~~~~~i~~~l~~~~~--~~tii~vtHd~~~-~-~~~d~v~~l~~G~i~~~~~~~~  177 (181)
                      -|+++.|||..+.-++.+.++.+.+  +.|.+++-|.+.. + ...|.|++|.+|+++. .++.+
T Consensus       284 ~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy-~Gp~d  347 (1391)
T KOG0065|consen  284 WDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIY-QGPRD  347 (1391)
T ss_pred             eecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEE-eccHH
Confidence            2447889999999999999998764  8899999888754 3 4599999999999998 45543

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.64  E-value=2.6e-15  Score=113.39  Aligned_cols=148  Identities=16%  Similarity=0.160  Sum_probs=89.6

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc-----ceEEECCEECCCCChhhhccCcEEEEccCCC-Cc-c
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-----GNITISGVDLKHLDGTWLRGNVIGLINQEPV-LF-A   84 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~-----G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~-~   84 (181)
                      +.+..+...++.+.+|+||||||||++|.+|.-..--.+     +.-.+...+.....  . ....|.+.|.+.. ++ .
T Consensus        12 ~~~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~v~~~f~~~~~~~~~   88 (178)
T cd03239          12 YRDETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAG--I-NSASVEITFDKSYFLVLQ   88 (178)
T ss_pred             CCCCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCC--C-ceEEEEEEEECceEEecC
Confidence            345555554445999999999999999999864432111     11000001111111  1 1113667776652 23 2


Q ss_pred             ccHHHHhhcCCCCCCHHHHH--HHHHH---hccccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcC
Q psy10472         85 TSVRENIRYGDSSVSDEQIE--EAAKL---ANAHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNA  158 (181)
Q Consensus        85 ~tv~enl~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~  158 (181)
                      +...+.+.-+    ..+++.  .++..   ....-++.|+|+++||+..++.+.+.+.++. +|.++|++||+++.+..+
T Consensus        89 ~~~~~~LS~G----e~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~a  164 (178)
T cd03239          89 GKVEQILSGG----EKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENA  164 (178)
T ss_pred             CcCcccCCHH----HHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhC
Confidence            3333332211    122221  12111   1334467899999999999999999998764 469999999999988779


Q ss_pred             CeEEEEeC
Q psy10472        159 DLIVVLQA  166 (181)
Q Consensus       159 d~v~~l~~  166 (181)
                      |+++.+..
T Consensus       165 drvi~i~~  172 (178)
T cd03239         165 DKLIGVLF  172 (178)
T ss_pred             CeEEEEEE
Confidence            99999975

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.62  E-value=4.2e-15  Score=119.48  Aligned_cols=57  Identities=18%  Similarity=0.176  Sum_probs=50.1

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCC
Q psy10472        111 NAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAG  167 (181)
Q Consensus       111 ~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G  167 (181)
                      ...-++.|+|+++||+..+..+.+.+....++.|+|++||++.....||+++.|.+|
T Consensus       192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~  248 (276)
T cd03241         192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKE  248 (276)
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEe
Confidence            444567899999999999999999998877789999999999977779999999876

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.61  E-value=1.8e-15  Score=117.94  Aligned_cols=140  Identities=16%  Similarity=0.121  Sum_probs=84.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEE-EEccCCCCcc---
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG-LINQEPVLFA---   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~-~v~q~~~l~~---   84 (181)
                      +.+.+|++++++++++++|.||||+|||||+++++-..        +            +. + +| |||.+...++   
T Consensus        17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------~------------la-~-~g~~vpa~~~~~~~~~   74 (222)
T cd03285          17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV--------L------------MA-Q-IGCFVPCDSADIPIVD   74 (222)
T ss_pred             CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH--------H------------HH-H-hCCCcCcccEEEeccc
Confidence            46899999999999999999999999999999987210        0            00 0 22 3333221111   


Q ss_pred             ----c-cHHHHhhcCCCCCCHH--HHHHHHHHhc-cccccccCC---CCCCCHHHHHHHH-HHHHHhcCCcEEEEEecCc
Q psy10472         85 ----T-SVRENIRYGDSSVSDE--QIEEAAKLAN-AHGFISEFP---SGALDNESEKLVQ-AALESACKGRTVLMIAHRL  152 (181)
Q Consensus        85 ----~-tv~enl~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~P---~~~LD~~~~~~i~-~~l~~~~~~~tii~vtHd~  152 (181)
                          . ...+.+.-+.+....+  ++..+++.+. ..-++.|+|   |+++|+....... +.+.+ ..+.++|++||+.
T Consensus        75 ~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~  153 (222)
T cd03285          75 CILARVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFH  153 (222)
T ss_pred             eeEeeeccccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechH
Confidence                0 0111111111111122  2223333222 234568999   8889998764322 43432 2478999999975


Q ss_pred             hhhhcCCeEEEEeCCeEEe
Q psy10472        153 STVQNADLIVVLQAGQIVE  171 (181)
Q Consensus       153 ~~~~~~d~v~~l~~G~i~~  171 (181)
                      +....||++..+++|++..
T Consensus       154 el~~~~~~~~~i~~g~~~~  172 (222)
T cd03285         154 ELTALADEVPNVKNLHVTA  172 (222)
T ss_pred             HHHHHhhcCCCeEEEEEEE
Confidence            5555699999999999865

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.59  E-value=9.6e-15  Score=108.56  Aligned_cols=136  Identities=17%  Similarity=0.243  Sum_probs=85.9

Q ss_pred             ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEE-EEccCCCCccccHHHHh
Q psy10472         13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG-LINQEPVLFATSVRENI   91 (181)
Q Consensus        13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~-~v~q~~~l~~~tv~enl   91 (181)
                      ...++.+.++.+++|+|||||||||+++++....-..+|.+.... .. +          .+ ++++....|   +....
T Consensus        12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~-~----------~g~~~~~~~~~~---i~~~~   76 (162)
T cd03227          12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV-K----------AGCIVAAVSAEL---IFTRL   76 (162)
T ss_pred             eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc-c----------CCCcceeeEEEE---ehhee
Confidence            344555666679999999999999999998877655555443311 10 0          11 111111000   00011


Q ss_pred             hcCCCCCCHHHHHHHHHHh------ccccccccCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecCchhhhcCCeEEEE
Q psy10472         92 RYGDSSVSDEQIEEAAKLA------NAHGFISEFPSGALDNESEKLVQAALESA-CKGRTVLMIAHRLSTVQNADLIVVL  164 (181)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~P~~~LD~~~~~~i~~~l~~~-~~~~tii~vtHd~~~~~~~d~v~~l  164 (181)
                      .+   .....+...+.+.+      ...-++.|+|++++|+.....+.+.+.+. .++.++|++||+++....+|+++.|
T Consensus        77 ~l---S~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l  153 (162)
T cd03227          77 QL---SGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHI  153 (162)
T ss_pred             ec---cccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEE
Confidence            11   11122222222222      22446789999999999999999988765 3478999999999998889999998


Q ss_pred             eC
Q psy10472        165 QA  166 (181)
Q Consensus       165 ~~  166 (181)
                      +.
T Consensus       154 ~~  155 (162)
T cd03227         154 KK  155 (162)
T ss_pred             EE
Confidence            64

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>KOG0062|consensus

Probab=99.59  E-value=6.6e-16  Score=130.12  Aligned_cols=158  Identities=20%  Similarity=0.265  Sum_probs=103.3

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE--CCCC---------ChhhhccCcEEE
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD--LKHL---------DGTWLRGNVIGL   75 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~--i~~~---------~~~~~r~~~i~~   75 (181)
                      +.+.+|++-++++..|-.++|+|+||+|||||||+|+.      |.|.....+  +...         .....|   .-+
T Consensus        91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l~~D~~~---~df  161 (582)
T KOG0062|consen   91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVLESDTER---LDF  161 (582)
T ss_pred             cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhhhccHHH---HHH
Confidence            34678999999999999999999999999999999997      333332211  1000         000111   235


Q ss_pred             EccCCCCccc-cH---HHHhhcCCC------------CCCHHHHHHHHHH---hccccccccCCCCCCCHHHHHHHHHHH
Q psy10472         76 INQEPVLFAT-SV---RENIRYGDS------------SVSDEQIEEAAKL---ANAHGFISEFPSGALDNESEKLVQAAL  136 (181)
Q Consensus        76 v~q~~~l~~~-tv---~enl~~~~~------------~~~~~~~~~~~~~---~~~~~~~~~~P~~~LD~~~~~~i~~~l  136 (181)
                      +.++..+... +.   ..++..+..            .....+++-++..   ...+-++.|+||+.||..+..-+...|
T Consensus       162 l~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL  241 (582)
T KOG0062|consen  162 LAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYL  241 (582)
T ss_pred             HHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHH
Confidence            5566544433 32   232322211            0111222222221   233456789999999999999999998


Q ss_pred             HHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472        137 ESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ  175 (181)
Q Consensus       137 ~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~  175 (181)
                      ..+.  .|+|+||||-.++.. |.-|+.+++-++-.+.|.
T Consensus       242 ~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN  279 (582)
T KOG0062|consen  242 QTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGN  279 (582)
T ss_pred             hhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCc
Confidence            7764  899999999999976 999999988777554443

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.58  E-value=8.3e-15  Score=113.59  Aligned_cols=157  Identities=18%  Similarity=0.197  Sum_probs=88.5

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc---------eEEECCEE-------CCCCChhhhccCcEEE
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG---------NITISGVD-------LKHLDGTWLRGNVIGL   75 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G---------~i~i~g~~-------i~~~~~~~~r~~~i~~   75 (181)
                      ++++.+++.+| +.+|+|||||||||||.+|...+-....         .....|..       +..-..........-+
T Consensus        14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~   92 (213)
T cd03277          14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQF   92 (213)
T ss_pred             cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEE
Confidence            46677777666 8899999999999999998755421110         01111110       0000000011121225


Q ss_pred             EccCCC-Cc-cccHHHHhhc-CC--C--C-------CCHHHHHHHHHH------hccccccccCCCCCCCHHHHHHHHHH
Q psy10472         76 INQEPV-LF-ATSVRENIRY-GD--S--S-------VSDEQIEEAAKL------ANAHGFISEFPSGALDNESEKLVQAA  135 (181)
Q Consensus        76 v~q~~~-l~-~~tv~enl~~-~~--~--~-------~~~~~~~~~~~~------~~~~~~~~~~P~~~LD~~~~~~i~~~  135 (181)
                      ++|+.. .+ ..+..|.+.- ..  .  .       ....+...+...      ....-++.|+|+++||+..+..+++.
T Consensus        93 ~~q~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~  172 (213)
T cd03277          93 LPQDRVGEFAKLSPIELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDM  172 (213)
T ss_pred             EchHHHHHHHhCChHhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHH
Confidence            556431 12 2244433321 10  0  0       011222111111      23345778999999999999999999


Q ss_pred             HHHhc-C-C-cEEEEEecCchhhh-cCC--eEEEEeCCeE
Q psy10472        136 LESAC-K-G-RTVLMIAHRLSTVQ-NAD--LIVVLQAGQI  169 (181)
Q Consensus       136 l~~~~-~-~-~tii~vtHd~~~~~-~~d--~v~~l~~G~i  169 (181)
                      +.... + | .|+|++||++.... .||  +|++|++|+-
T Consensus       173 l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~~  212 (213)
T cd03277         173 LVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGPH  212 (213)
T ss_pred             HHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCcc
Confidence            98764 4 4 58999999986653 355  8899999863

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.57  E-value=1.2e-14  Score=112.03  Aligned_cols=125  Identities=18%  Similarity=0.143  Sum_probs=78.7

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEE-EEccCCCCcc-c
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG-LINQEPVLFA-T   85 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~-~v~q~~~l~~-~   85 (181)
                      .+.+.+|++|++++|++++|+||||+|||||+++++++.-                    +. + +| ++   |..+. .
T Consensus        15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~--------------------la-~-~G~~v---pa~~~~l   69 (204)
T cd03282          15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI--------------------MA-Q-IGCFV---PAEYATL   69 (204)
T ss_pred             CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH--------------------HH-H-cCCCc---chhhcCc
Confidence            3568999999999999999999999999999999987730                    00 0 11 11   11111 1


Q ss_pred             cHHHHhhcCCCC----------CC--HHHHHHHHHHhc-cccccccCCCCCCCHHHHHHH-HHHHHHhc-CCcEEEEEec
Q psy10472         86 SVRENIRYGDSS----------VS--DEQIEEAAKLAN-AHGFISEFPSGALDNESEKLV-QAALESAC-KGRTVLMIAH  150 (181)
Q Consensus        86 tv~enl~~~~~~----------~~--~~~~~~~~~~~~-~~~~~~~~P~~~LD~~~~~~i-~~~l~~~~-~~~tii~vtH  150 (181)
                      ++.++|......          ..  ..++..++..+. -.-++.|+|+.++|+.....+ ..+++.+. .+.++|++||
T Consensus        70 ~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH  149 (204)
T cd03282          70 PIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATH  149 (204)
T ss_pred             cChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence            344444321100          00  112223333322 233567999999999765443 44555543 4899999999


Q ss_pred             Cchhhhc
Q psy10472        151 RLSTVQN  157 (181)
Q Consensus       151 d~~~~~~  157 (181)
                      +.+.+..
T Consensus       150 ~~~l~~~  156 (204)
T cd03282         150 FRDIAAI  156 (204)
T ss_pred             hHHHHHH
Confidence            9998865

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.56  E-value=1.9e-15  Score=127.72  Aligned_cols=68  Identities=26%  Similarity=0.321  Sum_probs=57.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc-eEEECCEECCCCChhhhccCcEEEEccCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG-NITISGVDLKHLDGTWLRGNVIGLINQEP   80 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G-~i~i~g~~i~~~~~~~~r~~~i~~v~q~~   80 (181)
                      ..+|++||+++++||+++|+|||||||||||+  +|+..|++| +|.++|.++...+...+..-  -+|||+.
T Consensus        19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~L--R~VFQ~f   87 (504)
T TIGR03238        19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETL--DEIFDGF   87 (504)
T ss_pred             HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHH--HHHHHhh
Confidence            46899999999999999999999999999999  788888888 79999999987665443322  2788865

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.48  E-value=3.2e-14  Score=118.80  Aligned_cols=147  Identities=22%  Similarity=0.286  Sum_probs=94.2

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEE-----------ECCEECCCCChhhhccC--cEEEEcc----CCC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNIT-----------ISGVDLKHLDGTWLRGN--VIGLINQ----EPV   81 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~-----------i~g~~i~~~~~~~~r~~--~i~~v~q----~~~   81 (181)
                      ..+|++++|+||||-||||-+|+|+|.+.|.=|+..           |.|..+...- ..+...  ++..=+|    -|-
T Consensus        97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF-~~l~~g~~r~v~K~QYVd~iPk  175 (591)
T COG1245          97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYF-KKLYEGELRAVHKPQYVDLIPK  175 (591)
T ss_pred             CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHH-HHHHcCCcceecchHHHHHHHH
Confidence            458999999999999999999999999999877531           1111111000 000000  1222233    234


Q ss_pred             CccccHHHHhhcCCCCCCHH-------------------------HHHHHHHHh-ccccccccCCCCCCCHHHHHHHHHH
Q psy10472         82 LFATSVRENIRYGDSSVSDE-------------------------QIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAA  135 (181)
Q Consensus        82 l~~~tv~enl~~~~~~~~~~-------------------------~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~~  135 (181)
                      .+.++|.|-+.-.......+                         ++.-++..+ +.+-++.++|++.||...+..+...
T Consensus       176 ~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~  255 (591)
T COG1245         176 VVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARV  255 (591)
T ss_pred             HhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHH
Confidence            45567777765321111111                         111111111 1222467889999999999999999


Q ss_pred             HHHhcC-CcEEEEEecCchhhhc-CCeEEEEeC
Q psy10472        136 LESACK-GRTVLMIAHRLSTVQN-ADLIVVLQA  166 (181)
Q Consensus       136 l~~~~~-~~tii~vtHd~~~~~~-~d~v~~l~~  166 (181)
                      ++.+.+ +++||+|.||+..+.+ +|-|.++..
T Consensus       256 Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG  288 (591)
T COG1245         256 IRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG  288 (591)
T ss_pred             HHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence            999876 8999999999999987 999888853

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.47  E-value=2.6e-13  Score=105.26  Aligned_cols=127  Identities=20%  Similarity=0.223  Sum_probs=81.0

Q ss_pred             eEEecCC--cEEEEECCCCCcHHHHHHHHh--cCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc--ccHHH
Q psy10472         16 NLRIPAG--QKVAIVGSSGNGKSTIVALLE--RFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA--TSVRE   89 (181)
Q Consensus        16 sl~i~~G--e~~~liG~nGsGKSTLl~~l~--gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~--~tv~e   89 (181)
                      ++.+.++  .+++|+||||+|||||||.++  +++ +..|.......            ..++|..|...-+.  .++.+
T Consensus        21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~------------~~~~~~d~i~~~l~~~~si~~   87 (213)
T cd03281          21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADS------------ATIGLVDKIFTRMSSRESVSS   87 (213)
T ss_pred             eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCC------------cEEeeeeeeeeeeCCccChhh
Confidence            4555555  789999999999999999998  433 56676544320            12777777654442  36666


Q ss_pred             HhhcCCCCCCHHHHHHHHHHhcc-ccccccCCCCCCCHHH-HHHHHHHHHHhc-C---CcEEEEEecCchhhhc
Q psy10472         90 NIRYGDSSVSDEQIEEAAKLANA-HGFISEFPSGALDNES-EKLVQAALESAC-K---GRTVLMIAHRLSTVQN  157 (181)
Q Consensus        90 nl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~P~~~LD~~~-~~~i~~~l~~~~-~---~~tii~vtHd~~~~~~  157 (181)
                      ++....  ..-+++..++..+.- .-++-|+|++++|+.. ...+..+++.+. +   +.++|++||+.+.+..
T Consensus        88 ~~S~f~--~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~  159 (213)
T cd03281          88 GQSAFM--IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR  159 (213)
T ss_pred             ccchHH--HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence            653221  112333444443332 2356899999999975 444455666643 2   3589999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.47  E-value=2.8e-13  Score=105.61  Aligned_cols=133  Identities=15%  Similarity=0.149  Sum_probs=85.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhc-CCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-cc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLER-FYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TS   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~g-l~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~t   86 (181)
                      +.+.++++|++++|++++|+||||+||||+++++++ .+.+..|...+.. ..           .++|..|   +|. ..
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~-----------~~~~~~~---i~~~~~   82 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SA-----------TLSIFDS---VLTRMG   82 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ce-----------EEeccce---EEEEec
Confidence            468899999999999999999999999999999999 6778888765432 11           1333222   121 12


Q ss_pred             HHHHhhcCCCCC--CHHHHHHHHHHhccc-cccccCCCCCCCHHHHHH-HHHHHHHhc--CCcEEEEEecCchhhh
Q psy10472         87 VRENIRYGDSSV--SDEQIEEAAKLANAH-GFISEFPSGALDNESEKL-VQAALESAC--KGRTVLMIAHRLSTVQ  156 (181)
Q Consensus        87 v~enl~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~P~~~LD~~~~~~-i~~~l~~~~--~~~tii~vtHd~~~~~  156 (181)
                      ..|++.-+.+..  .-.++..+++.+.-. -++.|+|..+.|+..... ...+++.+.  .+.++|++||+.+...
T Consensus        83 ~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~  158 (222)
T cd03287          83 ASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGE  158 (222)
T ss_pred             CccccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence            233332221111  123444555554333 356789988888665444 344555443  3789999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.45  E-value=1.4e-12  Score=124.53  Aligned_cols=63  Identities=22%  Similarity=0.413  Sum_probs=54.6

Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEe------CCeEEeecCCchh
Q psy10472        115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQ------AGQIVEMLGQHEN  178 (181)
Q Consensus       115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~------~G~i~~~~~~~~~  178 (181)
                      ++.|+||.+|++...+.+++++.++. .|.|||+|.||++.++.||+|+-|.      .|+|+. .|++++
T Consensus      1724 yilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva-~Gtp~~ 1793 (1809)
T PRK00635       1724 FLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILF-SGPPKD 1793 (1809)
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEE-EeCHHH
Confidence            56788999999999999999998874 6999999999999999999999994      568887 465544

>TIGR01069 mutS2 MutS2 family protein

Probab=99.37  E-value=5.7e-13  Score=120.03  Aligned_cols=128  Identities=16%  Similarity=0.151  Sum_probs=83.1

Q ss_pred             eeEEecCC-cEEEEECCCCCcHHHHHHHHhcC-CCCCcce-EEECCEECCCCChhhhccCcEEEEccCCCCcc--ccHHH
Q psy10472         15 FNLRIPAG-QKVAIVGSSGNGKSTIVALLERF-YDVSSGN-ITISGVDLKHLDGTWLRGNVIGLINQEPVLFA--TSVRE   89 (181)
Q Consensus        15 isl~i~~G-e~~~liG~nGsGKSTLl~~l~gl-~~p~~G~-i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~--~tv~e   89 (181)
                      +|+++.++ ++++|+||||+|||||||+++|. +.+..|. |....           . ..++|..|....+.  .++.+
T Consensus       314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~-----------~-~~~~~~d~i~~~i~~~~si~~  381 (771)
T TIGR01069       314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANE-----------H-SEIPYFEEIFADIGDEQSIEQ  381 (771)
T ss_pred             ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCc-----------c-ccccchhheeeecChHhHHhh
Confidence            78889887 89999999999999999999998 5566662 21110           0 11444444432222  25555


Q ss_pred             HhhcCCCCCCHHHHHHHHHHhc-cccccccCCCCCCCHHHHHHH-HHHHHHhc-CCcEEEEEecCchhhh
Q psy10472         90 NIRYGDSSVSDEQIEEAAKLAN-AHGFISEFPSGALDNESEKLV-QAALESAC-KGRTVLMIAHRLSTVQ  156 (181)
Q Consensus        90 nl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~P~~~LD~~~~~~i-~~~l~~~~-~~~tii~vtHd~~~~~  156 (181)
                      ++....  ....++..++..+. -.-++.|+|++++|+.....+ ..++..+. .|+++|++||+.+...
T Consensus       382 ~LStfS--~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~  449 (771)
T TIGR01069       382 NLSTFS--GHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA  449 (771)
T ss_pred             hhhHHH--HHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence            553321  11222333444332 234568999999999988877 45666654 5899999999988654

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.37  E-value=9.9e-12  Score=109.95  Aligned_cols=64  Identities=33%  Similarity=0.497  Sum_probs=54.9

Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecCchhhhcCCeEEEE------eCCeEEeecCCchhh
Q psy10472        115 FISEFPSGALDNESEKLVQAALESA-CKGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMLGQHENT  179 (181)
Q Consensus       115 ~~~~~P~~~LD~~~~~~i~~~l~~~-~~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~~~~~~~~  179 (181)
                      ++.|+||.+|-..-.+.+++.|.++ .+|.|||+|.|+++.++.||+|+-|      ..|+|+. .++++++
T Consensus       847 YiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva-~GTPeev  917 (935)
T COG0178         847 YILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVA-SGTPEEV  917 (935)
T ss_pred             EEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEE-ecCHHHH
Confidence            4678899999999999999999886 4699999999999999999999999      3578888 5666543

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.33  E-value=1.4e-11  Score=92.46  Aligned_cols=155  Identities=21%  Similarity=0.270  Sum_probs=88.8

Q ss_pred             eEEecCCcEEEEECCCCCcHHHHHHHHhcCCC--CCcceEEECCE-ECCCCCh-----hhhccC-cEEEEccCCCCccc-
Q psy10472         16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYD--VSSGNITISGV-DLKHLDG-----TWLRGN-VIGLINQEPVLFAT-   85 (181)
Q Consensus        16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~--p~~G~i~i~g~-~i~~~~~-----~~~r~~-~i~~v~q~~~l~~~-   85 (181)
                      .|++++- ++.|+|.||+||||||-.|+-...  +..|.=-+.+. +.+.-..     ..++.+ ..||.+---.+++. 
T Consensus        32 ~LeF~ap-IT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~a  110 (233)
T COG3910          32 RLEFRAP-ITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVA  110 (233)
T ss_pred             hccccCc-eEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHH
Confidence            3566654 999999999999999999974432  22222222221 1110000     011211 13333322222221 


Q ss_pred             cHHHHhh----cCCCCC----CHHH-HHHHHHHhcc-ccccccCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecCchh
Q psy10472         86 SVRENIR----YGDSSV----SDEQ-IEEAAKLANA-HGFISEFPSGALDNESEKLVQAALESACK-GRTVLMIAHRLST  154 (181)
Q Consensus        86 tv~enl~----~~~~~~----~~~~-~~~~~~~~~~-~~~~~~~P~~~LD~~~~~~i~~~l~~~~~-~~tii~vtHd~~~  154 (181)
                      +-.|.+.    ++.+..    ..+. +.-..+.+.- --++.|+|.++|.|.-+..++..|+++.+ |.-+||+||.+-.
T Consensus       111 s~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiL  190 (233)
T COG3910         111 SYLDEADGEANYGGRSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPIL  190 (233)
T ss_pred             HHHHhhhhhcccCCcchhhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            2222221    111100    0111 1222233322 23578999999999999999999998764 8999999999988


Q ss_pred             hhc-CCeEEEEeCCeEEe
Q psy10472        155 VQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       155 ~~~-~d~v~~l~~G~i~~  171 (181)
                      +.. --+|+.++.+.+.+
T Consensus       191 lAiP~A~I~~~~~~g~~~  208 (233)
T COG3910         191 LAIPGAEIYEISESGIEE  208 (233)
T ss_pred             eeCCCcEEEEEecCCccc
Confidence            876 67899998876644

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.32  E-value=3.9e-11  Score=96.14  Aligned_cols=53  Identities=15%  Similarity=0.174  Sum_probs=41.2

Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-C---CeEEEEeCCeE
Q psy10472        114 GFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-A---DLIVVLQAGQI  169 (181)
Q Consensus       114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~---d~v~~l~~G~i  169 (181)
                      -++.|+|+++||+..++.+.+.+....   .+++++|+...+.. |   ++++.+++|++
T Consensus       213 illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~~~~~i~~l~~g~i  269 (270)
T cd03242         213 VLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWLRRAQIFRVDAGTL  269 (270)
T ss_pred             EEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhccCccEEEEeCcEE
Confidence            356678999999999999999997653   46666666665544 6   78999999986

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.26  E-value=2e-11  Score=94.63  Aligned_cols=51  Identities=20%  Similarity=0.307  Sum_probs=41.4

Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEe
Q psy10472        115 FISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ  165 (181)
Q Consensus       115 ~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~  165 (181)
                      ++.|+|.++||...+..+.++|+...++.-+|++||+...+..||+.+.+.
T Consensus       162 ~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~  212 (220)
T PF02463_consen  162 LILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT  212 (220)
T ss_dssp             EEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            366789999999999999999998877889999999999999999887763

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.26  E-value=7.5e-12  Score=94.95  Aligned_cols=123  Identities=17%  Similarity=0.116  Sum_probs=68.3

Q ss_pred             EEEEECCCCCcHHHHHHHHh-cCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhcCCCCC--CH
Q psy10472         24 KVAIVGSSGNGKSTIVALLE-RFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSV--SD  100 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~-gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~~~~~~--~~  100 (181)
                      +++|.||||+|||||||.++ ..+.+..|......         .   ..++++-+-...+.  ..+++.-+....  ..
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~---------~---~~~~~~d~il~~~~--~~d~~~~~~s~fs~~~   66 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAE---------S---AELPVFDRIFTRIG--ASDSLAQGLSTFMVEM   66 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeeh---------h---eEecccceEEEEeC--CCCchhccccHHHHHH
Confidence            36899999999999999998 44444444322211         0   01222222111111  112221111111  12


Q ss_pred             HHHHHHHHHh-ccccccccCCCCCCCHHHHHHH-HHHHHHhc-C-CcEEEEEecCchhhhcCCe
Q psy10472        101 EQIEEAAKLA-NAHGFISEFPSGALDNESEKLV-QAALESAC-K-GRTVLMIAHRLSTVQNADL  160 (181)
Q Consensus       101 ~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i-~~~l~~~~-~-~~tii~vtHd~~~~~~~d~  160 (181)
                      .++..++..+ +..-++.|+|++++|+.....+ ..+++.+. + +.++|++||+.+....|++
T Consensus        67 ~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~  130 (185)
T smart00534       67 KETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE  130 (185)
T ss_pred             HHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence            2333444432 2234678999999999976665 45555543 3 7899999999976665664

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.25  E-value=1.9e-11  Score=95.11  Aligned_cols=134  Identities=18%  Similarity=0.195  Sum_probs=84.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-cceEEECCEECCCCChhhhccCcEEEEccCCCCcc-cc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TS   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~t   86 (181)
                      +.+-+|++|++++|++++|.||||+||||+++++++..-.. .|.      .+   +...   ..++++   ..+|. ..
T Consensus        17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~v---pa~~---~~i~~~---~~i~~~~~   81 (218)
T cd03286          17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DV---PAKS---MRLSLV---DRIFTRIG   81 (218)
T ss_pred             CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------cc---Cccc---cEeccc---cEEEEecC
Confidence            46889999999999999999999999999999998764221 121      00   0000   012221   12232 23


Q ss_pred             HHHHhhcCCCCC--CHHHHHHHHHHhccc-cccccCCCCCCCHHHHHHHHHH-HHHhc-C-CcEEEEEecCchhhhc
Q psy10472         87 VRENIRYGDSSV--SDEQIEEAAKLANAH-GFISEFPSGALDNESEKLVQAA-LESAC-K-GRTVLMIAHRLSTVQN  157 (181)
Q Consensus        87 v~enl~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~P~~~LD~~~~~~i~~~-l~~~~-~-~~tii~vtHd~~~~~~  157 (181)
                      ..|++..+.+..  .-.++..+++...-. -++-|+|..|+|+.....+... ++.+. . +.++|++||+++.+..
T Consensus        82 ~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~  158 (218)
T cd03286          82 ARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE  158 (218)
T ss_pred             cccccccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence            445554442222  123344555554333 3567889999999887666666 55543 3 8999999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.24  E-value=2.1e-11  Score=99.52  Aligned_cols=134  Identities=16%  Similarity=0.163  Sum_probs=86.6

Q ss_pred             eeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhcC
Q psy10472         15 FNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYG   94 (181)
Q Consensus        15 isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~~   94 (181)
                      +++.++.|+.++|+||+|||||||+++|+++++|..|.+.+..  ...+....  ...+.++.+...-           +
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~--~~~~~l~~~~~~~-----------~  201 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH--PNYVHLFYSKGGQ-----------G  201 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC--CCEEEEEecCCCC-----------C
Confidence            5678899999999999999999999999999999999888854  22222211  1224444432110           0


Q ss_pred             CCCCCHHH-HHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCC-cEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472         95 DSSVSDEQ-IEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKG-RTVLMIAHRLSTVQNADLIVVLQAGQIVE  171 (181)
Q Consensus        95 ~~~~~~~~-~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~-~tii~vtHd~~~~~~~d~v~~l~~G~i~~  171 (181)
                      ....+..+ +..++ ....+-++-++|.+       .+.+++++....| .+++.++|..+.....+|+..|..|++..
T Consensus       202 ~~~~~~~~~l~~~L-r~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~  272 (308)
T TIGR02788       202 LAKVTPKDLLQSCL-RMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAG  272 (308)
T ss_pred             cCccCHHHHHHHHh-cCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccc
Confidence            01112222 22233 24455566677775       3455666655454 46799999998666688988888777655

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=99.22  E-value=9.5e-11  Score=99.59  Aligned_cols=158  Identities=20%  Similarity=0.250  Sum_probs=103.4

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---h----hhccCcEEEEccC--C
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---T----WLRGNVIGLINQE--P   80 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~----~~r~~~i~~v~q~--~   80 (181)
                      .+++++ |.+.+|++++|+|+||+|||||+++|+++.+|+.|.+...|+.-.....   .    ...++.+-++.+.  +
T Consensus       152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~  230 (440)
T TIGR01026       152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQS  230 (440)
T ss_pred             eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCC
Confidence            578888 9999999999999999999999999999999999887776654322211   0    1112223333332  2


Q ss_pred             CC------ccc-cHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCC-CCCCHHHHHHHHHHHHHhc-CCc---
Q psy10472         81 VL------FAT-SVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPS-GALDNESEKLVQAALESAC-KGR---  143 (181)
Q Consensus        81 ~l------~~~-tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~-~~LD~~~~~~i~~~l~~~~-~~~---  143 (181)
                      ..      +.. |+.|.+.--...     .+-.+..+|.+.+.+  ...+.|. .++|+.....+.+++.+.. .+.   
T Consensus       231 p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl--~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSI  308 (440)
T TIGR01026       231 PLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGL--AAGEPPATKGYTPSVFSTLPRLLERAGASGKGSI  308 (440)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHH--hcCCCCcccccChhHHHHHHHHHHHhccCCCCee
Confidence            11      112 455665421111     123344455554432  2334454 5899999999999998764 355   


Q ss_pred             ----EEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472        144 ----TVLMIAHRLSTVQNADLIVVLQAGQIVE  171 (181)
Q Consensus       144 ----tii~vtHd~~~~~~~d~v~~l~~G~i~~  171 (181)
                          ||++.+||+.. ..||++..+.+|+++.
T Consensus       309 T~i~tVl~~~~d~~d-pi~d~~~~i~dG~ivL  339 (440)
T TIGR01026       309 TAFYTVLVEGDDMNE-PIADSVRGILDGHIVL  339 (440)
T ss_pred             eEEEEEEccCcCCCc-chhhhhccccceEEEE
Confidence                78888998732 2389999999999986

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=99.20  E-value=2.1e-11  Score=92.59  Aligned_cols=79  Identities=22%  Similarity=0.262  Sum_probs=57.5

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--Ccc-ccHH
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFA-TSVR   88 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~-~tv~   88 (181)
                      ..-+.+.+++|+.++|+||||||||||+++|+++++|+.|.|.+.+..-...+    ....+++++|...  .++ .+..
T Consensus        15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~----~~~~~~~~~~~~~~~~~~~~~~~   90 (186)
T cd01130          15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP----HPNWVRLVTRPGNVEGSGEVTMA   90 (186)
T ss_pred             HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC----CCCEEEEEEecCCCCCCCccCHH
Confidence            34455678999999999999999999999999999999999999775332221    1123667666543  333 3777


Q ss_pred             HHhhcC
Q psy10472         89 ENIRYG   94 (181)
Q Consensus        89 enl~~~   94 (181)
                      +.+...
T Consensus        91 ~~l~~~   96 (186)
T cd01130          91 DLLRSA   96 (186)
T ss_pred             HHHHHH
Confidence            777543

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.17  E-value=5.4e-11  Score=91.23  Aligned_cols=47  Identities=30%  Similarity=0.395  Sum_probs=37.8

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCC------------CCcceEEECCEECCCCChhhh
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYD------------VSSGNITISGVDLKHLDGTWL   68 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~------------p~~G~i~i~g~~i~~~~~~~~   68 (181)
                      ++|++++|+||||||||||+++|++.++            |..|+  ++|.++...+...+
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~   61 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEF   61 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHH
Confidence            5899999999999999999999999985            66777  57776655554444

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=99.16  E-value=2.9e-11  Score=102.18  Aligned_cols=160  Identities=18%  Similarity=0.185  Sum_probs=97.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE---EECCEECCCCChh-----hhccCcEEEEccCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI---TISGVDLKHLDGT-----WLRGNVIGLINQEP   80 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i---~i~g~~i~~~~~~-----~~r~~~i~~v~q~~   80 (181)
                      ..+++++ |++.+|++++|+|+||||||||+++|+|+.+|+.+.+   -.++.++..+...     ...+..+++++|+.
T Consensus       143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~  221 (434)
T PRK07196        143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE  221 (434)
T ss_pred             eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence            3589999 9999999999999999999999999999999886433   3334333322111     12233589999998


Q ss_pred             CCccc-cHHHHhhcCC-----CC-------CCHHHHHHHHHHhccccccccCCCC-CCCHHHHHHHHHHHHHh---c-CC
Q psy10472         81 VLFAT-SVRENIRYGD-----SS-------VSDEQIEEAAKLANAHGFISEFPSG-ALDNESEKLVQAALESA---C-KG  142 (181)
Q Consensus        81 ~l~~~-tv~enl~~~~-----~~-------~~~~~~~~~~~~~~~~~~~~~~P~~-~LD~~~~~~i~~~l~~~---~-~~  142 (181)
                      .++.. ++.++..+..     ..       .+-.+...+.+.+.+  ...+.|.. +--+..-..+-.++++.   . .|
T Consensus       222 s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl--~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~G  299 (434)
T PRK07196        222 SPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIAL--SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNG  299 (434)
T ss_pred             ChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHH--hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCE
Confidence            87754 8887765321     00       112233334443332  23344543 55565555666666553   2 23


Q ss_pred             -cEEEEEecC-chhh-hc-CCeEEEEeCCeEEe
Q psy10472        143 -RTVLMIAHR-LSTV-QN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       143 -~tii~vtHd-~~~~-~~-~d~v~~l~~G~i~~  171 (181)
                       .|.+.+-.- -+.+ .. +|.+.-+-||+|+-
T Consensus       300 SIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivL  332 (434)
T PRK07196        300 TMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVL  332 (434)
T ss_pred             EeeeeeEEEccCCCCCCchhHhhhhhcceEEEE
Confidence             354444331 1122 22 67777777888864

>KOG0063|consensus

Probab=99.14  E-value=1.4e-10  Score=96.60  Aligned_cols=143  Identities=20%  Similarity=0.310  Sum_probs=93.0

Q ss_pred             ccccceeeEEecCCc-----EEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC-
Q psy10472          9 KTILKDFNLRIPAGQ-----KVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL-   82 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge-----~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l-   82 (181)
                      +..+.+..|.|+.|+     ++..+|.||.|||||+++++|.++|++|.      ++..+        .++|=||.... 
T Consensus       349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l--------nVSykpqkispK  414 (592)
T KOG0063|consen  349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL--------NVSYKPQKISPK  414 (592)
T ss_pred             eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc--------ceeccccccCcc
Confidence            446778888888875     68899999999999999999999999871      11111        13333443221 


Q ss_pred             ccccHHHHhhcC------------------------------CCCCCHHHHHHHHHHhcc--ccccccCCCCCCCHHHHH
Q psy10472         83 FATSVRENIRYG------------------------------DSSVSDEQIEEAAKLANA--HGFISEFPSGALDNESEK  130 (181)
Q Consensus        83 ~~~tv~enl~~~------------------------------~~~~~~~~~~~~~~~~~~--~~~~~~~P~~~LD~~~~~  130 (181)
                      +.+||++-+.--                              ......+++..++ .+|.  .-++-++|.+.||.+++.
T Consensus       415 ~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~K-OGGKpAdvYliDEpsAylDSeQRi  493 (592)
T KOG0063|consen  415 REGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALAL-CLGKPADVYLIDEPSAYLDSEQRI  493 (592)
T ss_pred             ccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHH-hcCCCCceEEecCchhhcChHHHH
Confidence            223444332100                              0001112222222 1222  235678899999999988


Q ss_pred             HHHHHHHHh--cCCcEEEEEecCchhhhc-CCeEEEEeC
Q psy10472        131 LVQAALESA--CKGRTVLMIAHRLSTVQN-ADLIVVLQA  166 (181)
Q Consensus       131 ~i~~~l~~~--~~~~tii~vtHd~~~~~~-~d~v~~l~~  166 (181)
                      ..-..+++.  +..+|-.+|.||.-.+.+ +|||++.+.
T Consensus       494 ~AskvikRfilhakktafvVEhdfImaTYladrvivf~G  532 (592)
T KOG0063|consen  494 IASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG  532 (592)
T ss_pred             HHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence            777777663  457899999999999977 999999864

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.13  E-value=6.6e-10  Score=87.13  Aligned_cols=138  Identities=14%  Similarity=0.163  Sum_probs=79.5

Q ss_pred             EecCCcEEEEECCCCCcHHHH-HHHHhcCCCCCcceEEECCEECCCCChhhhcc--CcEEEEccCCCCccccHHHHhhc-
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTI-VALLERFYDVSSGNITISGVDLKHLDGTWLRG--NVIGLINQEPVLFATSVRENIRY-   93 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTL-l~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~--~~i~~v~q~~~l~~~tv~enl~~-   93 (181)
                      -+++|+++.|.|+|||||||| +++++++.++....+++....    ++.++.+  ..+|+-.+...     ...++.+ 
T Consensus        20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----~~~~~~~~~~~~g~~~~~~~-----~~~~l~~~   90 (230)
T PRK08533         20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----TTTEFIKQMMSLGYDINKKL-----ISGKLLYI   90 (230)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----CHHHHHHHHHHhCCchHHHh-----hcCcEEEE
Confidence            478999999999999999999 799999887776777776432    1111111  11333221110     0001110 


Q ss_pred             --CCCCCC----HHHHHHHHHHh---ccccccccCCCCCC----CHHHHHHHHHHHHHhc-CCcEEEEEecCchh-----
Q psy10472         94 --GDSSVS----DEQIEEAAKLA---NAHGFISEFPSGAL----DNESEKLVQAALESAC-KGRTVLMIAHRLST-----  154 (181)
Q Consensus        94 --~~~~~~----~~~~~~~~~~~---~~~~~~~~~P~~~L----D~~~~~~i~~~l~~~~-~~~tii~vtHd~~~-----  154 (181)
                        ......    ...+..+++..   +..-++-|+|++.+    |+...+.+.+.++.++ .|.|+++ ||+...     
T Consensus        91 ~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~  169 (230)
T PRK08533         91 PVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESV  169 (230)
T ss_pred             EecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-Eeccccccccc
Confidence              000001    12223333332   33446778899888    7777788888888764 4776555 565443     


Q ss_pred             ---hhc-CCeEEEEe
Q psy10472        155 ---VQN-ADLIVVLQ  165 (181)
Q Consensus       155 ---~~~-~d~v~~l~  165 (181)
                         +.. ||-|+.|+
T Consensus       170 ~~~~~~~~DgvI~L~  184 (230)
T PRK08533        170 LTILRTAATMLIRLE  184 (230)
T ss_pred             ceeEEEeeeEEEEEE
Confidence               233 68888886

>KOG0066|consensus

Probab=99.13  E-value=2.8e-11  Score=101.33  Aligned_cols=164  Identities=16%  Similarity=0.243  Sum_probs=99.7

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC--CCCCcceEEECCEECCCCChhh----hc--cCcEEEEccCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--YDVSSGNITISGVDLKHLDGTW----LR--GNVIGLINQEP   80 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl--~~p~~G~i~i~g~~i~~~~~~~----~r--~~~i~~v~q~~   80 (181)
                      +.++.+.||.|-.|..++|+||||-||||||+.|+.-  --|..=.|.+..+.+..-+...    ++  .++..++-...
T Consensus       277 k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~  356 (807)
T KOG0066|consen  277 KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEA  356 (807)
T ss_pred             ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHH
Confidence            4578899999999999999999999999999999743  3344445666665543211100    00  00011111111


Q ss_pred             ----CCccc--cHHHHh-------h-cCCCCCCHHHHHHHHHHh------------------------------cccccc
Q psy10472         81 ----VLFAT--SVRENI-------R-YGDSSVSDEQIEEAAKLA------------------------------NAHGFI  116 (181)
Q Consensus        81 ----~l~~~--tv~enl-------~-~~~~~~~~~~~~~~~~~~------------------------------~~~~~~  116 (181)
                          .+-.+  |+.|-+       . .+.. ....+.++++.-+                              ...-+.
T Consensus       357 ~L~~q~e~Gd~taaErl~~v~~ELraiGA~-sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLM  435 (807)
T KOG0066|consen  357 KLMSQIEEGDTTAAERLKEVADELRAIGAD-SAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLM  435 (807)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHHHhccc-cchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeee
Confidence                01111  333322       1 1111 1112222222211                              112245


Q ss_pred             ccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472        117 SEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ  175 (181)
Q Consensus       117 ~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~  175 (181)
                      .++||+.||......+-..|.-+  .+|+++||||..++.. |..|+.|++-++..+.+.
T Consensus       436 LDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGN  493 (807)
T KOG0066|consen  436 LDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGN  493 (807)
T ss_pred             ecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhhhcch
Confidence            67899999998887777777666  3799999999999976 999999999888665543

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=99.10  E-value=1e-10  Score=99.11  Aligned_cols=159  Identities=21%  Similarity=0.208  Sum_probs=94.1

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEEC---CEECCCCChh---hhccCcEEEEccCCCC-
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS---GVDLKHLDGT---WLRGNVIGLINQEPVL-   82 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~---g~~i~~~~~~---~~r~~~i~~v~q~~~l-   82 (181)
                      .+++.++ .|.+|++++|+||||||||||+++|+++.+|+.|.|.+.   |.++..+...   ..|++.|++++|.... 
T Consensus       154 ~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~  232 (450)
T PRK06002        154 RVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESP  232 (450)
T ss_pred             EEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCH
Confidence            4677775 899999999999999999999999999999999998885   4555443221   2344569999997531 


Q ss_pred             -------ccc-cHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCCC-CCCHHHHHHHHHHHHHh----c-CC-
Q psy10472         83 -------FAT-SVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPSG-ALDNESEKLVQAALESA----C-KG-  142 (181)
Q Consensus        83 -------~~~-tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~~-~LD~~~~~~i~~~l~~~----~-~~-  142 (181)
                             +.. |+.|++.--...     .+-.+...+.+...+  ...+.|.. +--+..-..+-.++++.    . .| 
T Consensus       233 ~~r~~~~~~a~~iAEyfrd~G~~Vll~~DslTr~A~A~rEisl--~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GS  310 (450)
T PRK06002        233 MMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVAL--AAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGS  310 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHHH--hcCCCCccccCCccHHHHhhHHHHHhccCCCCCee
Confidence                   222 667776532111     123344445444333  22344433 34343333444444432    1 23 


Q ss_pred             cEEEEEec-Cchhh-hc-CCeEEEEeCCeEEe
Q psy10472        143 RTVLMIAH-RLSTV-QN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       143 ~tii~vtH-d~~~~-~~-~d~v~~l~~G~i~~  171 (181)
                      .|.+.+.. +-+.+ .. +|.+.-+-||+|+-
T Consensus       311 IT~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivL  342 (450)
T PRK06002        311 ITGIFSVLVDGDDHNDPVADSIRGTLDGHIVL  342 (450)
T ss_pred             eeEEEEEEecCCCCCCccHHHHHhhcceEEEE
Confidence            45555432 22222 22 56666667777764

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.10  E-value=7.8e-11  Score=88.77  Aligned_cols=67  Identities=22%  Similarity=0.291  Sum_probs=48.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhhc
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIRY   93 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~~   93 (181)
                      +|++++|+|+||||||||+++|++++.+    +.++|.++...  ...++...++.+|+...++. ++..|+.+
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~~~~~~~~~~~~~~~   69 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDEDRLPWLERLNDASY   69 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence            5899999999999999999999999887    58899877432  22232235677777554443 66666644

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.00  E-value=6.1e-10  Score=84.46  Aligned_cols=55  Identities=22%  Similarity=0.305  Sum_probs=42.6

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP   80 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~   80 (181)
                      |++++|+||||||||||+++|++...|   .+.+.+..+........+. .+++++|++
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   56 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSEN-HIALSEQEF   56 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHh-heeEcHHHH
Confidence            789999999999999999999999876   5888887776543333332 478888874

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.00  E-value=2.5e-09  Score=84.77  Aligned_cols=153  Identities=18%  Similarity=0.151  Sum_probs=83.3

Q ss_pred             EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEE--ECCEECCCCChhhhccCc--E--EEEccCCCCc------c
Q psy10472         17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNIT--ISGVDLKHLDGTWLRGNV--I--GLINQEPVLF------A   84 (181)
Q Consensus        17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~--i~g~~i~~~~~~~~r~~~--i--~~v~q~~~l~------~   84 (181)
                      +.+..|+.++|+||+|+|||||++.++.......+++.  +....-...+..++.+..  +  .--++.+...      .
T Consensus        11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~   90 (249)
T cd01128          11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEM   90 (249)
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHH
Confidence            47889999999999999999999999998877543332  221110112233322221  1  1112222111      0


Q ss_pred             c-cHHHHhhc-CCC-------------------------C-CCH-----HHHHHHHHHhcc---ccccccCCCCCCCHHH
Q psy10472         85 T-SVRENIRY-GDS-------------------------S-VSD-----EQIEEAAKLANA---HGFISEFPSGALDNES  128 (181)
Q Consensus        85 ~-tv~enl~~-~~~-------------------------~-~~~-----~~~~~~~~~~~~---~~~~~~~P~~~LD~~~  128 (181)
                      . +..++... +..                         . ...     ....+.++..+.   .+-+.-.||..+|..+
T Consensus        91 ~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~~d~~~  170 (249)
T cd01128          91 VLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATALVDTGS  170 (249)
T ss_pred             HHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeeheecCCC
Confidence            1 22222211 100                         0 000     001122222221   1222223788999654


Q ss_pred             HHH-HHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472        129 EKL-VQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVE  171 (181)
Q Consensus       129 ~~~-i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~  171 (181)
                      ... +.  +.... .+.|.|++||++.....+|.|.+|+.|.+.+
T Consensus       171 ~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~  213 (249)
T cd01128         171 RMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKE  213 (249)
T ss_pred             cccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccc
Confidence            432 33  34443 4789999999999999999999999998754

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK00064 recF recombination protein F; Reviewed

Probab=98.97  E-value=1.1e-08  Score=85.22  Aligned_cols=48  Identities=19%  Similarity=0.338  Sum_probs=39.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc---CCeEEEEeCCeE
Q psy10472        120 PSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN---ADLIVVLQAGQI  169 (181)
Q Consensus       120 P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~---~d~v~~l~~G~i  169 (181)
                      |++.||+..++.+.+.+...  +..++++||+.+.+..   .++++.+++|++
T Consensus       309 ~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~~i~~v~~G~i  359 (361)
T PRK00064        309 VASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENAKIFHVEQGKI  359 (361)
T ss_pred             chhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccCcEEEEeCCEE
Confidence            88899999999999988653  4589999999876643   458999999987

>PRK08149 ATP synthase SpaL; Validated

Probab=98.96  E-value=8.8e-10  Score=93.14  Aligned_cols=159  Identities=19%  Similarity=0.213  Sum_probs=98.3

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc---ceEEECCEECCCCChhh---hccCcEEEEccCCCC-
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS---GNITISGVDLKHLDGTW---LRGNVIGLINQEPVL-   82 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~---G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l-   82 (181)
                      .+++++ +++.+||+++|+|+||+|||||+++|+++..++.   |.|-.+|.++..+....   .+.+++++|+....- 
T Consensus       140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p  218 (428)
T PRK08149        140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFS  218 (428)
T ss_pred             EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCC
Confidence            589999 9999999999999999999999999999999987   88999998876543322   122347888875421 


Q ss_pred             --------cc-ccHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCC-CCCCHHHHHHHHHHHHHh---cCC-c
Q psy10472         83 --------FA-TSVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPS-GALDNESEKLVQAALESA---CKG-R  143 (181)
Q Consensus        83 --------~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~-~~LD~~~~~~i~~~l~~~---~~~-~  143 (181)
                              +. .|+.|++.--.+.     .+-.+...+.+...+  ...+.|. .+-.+..-..+-.++++.   ..| .
T Consensus       219 ~~~r~~a~~~a~tiAE~fr~~G~~Vll~~DslTr~A~A~rEi~l--~~ge~P~~~Gyp~~vfs~l~~l~ERag~~~~GSI  296 (428)
T PRK08149        219 SVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVAL--AAGELPARRGYPASVFDSLPRLLERPGATLAGSI  296 (428)
T ss_pred             HHHHHhHHHHHHHHHHHHHHcCCCEEEEccchHHHHHHHHHhHh--hcCCCCcccccCccHHHHHHHHHHhccCCCCCCc
Confidence                    12 2566666432111     122333444444332  2334455 355555444455555543   234 4


Q ss_pred             EEEEEec-Cchhh-hc-CCeEEEEeCCeEEe
Q psy10472        144 TVLMIAH-RLSTV-QN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       144 tii~vtH-d~~~~-~~-~d~v~~l~~G~i~~  171 (181)
                      |.+.+-. +-+.+ .. +|.+.-+-||+|+-
T Consensus       297 T~~~tVl~~~dD~~dpi~d~~~~ilDg~ivL  327 (428)
T PRK08149        297 TAFYTVLLESEEEPDPIGDEIRSILDGHIYL  327 (428)
T ss_pred             eEEEEEEecCCCCCCCchhhhheeccEEEEE
Confidence            5554433 11222 22 67777778888864

>PRK13695 putative NTPase; Provisional

Probab=98.92  E-value=2.3e-09  Score=80.34  Aligned_cols=55  Identities=20%  Similarity=0.143  Sum_probs=37.8

Q ss_pred             ccccCC--CCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        115 FISEFP--SGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       115 ~~~~~P--~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      ++-|+|  +..+|+...+.+.+++   ..+.++|+|+|+......+|++..+.+|++.+.
T Consensus       100 lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~  156 (174)
T PRK13695        100 IIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPGGRVYEL  156 (174)
T ss_pred             EEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCCcEEEEE
Confidence            556664  3444544444444333   347899999999655556999999999999874

>PRK01889 GTPase RsgA; Reviewed

Probab=98.92  E-value=1.9e-09  Score=89.68  Aligned_cols=78  Identities=23%  Similarity=0.240  Sum_probs=59.9

Q ss_pred             ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhh
Q psy10472         13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIR   92 (181)
Q Consensus        13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~   92 (181)
                      +.+.-.+++|++++++|+||+|||||++.|+|...|..|+|.+++..-..   .. +...+.+++|+..++......++.
T Consensus       186 ~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt-~~~~l~~l~~~~~l~DtpG~~~~~  261 (356)
T PRK01889        186 DVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TT-THRELHPLPSGGLLIDTPGMRELQ  261 (356)
T ss_pred             HHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hh-hhccEEEecCCCeecCCCchhhhc
Confidence            33444567899999999999999999999999999999999998743221   11 223488999988888766666666


Q ss_pred             cC
Q psy10472         93 YG   94 (181)
Q Consensus        93 ~~   94 (181)
                      +.
T Consensus       262 l~  263 (356)
T PRK01889        262 LW  263 (356)
T ss_pred             cc
Confidence            54

>TIGR00235 udk uridine kinase

Probab=98.91  E-value=7.8e-10  Score=85.21  Aligned_cols=70  Identities=19%  Similarity=0.150  Sum_probs=43.5

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCC-CcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHh
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDV-SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENI   91 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl   91 (181)
                      ++|++++|+||||||||||++.|++++++ ..+.+..++.-. .......+. ..++.+|.+..|+. .+.+.|
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l   75 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYK-DQSHLEMAE-RKKTNFDHPDAFDNDLLYEHL   75 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccccc-ChhhCCHHH-hcCCCCCCccHhHHHHHHHHH
Confidence            57999999999999999999999999876 223333333111 111111122 25677887766654 444444

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.90  E-value=1.4e-08  Score=74.06  Aligned_cols=36  Identities=19%  Similarity=0.425  Sum_probs=30.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD   59 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~   59 (181)
                      +++|.||||+|||||++.+++...+..|.+.+.+.+
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e   36 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE   36 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence            378999999999999999999988877877765543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.89  E-value=4.9e-09  Score=78.75  Aligned_cols=66  Identities=21%  Similarity=0.246  Sum_probs=46.3

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE-----------CCEECCCCChhhh----ccCcEEEEccCCCCccc-
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI-----------SGVDLKHLDGTWL----RGNVIGLINQEPVLFAT-   85 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i-----------~g~~i~~~~~~~~----r~~~i~~v~q~~~l~~~-   85 (181)
                      |++++|+||||||||||++.|++.+.+. |.+.+           +|.+....+...+    +.+.++.++|.+..+.+ 
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   79 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGI   79 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccC
Confidence            6789999999999999999999987654 55544           4555444443332    23348889998777655 


Q ss_pred             cHH
Q psy10472         86 SVR   88 (181)
Q Consensus        86 tv~   88 (181)
                      ++.
T Consensus        80 ~~~   82 (179)
T TIGR02322        80 PAE   82 (179)
T ss_pred             hHH
Confidence            443

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.88  E-value=5.3e-09  Score=94.79  Aligned_cols=136  Identities=13%  Similarity=0.069  Sum_probs=73.9

Q ss_pred             eeeEEecC-CcEEEEECCCCCcHHHHHHHHhcC-CCCCcce-EEECCEECCCCChhhhccCcEEEEccCCCCc--cccHH
Q psy10472         14 DFNLRIPA-GQKVAIVGSSGNGKSTIVALLERF-YDVSSGN-ITISGVDLKHLDGTWLRGNVIGLINQEPVLF--ATSVR   88 (181)
Q Consensus        14 ~isl~i~~-Ge~~~liG~nGsGKSTLl~~l~gl-~~p~~G~-i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~--~~tv~   88 (181)
                      ..++.+.. +.++.|.|||++||||+||.++.. +-+..|. |-...           . ..++++.+-..-+  ..++.
T Consensus       318 pndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~-----------~-~~i~~~~~i~~~ig~~~si~  385 (782)
T PRK00409        318 PKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANE-----------P-SEIPVFKEIFADIGDEQSIE  385 (782)
T ss_pred             CceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCC-----------C-ccccccceEEEecCCccchh
Confidence            34555654 467999999999999999999643 1122221 00000           0 0022211111001  11233


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHh-ccccccccCCCCCCCHHHHHHHHH-HHHHhc-CCcEEEEEecCchhhhc-CCeEEE
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQA-ALESAC-KGRTVLMIAHRLSTVQN-ADLIVV  163 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~LD~~~~~~i~~-~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~  163 (181)
                      .++....  ....+...++..+ .-.-++.|+|++++|+.....+.. ++..+. .+.++|++||+.+.... +++..+
T Consensus       386 ~~lStfS--~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v  462 (782)
T PRK00409        386 QSLSTFS--GHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGV  462 (782)
T ss_pred             hchhHHH--HHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe
Confidence            2222110  1122233334333 223456899999999998777754 555543 58999999999988765 554443

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.87  E-value=1.7e-09  Score=67.38  Aligned_cols=39  Identities=21%  Similarity=0.382  Sum_probs=32.4

Q ss_pred             cceeeEEecC-CcEEEEECCCCCcHHHHHHHHhcCCCCCc
Q psy10472         12 LKDFNLRIPA-GQKVAIVGSSGNGKSTIVALLERFYDVSS   50 (181)
Q Consensus        12 l~~isl~i~~-Ge~~~liG~nGsGKSTLl~~l~gl~~p~~   50 (181)
                      +++.++++.+ |+++.|.|||||||||||.++.-++-|..
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~   51 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT   51 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence            4567788886 56999999999999999999987776654

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.87  E-value=2.9e-09  Score=90.38  Aligned_cols=158  Identities=22%  Similarity=0.308  Sum_probs=89.7

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-CcceEEEC---CEECCCCChhhhc--cCcEEEE-----cc
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-SSGNITIS---GVDLKHLDGTWLR--GNVIGLI-----NQ   78 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-~~G~i~i~---g~~i~~~~~~~~r--~~~i~~v-----~q   78 (181)
                      .+++++ |++.+|++++|+|+||||||||+++|+++.++ +.|.|.+.   |+++..+....++  ....+++     +|
T Consensus       153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q  231 (442)
T PRK06315        153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ  231 (442)
T ss_pred             EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence            477777 99999999999999999999999999999854 44666664   4555433322222  1224566     88


Q ss_pred             CCCC-----c-cccHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCC-CCCCHHHHHHHHHHHHHh---cCC-
Q psy10472         79 EPVL-----F-ATSVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPS-GALDNESEKLVQAALESA---CKG-  142 (181)
Q Consensus        79 ~~~l-----~-~~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~-~~LD~~~~~~i~~~l~~~---~~~-  142 (181)
                      +|..     + ..++.|.+......     .+..+..++++.+++.  ..+.|. .+--|..-..+-.++++.   .+| 
T Consensus       232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~--~gepp~~~gypP~~fS~l~~llERag~~~~GS  309 (442)
T PRK06315        232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA--AGEPPARAGYTPSVFSTLPKLLERSGASDKGT  309 (442)
T ss_pred             CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC--CCCCccccCCCCchhhHhHHHHHHhcCCCCcc
Confidence            8731     1 12677777543221     1234555666666552  111121 112222233344444432   234 


Q ss_pred             cE----EEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472        143 RT----VLMIAHRLSTVQNADLIVVLQAGQIVE  171 (181)
Q Consensus       143 ~t----ii~vtHd~~~~~~~d~v~~l~~G~i~~  171 (181)
                      .|    |.+..+|+... .+|.+.-+-+|+++-
T Consensus       310 ITai~tVl~~gdD~~dp-i~d~~~~i~dg~ivL  341 (442)
T PRK06315        310 ITAFYTVLVAGDDMNEP-VADEVKSILDGHIVL  341 (442)
T ss_pred             eeeeEEEEecCCCCCcc-cHHHhhhhcceEEEE
Confidence            33    33333444321 267777777888875

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.82  E-value=4.1e-09  Score=86.39  Aligned_cols=74  Identities=18%  Similarity=0.193  Sum_probs=54.9

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC----h-hhhccCcEEEEccCCCCccc-cHHHHhhc
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD----G-TWLRGNVIGLINQEPVLFAT-SVRENIRY   93 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~----~-~~~r~~~i~~v~q~~~l~~~-tv~enl~~   93 (181)
                      ++|++++++|||||||||++..|++.+.+..++|.+.+.+.....    . .+..+..+.+++|.....+. ++++++..
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~  191 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA  191 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence            568999999999999999999999999998899998887754321    1 11122348899986655543 66677643

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.81  E-value=2e-08  Score=76.95  Aligned_cols=117  Identities=24%  Similarity=0.319  Sum_probs=65.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCC-cceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhcCCCCCC-HH
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDVS-SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVS-DE  101 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~~~~~~~-~~  101 (181)
                      ++.|+||+||||||+++.|++.+.+. .|.|.....++. ..    .....+++.|...            +..... .+
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~----~~~~~~~i~q~~v------------g~~~~~~~~   65 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FV----HESKRSLINQREV------------GLDTLSFEN   65 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cc----ccCccceeeeccc------------CCCccCHHH
Confidence            78999999999999999998888644 677766554431 11    1111344444211            000000 12


Q ss_pred             HHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEE
Q psy10472        102 QIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL  164 (181)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l  164 (181)
                      .+..++.. +..-++-++|.   |++.   +...++....|..++.++|..+.....+|++.+
T Consensus        66 ~i~~aLr~-~pd~ii~gEir---d~e~---~~~~l~~a~~G~~v~~t~Ha~~~~~~~~Rl~~l  121 (198)
T cd01131          66 ALKAALRQ-DPDVILVGEMR---DLET---IRLALTAAETGHLVMSTLHTNSAAKTIDRIIDV  121 (198)
T ss_pred             HHHHHhcC-CcCEEEEcCCC---CHHH---HHHHHHHHHcCCEEEEEecCCcHHHHHhHHHhh
Confidence            22333332 33344455553   4443   333343334578899999988766556776555

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.80  E-value=7e-09  Score=85.00  Aligned_cols=159  Identities=20%  Similarity=0.239  Sum_probs=92.2

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE---CCCCChhhh----ccCcEEEEccC--C
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD---LKHLDGTWL----RGNVIGLINQE--P   80 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~---i~~~~~~~~----r~~~i~~v~q~--~   80 (181)
                      .+++.+ |.+.+|++++|+|+||+|||||+++|+|+..|+.|.+..-|+.   +..+.....    ..+.+-++.+.  |
T Consensus        58 ~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~  136 (326)
T cd01136          58 RAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDES  136 (326)
T ss_pred             EEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCC
Confidence            578889 9999999999999999999999999999999999888776643   222111111    11223333332  2


Q ss_pred             C------Cccc-cHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCC-CCCCCHHHHHHHHHHHHHhc---CC-c
Q psy10472         81 V------LFAT-SVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFP-SGALDNESEKLVQAALESAC---KG-R  143 (181)
Q Consensus        81 ~------l~~~-tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P-~~~LD~~~~~~i~~~l~~~~---~~-~  143 (181)
                      .      .+-. |+.|++.--.+.     .+-.+..++.+.+.+  ...+.| ..+.++..-..+-.++.+..   .| .
T Consensus       137 ~~~r~~~~~~a~~~AEyfr~~g~~Vll~~Dsltr~a~A~rei~~--~~ge~p~~~gyp~~~~~~~~~l~ERag~~~~GSI  214 (326)
T cd01136         137 PLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIGL--AAGEPPTTKGYPPSVFALLPRLLERAGNSDKGSI  214 (326)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHHHH--hcCCCCCcCCcChHHHHHhHHHHHHhcCCCCCCe
Confidence            1      1112 556665421111     122233344443322  223445 45777777666666666532   34 4


Q ss_pred             EEEEEec-Cchhhh-c-CCeEEEEeCCeEEe
Q psy10472        144 TVLMIAH-RLSTVQ-N-ADLIVVLQAGQIVE  171 (181)
Q Consensus       144 tii~vtH-d~~~~~-~-~d~v~~l~~G~i~~  171 (181)
                      |.|.+.. +-+.+. . +|.+.-+-||+++-
T Consensus       215 T~i~tv~~~gdd~~dpi~~~~~~~~dg~ivL  245 (326)
T cd01136         215 TAFYTVLVEGDDLNEPIADAVRSILDGHIVL  245 (326)
T ss_pred             eeeeeeeecCCCCCcchHHhhhhccceEEEE
Confidence            6665443 112221 2 56777777888765

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.77  E-value=8.1e-09  Score=80.80  Aligned_cols=34  Identities=29%  Similarity=0.394  Sum_probs=31.4

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI   53 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i   53 (181)
                      .+..+++|.||||||||||+++|++++++..|.+
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~   64 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP   64 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence            4567999999999999999999999999999983

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.77  E-value=6.5e-09  Score=84.04  Aligned_cols=68  Identities=16%  Similarity=0.167  Sum_probs=45.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCC--CCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccHHHHh
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYD--VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSVRENI   91 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~--p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv~enl   91 (181)
                      .-.++||.||||||||||+++|.+++.  |.+|.|.+-+.+-...+..... + .++. |+..+++ .++.+.+
T Consensus        61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~-~-~g~~-~~~g~P~s~D~~~l~  131 (290)
T TIGR00554        61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLK-E-RNLM-KKKGFPESYDMHRLV  131 (290)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHH-H-cCCc-cccCCChhccHHHHH
Confidence            446999999999999999999999987  7889887766554433333222 2 4443 5444332 2444443

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR00416 sms DNA repair protein RadA

Probab=98.75  E-value=2.5e-08  Score=85.46  Aligned_cols=136  Identities=18%  Similarity=0.252  Sum_probs=74.4

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcce-EEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhcCCCC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGN-ITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSS   97 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~-i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~~~~~   97 (181)
                      +.+|+++.|.|++|+|||||+..++.......+. +++.+++-.  .....|..++++.+++..++..            
T Consensus        91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~--~qi~~ra~rlg~~~~~l~~~~e------------  156 (454)
T TIGR00416        91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESL--QQIKMRAIRLGLPEPNLYVLSE------------  156 (454)
T ss_pred             ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCH--HHHHHHHHHcCCChHHeEEcCC------------
Confidence            7889999999999999999999998766555454 577775421  1111222235544433222221            


Q ss_pred             CCHHHHHHHHHHhcccccccc-CC---CCCC-----CHHHHHHHHHHHHHh-c-CCcEEEEEecCchh--------hhc-
Q psy10472         98 VSDEQIEEAAKLANAHGFISE-FP---SGAL-----DNESEKLVQAALESA-C-KGRTVLMIAHRLST--------VQN-  157 (181)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~-~P---~~~L-----D~~~~~~i~~~l~~~-~-~~~tii~vtHd~~~--------~~~-  157 (181)
                      ...+.+...++..+..-++-| .-   ...+     +....+++...|.++ + .|.|+++++|....        +.. 
T Consensus       157 ~~~~~I~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~l  236 (454)
T TIGR00416       157 TNWEQICANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHM  236 (454)
T ss_pred             CCHHHHHHHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeee
Confidence            122333333333332211111 10   0111     122233444444443 3 48999999996543        445 


Q ss_pred             CCeEEEEeCCe
Q psy10472        158 ADLIVVLQAGQ  168 (181)
Q Consensus       158 ~d~v~~l~~G~  168 (181)
                      +|.|+.|+.++
T Consensus       237 vD~VI~Le~~~  247 (454)
T TIGR00416       237 VDTVLYFEGDR  247 (454)
T ss_pred             ceEEEEEeccC
Confidence            89999998654

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=98.74  E-value=8.9e-09  Score=87.37  Aligned_cols=62  Identities=26%  Similarity=0.460  Sum_probs=50.5

Q ss_pred             EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc---ceEEECCEECCCC----ChhhhccCcEEEEccCC
Q psy10472         17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS---GNITISGVDLKHL----DGTWLRGNVIGLINQEP   80 (181)
Q Consensus        17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~---G~i~i~g~~i~~~----~~~~~r~~~i~~v~q~~   80 (181)
                      |++.+|++++|+|+||+|||||+++|+++.+|+.   |.|-+.|.++...    .....+  ..++|+|+.
T Consensus       170 l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~--~~tvVv~~~  238 (455)
T PRK07960        170 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGR--ARSVVIAAP  238 (455)
T ss_pred             ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCC--ceEEEEEEC
Confidence            9999999999999999999999999999999986   8999999987542    111112  267888865

>PLN02796 D-glycerate 3-kinase

Probab=98.73  E-value=3.7e-09  Score=86.88  Aligned_cols=53  Identities=19%  Similarity=0.340  Sum_probs=44.6

Q ss_pred             cccceeeEEe---cCCcE-----EEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCEECCC
Q psy10472         10 TILKDFNLRI---PAGQK-----VAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVDLKH   62 (181)
Q Consensus        10 ~vl~~isl~i---~~Ge~-----~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g~~i~~   62 (181)
                      .+++.+++.+   ++|+.     ++|+|+||||||||++.|.+++.+.   .|.|.++|..+..
T Consensus        80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~  143 (347)
T PLN02796         80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTA  143 (347)
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccch
Confidence            3677888777   56776     9999999999999999999999875   6889999977644

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.73  E-value=1.1e-08  Score=86.60  Aligned_cols=50  Identities=28%  Similarity=0.382  Sum_probs=45.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD   59 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~   59 (181)
                      ..+++++ |++.+|++++|+|+||+|||||+++|+++..|+.|.+.+.|+.
T Consensus       143 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR  192 (433)
T PRK07594        143 IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192 (433)
T ss_pred             ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence            3588999 9999999999999999999999999999999999988877754

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.73  E-value=1.6e-08  Score=85.88  Aligned_cols=50  Identities=24%  Similarity=0.436  Sum_probs=46.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD   59 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~   59 (181)
                      ..+++++ +++.+|++++|+|+||+|||||+++++++..++.|.|.+.|+.
T Consensus       151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer  200 (441)
T PRK09099        151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER  200 (441)
T ss_pred             ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence            3589999 9999999999999999999999999999999999999888854

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.72  E-value=9.4e-09  Score=88.75  Aligned_cols=55  Identities=11%  Similarity=0.289  Sum_probs=49.8

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH   62 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~   62 (181)
                      ...+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.+....+..
T Consensus       196 q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s  250 (506)
T PRK09862        196 QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILS  250 (506)
T ss_pred             cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhh
Confidence            3458889999999999999999999999999999999999999999998876643

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.72  E-value=1.7e-08  Score=85.37  Aligned_cols=158  Identities=21%  Similarity=0.195  Sum_probs=90.5

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh-------hhccCcEEEEccC--CC
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT-------WLRGNVIGLINQE--PV   81 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~-------~~r~~~i~~v~q~--~~   81 (181)
                      ++ |.+|++.+|++++|+|+||+|||||+++|+++.+|+.|.|.+.|+.-......       ....+.+-++.+.  |.
T Consensus       130 ai-D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~  208 (418)
T TIGR03498       130 VI-DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESP  208 (418)
T ss_pred             EE-eeeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCH
Confidence            45 46999999999999999999999999999999999999998888754332210       0112223333332  21


Q ss_pred             ------Cccc-cHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCCC-CCCHHHHHHHHHHHHHh----c-CC-
Q psy10472         82 ------LFAT-SVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPSG-ALDNESEKLVQAALESA----C-KG-  142 (181)
Q Consensus        82 ------l~~~-tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~~-~LD~~~~~~i~~~l~~~----~-~~-  142 (181)
                            .+.. |+.|++.--...     .+-.+...+.+.+.+  ...+.|.. +-.+..-..+-.++++.    . .| 
T Consensus       209 ~~r~~a~~~a~~iAEyfrd~G~~Vll~~DslTr~A~A~REisl--~~gepP~~~gyp~~vf~~l~~L~ERag~~~~~~GS  286 (418)
T TIGR03498       209 LMRRQAAYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGL--AAGEPPVARGYTPSVFSELPRLLERAGPGAEGKGS  286 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHH--hcCCCCccccCCchhhhhhhHHHHHhccCCCCCcc
Confidence                  1222 567776432111     122334444444332  12334442 44444444455555442    1 23 


Q ss_pred             cEEEEEec-Cchhh-hc-CCeEEEEeCCeEEe
Q psy10472        143 RTVLMIAH-RLSTV-QN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       143 ~tii~vtH-d~~~~-~~-~d~v~~l~~G~i~~  171 (181)
                      .|.+.+-. +-+.+ .. +|.+.-+-||+|+-
T Consensus       287 IT~~~tVl~~gdd~~dpi~d~~~si~DG~ivL  318 (418)
T TIGR03498       287 ITGIFTVLVDGDDHNEPVADAVRGILDGHIVL  318 (418)
T ss_pred             eeeeEEEeccCCCCCCcchhhhheeeeeEEEE
Confidence            45554433 22223 23 78888888898875

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.71  E-value=2.3e-08  Score=77.99  Aligned_cols=41  Identities=24%  Similarity=0.323  Sum_probs=31.4

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHh-cCCCCCcceEEECCE
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLE-RFYDVSSGNITISGV   58 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~-gl~~p~~G~i~i~g~   58 (181)
                      =+++|++++|.||+|||||||...++ ....+..+.+++...
T Consensus        16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e   57 (229)
T TIGR03881        16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE   57 (229)
T ss_pred             CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            48899999999999999999988654 233455566777653

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.70  E-value=1.6e-08  Score=85.77  Aligned_cols=160  Identities=21%  Similarity=0.217  Sum_probs=90.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---hhhc--cCcEEEEccCCCCc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWLR--GNVIGLINQEPVLF   83 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~~~r--~~~i~~v~q~~~l~   83 (181)
                      ..+++++ |.+.+|++++|+|+||+|||||+++|+++..|+.|.+...|+.-.....   ....  ...-+++++++..+
T Consensus       133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~  211 (422)
T TIGR02546       133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDR  211 (422)
T ss_pred             ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccC
Confidence            3589999 9999999999999999999999999999999999998886554322211   0000  01146777776544


Q ss_pred             cc-----------cHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCC-CCCCHHHHHHHHHHHHHhc---CC-
Q psy10472         84 AT-----------SVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPS-GALDNESEKLVQAALESAC---KG-  142 (181)
Q Consensus        84 ~~-----------tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~-~~LD~~~~~~i~~~l~~~~---~~-  142 (181)
                      +.           ++.|.+.--...     .+-.+..++.+...+  ...+.|. .+-.+..-..+-+++++..   .| 
T Consensus       212 p~~~r~~~~~~a~~~AE~f~~~g~~Vl~~~Dsltr~a~A~rei~l--~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~GS  289 (422)
T TIGR02546       212 PSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLTRFARALREIGL--AAGEPPARGGYPPSVFSSLPRLLERAGNGEKGS  289 (422)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCchHHHHHHHHHHH--hcCCCCcccccChhHHHHhHHHHHHhcCCCCCc
Confidence            32           222332211000     112223333333322  1223443 2444554455555555432   24 


Q ss_pred             cEEEEE-ecCchhhh-c-CCeEEEEeCCeEEe
Q psy10472        143 RTVLMI-AHRLSTVQ-N-ADLIVVLQAGQIVE  171 (181)
Q Consensus       143 ~tii~v-tHd~~~~~-~-~d~v~~l~~G~i~~  171 (181)
                      .|.|.+ +.+-+.+. . +|.+.-+-+|.++-
T Consensus       290 IT~~~tv~~~~dd~~~pi~~~~~~i~dg~i~L  321 (422)
T TIGR02546       290 ITALYTVLVEGDDMNDPIADEVRSILDGHIVL  321 (422)
T ss_pred             eeEEEEEeccCCCCCCCchhhhhccccEEEEE
Confidence            344433 33333332 2 67777777888764

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.69  E-value=5.1e-08  Score=75.26  Aligned_cols=38  Identities=32%  Similarity=0.460  Sum_probs=30.3

Q ss_pred             EEEEECCCCCcHHHHH-HHHhcCCCC-----------------CcceEEECCEECC
Q psy10472         24 KVAIVGSSGNGKSTIV-ALLERFYDV-----------------SSGNITISGVDLK   61 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl-~~l~gl~~p-----------------~~G~i~i~g~~i~   61 (181)
                      .++|+|+||||||||+ +.+.|..++                 +.|.+.+...+..
T Consensus        11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~   66 (215)
T PTZ00132         11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTA   66 (215)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECC
Confidence            5899999999999999 688888754                 4577777766653

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.68  E-value=7.3e-08  Score=88.71  Aligned_cols=57  Identities=25%  Similarity=0.444  Sum_probs=51.8

Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEe
Q psy10472        115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVE  171 (181)
Q Consensus       115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~  171 (181)
                      ++.|+||++||+.....+.++|++++ +|.|||+|+|+++++..||+|++|      ++|+++.
T Consensus       513 lILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~  576 (943)
T PRK00349        513 YVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVA  576 (943)
T ss_pred             EEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEee
Confidence            45678999999999999999999875 589999999999998779999999      8999987

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=98.66  E-value=3.6e-08  Score=83.32  Aligned_cols=158  Identities=22%  Similarity=0.256  Sum_probs=94.3

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC--------hhhhccCcEEEEccCCC
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD--------GTWLRGNVIGLINQEPV   81 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~--------~~~~r~~~i~~v~q~~~   81 (181)
                      .+++++ |.+.+|++++|+|+||+|||||+++|++..+++.|.|.+.|+......        ...+ ++.+.++.+...
T Consensus       126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~-~~~v~v~~tsd~  203 (413)
T TIGR03497       126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGL-KRSVVVVATSDQ  203 (413)
T ss_pred             eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHhccccc-ceEEEEEECCCC
Confidence            578888 999999999999999999999999999999999999888886543221        1111 223555554321


Q ss_pred             --------Ccc-ccHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCCC-CCCHHHHHHHHHHHHHhc---CC-
Q psy10472         82 --------LFA-TSVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPSG-ALDNESEKLVQAALESAC---KG-  142 (181)
Q Consensus        82 --------l~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~~-~LD~~~~~~i~~~l~~~~---~~-  142 (181)
                              .+. .|+.|++.--...     .+-.+..+|.+.+.+  ...+.|.. +..+..-..+-.++.+..   .| 
T Consensus       204 ~~~~r~~~~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~rEisl--~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~GS  281 (413)
T TIGR03497       204 PALMRLKAAFTATAIAEYFRDQGKDVLLMMDSVTRFAMAQREIGL--AVGEPPTTRGYTPSVFSLLPKLLERSGNSQKGS  281 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEcCcHHHHHHHHHHHH--hcCCCCCCCCcCchHHHHhHHHHHHhcCCCCcc
Confidence                    122 2666766422111     122334444444332  23345554 566655555555565532   24 


Q ss_pred             cEEEEEec-Cchhh-hc-CCeEEEEeCCeEEe
Q psy10472        143 RTVLMIAH-RLSTV-QN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       143 ~tii~vtH-d~~~~-~~-~d~v~~l~~G~i~~  171 (181)
                      .|.+.+-. +-+.+ .. +|.+.-+-||.++-
T Consensus       282 IT~~~tVl~~gdD~~dpi~~~~~si~dg~ivL  313 (413)
T TIGR03497       282 ITGFYTVLVDGDDMNEPIADAVRGILDGHIVL  313 (413)
T ss_pred             eeEEEEEEccCCCCCCcchhhccccccEEEEE
Confidence            45553322 22222 22 67777777888764

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>KOG0063|consensus

Probab=98.66  E-value=2.3e-08  Score=83.66  Aligned_cols=147  Identities=21%  Similarity=0.293  Sum_probs=85.6

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE--CCEECCCC-Chhhhcc---C----------cEEEEccCCCCc
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI--SGVDLKHL-DGTWLRG---N----------VIGLINQEPVLF   83 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i--~g~~i~~~-~~~~~r~---~----------~i~~v~q~~~l~   83 (181)
                      .+|++.+++|.||-||||-+++++|-.+|.-|...-  +++++... ...++..   +          ...||-|-|-..
T Consensus        98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~  177 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV  177 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence            479999999999999999999999999998775321  00111000 0000000   0          011111111112


Q ss_pred             cccHHHHhhcCCCCCCHHHHHHHHH--------------------------HhccccccccCCCCCCCHHHHHHHHHHHH
Q psy10472         84 ATSVRENIRYGDSSVSDEQIEEAAK--------------------------LANAHGFISEFPSGALDNESEKLVQAALE  137 (181)
Q Consensus        84 ~~tv~enl~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~P~~~LD~~~~~~i~~~l~  137 (181)
                      .++|.+.+.--......+++-..++                          ....+.++.++|.+.||...+..-...++
T Consensus       178 k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IR  257 (592)
T KOG0063|consen  178 KGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIR  257 (592)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHH
Confidence            2344444422111111111111000                          00122245678999999999988888888


Q ss_pred             Hhc-CCcEEEEEecCchhhhc-CCeEEEEeC
Q psy10472        138 SAC-KGRTVLMIAHRLSTVQN-ADLIVVLQA  166 (181)
Q Consensus       138 ~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~  166 (181)
                      .+. .+.=||+|.||++.+.+ .|-+..+..
T Consensus       258 sl~~p~~YiIVVEHDLsVLDylSDFiCcLYG  288 (592)
T KOG0063|consen  258 SLINPDRYIIVVEHDLSVLDYLSDFICCLYG  288 (592)
T ss_pred             HhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence            764 57889999999999987 898888853

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.66  E-value=9.3e-08  Score=87.88  Aligned_cols=57  Identities=23%  Similarity=0.447  Sum_probs=52.0

Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEe
Q psy10472        115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVE  171 (181)
Q Consensus       115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~  171 (181)
                      ++.|+|+++||+.....+.++|+++. +|.|||+|+||++.+..||++++|      ++|+++.
T Consensus       511 lILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~~~G~Iv~  574 (924)
T TIGR00630       511 YVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVA  574 (924)
T ss_pred             EEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccCCCCEEee
Confidence            45678999999999999999999875 589999999999998889999999      8999987

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.65  E-value=1.7e-08  Score=86.58  Aligned_cols=41  Identities=27%  Similarity=0.378  Sum_probs=35.7

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG   51 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G   51 (181)
                      ++++.++.++.|.+++++||||+||||++..|++.+.+..|
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G  285 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHG  285 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcC
Confidence            45667777889999999999999999999999998766655

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.65  E-value=1.2e-08  Score=76.87  Aligned_cols=57  Identities=19%  Similarity=0.154  Sum_probs=43.7

Q ss_pred             HhccccccccCCCCCCC---HHHHHHHHHHHHHhc-CCcEEEEEecCchh---------hhc-CCeEEEEe
Q psy10472        109 LANAHGFISEFPSGALD---NESEKLVQAALESAC-KGRTVLMIAHRLST---------VQN-ADLIVVLQ  165 (181)
Q Consensus       109 ~~~~~~~~~~~P~~~LD---~~~~~~i~~~l~~~~-~~~tii~vtHd~~~---------~~~-~d~v~~l~  165 (181)
                      ..+..-++-|.|++.+|   ...+..+.++++.++ .|.|+|+++|+...         +.. ||.++.|+
T Consensus        93 ~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~  163 (187)
T cd01124          93 EFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR  163 (187)
T ss_pred             HhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence            34555577788999998   667777777777654 48999999998764         444 89999887

A related protein is found in archaea.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.65  E-value=2.8e-08  Score=86.63  Aligned_cols=61  Identities=23%  Similarity=0.316  Sum_probs=48.6

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhh
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIR   92 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~   92 (181)
                      -+++|.||||||||||++.|++++ |..|.|.++|....    .    +.+.+.||+|.+++. ++.+||.
T Consensus        66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~~----~----~~i~~nfD~P~a~D~d~L~enL~  127 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYNDS----S----RIIDGNFDDPRLTDYDTLLDNIH  127 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceecc----h----hhhCccCCChhhcchhHHHHHHH
Confidence            489999999999999999999997 67899999986411    1    125678899888865 7878873

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.63  E-value=5.9e-08  Score=80.77  Aligned_cols=89  Identities=26%  Similarity=0.296  Sum_probs=53.9

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCC--Cc-ceEEECCEECCCCChhhhccCcEEEEccCCC-----CccccHHHHh
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDV--SS-GNITISGVDLKHLDGTWLRGNVIGLINQEPV-----LFATSVRENI   91 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p--~~-G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-----l~~~tv~enl   91 (181)
                      +++..++|+||+||||||+|++|++.+.+  .. +.|.....++ .+.....+. ..+++.|...     -|...+++.+
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~-~~~~v~Q~~v~~~~~~~~~~l~~aL  209 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIET-ISASVCQSEIPRHLNNFAAGVRNAL  209 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEecccccc-ccceeeeeeccccccCHHHHHHHHh
Confidence            47899999999999999999999998843  33 3554444333 233222222 2567777532     3445677776


Q ss_pred             hcCCC------CCCHHHHHHHHHHh
Q psy10472         92 RYGDS------SVSDEQIEEAAKLA  110 (181)
Q Consensus        92 ~~~~~------~~~~~~~~~~~~~~  110 (181)
                      .....      ..+.+.+..+++.+
T Consensus       210 R~~Pd~i~vGEiRd~et~~~al~aa  234 (358)
T TIGR02524       210 RRKPHAILVGEARDAETISAALEAA  234 (358)
T ss_pred             ccCCCEEeeeeeCCHHHHHHHHHHH
Confidence            55321      12344455555553

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.62  E-value=3.7e-08  Score=79.15  Aligned_cols=55  Identities=25%  Similarity=0.386  Sum_probs=39.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV   81 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~   81 (181)
                      +++|+|+||||||||++.|++++++..|.+...+ ++....... +. ..|+.++++.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D-d~~~~~~~~-r~-~~g~~~~~p~   55 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD-DYHSLDRKG-RK-ETGITALDPR   55 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECc-ccccCCHHH-HH-Hhhccccccc
Confidence            4799999999999999999999999877665543 454433332 22 2677777653

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PTZ00035 Rad51 protein; Provisional

Probab=98.62  E-value=4.2e-08  Score=81.08  Aligned_cols=70  Identities=21%  Similarity=0.228  Sum_probs=50.7

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCCC-C-----CcceE-EECCEECCCCChhhhccCcEEEEccCCCCccccHHHHh
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFYD-V-----SSGNI-TISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENI   91 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-p-----~~G~i-~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl   91 (181)
                      |+.|+++.|.||+|||||||+..++.... |     ..|.+ +|+.+..  .++.+     +..++|.+.+.+.++.+|+
T Consensus       115 i~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~--f~~er-----i~~ia~~~g~~~~~~l~nI  187 (337)
T PTZ00035        115 IETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT--FRPER-----IVQIAERFGLDPEDVLDNI  187 (337)
T ss_pred             CCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC--CCHHH-----HHHHHHHhCCChHhHhhce
Confidence            78899999999999999999999986554 4     45666 7777643  22222     4444666666666888998


Q ss_pred             hcCC
Q psy10472         92 RYGD   95 (181)
Q Consensus        92 ~~~~   95 (181)
                      .+..
T Consensus       188 ~~~~  191 (337)
T PTZ00035        188 AYAR  191 (337)
T ss_pred             EEEc
Confidence            8764

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.61  E-value=4.4e-08  Score=79.28  Aligned_cols=63  Identities=27%  Similarity=0.354  Sum_probs=45.4

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE---CCEECCCCChhhhccCcEEEEccCCCC
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI---SGVDLKHLDGTWLRGNVIGLINQEPVL   82 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i---~g~~i~~~~~~~~r~~~i~~v~q~~~l   82 (181)
                      .+. +++++++|+||+|||||++.|.|...+..|+|..   .|...+.. ...++....+++.+.|.+
T Consensus       158 ~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~-~~~~~~~~~~~liDtPG~  223 (287)
T cd01854         158 YLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTH-RELFPLPGGGLLIDTPGF  223 (287)
T ss_pred             hhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccce-EEEEEcCCCCEEEECCCC
Confidence            344 5899999999999999999999999999999876   34332221 112222225788888866

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.60  E-value=2.6e-06  Score=59.65  Aligned_cols=40  Identities=38%  Similarity=0.610  Sum_probs=32.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCCCc-ceEEECCEEC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDVSS-GNITISGVDL   60 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~-G~i~i~g~~i   60 (181)
                      .+..+.|+||+|+||||+++.++..+.... +-+.++....
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~   41 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI   41 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence            367899999999999999999999987765 5666666543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=98.60  E-value=6.4e-08  Score=81.81  Aligned_cols=159  Identities=19%  Similarity=0.212  Sum_probs=92.1

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh---h----hhccCcEEEEcc--CC
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---T----WLRGNVIGLINQ--EP   80 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~---~----~~r~~~i~~v~q--~~   80 (181)
                      .+++.+ |++.+|++++|+|+||+|||||+++|+++..|+.+.+...|+.-.....   .    ....+.+-++.+  +|
T Consensus       126 ~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~  204 (411)
T TIGR03496       126 RAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADES  204 (411)
T ss_pred             Eeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCC
Confidence            477777 9999999999999999999999999999999998877666654222111   0    111222333333  22


Q ss_pred             C------Cccc-cHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCCC-CCCHHHHHHHHHHHHHhc-----CC
Q psy10472         81 V------LFAT-SVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPSG-ALDNESEKLVQAALESAC-----KG  142 (181)
Q Consensus        81 ~------l~~~-tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~~-~LD~~~~~~i~~~l~~~~-----~~  142 (181)
                      .      .+.. |+.|+++.-...     .+-.+..++.+.+.+  ...+.|.. +-.+..-..+-+++.+..     .|
T Consensus       205 ~~~r~~a~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~REisl--~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~~~G  282 (411)
T TIGR03496       205 PLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIAL--AIGEPPATKGYPPSVFAKLPQLVERAGNGEEGKG  282 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHH--hcCCCCCccCcCHHHHHHhHHHHHHhcccCCCCc
Confidence            1      1222 667777542111     123344445544432  22344554 566665556666665421     23


Q ss_pred             -cEEEEEec-Cchhh-hc-CCeEEEEeCCeEEe
Q psy10472        143 -RTVLMIAH-RLSTV-QN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       143 -~tii~vtH-d~~~~-~~-~d~v~~l~~G~i~~  171 (181)
                       .|.|.+-. .-+.+ .. +|.+.-+-||.++-
T Consensus       283 SIT~~~tv~~~~dd~~dpi~~~~~~i~dg~ivL  315 (411)
T TIGR03496       283 SITAFYTVLVEGDDQQDPIADAARAILDGHIVL  315 (411)
T ss_pred             ceeEEEEEEccCCCCCCcchhhhcccccEEEEE
Confidence             45554433 11222 22 67777777888764

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK05922 type III secretion system ATPase; Validated

Probab=98.60  E-value=7e-08  Score=81.81  Aligned_cols=158  Identities=19%  Similarity=0.160  Sum_probs=88.0

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh------hh-hccCcEEEEccC--CC
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG------TW-LRGNVIGLINQE--PV   81 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~------~~-~r~~~i~~v~q~--~~   81 (181)
                      +++.+ +.+.+|+.++|+|+||+|||||+++|++..+++.|.+...|+.-.....      .. ...+.+-++.+.  |.
T Consensus       147 ~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~  225 (434)
T PRK05922        147 AIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETA  225 (434)
T ss_pred             eecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCH
Confidence            55554 9999999999999999999999999999999999988766653222100      00 011112233221  11


Q ss_pred             ------Ccc-ccHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCCC-CCCHHHHHHHHHHHHHhc---CC-cE
Q psy10472         82 ------LFA-TSVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPSG-ALDNESEKLVQAALESAC---KG-RT  144 (181)
Q Consensus        82 ------l~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~~-~LD~~~~~~i~~~l~~~~---~~-~t  144 (181)
                            .+. .|+.|+++--...     .+-.+..+|.+...+  ...+.|.. +-.+..-..+-.++++..   +| .|
T Consensus       226 ~~r~~a~~~a~tiAEyfrd~G~~VLl~~DslTR~A~A~REisl--~~ge~P~~~gyp~svfs~l~~l~ERag~~~~GSIT  303 (434)
T PRK05922        226 PTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVAL--ARGETLSAHHYAASVFHHVSEFTERAGNNDKGSIT  303 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHH--hcCCCCCcCCcCchHHHHhHHHHHhhcCCCCccee
Confidence                  111 2566666421111     123344444444433  22344554 444554455555555532   34 45


Q ss_pred             EE-EEecCchhhh-cCCeEEEEeCCeEEe
Q psy10472        145 VL-MIAHRLSTVQ-NADLIVVLQAGQIVE  171 (181)
Q Consensus       145 ii-~vtHd~~~~~-~~d~v~~l~~G~i~~  171 (181)
                      .+ .|-.+.+... .+|.+.-+-||+|+-
T Consensus       304 ~~~tVl~~~~~~dpi~d~~rsilDGhIvL  332 (434)
T PRK05922        304 ALYAILHYPNHPDIFTDYLKSLLDGHFFL  332 (434)
T ss_pred             EEEEEEecCCCCCccccchhhhcCcEEEE
Confidence            55 3334444223 377777778888865

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=98.56  E-value=8.2e-08  Score=81.45  Aligned_cols=159  Identities=21%  Similarity=0.223  Sum_probs=91.2

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh---hh---ccCcEEEEc--cCCC
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT---WL---RGNVIGLIN--QEPV   81 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~---~~---r~~~i~~v~--q~~~   81 (181)
                      .+++++ +++.+|++++|+|+||+|||||+++|++...++.+.|...|+.-......   .+   ..+.+-++.  +++.
T Consensus       146 ~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp  224 (434)
T PRK08472        146 KSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSP  224 (434)
T ss_pred             HHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCH
Confidence            478888 99999999999999999999999999999999999998888765432211   01   112122222  2221


Q ss_pred             ------Cccc-cHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCCC-CCCHHHHHHHHHHHHHh---c-CC-c
Q psy10472         82 ------LFAT-SVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPSG-ALDNESEKLVQAALESA---C-KG-R  143 (181)
Q Consensus        82 ------l~~~-tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~~-~LD~~~~~~i~~~l~~~---~-~~-~  143 (181)
                            .+.. ++.|.+.--...     .+-.+...|.+...+  ...+.|.. +--+..-..+-+++++.   . +| .
T Consensus       225 ~~R~~~~~~a~~iAEyFrd~G~~Vll~~DslTr~A~A~REi~l--~~ge~P~~~Gyp~~vf~~l~~l~ERag~~~g~GSI  302 (434)
T PRK08472        225 LMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGL--ALGEPPTSKGYPPSVLSLLPQLMERAGKEEGKGSI  302 (434)
T ss_pred             HHhhHHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHH--hcCCCCCccCcCchHHHHHHHHHHHhccCCCCcee
Confidence                  1222 566665421111     123344445544433  22344443 55555555566666553   2 23 4


Q ss_pred             EEEEEec-Cchhh-hc-CCeEEEEeCCeEEe
Q psy10472        144 TVLMIAH-RLSTV-QN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       144 tii~vtH-d~~~~-~~-~d~v~~l~~G~i~~  171 (181)
                      |.+.+-. +-+.+ .. +|.+.-+-||.|+-
T Consensus       303 T~~~tVlv~gdD~~dpi~d~~~~i~Dg~ivL  333 (434)
T PRK08472        303 TAFFTVLVEGDDMSDPIADQSRSILDGHIVL  333 (434)
T ss_pred             eEeEEEEecCCCCCCCchHHhhhhcceEEEE
Confidence            5554433 22223 22 66777777887764

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=98.56  E-value=1.8e-06  Score=79.11  Aligned_cols=55  Identities=13%  Similarity=0.082  Sum_probs=45.9

Q ss_pred             ccCCCCCC-CHHHHHHHHHHHHHhc-CCcEEEEEecCchhhh----------cCCeEEEEeCCeEEe
Q psy10472        117 SEFPSGAL-DNESEKLVQAALESAC-KGRTVLMIAHRLSTVQ----------NADLIVVLQAGQIVE  171 (181)
Q Consensus       117 ~~~P~~~L-D~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~----------~~d~v~~l~~G~i~~  171 (181)
                      .|+|+.+| |+...+.+.+.++..+ .|.++|++||+++.+.          .|+++++|.+|++..
T Consensus       658 lDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~  724 (818)
T PRK13830        658 LDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAARE  724 (818)
T ss_pred             EECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccc
Confidence            45588899 6889999999998764 5899999999998763          499999999998754

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.56  E-value=5.3e-08  Score=74.52  Aligned_cols=56  Identities=25%  Similarity=0.363  Sum_probs=43.0

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCCC-cceEEECCEECCCCChhhhccCcEEEEccCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDVS-SGNITISGVDLKHLDGTWLRGNVIGLINQEP   80 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~   80 (181)
                      ++|.+++|+|+||||||||.+.|.+.+.+. .|.+.++|.++..    .+.. .++|.+|+.
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~-~~~~~~~~~   78 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCS-DLGFSDADR   78 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhh-cCCcCcccH
Confidence            678999999999999999999999977554 4689999977642    1112 267777765

>TIGR00606 rad50 rad50

Probab=98.55  E-value=1.2e-07  Score=90.66  Aligned_cols=60  Identities=23%  Similarity=0.295  Sum_probs=43.6

Q ss_pred             eEEecCCcEEEEECCCCCcHHHHHHHH----hcCCCCC-cceEEECCEECCCCChhhhccCcEEEEccC
Q psy10472         16 NLRIPAGQKVAIVGSSGNGKSTIVALL----ERFYDVS-SGNITISGVDLKHLDGTWLRGNVIGLINQE   79 (181)
Q Consensus        16 sl~i~~Ge~~~liG~nGsGKSTLl~~l----~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~   79 (181)
                      .++|.+| +++|+|||||||||++.+|    .|..+|. .|.+++.+.++...  ...+. .|.+.|++
T Consensus        23 ~I~F~~~-~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~--~~~~a-~V~l~F~~   87 (1311)
T TIGR00606        23 IIDFFSP-LTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQE--TDVRA-QIRLQFRD   87 (1311)
T ss_pred             eeecccc-eEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCcc--Hhhhh-eeEEEEEc
Confidence            3445454 9999999999999999999    5999996 78888887655432  12222 36777754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=98.54  E-value=7.1e-08  Score=82.06  Aligned_cols=159  Identities=19%  Similarity=0.209  Sum_probs=85.3

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc---ceEEECCEECCCCChh----hhccCcEEEEcc--CC
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS---GNITISGVDLKHLDGT----WLRGNVIGLINQ--EP   80 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~---G~i~i~g~~i~~~~~~----~~r~~~i~~v~q--~~   80 (181)
                      .+++.+ |.+.+|++++|+|+||+|||||+++|+|+..|+.   |.|-..|.++..+-..    ....+.+-++.+  ++
T Consensus       157 ~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~  235 (451)
T PRK05688        157 RSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDA  235 (451)
T ss_pred             eeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCC
Confidence            578888 9999999999999999999999999999988762   4444444433221110    011122333333  22


Q ss_pred             CC------cc-ccHHHHhhcCCCC-----CCHHHHHHHHHHhccccccccCCCC-CCCHHHHHHHHHHHHHh---c--CC
Q psy10472         81 VL------FA-TSVRENIRYGDSS-----VSDEQIEEAAKLANAHGFISEFPSG-ALDNESEKLVQAALESA---C--KG  142 (181)
Q Consensus        81 ~l------~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~P~~-~LD~~~~~~i~~~l~~~---~--~~  142 (181)
                      ..      +. .|+.|++.--...     .+-.+...+.+.+.+  ...+.|.. +-.+..-..+-.++++.   .  .|
T Consensus       236 p~~r~~a~~~a~aiAEyfrd~G~~VLl~~DslTR~A~A~REisl--~~gepP~~~GYp~svfs~l~~l~ERag~~~~~~G  313 (451)
T PRK05688        236 PLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIAL--AIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGG  313 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEEecchhHHHHHHHHHHH--hcCCCCcccCCCchHHHHhHHHHHHhcCCCCCCc
Confidence            11      11 2566666421111     123344445544433  22344443 44444444555555442   1  23


Q ss_pred             -cEEEEEecC-chhh-hc-CCeEEEEeCCeEEe
Q psy10472        143 -RTVLMIAHR-LSTV-QN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       143 -~tii~vtHd-~~~~-~~-~d~v~~l~~G~i~~  171 (181)
                       .|.|.+..- -+.+ .. +|.+.-+-||+|+-
T Consensus       314 SITai~tVl~~gdD~~dpI~d~~~silDGhIvL  346 (451)
T PRK05688        314 SITAFYTVLSEGDDQQDPIADSARGVLDGHIVL  346 (451)
T ss_pred             eeeEEEEEEecCCCCCCchHHHHHhhccEEEEE
Confidence             455554432 2222 22 56666677777764

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.54  E-value=1.4e-07  Score=90.18  Aligned_cols=47  Identities=15%  Similarity=0.121  Sum_probs=42.6

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD   59 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~   59 (181)
                      +.+..|+|.+| +++|+|+|||||||+|++|++++.|..|.+.|++.+
T Consensus        18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~   64 (1486)
T PRK04863         18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT   64 (1486)
T ss_pred             ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence            45668899986 999999999999999999999999999999999764

>PRK00098 GTPase RsgA; Reviewed

Probab=98.53  E-value=1e-07  Score=77.58  Aligned_cols=62  Identities=26%  Similarity=0.310  Sum_probs=45.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE---CCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI---SGVDLKHLDGTWLRGNVIGLINQEPVLF   83 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i---~g~~i~~~~~~~~r~~~i~~v~q~~~l~   83 (181)
                      +|.+++++|+||+|||||++.|.|...+..|+|..   .|+..+... ........+++.+.|.+.
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~-~~~~~~~~~~~~DtpG~~  227 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHV-ELYDLPGGGLLIDTPGFS  227 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccE-EEEEcCCCcEEEECCCcC
Confidence            58999999999999999999999999999999986   444333211 111111256888887665

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.53  E-value=1.1e-07  Score=80.65  Aligned_cols=50  Identities=28%  Similarity=0.404  Sum_probs=44.6

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEEC
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL   60 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i   60 (181)
                      .+++. .|.+.+|++++|+|+||+|||||+++|++..+|+.|.|.+.|+.-
T Consensus       145 raID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg  194 (432)
T PRK06793        145 KSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG  194 (432)
T ss_pred             EEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc
Confidence            35666 499999999999999999999999999999999999998887653

>cd00879 Sar1 Sar1 subfamily

Probab=98.53  E-value=9.4e-08  Score=72.07  Aligned_cols=48  Identities=21%  Similarity=0.381  Sum_probs=37.4

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhc--------CCCCCcceEEECCEE
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLER--------FYDVSSGNITISGVD   59 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~g--------l~~p~~G~i~i~g~~   59 (181)
                      +|+++++..+++++ +|+|++|||||||++.+.+        ...|..+++.+++.+
T Consensus         9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~   64 (190)
T cd00879           9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIK   64 (190)
T ss_pred             HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEE
Confidence            58888988777755 9999999999999999998        334455666665543

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>TIGR00368 Mg chelatase-related protein

Probab=98.53  E-value=5.2e-08  Score=84.27  Aligned_cols=56  Identities=14%  Similarity=0.308  Sum_probs=50.1

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL   63 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~   63 (181)
                      ...+.+.+++.+..|+.+.|+||||+|||||++.+.++++|.+|.+.+++..+...
T Consensus       197 q~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~  252 (499)
T TIGR00368       197 QQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL  252 (499)
T ss_pred             cHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence            34578889999999999999999999999999999999999999999988776543

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=98.51  E-value=3.7e-08  Score=73.24  Aligned_cols=60  Identities=15%  Similarity=0.114  Sum_probs=41.9

Q ss_pred             ECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhhc
Q psy10472         28 VGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIRY   93 (181)
Q Consensus        28 iG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~~   93 (181)
                      +|+||||||||+++|++.+    |.+.++|..+.  +....++...|+.+|+....+. +..+|..+
T Consensus         1 ~G~sGsGKSTla~~la~~l----~~~~~~~d~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   61 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQL----HAAFLDGDFLH--PRRNIEKMASGEPLNDDDRKPWLQALNDAAF   61 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHh----CCeEEeCccCC--chhhhccccCCCCCChhhHHHHHHHHHHHHH
Confidence            6999999999999999987    67888885432  1122333346788887654443 67677665

>PLN03210 Resistant to P

Probab=98.50  E-value=7.1e-07  Score=84.43  Aligned_cols=44  Identities=30%  Similarity=0.263  Sum_probs=36.8

Q ss_pred             eeEEecCCcEEEEECCCCCcHHHHHHHHhcC-CCCCcceEEECCE
Q psy10472         15 FNLRIPAGQKVAIVGSSGNGKSTIVALLERF-YDVSSGNITISGV   58 (181)
Q Consensus        15 isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl-~~p~~G~i~i~g~   58 (181)
                      ++++.+++++++|+|++|+|||||++.+++. ....+|.+++++.
T Consensus       200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~  244 (1153)
T PLN03210        200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA  244 (1153)
T ss_pred             HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence            4677888999999999999999999999554 4556899988763

syringae 6; Provisional

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.50  E-value=6.7e-07  Score=70.08  Aligned_cols=143  Identities=13%  Similarity=0.191  Sum_probs=70.8

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHh-cCCCCCcceEEECCEECCCCChhhhccC--cEEEEccCC------CCccccHH
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLE-RFYDVSSGNITISGVDLKHLDGTWLRGN--VIGLINQEP------VLFATSVR   88 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~-gl~~p~~G~i~i~g~~i~~~~~~~~r~~--~i~~v~q~~------~l~~~tv~   88 (181)
                      =+++|.++.|.|++|||||||...++ +..+ ..+.+.+-..+   -++..+.++  .+++-..+.      .+++..+.
T Consensus        21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e---~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~   96 (234)
T PRK06067         21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTE---NTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTE   96 (234)
T ss_pred             CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcC---CCHHHHHHHHHHCCCChhHHHhCCCceEEecccc
Confidence            37899999999999999999999884 3333 23444443321   112211110  122211110      00000000


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHh---ccccccccCCCCC---CCHHHHHHHHHHHHHh-cCCcEEEEEecCchh-------
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLA---NAHGFISEFPSGA---LDNESEKLVQAALESA-CKGRTVLMIAHRLST-------  154 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~P~~~---LD~~~~~~i~~~l~~~-~~~~tii~vtHd~~~-------  154 (181)
                       -+.. .....++.+..+.+..   +..-++-|.|++.   .|......+...++.+ ..+.|+++++|+...       
T Consensus        97 -~~~~-~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~  174 (234)
T PRK06067         97 -GFEW-NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSR  174 (234)
T ss_pred             -cccc-CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHH
Confidence             0000 0000122222222222   3344566778853   4444444555555543 358899999997654       


Q ss_pred             hhc-CCeEEEEeC
Q psy10472        155 VQN-ADLIVVLQA  166 (181)
Q Consensus       155 ~~~-~d~v~~l~~  166 (181)
                      +.. +|-++.|+.
T Consensus       175 ~~~l~DgvI~L~~  187 (234)
T PRK06067        175 IRSICDVYLKLRA  187 (234)
T ss_pred             HHhheEEEEEEEe
Confidence            333 677777763

>TIGR00101 ureG urease accessory protein UreG

Probab=98.49  E-value=8.5e-08  Score=73.62  Aligned_cols=56  Identities=16%  Similarity=0.281  Sum_probs=38.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV   81 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~   81 (181)
                      .++|+||+|||||||++.+.+.+++..| +.+...+........+..+ .++++|+..
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~-~~~~~~~~~   58 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVK-NSALPPERI   58 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHH-cCCCCcCce
Confidence            6899999999999999999999888655 4444444433333333333 577777653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.47  E-value=8.9e-08  Score=74.63  Aligned_cols=32  Identities=28%  Similarity=0.426  Sum_probs=27.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCC--CcceEEE
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDV--SSGNITI   55 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p--~~G~i~i   55 (181)
                      +++|.||||||||||.+.|.+++.+  .++.|.+
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v   34 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL   34 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence            5899999999999999999999875  4566654

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd04155 Arl3 Arl3 subfamily

Probab=98.47  E-value=2.6e-07  Score=68.36  Aligned_cols=38  Identities=26%  Similarity=0.458  Sum_probs=31.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcC----CCCCcc----eEEECCEEC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERF----YDVSSG----NITISGVDL   60 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl----~~p~~G----~i~i~g~~i   60 (181)
                      -.++|+|++|||||||++.+.|.    +.|+.|    .+.++|..+
T Consensus        15 ~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~   60 (173)
T cd04155          15 PRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKL   60 (173)
T ss_pred             cEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEE
Confidence            45999999999999999999997    567788    666666543

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=98.47  E-value=1.8e-07  Score=79.30  Aligned_cols=39  Identities=23%  Similarity=0.463  Sum_probs=35.3

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS   49 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~   49 (181)
                      .+++.+ |++.+|++++|+|+||+|||||+++|++...++
T Consensus       151 ~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d  189 (444)
T PRK08972        151 RAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD  189 (444)
T ss_pred             eeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence            366666 999999999999999999999999999998775

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.43  E-value=6e-07  Score=82.38  Aligned_cols=123  Identities=18%  Similarity=0.210  Sum_probs=68.5

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC--------CCC-CcceEEECCEECCCCChhhhccCcEEEEccCCC
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--------YDV-SSGNITISGVDLKHLDGTWLRGNVIGLINQEPV   81 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl--------~~p-~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~   81 (181)
                      |-+|+++. +.+.++.|.|||++||||+||.++-.        .-| .+.++.+.+.                       
T Consensus       597 vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~-----------------------  652 (854)
T PRK05399        597 VPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDR-----------------------  652 (854)
T ss_pred             EecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCe-----------------------
Confidence            45666666 56789999999999999999998533        222 2222222221                       


Q ss_pred             Cccc-cHHHHhhcCCCCCC--HHHHHHHHHHhcc-ccccccCC---CCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCc
Q psy10472         82 LFAT-SVRENIRYGDSSVS--DEQIEEAAKLANA-HGFISEFP---SGALDNESEKLVQAALESAC-K-GRTVLMIAHRL  152 (181)
Q Consensus        82 l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~P---~~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~  152 (181)
                      +|.. -..|++.-+.+...  ..++..+++.+.- .-++.|+|   |+.+|..  ...+.+++.+. . ++++|++||+.
T Consensus       653 I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~--aia~aile~l~~~~~~~~l~aTH~~  730 (854)
T PRK05399        653 IFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL--SIAWAVAEYLHDKIGAKTLFATHYH  730 (854)
T ss_pred             eeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH--HHHHHHHHHHHhcCCceEEEEechH
Confidence            1111 12344433322211  1223344443322 23567888   7777743  33444555443 3 58999999997


Q ss_pred             hhhhcCC
Q psy10472        153 STVQNAD  159 (181)
Q Consensus       153 ~~~~~~d  159 (181)
                      +....++
T Consensus       731 el~~l~~  737 (854)
T PRK05399        731 ELTELEE  737 (854)
T ss_pred             HHHHHhh
Confidence            6655454

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.43  E-value=3.7e-07  Score=76.35  Aligned_cols=41  Identities=27%  Similarity=0.441  Sum_probs=33.8

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE-EECCEE
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI-TISGVD   59 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i-~i~g~~   59 (181)
                      +.+|+++.|.|++|+|||||+..++.......+.+ ++.+++
T Consensus        79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE  120 (372)
T cd01121          79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE  120 (372)
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence            77899999999999999999999988776665666 556653

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.42  E-value=2.3e-07  Score=69.56  Aligned_cols=26  Identities=42%  Similarity=0.463  Sum_probs=24.2

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      |++++|+||||||||||++.|++..+
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            78999999999999999999999764

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK09183 transposase/IS protein; Provisional

Probab=98.41  E-value=7.6e-07  Score=71.07  Aligned_cols=36  Identities=22%  Similarity=0.388  Sum_probs=31.5

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      .|.+++| +++|+.+.|+||+|+|||+|..+|+....
T Consensus        92 ~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~  127 (259)
T PRK09183         92 SLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAV  127 (259)
T ss_pred             HHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4667788 99999999999999999999999976543

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=98.41  E-value=2.3e-07  Score=70.12  Aligned_cols=34  Identities=32%  Similarity=0.549  Sum_probs=28.0

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++++++++.+| +++|.||||+||||++.+|.-.+
T Consensus        10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L   43 (202)
T PF13476_consen   10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYAL   43 (202)
T ss_dssp             EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence            47888999887 99999999999999999987554

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.41  E-value=8.6e-08  Score=82.87  Aligned_cols=143  Identities=18%  Similarity=0.196  Sum_probs=75.0

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHH--hcCCCCCcceEEECCEECCCCChhhhc--cCcEEEEccCCC----Cc--cccHH
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALL--ERFYDVSSGNITISGVDLKHLDGTWLR--GNVIGLINQEPV----LF--ATSVR   88 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l--~gl~~p~~G~i~i~g~~i~~~~~~~~r--~~~i~~v~q~~~----l~--~~tv~   88 (181)
                      +++|..+.|.||+|||||||...+  .|..++.+..+++....    ++..++  ...+||-+++..    ++  .....
T Consensus        18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE----~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~   93 (484)
T TIGR02655        18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE----SPQDIIKNARSFGWDLQKLVDEGKLFILDASPD   93 (484)
T ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec----CHHHHHHHHHHcCCCHHHHhhcCceEEEecCch
Confidence            789999999999999999999876  46665556667776542    122211  112455444321    11  00000


Q ss_pred             HHhhcCCCCCC-HHHHH---HHHHHhcccccccc---CCCCCCC--HHHHHHHHHHHHHhc-CCcEEEEEecCchh----
Q psy10472         89 ENIRYGDSSVS-DEQIE---EAAKLANAHGFISE---FPSGALD--NESEKLVQAALESAC-KGRTVLMIAHRLST----  154 (181)
Q Consensus        89 enl~~~~~~~~-~~~~~---~~~~~~~~~~~~~~---~P~~~LD--~~~~~~i~~~l~~~~-~~~tii~vtHd~~~----  154 (181)
                      ........... .....   ..++.-+...+.-+   ......|  ...++.++++++.++ .|+|+|++||+.+.    
T Consensus        94 ~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~  173 (484)
T TIGR02655        94 PEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQIGVTTVMTTERIEEYGPI  173 (484)
T ss_pred             hccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHHHCCCEEEEEecCccccccc
Confidence            00000000011 11111   22222122211111   0111223  346677888887764 58999999998764    


Q ss_pred             ----h-hc-CCeEEEEe
Q psy10472        155 ----V-QN-ADLIVVLQ  165 (181)
Q Consensus       155 ----~-~~-~d~v~~l~  165 (181)
                          + .. ||.|+.|+
T Consensus       174 ~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       174 ARYGVEEFVSDNVVILR  190 (484)
T ss_pred             ccCCceeEeeeeEEEEE
Confidence                2 44 89999886

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK06820 type III secretion system ATPase; Validated

Probab=98.40  E-value=4.4e-07  Score=77.19  Aligned_cols=49  Identities=22%  Similarity=0.330  Sum_probs=42.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCE
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGV   58 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~   58 (181)
                      ..+++.+ +++.+||.++|+|+||+|||||+++|++...|+.+.+-.-|+
T Consensus       151 i~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGe  199 (440)
T PRK06820        151 IRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGE  199 (440)
T ss_pred             Cceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEcc
Confidence            3578888 999999999999999999999999999999998765444443

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=98.40  E-value=4.9e-06  Score=64.68  Aligned_cols=45  Identities=18%  Similarity=0.138  Sum_probs=32.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCc---------hhhhc-CCeEEEEe
Q psy10472        121 SGALDNESEKLVQAALESAC-KGRTVLMIAHRL---------STVQN-ADLIVVLQ  165 (181)
Q Consensus       121 ~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~---------~~~~~-~d~v~~l~  165 (181)
                      ..+.|...++.+.++++.++ .+.|+++++|..         ..+.. ||.|+.|+
T Consensus       122 ~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~  177 (224)
T TIGR03880       122 LFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK  177 (224)
T ss_pred             hcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence            33455666777888887764 489999999952         22445 99999996

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PRK06936 type III secretion system ATPase; Provisional

Probab=98.40  E-value=3.7e-07  Score=77.50  Aligned_cols=40  Identities=33%  Similarity=0.528  Sum_probs=37.7

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS   50 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~   50 (181)
                      .+++++ |++.+|++++|+|+||+|||||+++|++...++-
T Consensus       151 ~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv  190 (439)
T PRK06936        151 RVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV  190 (439)
T ss_pred             ceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence            488999 9999999999999999999999999999998874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	181
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		2e-39
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		2e-39
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		2e-39
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		5e-39
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		1e-38
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		1e-38
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		8e-36
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		3e-31
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		3e-31
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		3e-31
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		3e-31
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		4e-31
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		5e-31
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		7e-31
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		8e-31
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		6e-30
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		6e-30
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		4e-28
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		5e-26
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		5e-25
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		4e-18
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		1e-17
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		8e-17
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		9e-17
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		7e-16
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		6e-08
3gd7_A	390	Crystal Structure Of Human Nbd2 Complexed With N6-		2e-07
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		5e-07
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		2e-06
1xmj_A	290	Crystal Structure Of Human Deltaf508 Human Nbd1 Dom		2e-06
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		3e-06
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		5e-06
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		8e-06
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		8e-06
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		9e-06
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		9e-06
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		9e-06
2bbo_A	291	Human Nbd1 With Phe508 Length = 291		1e-05
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		1e-05
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		1e-05
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		2e-05
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		3e-05
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		3e-05
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		4e-05
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		7e-05
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		1e-04
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		1e-04
1xf9_A	283	Structure Of Nbd1 From Murine Cftr- F508s Mutant Le		3e-04
1r0z_A	286	Phosphorylated Cystic Fibrosis Transmembrane Conduc		4e-04
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		5e-04
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		5e-04
1q3h_A	286	Mouse Cftr Nbd1 With Amp.Pnp Length = 286		5e-04
1xfa_A	283	Structure Of Nbd1 From Murine Cftr- F508r Mutant Le		5e-04
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		5e-04

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/210 (42%), Positives = 123/210 (58%), Gaps = 45/210 (21%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           I +DF+L IP+G   A+VG SG+GKST+++LL R YD +SG I++ G D++ L+  WLR 
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418
Query: 71  NVIGLINQEPVLFATSVRENIRYG---DSSVSDEQIEEAAKLANAHGFISEFPSG----- 122
             IG ++QEP+LF+ S+ ENI YG    SSV+ E+I+  A++ANA  FI  FP G     
Sbjct: 419 K-IGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477
Query: 123 -----------------------------------ALDNESEKLVQAALESACKGRTVLM 147
                                              ALD E+E LVQ AL+    GRTVL+
Sbjct: 478 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLV 537
Query: 148 IAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           IAHRLST++NA+++ VL  G+I E  G+HE
Sbjct: 538 IAHRLSTIKNANMVAVLDQGKITEY-GKHE 566

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/210 (43%), Positives = 124/210 (59%), Gaps = 44/210 (20%)
Query: 11   ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
            +L+  +L +  GQ +A+VGSSG GKST+V LLERFYD  +G++ + G ++K L+  WLR 
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 71   NVIGLINQEPVLFATSVRENIRYGDSS--VSDEQIEEAAKLANAHGFISEFP-------- 120
              +G+++QEP+LF  S+ ENI YGD+S  VS E+I  AAK AN H FI   P        
Sbjct: 1108 Q-LGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166
Query: 121  --------------------------------SGALDNESEKLVQAALESACKGRTVLMI 148
                                            + ALD ESEK+VQ AL+ A +GRT ++I
Sbjct: 1167 DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVI 1226
Query: 149  AHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178
            AHRLST+QNADLIVV+Q G++ E  G H+ 
Sbjct: 1227 AHRLSTIQNADLIVVIQNGKVKEH-GTHQQ 1255

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/210 (43%), Positives = 124/210 (59%), Gaps = 44/210 (20%)
Query: 11   ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
            +L+  +L +  GQ +A+VGSSG GKST+V LLERFYD  +G++ + G ++K L+  WLR 
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 71   NVIGLINQEPVLFATSVRENIRYGDSS--VSDEQIEEAAKLANAHGFISEFP-------- 120
              +G+++QEP+LF  S+ ENI YGD+S  VS E+I  AAK AN H FI   P        
Sbjct: 1108 Q-LGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166
Query: 121  --------------------------------SGALDNESEKLVQAALESACKGRTVLMI 148
                                            + ALD ESEK+VQ AL+ A +GRT ++I
Sbjct: 1167 DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVI 1226
Query: 149  AHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178
            AHRLST+QNADLIVV+Q G++ E  G H+ 
Sbjct: 1227 AHRLSTIQNADLIVVIQNGKVKEH-GTHQQ 1255

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score =  156 bits (395), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 121/206 (58%), Gaps = 42/206 (20%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           IL+  NLR+ AGQ VA+VGSSG GKSTI++LL R+YDV  G ITI GVD++ ++  +LR 
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492
Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
           NV  +++QEP LF  ++ ENI  G   ++ E++  A K+ANA  FI   P+G        
Sbjct: 493 NV-AVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDR 551
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD ESE +VQ AL+ A KGRT ++IAH
Sbjct: 552 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAH 611
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQH 176
           RLST++NADLI+  + GQ+VE +G H
Sbjct: 612 RLSTIRNADLIISCKNGQVVE-VGDH 636

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score =  155 bits (392), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/210 (41%), Positives = 122/210 (58%), Gaps = 45/210 (21%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           I +DF+L IP+G   A+VG SG+GKST+++LL R YD +SG I++ G D++ L+  WLR 
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 449
Query: 71  NVIGLINQEPVLFATSVRENIRYG---DSSVSDEQIEEAAKLANAHGFISEFPSG----- 122
             IG ++QEP+LF+ S+ ENI YG    SSV+ E+I+  A++ANA  FI  FP G     
Sbjct: 450 K-IGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 508
Query: 123 -----------------------------------ALDNESEKLVQAALESACKGRTVLM 147
                                              ALD E+E LVQ AL+    GRTVL+
Sbjct: 509 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLV 568
Query: 148 IAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           IAH LST++NA+++ VL  G+I E  G+HE
Sbjct: 569 IAHHLSTIKNANMVAVLDQGKITEY-GKHE 597

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score =  155 bits (391), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/209 (39%), Positives = 126/209 (60%), Gaps = 42/209 (20%)
Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K +LKD    I  GQKVA+VG +G+GK+TIV LL RFYDV  G I + G+D++ +  + L
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGA----- 123
           R + IG++ Q+ +LF+T+V+EN++YG+   +DE+I+EAAKL ++  FI   P G      
Sbjct: 428 RSS-IGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLT 486
Query: 124 -----------------------------------LDNESEKLVQAALESACKGRTVLMI 148
                                              +D ++EK +QAA+    +G+T ++I
Sbjct: 487 DNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIII 546
Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           AHRL+T++NADLI+VL+ G+IVEM G+H+
Sbjct: 547 AHRLNTIKNADLIIVLRDGEIVEM-GKHD 574

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score =  146 bits (368), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 115/206 (55%), Gaps = 42/206 (20%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           ILKD NL I  G+ VA VG SG GKST++ L+ RFYDV+SG I I G ++K      LR 
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR- 414
Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
           N IGL+ Q+ +LF+ +V+ENI  G  + +DE++ EAAK+ANAH FI   P G        
Sbjct: 415 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGER 474
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD ESE ++Q AL+   K RT L++AH
Sbjct: 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAH 534
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQH 176
           RLST+ +AD IVV++ G IVE  G H
Sbjct: 535 RLSTITHADKIVVIENGHIVET-GTH 559

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score =  130 bits (328), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/212 (40%), Positives = 116/212 (54%), Gaps = 48/212 (22%)
Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           L++ NL+IPAG+ VA+VG SG+GKSTI +L+ RFYD+  G+I + G DL+      LR N
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR-N 417
Query: 72  VIGLINQEPVLFATSVRENIRYGDS-SVSDEQIEEAAKLANAHGFISEFPSG-------- 122
            + L++Q   LF  +V  NI Y  +   S EQIEEAA++A A  FI++  +G        
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN 477
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD ESE+ +QAAL+   K RT L+IAH
Sbjct: 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH 537
Query: 151 RLSTVQNADLIVVLQAGQIV------EMLGQH 176
           RLST++ AD IVV++ G IV      E+L QH
Sbjct: 538 RLSTIEQADEIVVVEDGIIVERGTHSELLAQH 569

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score =  130 bits (328), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/208 (38%), Positives = 111/208 (53%), Gaps = 42/208 (20%)
Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
            IL + NL I  G+ + IVG SG+GKST+  L++RFY   +G + I G DL   D  WLR
Sbjct: 23  VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 70  GNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
             V G++ Q+ VL   S+ +NI   +  +S E++  AAKLA AH FISE   G       
Sbjct: 83  RQV-GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 141
Query: 123 ---------------------------------ALDNESEKLVQAALESACKGRTVLMIA 149
                                            ALD ESE ++   +   CKGRTV++IA
Sbjct: 142 QGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRTVIIIA 201
Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           HRLSTV+NAD I+V++ G+IVE  G+H+
Sbjct: 202 HRLSTVKNADRIIVMEKGKIVEQ-GKHK 228

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score =  130 bits (328), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/208 (38%), Positives = 111/208 (53%), Gaps = 42/208 (20%)
Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
            IL + NL I  G+ + IVG SG+GKST+  L++RFY   +G + I G DL   D  WLR
Sbjct: 17  VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 76
Query: 70  GNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
             V G++ Q+ VL   S+ +NI   +  +S E++  AAKLA AH FISE   G       
Sbjct: 77  RQV-GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 135
Query: 123 ---------------------------------ALDNESEKLVQAALESACKGRTVLMIA 149
                                            ALD ESE ++   +   CKGRTV++IA
Sbjct: 136 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 195
Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           HRLSTV+NAD I+V++ G+IVE  G+H+
Sbjct: 196 HRLSTVKNADRIIVMEKGKIVEQ-GKHK 222

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score =  130 bits (328), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/208 (38%), Positives = 111/208 (53%), Gaps = 42/208 (20%)
Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
            IL + NL I  G+ + IVG SG+GKST+  L++RFY   +G + I G DL   D  WLR
Sbjct: 23  VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 70  GNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
             V G++ Q+ VL   S+ +NI   +  +S E++  AAKLA AH FISE   G       
Sbjct: 83  RQV-GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 141
Query: 123 ---------------------------------ALDNESEKLVQAALESACKGRTVLMIA 149
                                            ALD ESE ++   +   CKGRTV++IA
Sbjct: 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 201
Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           HRLSTV+NAD I+V++ G+IVE  G+H+
Sbjct: 202 HRLSTVKNADRIIVMEKGKIVEQ-GKHK 228

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score =  130 bits (327), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/208 (38%), Positives = 111/208 (53%), Gaps = 42/208 (20%)
Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
            IL + NL I  G+ + IVG SG+GKST+  L++RFY   +G + I G DL   D  WLR
Sbjct: 19  VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 78
Query: 70  GNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
             V G++ Q+ VL   S+ +NI   +  +S E++  AAKLA AH FISE   G       
Sbjct: 79  RQV-GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 137
Query: 123 ---------------------------------ALDNESEKLVQAALESACKGRTVLMIA 149
                                            ALD ESE ++   +   CKGRTV++IA
Sbjct: 138 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 197
Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           HRLSTV+NAD I+V++ G+IVE  G+H+
Sbjct: 198 HRLSTVKNADRIIVMEKGKIVEQ-GKHK 224

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 112/209 (53%), Gaps = 42/209 (20%)
Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           +  L+D +  +  GQ +A+VG SG GKSTI+ LL RFYD+SSG I I G D+  +    L
Sbjct: 67  RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASL 126
Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
           R + IG++ Q+ VLF  ++ +NIRYG  +  ++++E AA+ A  H  I  FP G      
Sbjct: 127 RSH-IGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVG 185
Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
                                             ALD  +E+ +QA+L   C  RT +++
Sbjct: 186 ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVV 245
Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           AHRLSTV NAD I+V++ G IVE  G+HE
Sbjct: 246 AHRLSTVVNADQILVIKDGCIVER-GRHE 273

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score =  129 bits (325), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 84/208 (40%), Positives = 114/208 (54%), Gaps = 43/208 (20%)
Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           L++ NL+IPAG+ VA+VG SG+GKSTI +L+ RFYD+  G I + G DL+      LR N
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLR-N 417
Query: 72  VIGLINQEPVLFATSVRENIRYGDS-SVSDEQIEEAAKLANAHGFISEFPSG-------- 122
            + L++Q   LF  +V  NI Y  +   S EQIEEAA++A A  FI++  +G        
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGEN 477
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ALD ESE+ +QAAL+   K RT L+IAH
Sbjct: 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH 537
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHEN 178
           RLST++ AD IVV++ G IVE  G H +
Sbjct: 538 RLSTIEKADEIVVVEDGVIVER-GTHND 564

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score =  129 bits (325), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 80/208 (38%), Positives = 111/208 (53%), Gaps = 42/208 (20%)
Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
            IL + NL I  G+ + IVG +G+GKST+  L++RFY   +G + I G DL   D  WLR
Sbjct: 19  VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 78
Query: 70  GNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
             V G++ Q+ VL   S+ +NI   +  +S E++  AAKLA AH FISE   G       
Sbjct: 79  RQV-GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 137
Query: 123 ---------------------------------ALDNESEKLVQAALESACKGRTVLMIA 149
                                            ALD ESE ++   +   CKGRTV++IA
Sbjct: 138 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 197
Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           HRLSTV+NAD I+V++ G+IVE  G+H+
Sbjct: 198 HRLSTVKNADRIIVMEKGKIVEQ-GKHK 224

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score =  126 bits (317), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/208 (38%), Positives = 110/208 (52%), Gaps = 42/208 (20%)
Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
            IL + NL I  G+ + IVG SG+GKST+  L++RFY   +G + I G DL   D  WLR
Sbjct: 17  VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 76
Query: 70  GNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
             V G++ Q+ VL   S+ +NI   +  +S E++  AAKLA AH FISE   G       
Sbjct: 77  RQV-GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 135
Query: 123 ---------------------------------ALDNESEKLVQAALESACKGRTVLMIA 149
                                            ALD ESE ++   +   CKGRTV++IA
Sbjct: 136 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 195
Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
            RLSTV+NAD I+V++ G+IVE  G+H+
Sbjct: 196 ARLSTVKNADRIIVMEKGKIVEQ-GKHK 222

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score =  126 bits (317), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/208 (38%), Positives = 110/208 (52%), Gaps = 42/208 (20%)
Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
            IL + NL I  G+ + IVG SG+GKST+  L++RFY   +G + I G DL   D  WLR
Sbjct: 23  VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 70  GNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
             V G++ Q+ VL   S+ +NI   +  +S E++  AAKLA AH FISE   G       
Sbjct: 83  RQV-GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 141
Query: 123 ---------------------------------ALDNESEKLVQAALESACKGRTVLMIA 149
                                            ALD ESE ++   +   CKGRTV++IA
Sbjct: 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 201
Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
            RLSTV+NAD I+V++ G+IVE  G+H+
Sbjct: 202 ARLSTVKNADRIIVMEKGKIVEQ-GKHK 228

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/211 (37%), Positives = 110/211 (52%), Gaps = 43/211 (20%)
Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K  L   +  IP G+ VA+VG SG+GKSTI  L  RFYDV SG+I + G D++    T L
Sbjct: 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL 415
Query: 69  RGNVIGLINQEPVLFATSVRENIRY-GDSSVSDEQIEEAAKLANAHGFISEFPSG----- 122
           R +   L++Q   LF  ++  NI Y  +   + EQIE+AA+ A+A  FI   P G     
Sbjct: 416 RRH-FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVI 474
Query: 123 -----------------------------------ALDNESEKLVQAALESACKGRTVLM 147
                                              ALD ESE+ +QAAL+   K +TVL+
Sbjct: 475 GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLV 534
Query: 148 IAHRLSTVQNADLIVVLQAGQIVEMLGQHEN 178
           IAHRLST++ AD I+V+  G+I+E  G+H +
Sbjct: 535 IAHRLSTIEQADEILVVDEGEIIER-GRHAD 564

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score =  113 bits (283), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 111/210 (52%), Gaps = 43/210 (20%)
Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGN 71
           LK  N  IP+G   A+VG +G+GKSTI  LL RFYD + G+I I G ++   +   +R +
Sbjct: 36  LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGDIKIGGKNVNKYNRNSIR-S 93
Query: 72  VIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFP----------- 120
           +IG++ Q+ +LF  +++ NI YG    +DE++ +A K A  + FI   P           
Sbjct: 94  IIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKG 153
Query: 121 -----------------------------SGALDNESEKLVQAALESACKGRTVLMIAHR 151
                                        + +LD+++E L Q A+E   K RT+++IAHR
Sbjct: 154 MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHR 213
Query: 152 LSTVQNADLIVVLQAGQIVEMLGQHENTRK 181
           LST+ +A+ I++L  G+IVE  G H++  K
Sbjct: 214 LSTISSAESIILLNKGKIVEK-GTHKDLLK 242

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 99/201 (49%), Gaps = 42/201 (20%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           IL+D +        +A  G SG GKSTI +LLERFY  ++G ITI G  + ++     R 
Sbjct: 17  ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 71  NVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFP--------- 120
             IG ++Q+  + A ++REN+ YG +   +DE + +   LA A  F+   P         
Sbjct: 77  Q-IGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE 135
Query: 121 -------------------------------SGALDNESEKLVQAALESACKGRTVLMIA 149
                                          + +LD+ESE +VQ AL+S  KGRT L+IA
Sbjct: 136 RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIA 195
Query: 150 HRLSTVQNADLIVVLQAGQIV 170
           HRLST+ +AD I  ++ GQI 
Sbjct: 196 HRLSTIVDADKIYFIEKGQIT 216

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 42/207 (20%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +L   N  +  G  VA++G +G+GKST++ L+ R  D   G + +  +D++ +    LRG
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417
Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG-------- 122
           + I  + QE VLF+ +++EN+++G    +D++I EAAK+A  H FI   P G        
Sbjct: 418 H-ISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERG 476
Query: 123 --------------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
                                           ++D  +EK +   L+   KG T  +I  
Sbjct: 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQ 536
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
           ++ T   AD I+VL  G+ V   G H+
Sbjct: 537 KIPTALLADKILVLHEGK-VAGFGTHK 562

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 91/204 (44%), Gaps = 44/204 (21%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +L+     +  G+  A+VG +G+GKST+ ALL+  Y  + G + + G  L   D  +L  
Sbjct: 34  VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 71  NVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
            V   + QEP+LF  S RENI YG   + + E+I   A  + AH FIS FP G       
Sbjct: 94  QVAA-VGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE 152
Query: 123 ---------------------------------ALDNESEKLVQAALESACK--GRTVLM 147
                                            ALD  ++  VQ  L  + +   RTVL+
Sbjct: 153 TGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 148 IAHRLSTVQNADLIVVLQAGQIVE 171
           I H+LS  + A  I+ L+ G + E
Sbjct: 213 ITHQLSLAERAHHILFLKEGSVCE 236

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score = 82.8 bits (203), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 90/204 (44%), Gaps = 44/204 (21%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +L+     +  G+  A+VG +G+GKST+ ALL+  Y  + G + + G  L   D  +L  
Sbjct: 34  VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 71  NVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSGA------ 123
            V   + QEP+LF  S RENI YG   + + E+I   A  + AH FIS FP G       
Sbjct: 94  QVAA-VGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE 152
Query: 124 ---------------------------LDNESEKL-------VQAALESACK--GRTVLM 147
                                      LDN +  L       VQ  L  + +   RTVL+
Sbjct: 153 TGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 148 IAHRLSTVQNADLIVVLQAGQIVE 171
           I  +LS  + A  I+ L+ G + E
Sbjct: 213 ITQQLSLAERAHHILFLKEGSVCE 236

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 82.8 bits (203), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 90/204 (44%), Gaps = 44/204 (21%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +L+     +  G+  A+VG +G+GKST+ ALL+  Y  + G + + G  L   D  +L  
Sbjct: 34  VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 71  NVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSGA------ 123
            V   + QEP+LF  S RENI YG   + + E+I   A  + AH FIS FP G       
Sbjct: 94  QVAA-VGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE 152
Query: 124 ---------------------------LDNESEKL-------VQAALESACK--GRTVLM 147
                                      LDN +  L       VQ  L  + +   RTVL+
Sbjct: 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 148 IAHRLSTVQNADLIVVLQAGQIVE 171
           I  +LS  + A  I+ L+ G + E
Sbjct: 213 ITQQLSLAERAHHILFLKEGSVCE 236

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 79.7 bits (195), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 90/204 (44%), Gaps = 44/204 (21%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +L+     +  G+  A+VG +G+GKST+ ALL+  Y  + G + + G  L   +  +L  
Sbjct: 32  VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 91
Query: 71  NVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
            V   + QEP +F  S++ENI YG     + E+I  AA  + AH FIS  P G       
Sbjct: 92  QVAA-VGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDE 150
Query: 123 ---------------------------------ALDNESEKLVQAALESACK--GRTVLM 147
                                            ALD  S+  V+  L  + +   R+VL+
Sbjct: 151 AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLL 210
Query: 148 IAHRLSTVQNADLIVVLQAGQIVE 171
           I   LS V+ AD I+ L+ G I E
Sbjct: 211 ITQHLSLVEQADHILFLEGGAIRE 234

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 40/211 (18%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW-LR 69
           +L D +L +  G+ + I+G+SG GK+T++  L  F    SG I++SG  +   +    +R
Sbjct: 19  VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 70  GNVIGLINQEPVLFA-TSVRENIRY------GDSSVSDEQIEEAAKLANAHGFISEFP-- 120
              +G + QE VLF   +V  NI Y      G ++   ++IE   +L         +P  
Sbjct: 79  ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHE 138
Query: 121 -SG--------------------------ALDNESEKLVQAALESACK--GRTVLMIAH- 150
            SG                          ALD +  + ++  + +A +  G++ + ++H 
Sbjct: 139 LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198
Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHENTRK 181
           R   +Q AD I V++ G+I++    HE  R+
Sbjct: 199 REEALQYADRIAVMKQGRILQTASPHELYRQ 229

>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           IL++ +  I  GQ+V ++G +G+GKST+++   R  + + G I I GV    +     R 
Sbjct: 36  ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR- 93
Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALD 125
              G+I Q+  +F+ + R+N+   +++ SD++I + A        I +FP G LD
Sbjct: 94  KAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEVGLRSVIEQFP-GKLD 146

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 95/203 (46%), Gaps = 45/203 (22%)
Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWL 68
           LK+ NL I  G+ V+I+G SG+GKST++ ++      + G + I  +    LD    T +
Sbjct: 21  LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 69  RGNVIGLINQE---------------PVLF----ATSVRENIRYGDSSVSDEQIEE---- 105
           R + IG + Q+               P++F    A S  E  +     +   ++EE    
Sbjct: 81  RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 106 ----------------AAKLANAHGFI-SEFPSGALDNES-EKLVQAALE-SACKGRTVL 146
                           A  LAN    I ++ P+GALD+++ EK++Q   + +   G+TV+
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVV 200
Query: 147 MIAHRLSTVQNADLIVVLQAGQI 169
           ++ H ++  +  + I+ L+ G++
Sbjct: 201 VVTHDINVARFGERIIYLKDGEV 223

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 45/203 (22%)
Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWL 68
           LK+ NL I  G+ V+I G SG+GKST + ++      + G + I  +    LD    T +
Sbjct: 21  LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 69  RGNVIGLINQE---------------PVLF----ATSVRENIRYGDSSVSDEQIEE---- 105
           R + IG + Q+               P++F    A S  E  +     +   ++EE    
Sbjct: 81  RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFAN 140
Query: 106 ----------------AAKLANAHGFI-SEFPSGALDNESEKLVQAALESACK--GRTVL 146
                           A  LAN    I ++ P+GALD+++ + +   L+   +  G+TV+
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVV 200
Query: 147 MIAHRLSTVQNADLIVVLQAGQI 169
           ++ H ++  +  + I+ L+ G++
Sbjct: 201 VVTHDINVARFGERIIYLKDGEV 223

>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 89/185 (48%), Gaps = 31/185 (16%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--- 67
           +LKD N +I  GQ +A+ GS+G GK++++ ++    + S G I  SG        +W   
Sbjct: 53  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 68  --LRGNVIGLINQE----PVLFATSVRE---------NIRYGDSSVSDEQIEEA------ 106
             ++ N+IG+   E     V+ A  + E         NI  G+  ++  + ++A      
Sbjct: 113 GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLAR 172
Query: 107 AKLANAHGFISEFPSGALDNESEKLVQAALESA-CK---GRTVLMIAHRLSTVQNADLIV 162
           A   +A  ++ + P G LD  +EK +    ES  CK    +T +++  ++  ++ AD I+
Sbjct: 173 AVYKDADLYLLDSPFGYLDVLTEKEI---FESCVCKLMANKTRILVTSKMEHLKKADKIL 229
Query: 163 VLQAG 167
           +L  G
Sbjct: 230 ILHEG 234

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 42/202 (20%)
Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
           T L + NL+I  G+ +A++G SG+GKST++  +   Y  +SG I     D+  L     +
Sbjct: 17  TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP---K 73
Query: 70  GNVIGLINQEPVLFA-TSVRENI------RYGDSSVSDEQIEEAAKLANAHGFISEFP-- 120
              +GL+ Q   L+   +V +NI      R       D+++ E AK+ +    ++ +P  
Sbjct: 74  DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ 133
Query: 121 -SG----------ALDNESEKL----------------VQAALESACK--GRTVLMIAH- 150
            SG          AL  E E L                V+A L+   K  G T + + H 
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD 193
Query: 151 RLSTVQNADLIVVLQAGQIVEM 172
           +   +  AD I V++ G+I+++
Sbjct: 194 QAEALAMADRIAVIREGEILQV 215

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 45/203 (22%)
Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG---TWL 68
           LK+ NL I  G+ V+I+G SG+GKST++ ++      + G + I  +    LD    T +
Sbjct: 21  LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 69  RGNVIGLINQE---------------PVLF----ATSVRENIRYGDSSVSDEQIEE---- 105
           R + IG + Q+               P++F    A S  E  +     +   ++EE    
Sbjct: 81  RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 106 ----------------AAKLANAHGFI-SEFPSGALDNES-EKLVQAALE-SACKGRTVL 146
                           A  LAN    I ++ P+ ALD+++ EK++Q   + +   G+TV+
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVV 200
Query: 147 MIAHRLSTVQNADLIVVLQAGQI 169
           ++ H ++  +  + I+ L+ G++
Sbjct: 201 VVTHDINVARFGERIIYLKDGEV 223

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 25/182 (13%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--- 67
           +LKD N +I  GQ +A+ GS+G GK++++ ++    + S G I  SG        +W   
Sbjct: 53  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP 112
Query: 68  --LRGNVIGLINQE----PVLFATSVRE---------NIRYGDSSVSDEQIEEA------ 106
             ++ N+IG+   E     V+ A  + E         NI  G+  ++    + A      
Sbjct: 113 GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 172
Query: 107 AKLANAHGFISEFPSGALDNESEK-LVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 165
           A   +A  ++ + P G LD  +EK + ++ +      +T +++  ++  ++ AD I++L 
Sbjct: 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232
Query: 166 AG 167
            G
Sbjct: 233 EG 234

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 25/182 (13%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--- 67
           +LKD N +I  GQ +A+ GS+G GK++++ ++    + S G I  SG        +W   
Sbjct: 53  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP 112
Query: 68  --LRGNVIGLINQE----PVLFATSVRE---------NIRYGDSSVSDEQIEEA------ 106
             ++ N+IG+   E     V+ A  + E         NI  G+  ++    + A      
Sbjct: 113 GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 172
Query: 107 AKLANAHGFISEFPSGALDNESEK-LVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 165
           A   +A  ++ + P G LD  +EK + ++ +      +T +++  ++  ++ AD I++L 
Sbjct: 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232
Query: 166 AG 167
            G
Sbjct: 233 EG 234

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 44/200 (22%)
Query: 13  KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNV 72
           KD NL I  G+ V  VG SG GKST++ ++     ++SG++ I     K ++ T      
Sbjct: 20  KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE---KRMNDTPPAERG 76
Query: 73  IGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAA------------------ 107
           +G++ Q   L+   SV EN+ +G         V ++++ + A                  
Sbjct: 77  VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSG 136
Query: 108 ----KLANAHGFISEFPSGALDNESEKLVQAALESACK----------GRTVLMIAH-RL 152
               ++A     ++E PS  L +E    + AAL    +          GRT++ + H ++
Sbjct: 137 GQRQRVAIGRTLVAE-PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195
Query: 153 STVQNADLIVVLQAGQIVEM 172
             +  AD IVVL AG++ ++
Sbjct: 196 EAMTLADKIVVLDAGRVAQV 215

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 25/182 (13%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--- 67
           +LKD N +I  GQ +A+ GS+G GK++++ ++    + S G I  SG        +W   
Sbjct: 23  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 82
Query: 68  --LRGNVIGLINQE----PVLFATSVRE---------NIRYGDSSVSDEQIEEA------ 106
             ++ N+IG+   E     V+ A  + E         NI  G+  ++    + A      
Sbjct: 83  GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 142
Query: 107 AKLANAHGFISEFPSGALDNESEK-LVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 165
           A   +A  ++ + P G LD  +EK + ++ +      +T +++  ++  ++ AD I++L 
Sbjct: 143 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 202
Query: 166 AG 167
            G
Sbjct: 203 EG 204

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 44/200 (22%)
Query: 13  KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNV 72
           KD NL I  G+ V  VG SG GKST++ ++     ++SG++ I     K ++ T      
Sbjct: 20  KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE---KRMNDTPPAERG 76
Query: 73  IGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAA------------------ 107
           +G++ Q   L+   SV EN+ +G         V ++++ + A                  
Sbjct: 77  VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSG 136
Query: 108 ----KLANAHGFISEFPSGALDNESEKLVQAALESACK----------GRTVLMIAH-RL 152
               ++A     ++E PS  L +E    + AAL    +          GRT++ + H ++
Sbjct: 137 GQRQRVAIGRTLVAE-PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195
Query: 153 STVQNADLIVVLQAGQIVEM 172
             +  AD IVVL AG++ ++
Sbjct: 196 EAMTLADKIVVLDAGRVAQV 215

>pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 40/190 (21%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +LKD N +I  GQ +A+ GS+G GK++++ ++    + S G I  SG        +W+  
Sbjct: 53  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 71  NVIGLINQEPVLFATSV-----------------------RENIRYGDSSVSDEQIEEA- 106
             I    +E ++F  S                        ++NI  G+  ++  + ++A 
Sbjct: 113 GTI----KENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAK 168
Query: 107 -----AKLANAHGFISEFPSGALDNESEKLVQAALESA-CK---GRTVLMIAHRLSTVQN 157
                A   +A  ++ + P G LD  +EK +    ES  CK    +T +++  ++  ++ 
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVLTEKEI---FESCVCKLMANKTRILVTSKMEHLKK 225
Query: 158 ADLIVVLQAG 167
           AD I++L  G
Sbjct: 226 ADKILILHEG 235

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 87/218 (39%), Gaps = 48/218 (22%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR- 69
           +LK  N+ I  G+ V ++G SG+GKST +  L    D   G I I G++LK  D    + 
Sbjct: 18  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 70  GNVIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLA-----------NAHGF-- 115
              +G++ Q   LF   +V  NI      V     E+A   A            AH +  
Sbjct: 78  REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 137
Query: 116 -----------------------ISEFPSGALDNESEKLVQAALES-ACKGRTVLMIAHR 151
                                  + + P+ ALD E    V + ++  A +G T++++ H 
Sbjct: 138 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 197
Query: 152 LSTVQN-ADLIVVLQAGQIVEM--------LGQHENTR 180
           +   +   D ++ +  G I+E           QHE T+
Sbjct: 198 MGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTK 235

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 87/218 (39%), Gaps = 48/218 (22%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR- 69
           +LK  N+ I  G+ V ++G SG+GKST +  L    D   G I I G++LK  D    + 
Sbjct: 39  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 70  GNVIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLA-----------NAHGF-- 115
              +G++ Q   LF   +V  NI      V     E+A   A            AH +  
Sbjct: 99  REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 158
Query: 116 -----------------------ISEFPSGALDNESEKLVQAALES-ACKGRTVLMIAHR 151
                                  + + P+ ALD E    V + ++  A +G T++++ H 
Sbjct: 159 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218
Query: 152 LSTVQN-ADLIVVLQAGQIVEM--------LGQHENTR 180
           +   +   D ++ +  G I+E           QHE T+
Sbjct: 219 MGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTK 256

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 44/200 (22%)
Query: 13  KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNV 72
           KD NL I  G+ V  VG SG GKST++ ++     ++SG++ I     K ++ T      
Sbjct: 20  KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE---KRMNDTPPAERG 76
Query: 73  IGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAA------------------ 107
           +G++ Q   L+   SV EN+ +G         V ++++ + A                  
Sbjct: 77  VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSG 136
Query: 108 ----KLANAHGFISEFPSGALDNESEKLVQAALESACK----------GRTVLMIAH-RL 152
               ++A     ++E PS  L ++    + AAL    +          GRT++ + H ++
Sbjct: 137 GQRQRVAIGRTLVAE-PSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195
Query: 153 STVQNADLIVVLQAGQIVEM 172
             +  AD IVVL AG++ ++
Sbjct: 196 EAMTLADKIVVLDAGRVAQV 215

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 38/189 (20%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +LKD N +I  GQ +A+ GS+G GK++++ ++    + S G I  SG        +W+  
Sbjct: 35  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 94
Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEE-AAKLA------------------- 110
             I    +E ++F  S  E  RY  S +   Q+EE  +K A                   
Sbjct: 95  GTI----KENIIFGVSYDE-YRY-RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 148
Query: 111 -----------NAHGFISEFPSGALDNESEK-LVQAALESACKGRTVLMIAHRLSTVQNA 158
                      +A  ++ + P G LD  +EK + ++ +      +T +++  ++  ++ A
Sbjct: 149 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA 208
Query: 159 DLIVVLQAG 167
           D I++L  G
Sbjct: 209 DKILILHEG 217

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 38/189 (20%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +LKD N +I  GQ +A+ GS+G GK++++ ++    + S G I  SG        +W+  
Sbjct: 23  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 82
Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEE-AAKLA------------------- 110
             I    +E ++F  S  E  RY  S +   Q+EE  +K A                   
Sbjct: 83  GTI----KENIIFGVSYDE-YRY-RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 136
Query: 111 -----------NAHGFISEFPSGALDNESEK-LVQAALESACKGRTVLMIAHRLSTVQNA 158
                      +A  ++ + P G LD  +EK + ++ +      +T +++  ++  ++ A
Sbjct: 137 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA 196
Query: 159 DLIVVLQAG 167
           D I++L  G
Sbjct: 197 DKILILHEG 205

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 87/186 (46%), Gaps = 32/186 (17%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--- 67
           +LKD N +I  GQ +A+ GS+G GK++++ ++    + S G I  SG        +W   
Sbjct: 53  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 68  --LRGNVIGLINQEPVLFATSV--------------RENIRYGDSSVSDEQIEEA----- 106
             ++ N+I  ++ +   + + +              ++NI  G+  ++    + A     
Sbjct: 113 GTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 172
Query: 107 -AKLANAHGFISEFPSGALDNESEKLVQAALESA-CK---GRTVLMIAHRLSTVQNADLI 161
            A   +A  ++ + P G LD  +EK +    ES  CK    +T +++  ++  ++ AD I
Sbjct: 173 RAVYKDADLYLLDSPFGYLDVLTEKEI---FESCVCKLMANKTRILVTSKMEHLKKADKI 229
Query: 162 VVLQAG 167
           ++L  G
Sbjct: 230 LILHEG 235

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 28/195 (14%)
Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
           R     L      IP G  VA+VG  G GKS++++ L    D   G++ I G        
Sbjct: 15  RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQ 74
Query: 66  TW-----LRGNVI-GLINQEP----VLFATSVRENIRYGDSSVSDEQIEEAAKLA----- 110
            W     LR N++ G   +EP    V+ A ++  ++    S    E  E+   L+     
Sbjct: 75  AWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ 134
Query: 111 ----------NAHGFISEFPSGALDNESEKLVQAAL---ESACKGRTVLMIAHRLSTVQN 157
                     NA  ++ + P  A+D    K +   +   +   K +T +++ H +S +  
Sbjct: 135 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQ 194
Query: 158 ADLIVVLQAGQIVEM 172
            D+I+V+  G+I EM
Sbjct: 195 VDVIIVMSGGKISEM 209

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--- 67
           +LK+ NL I  G+ +AI GS+G+GK++++ L+    + S G I  SG        +W   
Sbjct: 53  VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 68  --LRGNVIGL---------------INQEPVLFATSVRENIRYGDSSVSDEQIEEA---- 106
             ++ N+IG+               + Q+   FA   ++N   G+  V+    + A    
Sbjct: 113 GTIKENIIGVSYDEYRYKSVVKACQLQQDITKFAE--QDNTVLGEGGVTLSGGQRARISL 170
Query: 107 --AKLANAHGFISEFPSGALDNESEKLVQAALESACK---GRTVLMIAHRLSTVQNADLI 161
             A   +A  ++ + P G LD  +E+  Q      CK    +T +++  ++  ++ AD I
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVFTEE--QVFESCVCKLMANKTRILVTSKMEHLRKADKI 228
Query: 162 VVLQAG 167
           ++L  G
Sbjct: 229 LILHQG 234

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%)
Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           + ++ D +L I +G+ VAI+G +G GKST++ LL  +   S G   + G +L       L
Sbjct: 24  QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKAL 83
Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEA 106
                 +     + F  SV E I+ G +     Q  +A
Sbjct: 84  ARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQA 121

>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 30/185 (16%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--- 67
           +LK+ NL I  G+ +AI GS+G+GK++++ L+    + S G I  SG        +W   
Sbjct: 53  VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 68  --LRGNVIGLINQEPVLFATSVR--------------ENIRYGDSSVSDEQIEEA----- 106
             ++ N+I  ++ +   + + V+              +N   G+  V+    + A     
Sbjct: 113 GTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLA 172
Query: 107 -AKLANAHGFISEFPSGALDNESEKLVQAALESACK---GRTVLMIAHRLSTVQNADLIV 162
            A   +A  ++ + P G LD  +E+  Q      CK    +T +++  ++  ++ AD I+
Sbjct: 173 RAVYKDADLYLLDSPFGYLDVFTEE--QVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 163 VLQAG 167
           +L  G
Sbjct: 231 ILHQG 235

>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 40/190 (21%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +LK+ NL I  G+ +AI GS+G+GK++++ L+    + S G I  SG        +W+  
Sbjct: 53  VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLA-------------------- 110
             I    +E ++F  S  E  RY     + +  ++  K A                    
Sbjct: 113 GTI----KENIIFGVSYDE-YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 167
Query: 111 ----------NAHGFISEFPSGALDNESEKLVQAALESACK---GRTVLMIAHRLSTVQN 157
                     +A  ++ + P G LD  +E+  Q      CK    +T +++  ++  ++ 
Sbjct: 168 RISLARAVYKDADLYLLDSPFGYLDVFTEE--QVFESCVCKLMANKTRILVTSKMEHLRK 225
Query: 158 ADLIVVLQAG 167
           AD I++L  G
Sbjct: 226 ADKILILHQG 235

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 86/201 (42%), Gaps = 41/201 (20%)
Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG- 70
           L + +L +PAGQ   ++G+SG GKST++  +      + G++ + G +L  L  + L   
Sbjct: 44  LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 71  -NVIGLINQE---------------PVLFATSVRENIR-----------YGDSSVS---- 99
              IG+I Q                P+    + ++ ++            GD   S    
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 163
Query: 100 -----DEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESACK--GRTVLMIAHR 151
                 +++  A  LA N    + +  + ALD  + + +   L+   +  G T+L+I H 
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223
Query: 152 LSTVQN-ADLIVVLQAGQIVE 171
           +  V+   D + V+  G+++E
Sbjct: 224 MDVVKRICDCVAVISNGELIE 244

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 86/201 (42%), Gaps = 41/201 (20%)
Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG- 70
           L + +L +PAGQ   ++G+SG GKST++  +      + G++ + G +L  L  + L   
Sbjct: 21  LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 71  -NVIGLINQE---------------PVLFATSVRENIR-----------YGDSSVS---- 99
              IG+I Q                P+    + ++ ++            GD   S    
Sbjct: 81  RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 140
Query: 100 -----DEQIEEAAKLA-NAHGFISEFPSGALDNESEKLVQAALESACK--GRTVLMIAHR 151
                 +++  A  LA N    + +  + ALD  + + +   L+   +  G T+L+I H 
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE 200
Query: 152 LSTVQN-ADLIVVLQAGQIVE 171
           +  V+   D + V+  G+++E
Sbjct: 201 MDVVKRICDCVAVISNGELIE 221

>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 40/190 (21%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +LK+ NL I  G+ +AI GS+G+GK++++ L+    + S G I  SG        +W+  
Sbjct: 53  VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLA-------------------- 110
             I    +E ++F  S  E  RY     + +  ++  K A                    
Sbjct: 113 GTI----KENIIFGVSYDE-YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 167
Query: 111 ----------NAHGFISEFPSGALDNESEKLVQAALESACK---GRTVLMIAHRLSTVQN 157
                     +A  ++ + P G LD  +E+  Q      CK    +T +++  ++  ++ 
Sbjct: 168 RISLARAVYKDADLYLLDSPFGYLDVFTEE--QVFESCVCKLMANKTRILVTSKMEHLRK 225
Query: 158 ADLIVVLQAG 167
           AD I++L  G
Sbjct: 226 ADKILILHQG 235

>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 30/185 (16%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--- 67
           +LK+ NL I  G+ +AI GS+G+GK++++ L+    + S G I  SG        +W   
Sbjct: 53  VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 68  --LRGNVIGLINQEPVLFATSVR--------------ENIRYGDSSVSDEQIEEA----- 106
             ++ N+I  ++ +   + + V+              +N   G+  V+    + A     
Sbjct: 113 GTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLA 172
Query: 107 -AKLANAHGFISEFPSGALDNESEKLVQAALESACK---GRTVLMIAHRLSTVQNADLIV 162
            A   +A  ++ + P G LD  +E+  Q      CK    +T +++  ++  ++ AD I+
Sbjct: 173 RAVYKDADLYLLDSPFGYLDVFTEE--QVFESCVCKLMANKTRILVTSKMEHLRKADKIL 230
Query: 163 VLQAG 167
           +L  G
Sbjct: 231 ILHQG 235

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 43/197 (21%)
Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +LKD N     G+   +VG +G+GK+T++ +L      ++G I + G      D   LR 
Sbjct: 26  VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEIFLDG---SPADPFLLRK 81
Query: 71  NVIGLINQEPV--LFATSVRENIRYG------DSSVSDEQIEEAAKLANAHGFIS----- 117
           NV G + Q P   +   +V E++ +       D S   ++I++  +L    G  +     
Sbjct: 82  NV-GYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLN 140
Query: 118 ------------------------EFPSGALDNESEKLVQAALES-ACKGRTVLMIAHRL 152
                                   + P   LD  S++ +   LES   +G+ ++++ H L
Sbjct: 141 LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHEL 200
Query: 153 STVQNADLIVVLQAGQI 169
             + + D I+ +  G I
Sbjct: 201 EYLDDMDFILHISNGTI 217

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	181
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	8e-91
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	4e-90
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	5e-88
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	6e-86
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	2e-82
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	4e-82
2ghi_A	260	Transport protein; multidrug resistance protein, M	4e-81
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	6e-77
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	8e-77
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	1e-76
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	2e-74
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	3e-65
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	2e-54
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	8e-34
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	9e-16
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	5e-14
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	2e-13
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	2e-12
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	5e-12
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	7e-12
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	1e-11
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	3e-11
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	3e-11
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	4e-07
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	2e-10
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	5e-10
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	8e-10
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	5e-06
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	8e-10
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	8e-10
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-10
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	9e-10
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	2e-08
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	2e-08
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	3e-08
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	6e-08
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	4e-05
1b0u_A	262	Histidine permease; ABC transporter, transport pro	8e-08
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	8e-08
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	1e-07
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	2e-07
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	2e-07
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	3e-07
1sgw_A	214	Putative ABC transporter; structural genomics, P p	5e-07
1ji0_A	240	ABC transporter; ATP binding protein, structural g	6e-07
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	9e-07
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	9e-07
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	1e-06
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	2e-06
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	9e-06
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-05
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	3e-04
1g6h_A	257	High-affinity branched-chain amino acid transport	8e-04

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score =  264 bits (677), Expect = 8e-91
 Identities = 80/208 (38%), Positives = 111/208 (53%), Gaps = 42/208 (20%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
            IL + NL I  G+ + IVG SG+GKST+  L++RFY   +G + I G DL   D  WLR
Sbjct: 23  VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82

Query: 70  GNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------- 122
              +G++ Q+ VL   S+ +NI   +  +S E++  AAKLA AH FISE   G       
Sbjct: 83  RQ-VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 141

Query: 123 ---------------------------------ALDNESEKLVQAALESACKGRTVLMIA 149
                                            ALD ESE ++   +   CKGRTV++IA
Sbjct: 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 201

Query: 150 HRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           HRLSTV+NAD I+V++ G+IVE  G+H+
Sbjct: 202 HRLSTVKNADRIIVMEKGKIVEQ-GKHK 228

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score =  263 bits (674), Expect = 4e-90
 Identities = 62/211 (29%), Positives = 92/211 (43%), Gaps = 45/211 (21%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
            +L+     +  G+  A+VG +G+GKST+ ALL+  Y  + G + + G  L   D  +L 
Sbjct: 33  QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH 92

Query: 70  GNVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
              +  + QEP+LF  S RENI YG   + + E+I   A  + AH FIS FP G      
Sbjct: 93  TQ-VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG 151

Query: 123 ----------------------------------ALDNESEKLVQAALESACK--GRTVL 146
                                             ALD  ++  VQ  L  + +   RTVL
Sbjct: 152 ETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVL 211

Query: 147 MIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           +I  +LS  + A  I+ L+ G + E  G H 
Sbjct: 212 LITQQLSLAERAHHILFLKEGSVCEQ-GTHL 241

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score =  252 bits (645), Expect = 6e-86
 Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 43/210 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           + IL+D +        +A  G SG GKSTI +LLERFY  ++G ITI G  + ++     
Sbjct: 15  EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENW 74

Query: 69  RGNVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSG----- 122
           R   IG ++Q+  + A ++REN+ YG +   +DE + +   LA A  F+   P       
Sbjct: 75  RSQ-IGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEV 133

Query: 123 -----------------------------------ALDNESEKLVQAALESACKGRTVLM 147
                                              +LD+ESE +VQ AL+S  KGRT L+
Sbjct: 134 GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLV 193

Query: 148 IAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           IAHRLST+ +AD I  ++ GQI    G+H 
Sbjct: 194 IAHRLSTIVDADKIYFIEKGQITGS-GKHN 222

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  263 bits (675), Expect = 2e-82
 Identities = 89/212 (41%), Positives = 123/212 (58%), Gaps = 42/212 (19%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
           R+   ILK  NL++ +GQ VA+VG+SG GKST V L++R YD   G ++I G D++ ++ 
Sbjct: 400 RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINV 459

Query: 66  TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--- 122
            +LR   IG+++QEPVLFAT++ ENIRYG   V+ ++IE+A K ANA+ FI + P     
Sbjct: 460 RYLREI-IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDT 518

Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
                                                ALD ESE +VQAAL+ A +GRT 
Sbjct: 519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTT 578

Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           ++IAHRLSTV+NAD+I     G IVE  G H+
Sbjct: 579 IVIAHRLSTVRNADVIAGFDGGVIVEQ-GNHD 609

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  263 bits (673), Expect = 4e-82
 Identities = 90/214 (42%), Positives = 121/214 (56%), Gaps = 44/214 (20%)

Query: 6    RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
            R    +L+  +L +  GQ +A+VGSSG GKST+V LLERFYD  +G++ + G ++K L+ 
Sbjct: 1043 RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV 1102

Query: 66   TWLRGNVIGLINQEPVLFATSVRENIRYG--DSSVSDEQIEEAAKLANAHGFISEFPSG- 122
             WLR   +G+++QEP+LF  S+ ENI YG     VS E+I  AAK AN H FI   P   
Sbjct: 1103 QWLRAQ-LGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKY 1161

Query: 123  ---------------------------------------ALDNESEKLVQAALESACKGR 143
                                                   ALD ESEK+VQ AL+ A +GR
Sbjct: 1162 NTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGR 1221

Query: 144  TVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
            T ++IAHRLST+QNADLIVV+Q G++ E  G H+
Sbjct: 1222 TCIVIAHRLSTIQNADLIVVIQNGKVKEH-GTHQ 1254

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score =  240 bits (614), Expect = 4e-81
 Identities = 69/212 (32%), Positives = 106/212 (50%), Gaps = 43/212 (20%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
           +     LK  N  IP+G   A+VG +G+GKSTI  LL RFYD   G+I I G ++   + 
Sbjct: 30  QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNR 88

Query: 66  TWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG--- 122
             +R   IG++ Q+ +LF  +++ NI YG    +DE++ +A K A  + FI   P     
Sbjct: 89  NSIRSI-IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDT 147

Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
                                                +LD+++E L Q A+E   K RT+
Sbjct: 148 IVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTL 207

Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           ++IAHRLST+ +A+ I++L  G+IVE  G H+
Sbjct: 208 IIIAHRLSTISSAESIILLNKGKIVEK-GTHK 238

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score =  239 bits (612), Expect = 6e-77
 Identities = 79/210 (37%), Positives = 109/210 (51%), Gaps = 43/210 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K  L   +  IP G+ VA+VG SG+GKSTI  L  RFYDV SG+I + G D++    T L
Sbjct: 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL 415

Query: 69  RGNVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSG----- 122
           R +   L++Q   LF  ++  NI Y  +   + EQIE+AA+ A+A  FI   P G     
Sbjct: 416 RRH-FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVI 474

Query: 123 -----------------------------------ALDNESEKLVQAALESACKGRTVLM 147
                                              ALD ESE+ +QAAL+   K +TVL+
Sbjct: 475 GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLV 534

Query: 148 IAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           IAHRLST++ AD I+V+  G+I+E  G+H 
Sbjct: 535 IAHRLSTIEQADEILVVDEGEIIER-GRHA 563

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score =  239 bits (611), Expect = 8e-77
 Identities = 83/210 (39%), Positives = 113/210 (53%), Gaps = 43/210 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
              L++ NL+IPAG+ VA+VG SG+GKSTI +L+ RFYD+  G+I + G DL+      L
Sbjct: 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 415

Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDS-SVSDEQIEEAAKLANAHGFISEFPSG----- 122
           R   + L++Q   LF  +V  NI Y  +   S EQIEEAA++A A  FI++  +G     
Sbjct: 416 RNQ-VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTII 474

Query: 123 -----------------------------------ALDNESEKLVQAALESACKGRTVLM 147
                                              ALD ESE+ +QAAL+   K RT L+
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV 534

Query: 148 IAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           IAHRLST++ AD IVV++ G IVE  G H 
Sbjct: 535 IAHRLSTIEQADEIVVVEDGIIVER-GTHS 563

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score =  238 bits (610), Expect = 1e-76
 Identities = 87/209 (41%), Positives = 114/209 (54%), Gaps = 42/209 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
             ILKD NL I  G+ VA VG SG GKST++ L+ RFYDV+SG I I G ++K      L
Sbjct: 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL 413

Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
           R   IGL+ Q+ +LF+ +V+ENI  G  + +DE++ EAAK+ANAH FI   P G      
Sbjct: 414 RNQ-IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVG 472

Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
                                             ALD ESE ++Q AL+   K RT L++
Sbjct: 473 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIV 532

Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           AHRLST+ +AD IVV++ G IVE  G H 
Sbjct: 533 AHRLSTITHADKIVVIENGHIVET-GTHR 560

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score =  225 bits (575), Expect = 2e-74
 Identities = 78/209 (37%), Positives = 112/209 (53%), Gaps = 42/209 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           +  L+D +  +  GQ +A+VG SG GKSTI+ LL RFYD+SSG I I G D+  +    L
Sbjct: 67  RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASL 126

Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
           R + IG++ Q+ VLF  ++ +NIRYG  +  ++++E AA+ A  H  I  FP G      
Sbjct: 127 RSH-IGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVG 185

Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
                                             ALD  +E+ +QA+L   C  RT +++
Sbjct: 186 ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVV 245

Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           AHRLSTV NAD I+V++ G IVE  G+HE
Sbjct: 246 AHRLSTVVNADQILVIKDGCIVER-GRHE 273

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score =  209 bits (534), Expect = 3e-65
 Identities = 82/209 (39%), Positives = 126/209 (60%), Gaps = 42/209 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K +LKD    I  GQKVA+VG +G+GK+TIV LL RFYDV  G I + G+D++ +  + L
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427

Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG------ 122
           R + IG++ Q+ +LF+T+V+EN++YG+   +DE+I+EAAKL ++  FI   P G      
Sbjct: 428 RSS-IGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLT 486

Query: 123 ----------------------------------ALDNESEKLVQAALESACKGRTVLMI 148
                                              +D ++EK +QAA+    +G+T ++I
Sbjct: 487 DNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIII 546

Query: 149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           AHRL+T++NADLI+VL+ G+IVEM G+H+
Sbjct: 547 AHRLNTIKNADLIIVLRDGEIVEM-GKHD 574

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score =  180 bits (459), Expect = 2e-54
 Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 42/207 (20%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
           +L   N  +  G  VA++G +G+GKST++ L+ R  D   G + +  +D++ +    LR 
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR- 416

Query: 71  NVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFP---------- 120
             I  + QE VLF+ +++EN+++G    +D++I EAAK+A  H FI   P          
Sbjct: 417 GHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERG 476

Query: 121 ----SG--------------------------ALDNESEKLVQAALESACKGRTVLMIAH 150
               SG                          ++D  +EK +   L+   KG T  +I  
Sbjct: 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQ 536

Query: 151 RLSTVQNADLIVVLQAGQIVEMLGQHE 177
           ++ T   AD I+VL  G++    G H+
Sbjct: 537 KIPTALLADKILVLHEGKVAGF-GTHK 562

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score =  122 bits (307), Expect = 8e-34
 Identities = 42/206 (20%), Positives = 85/206 (41%), Gaps = 47/206 (22%)

Query: 8   LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW 67
              IL++ +  I  GQ+V ++G +G+GKST+++   R  + + G I I GV    +    
Sbjct: 33  GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91

Query: 68  LRGNVIGLINQEPVLFATSVRENIRYGD--SSVSDEQIEEAAKLANAHGFISEFPSG--- 122
            R    G+I Q+  +F+ + R+N+   D  ++ SD++I + A        I +FP     
Sbjct: 92  WRKA-FGVIPQKVFIFSGTFRKNL---DPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDF 147

Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
                                                 LD  + ++++  L+ A    TV
Sbjct: 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTV 207

Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVE 171
           ++   R+  +   D  +V++  ++ +
Sbjct: 208 ILCEARIEAMLECDQFLVIEENKVRQ 233

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 71.8 bits (177), Expect = 9e-16
 Identities = 41/201 (20%), Positives = 74/201 (36%), Gaps = 43/201 (21%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT--WLR 69
           LK  N+ I  G+  AI+G +G GKST+          SSG I      + +       LR
Sbjct: 24  LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83

Query: 70  GNVIGLINQEPV--LFATSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFP- 120
            ++ G++ Q+P   LF+ SV +++ +G            ++++ A K         +   
Sbjct: 84  ESI-GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTH 142

Query: 121 --SG--------------------------ALDNESEKLVQAALESACK--GRTVLMIAH 150
             S                            LD      +   L    K  G T+++  H
Sbjct: 143 CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH 202

Query: 151 RLSTV-QNADLIVVLQAGQIV 170
            +  V    D + V++ G+++
Sbjct: 203 DIDIVPLYCDNVFVMKEGRVI 223

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 67.0 bits (164), Expect = 5e-14
 Identities = 29/207 (14%), Positives = 67/207 (32%), Gaps = 45/207 (21%)

Query: 3   GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62
                 +  L++ NL +  G+KV I+G +G+GK+T++  +       SGNI I+G++++ 
Sbjct: 12  SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP-YSGNIFINGMEVRK 69

Query: 63  LDGTWLRGNVIGLINQEPVLFA--TSVRENIRYG--DSSVSDEQIEEAAKLAN-AHGFIS 117
           +       N I      P  +    +V + +        +  +   E  K        + 
Sbjct: 70  IR------NYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR 123

Query: 118 EFPS-----------------------------GALDNESEKLVQAALESACKGRTVLMI 148
                                              +D     ++   ++    G+  +++
Sbjct: 124 RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--GKEGILV 181

Query: 149 AHRLSTVQN-ADLIVVLQAGQIVEMLG 174
            H L  +    +       G  ++   
Sbjct: 182 THELDMLNLYKEYKAYFLVGNRLQGPI 208

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 65.3 bits (160), Expect = 2e-13
 Identities = 45/202 (22%), Positives = 85/202 (42%), Gaps = 44/202 (21%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K  L++ +L I  G+ + + G++G+GKST++ ++    + +SG++   G   K  +   +
Sbjct: 20  KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---I 76

Query: 69  RGNVIGLINQEPV--LFATSVRENIRYG-----DSSVSDEQIEEAAKLAN--AHGFISEF 119
           R N+ G+  Q P    FA  V + + +              +++A +        F    
Sbjct: 77  RRNI-GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRV 135

Query: 120 P---SG--------------------------ALDNESEKLVQAALES-ACKGRTVLMIA 149
           P   SG                           LD E +  +   +E     G+TV++I+
Sbjct: 136 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195

Query: 150 HRLSTV-QNADLIVVLQAGQIV 170
           H + TV  + D +VVL+ G+ V
Sbjct: 196 HDIETVINHVDRVVVLEKGKKV 217

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 62.2 bits (152), Expect = 2e-12
 Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 53/211 (25%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDG- 65
             LK+ NL I  G+ V+I+G SG+GKST   I+  L++    + G + I  +    LD  
Sbjct: 19  YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTNDLDDD 75

Query: 66  --TWLRGNVIGLINQEPVLFA-TSVREN-----IRYGDSSVSDEQIEEAAK--------- 108
             T +R + IG + Q+  L    +  EN     I     ++S E+  + A          
Sbjct: 76  ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE 135

Query: 109 ------------------------LANAHGFI--SEFPSGALDNESEKLVQAALES--AC 140
                                   LAN    I   + P+ ALD+++ + +   L+     
Sbjct: 136 ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ-PTWALDSKTGEKIMQLLKKLNEE 194

Query: 141 KGRTVLMIAHRLSTVQNADLIVVLQAGQIVE 171
            G+TV+++ H ++  +  + I+ L+ G++  
Sbjct: 195 DGKTVVVVTHDINVARFGERIIYLKDGEVER 225

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 61.0 bits (149), Expect = 5e-12
 Identities = 34/202 (16%), Positives = 72/202 (35%), Gaps = 42/202 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
            T L   +  + AG+ + +VG +G GKST++A +        G+I  +G  L+       
Sbjct: 13  STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWS-ATK 70

Query: 69  RGNVIGLINQEPVL-FATSVRENIRYGDSSVSDEQI-EEAAKLANAHGFISEF------- 119
                  ++Q+    FAT V   +       +  ++  + A        +          
Sbjct: 71  LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGG 130

Query: 120 -----------------------------PSGALD-NESEKLVQAALESACKGRTVLMIA 149
                                        P  +LD  +   L +     + +G  ++M +
Sbjct: 131 EWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSS 190

Query: 150 HRLS-TVQNADLIVVLQAGQIV 170
           H L+ T+++A    +L+ G+++
Sbjct: 191 HDLNHTLRHAHRAWLLKGGKML 212

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 61.1 bits (149), Expect = 7e-12
 Identities = 41/214 (19%), Positives = 80/214 (37%), Gaps = 55/214 (25%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW- 67
           KTILK  + +I  G K  + G +G GK+T++ +L  +   +SG + + G     +  +  
Sbjct: 34  KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAE 93

Query: 68  -LRGNVIGLINQE---PVLFATSVRENI---------RYGDSSVSDEQIEEAAKLANAHG 114
            +R + IG ++            V + +          Y D  + DE   EA +L    G
Sbjct: 94  TVRQH-IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQD--IDDEIRNEAHQLLKLVG 150

Query: 115 FISEF---------------------------------PSGALDNESEKLVQAALESAC- 140
            +S                                   P+  LD  + + + + L+S   
Sbjct: 151 -MSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSD 209

Query: 141 --KGRTVLMIAHRLSTV-QNADLIVVLQAGQIVE 171
                 ++ + H +  +  N   I++L+ GQ ++
Sbjct: 210 SYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ 243

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 49/205 (23%)

Query: 12  LKDFNLRIPAGQKVAIVGSSGNGKSTIV---ALLERFYDVSSGNITISGVDLKHLDGTWL 68
           L + +L +PAGQ   ++G+SG GKST++    LLER    + G++ + G +L  L  + L
Sbjct: 44  LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP---TEGSVLVDGQELTTLSESEL 100

Query: 69  RGN--VIGLINQEPVLFAT-SVRENIRYG--DSSVSDEQIEEAAK-------LAN-AHGF 115
                 IG+I Q   L ++ +V  N+       +   ++++           L +    +
Sbjct: 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY 160

Query: 116 ISEFPSG--------------------------ALDNESEKLVQAALESACK--GRTVLM 147
            S   SG                          ALD  + + +   L+   +  G T+L+
Sbjct: 161 PSNL-SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219

Query: 148 IAHRLSTVQN-ADLIVVLQAGQIVE 171
           I H +  V+   D + V+  G+++E
Sbjct: 220 ITHEMDVVKRICDCVAVISNGELIE 244

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 59.1 bits (144), Expect = 3e-11
 Identities = 42/207 (20%), Positives = 81/207 (39%), Gaps = 52/207 (25%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDG-- 65
           ILK  +L +  G+ V+I+G+SG+GKST   I+ LL+     + G + + G ++ + +   
Sbjct: 19  ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEKE 75

Query: 66  -TWLRGNVIGLINQEPVLFA-TSVRENI----RYGDSSVSDEQIEEAAK----------- 108
            + LR   +G + Q   L    +  EN+             ++ +E  +           
Sbjct: 76  LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG--KPKKEAKERGEYLLSELGLGDK 133

Query: 109 ---------------------LANAHGFI--SEFPSGALDNESEKLVQAALES-ACKGRT 144
                                LAN    +   E P+G LD+ + K V          G +
Sbjct: 134 LSRKPYELSGGEQQRVAIARALANEPILLFADE-PTGNLDSANTKRVMDIFLKINEGGTS 192

Query: 145 VLMIAHRLSTVQNADLIVVLQAGQIVE 171
           ++M+ H     +     + ++ G++V 
Sbjct: 193 IVMVTHERELAELTHRTLEMKDGKVVG 219

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 35/206 (16%), Positives = 66/206 (32%), Gaps = 48/206 (23%)

Query: 12  LKDFNLRIP-AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
            K F L  P     + ++G +G GK+T++ +L      + G+        + L     RG
Sbjct: 14  FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLK--RFRG 71

Query: 71  NVIGLINQEPVLFATSVRENIRYGDS-------SVSD--------EQIEEAAKLANAHGF 115
             I    +E       +   I+Y +        +V++         + +E  +L N    
Sbjct: 72  KEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNL 131

Query: 116 ----ISEF-------------------------PSGALDNESEKLVQAALESACKGRTVL 146
                +                           PS  LD      +  A+    K + V+
Sbjct: 132 WNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVI 191

Query: 147 MIAHRLSTVQN-ADLIVVLQAGQIVE 171
           ++ H L  +    DLI ++     V 
Sbjct: 192 VVDHDLIVLDYLTDLIHIIYGESSVY 217

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 39/198 (19%), Positives = 63/198 (31%), Gaps = 48/198 (24%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
              L   N     G+ + I+G +G GK+T   +L        G++T     L +      
Sbjct: 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIF 340

Query: 69  ---RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFP---SG 122
               G V     Q+      + ++ +     S S    EE  K  N H  +       SG
Sbjct: 341 PNYDGTV-----QQ--YLENASKDAL-----STSSWFFEEVTKRLNLHRLLESNVNDLSG 388

Query: 123 --------------------------ALDNESEKLVQAALESACK--GRTVLMIAHRLST 154
                                      LD E   +V  A++   +       +I H LS 
Sbjct: 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI 448

Query: 155 VQN-ADLIVVLQAGQIVE 171
               AD I+V + G+  +
Sbjct: 449 HDYIADRIIVFK-GEPEK 465

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 14/84 (16%)

Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
          +LKD N +I  GQ +A+ GS+G GK++++ ++    + S G I  SG             
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69

Query: 71 NVIGLINQEPVLFATSVRENIRYG 94
            I   +Q   +   +++ENI +G
Sbjct: 70 -RISFCSQFSWIMPGTIKENIIFG 92

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 55.6 bits (135), Expect = 5e-10
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 14/89 (15%)

Query: 6  RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
          R     L      IP G  VA+VG  G GKS++++ L    D   G++ I G        
Sbjct: 15 RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------- 66

Query: 66 TWLRGNVIGLINQEPVLFATSVRENIRYG 94
                 +  + Q+  +   S+RENI +G
Sbjct: 67 ------SVAYVPQQAWIQNDSLRENILFG 89

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 55.8 bits (135), Expect = 8e-10
 Identities = 39/205 (19%), Positives = 68/205 (33%), Gaps = 42/205 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIV-----ALLERFYDVS-SGNITISGVDLKH 62
              +      +  G  V IVG +G GK+T V      L+    + + S +  I       
Sbjct: 104 NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE 163

Query: 63  LDG--TWLRGNVIGLINQE------PVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHG 114
           L      L+   I  + +       P      VRE ++  D     E++ +  +L N   
Sbjct: 164 LQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD 223

Query: 115 -FISEF-------------------------PSGALDNESEKLVQAALES-ACKGRTVLM 147
             + +                          PS  LD      V   +   A +G+ VL+
Sbjct: 224 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 283

Query: 148 IAHRLSTVQN-ADLIVVLQAGQIVE 171
           + H L+ +   +D+I V+     V 
Sbjct: 284 VEHDLAVLDYLSDVIHVVYGEPGVY 308

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57
              L+     I  G+ + IVG +G GK+T V +L    + + G +    
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL 417

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 55.8 bits (135), Expect = 8e-10
 Identities = 27/197 (13%), Positives = 55/197 (27%), Gaps = 47/197 (23%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
             +L          + + ++G +G GK+T++ LL        G   I  +++       +
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-IPKLNVS------M 417

Query: 69  RGNVIGLINQEPV--LFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFP---SG- 122
           +   I       V  LF   +R          + +   +  K       I +     SG 
Sbjct: 418 KPQKIAPKFPGTVRQLFFKKIRGQFL------NPQFQTDVVKPLRIDDIIDQEVQHLSGG 471

Query: 123 -------------------------ALDNESEKLVQAALESACK--GRTVLMIAHRLSTV 155
                                     LD+E   +    +        +T  ++ H     
Sbjct: 472 ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMA 531

Query: 156 QN-ADLIVVLQAGQIVE 171
              AD ++V +      
Sbjct: 532 TYLADKVIVFEGIPSKN 548

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 55.8 bits (135), Expect = 8e-10
 Identities = 28/211 (13%), Positives = 63/211 (29%), Gaps = 49/211 (23%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD---LKHLDGT 66
           +           GQ + +VG++G GKST + +L      + G           +K+  G+
Sbjct: 91  SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGS 150

Query: 67  WLRGNVIGLINQEPV---------LFATSVRENIRYGD--SSVSDEQI-EEAAKLANAHG 114
            L+     ++  +               +++  ++       +  E+  E+  +      
Sbjct: 151 ELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQ 210

Query: 115 -------FISEF-------------------------PSGALDNESEKLVQAALESACK- 141
                   I +                          PS  LD +        + S    
Sbjct: 211 LENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP 270

Query: 142 GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
            + V+ + H LS +   +D + ++     V 
Sbjct: 271 TKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 55.4 bits (134), Expect = 8e-10
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 14/83 (16%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
             +LKD N +I  GQ +A+ GS+G GK++++ ++    + S G I  SG           
Sbjct: 51  TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99

Query: 69  RGNVIGLINQEPVLFATSVRENI 91
               I   +Q   +   +++ENI
Sbjct: 100 ---RISFCSQNSWIMPGTIKENI 119

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 9e-10
 Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 37/189 (19%)

Query: 4   NLRRLKTI--LKD--FNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD 59
           N+ RL+    L+     LR PA + V I G  G+GK+ +   +   Y V           
Sbjct: 130 NVSRLQPYLKLRQALLELR-PA-KNVLIDGVLGSGKTWVALDVCLSYKV----------- 176

Query: 60  LKHLDGT--WLR-GNVI---GLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAH 113
              +D    WL   N      ++     L            D S + +    + +     
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 114 GFISE-FPSG--ALDN-ESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQI 169
              S+ + +    L N ++ K    A   +CK   +L+      T +   +   L A   
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWN-AFNLSCK---ILL------TTRFKQVTDFLSAATT 286

Query: 170 VEMLGQHEN 178
             +   H +
Sbjct: 287 THISLDHHS 295

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 55.3 bits (134), Expect = 9e-10
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL--KHLDGTWL 68
           +LK  N+ I  G+ V ++G SG+GKST +  L    D   G I I G++L  K  +   +
Sbjct: 39  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98

Query: 69  RGNVIGLINQEPVLFA-TSVRENIRYGDSSVSDEQIEEAAKLA 110
           R  V G++ Q   LF   +V  NI      V     E+A   A
Sbjct: 99  REEV-GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA 140

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
             ++  + +I  G+ V ++G SG+GK+TI+ L+      + G++ I G  +  L     R
Sbjct: 29  RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-PQKR 87

Query: 70  GNVIGLINQEPVLFA-TSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFPS 121
              +GL+ Q   LF   +V +N+ +G           D ++ E  +      + + FP 
Sbjct: 88  N--VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH 144

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 14/93 (15%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDGT 66
            +L D +L +  G+ + I+G+SG GK+T    +A  E+     SG I++SG  +     T
Sbjct: 18  PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFS-KNT 73

Query: 67  WL----RGNVIGLINQEPVLFA-TSVRENIRYG 94
            L    R   +G + QE VLF   +V  NI YG
Sbjct: 74  NLPVRERR--LGYLVQEGVLFPHLTVYRNIAYG 104

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 19/114 (16%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDGT 66
             L + N+ I  G++  I+G SG GK+T   I+A L+     S+G +      +      
Sbjct: 19  VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD---VPSTGELYFDDRLVASNGKL 75

Query: 67  WL----RGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKL 109
            +    R   IG++ Q   L+   +  ENI +             +++EE AK+
Sbjct: 76  IVPPEDRK--IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI 127

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 40/195 (20%), Positives = 67/195 (34%), Gaps = 42/195 (21%)

Query: 19  IPAGQKVAIVGSSGNGKSTIV-----ALLERFYD-VSSGNITISGVDLKHLDGTW--LRG 70
           +  G  V IVG +G GKST V      L+        S +  I       L   +  L+ 
Sbjct: 44  VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103

Query: 71  NVIGLINQE------PVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHG-FISEF---- 119
             I  + +       P      V E ++  D +   E++ +A +L N     I       
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGE 163

Query: 120 ---------------------PSGALDNESEKLVQAALES-ACKGRTVLMIAHRLSTVQN 157
                                PS  LD         A+   + +G++VL++ H L+ +  
Sbjct: 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDY 223

Query: 158 -ADLIVVLQAGQIVE 171
            +D+I V+     V 
Sbjct: 224 LSDIIHVVYGEPGVY 238

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG 57
              L+     I  G+ + IVG +G GK+T V +L    + + G I    
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL 347

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 49.5 bits (119), Expect = 8e-08
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)

Query: 11 ILKDFNLRIPAGQKVAIVGSSGNGKSTI---VALLERFYDVSSGNITISGVDLKH 62
          +LK  +L+  AG  ++I+GSSG+GKST    +  LE     S G I ++G ++  
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE---KPSEGAIIVNGQNINL 72

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 49.9 bits (120), Expect = 8e-08
 Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 7/117 (5%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
              L + +L++ +G+   I+G +G GK+  + L+  F+   SG I + G D+  L     
Sbjct: 13  NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-PEK 71

Query: 69  RGNVIGLINQEPVLFA-TSVRENIRYG---DSSVSDEQIEEAAKLANAHGFISEFPS 121
               I  + Q   LF   +V++N+ +G         +++ + A+       +   P 
Sbjct: 72  HD--IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL 126

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 22/113 (19%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHL--- 63
           T L + NL+I  G+ +A++G SG+GKST    +A +      +SG I     D+  L   
Sbjct: 17  TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY---KPTSGKIYFDEKDVTELPPK 73

Query: 64  DGTWLRGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKL 109
           D    R   +GL+ Q   L+   +V +NI +            D+++ E AK+
Sbjct: 74  D----RN--VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKM 120

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL---ERFYDVSSGNITISGVDLKHLD 64
          +TILK  NL +P G+  A++G +G GKST+  +L      Y V  G I + G ++  L 
Sbjct: 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENILELS 73

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL---ERFYDVSSGNITISGVDLKHLD 64
          K IL+  +L +  G+  AI+G +G+GKST+ A L   E  Y+V+ G +   G DL  L 
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLALS 90

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 47.9 bits (115), Expect = 3e-07
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 15/87 (17%)

Query: 9  KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
            + +  N  +  G  +A++G +G GKST++ LL   +    G I +             
Sbjct: 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ----------- 66

Query: 69 RGNVIGLINQEPVL-FATSVRENIRYG 94
              IG + Q     FA SV + +  G
Sbjct: 67 ---SIGFVPQFFSSPFAYSVLDIVLMG 90

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 46.7 bits (112), Expect = 5e-07
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 14/122 (11%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K +L+   + I  G  V   G +G GK+T++  +  +     G I  +GV +       +
Sbjct: 22  KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----V 76

Query: 69  RGNVIGLINQEPVLFAT-SVRENIRYG----DSSVSDEQIEEAAK---LANAHGFISEFP 120
           +G  I  + +E ++    SV + ++         V+  +I +A +   + +    + E  
Sbjct: 77  KGK-IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELS 135

Query: 121 SG 122
            G
Sbjct: 136 QG 137

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 46.7 bits (112), Expect = 6e-07
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 11  ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG 70
            +K  +L++P GQ V ++G++G GK+T ++ +        G I  +G D+ +     +  
Sbjct: 21  AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80

Query: 71  NVIGLINQEPVLFAT-SVRENIRYG-----DSSVSDEQIEE 105
             I L+ +   +F   +V EN+  G     D       +E 
Sbjct: 81  MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW 121

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 46.8 bits (112), Expect = 9e-07
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 22/113 (19%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHL--- 63
             +   +  +  G+ VA++G SG GK+T   ++A +      +SG I    V +  +   
Sbjct: 17  KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY---KPTSGEIYFDDVLVNDIPPK 73

Query: 64  DGTWLRGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKL 109
                R   +G++ Q   L+   +V ENI +            ++++ E A+ 
Sbjct: 74  Y----RE--VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARK 120

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 46.8 bits (112), Expect = 9e-07
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 22/113 (19%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHL--- 63
           T +   NL I  G+ + ++G SG GK+T   ++A LE   + + G I     D+ +L   
Sbjct: 25  TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE---EPTEGRIYFGDRDVTYLPPK 81

Query: 64  DGTWLRGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKL 109
           D    R   I ++ Q   ++   +V ENI +            D+++  AA+L
Sbjct: 82  D----RN--ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAEL 128

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 20/115 (17%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSSGNITISGVDLKHLDGT 66
           T +++ +L +  G+ + ++G SG GK+T   ++A LE   + S G I I    +   +  
Sbjct: 17  TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE---EPSRGQIYIGDKLVADPEKG 73

Query: 67  WL-----RGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKL 109
                  R   I ++ Q   L+   +V +NI +            D+++ E A+L
Sbjct: 74  IFVPPKDRD--IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAEL 126

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 13/69 (18%)

Query: 1  MAG-NLRRLK------TILKDFNLRIPAGQKVAIVGSSGNGKST---IVALLERFYDVSS 50
          MA   L+ +        + KD NL I  G+ V  VG SG GKST   ++A LE    ++S
Sbjct: 1  MASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TITS 57

Query: 51 GNITISGVD 59
          G++ I    
Sbjct: 58 GDLFIGEKR 66

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 43.3 bits (103), Expect = 9e-06
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 9/112 (8%)

Query: 16  NLRIPAGQK-VAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG 74
           N+    G+    ++G +G GKS  + L+        G + ++G D+  L     RG  IG
Sbjct: 17  NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP-PERRG--IG 73

Query: 75  LINQEPVLFA-TSVRENIRYG----DSSVSDEQIEEAAKLANAHGFISEFPS 121
            + Q+  LF   SV  NI YG    +    D ++ E A+       +   P+
Sbjct: 74  FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA 125

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 13/48 (27%), Positives = 25/48 (52%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS 56
           K  + D N +     ++A++G +G GKST++ +L      +SG +   
Sbjct: 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH 733

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 19/124 (15%)

Query: 23  QKVAIVGSSGN-GKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV 81
            +V I G++G  G+    A L+                 K      L             
Sbjct: 11  GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGA-------- 62

Query: 82  LFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACK 141
                    I YG  +   E +E+  K       +S     ++ ++   LV+A       
Sbjct: 63  --------IIVYGLIN-EQEAMEKILKEHEIDIVVSTVGGESILDQI-ALVKAMKAVGTI 112

Query: 142 GRTV 145
            R +
Sbjct: 113 KRFL 116

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL 63
          L   ++ +  G    I+G +G+GKST++ ++  F     G +     D+ + 
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.97
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.97
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.96
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.96
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.95
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.95
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.95
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.95
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.95
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.95
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.93
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.93
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.93
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.91
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.91
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.9
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.9
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.9
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.89
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.89
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.87
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.87
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.85
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.85
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.84
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.84
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.84
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.83
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.82
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.82
2og2_A	359	Putative signal recognition particle receptor; nuc	99.82
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.81
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.8
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.8
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.78
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.78
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.77
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.76
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.75
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.75
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.75
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.75
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.74
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.74
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.73
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.71
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.71
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.71
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.71
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.7
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.69
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.68
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.66
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.64
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.64
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.64
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.62
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.62
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.6
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.6
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.6
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.59
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.59
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.57
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.56
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.56
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.55
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.53
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.53
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.52
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.52
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.49
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.48
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.48
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.47
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.45
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.44
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.43
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.43
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	99.4
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.39
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.39
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.38
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.37
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.36
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.36
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.34
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.34
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.32
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.31
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.3
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.24
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.22
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.21
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.18
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.18
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.17
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.17
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.15
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	99.07
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.07
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.06
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.05
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.0
3kta_A	182	Chromosome segregation protein SMC; structural mai	99.0
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.98
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.95
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.92
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.92
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.92
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.91
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.9
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.9
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.88
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.85
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	98.84
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.81
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.8
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.78
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.77
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.77
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.75
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.73
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.72
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.71
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.71
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.7
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.7
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.69
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.69
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.68
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.68
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.64
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.62
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.6
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.59
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.57
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.52
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.51
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.51
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.48
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.45
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.44
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.44
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.43
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.42
3kta_B	173	Chromosome segregation protein SMC; structural mai	98.39
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.35
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.29
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.26
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.25
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.25
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	98.24
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.21
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.2
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.19
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.18
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.17
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	98.16
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.15
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.14
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.1
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.1
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.08
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.07
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	98.06
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.05
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.05
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	98.01
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.0
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.98
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.97
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.97
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.95
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.94
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.94
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.92
3ice_A	422	Transcription termination factor RHO; transcriptio	97.92
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.91
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.9
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.88
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.85
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.83
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.83
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.82
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.79
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.76
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.75
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.75
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.75
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.74
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.72
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.72
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.72
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.71
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.7
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.7
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.69
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.68
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.67
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.65
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.64
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.63
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.62
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.62
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.61
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.6
1via_A	175	Shikimate kinase; structural genomics, transferase	97.59
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.58
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.56
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.56
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.53
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.53
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.52
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.51
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.51
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.49
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	97.47
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.47
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.46
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.46
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.44
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.43
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.43
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.42
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.41
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	97.41
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.41
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.4
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.4
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.39
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.39
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.38
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.37
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.37
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.37
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.36
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.36
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.35
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.35
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.35
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.35
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.34
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.34
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.34
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.34
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.34
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.33
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	97.33
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.33
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.33
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.33
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.32
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.32
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.32
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.31
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.31
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.3
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.3
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.29
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	97.29
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.29
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.29
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.29
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.29
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.28
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.28
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.28
3bos_A	242	Putative DNA replication factor; P-loop containing	97.27
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.26
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.26
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.26
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.26
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.25
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.25
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.25
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.24
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.24
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.24
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	97.24
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.24
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.23
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.23
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.23
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.23
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.21
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.21
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.2
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.2
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.19
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.19
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	97.19
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.19
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.18
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.18
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.18
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.16
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.16
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.15
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.13
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.13
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.12
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.12
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.12
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.12
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.12
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.12
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.11
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	97.11
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.11
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	97.1
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.1
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.1
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	97.1
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.09
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	97.09
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	97.09
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.09
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.09
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.09
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.09
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	97.09
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.08
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.07
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.07
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.07
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	97.07
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.07
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.06
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.06
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.06
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.06
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	97.06
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.06
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	97.05
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.05
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	97.05
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	97.05
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	97.04
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.04
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.04
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	97.04
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.04
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	97.03
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.03
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.03
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.03
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.02
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.02
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.02
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.02
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	97.02
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.01
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.01
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.01
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	97.01
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	97.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.99
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.98
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.98
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.98
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.97
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.97
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.97
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.96
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.96
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.96
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.95
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.94
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.94
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.94
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.94
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.93
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.92
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.92
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.92
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.92
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.92
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.92
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.92
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.91
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.91
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.9
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.89
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.88
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.87
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.86
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.85
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.85
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.85
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.82
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.81
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.79
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.78
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.78
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.78
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.77
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.77
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	96.76
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.76
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.75
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.72
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.68
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.67
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.67
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.65
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	96.64
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.63
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.62
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.61
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	96.61
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.59
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.59
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.58
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.58
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.56
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	96.54
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.51
3pvs_A	447	Replication-associated recombination protein A; ma	96.5
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	96.48
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	96.45
2qgz_A	308	Helicase loader, putative primosome component; str	96.45
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.44
1wxq_A	397	GTP-binding protein; structural genomics, riken st	96.44
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.43
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.42
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.42
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.41
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	96.41
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.39
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	96.39
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.37
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.37
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	96.36
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	96.35
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.34
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.33
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.32
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	96.3
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.28
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.27
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	96.26
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	96.26
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.26
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	96.23
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.2
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.19
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.19
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.17

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=2.2e-44  Score=291.35  Aligned_cols=167  Identities=44%  Similarity=0.747  Sum_probs=147.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++...+|++ ||||||++.+|+.||+
T Consensus        67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~-i~~v~Q~~~lf~~Tv~  145 (306)
T 3nh6_A           67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSH-IGVVPQDTVLFNDTIA  145 (306)
T ss_dssp             CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHT-EEEECSSCCCCSEEHH
T ss_pred             CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcc-eEEEecCCccCcccHH
Confidence            469999999999999999999999999999999999999999999999999998887777765 9999999999989999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      |||.++......++++++++.+++.+                                        ++.|+||++||+.+
T Consensus       146 eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~  225 (306)
T 3nh6_A          146 DNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSN  225 (306)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHH
T ss_pred             HHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence            99999865556666666665543321                                        35577999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCch
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~  177 (181)
                      +..+++.|+.+.+++|+|+|||+++.+..||+|++|++|++++ .++++
T Consensus       226 ~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~-~G~~~  273 (306)
T 3nh6_A          226 ERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVE-RGRHE  273 (306)
T ss_dssp             HHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEE-EECHH
T ss_pred             HHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEE-ECCHH
Confidence            9999999988877899999999999998899999999999998 45544

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=5.3e-43  Score=275.88  Aligned_cols=166  Identities=46%  Similarity=0.733  Sum_probs=141.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++ .|+|+||++.+|+.||+
T Consensus        22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~tv~  100 (247)
T 2ff7_A           22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR-QVGVVLQDNVLLNRSII  100 (247)
T ss_dssp             CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH-HEEEECSSCCCTTSBHH
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHh-cEEEEeCCCccccccHH
Confidence            56999999999999999999999999999999999999999999999999998766555554 49999999999888999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      ||+.++......+++.++++.+++.+                                        ++.|+||++||+.+
T Consensus       101 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~  180 (247)
T 2ff7_A          101 DNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES  180 (247)
T ss_dssp             HHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHH
T ss_pred             HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            99998753344555555555444321                                        35577999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++.+++.|+++.+|+|||+||||++.+..||++++|++|++++. +++
T Consensus       181 ~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~-g~~  227 (247)
T 2ff7_A          181 EHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ-GKH  227 (247)
T ss_dssp             HHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEE-ECH
T ss_pred             HHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE-CCH
Confidence            99999999887668999999999998877999999999999873 443

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=2.7e-43  Score=290.26  Aligned_cols=166  Identities=25%  Similarity=0.427  Sum_probs=140.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~~   85 (181)
                      .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..++...   .|+ .||||||++.+|+.
T Consensus        41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~-~Ig~v~Q~~~l~~~  119 (366)
T 3tui_C           41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARR-QIGMIFQHFNLLSS  119 (366)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHT-TEEEECSSCCCCTT
T ss_pred             eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhC-cEEEEeCCCccCCC
Confidence            35899999999999999999999999999999999999999999999999998877543   344 49999999999875


Q ss_pred             -cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         86 -SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        86 -tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                       ||+||+.++..  ...    .+++.++++.+++.+                             ++.|+||++||+.++
T Consensus       120 ~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~  199 (366)
T 3tui_C          120 RTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATT  199 (366)
T ss_dssp             SCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHH
T ss_pred             CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence             99999988521  112    234667777776654                             355779999999999


Q ss_pred             HHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        130 KLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       130 ~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      ..++++|+++.  .|+|||+||||++.+.. ||||++|++|++++ .++.
T Consensus       200 ~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~-~g~~  248 (366)
T 3tui_C          200 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QDTV  248 (366)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-CCBH
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EcCH
Confidence            99999999864  38999999999999966 99999999999998 4543

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=3.6e-43  Score=274.97  Aligned_cols=164  Identities=26%  Similarity=0.429  Sum_probs=136.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhh---ccCcEEEEccCCCCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL---RGNVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~---r~~~i~~v~q~~~l~~~   85 (181)
                      .++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+   +++.+||+||++.+|+.
T Consensus        18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~   97 (235)
T 3tif_A           18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL   97 (235)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT
T ss_pred             eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCC
Confidence            358999999999999999999999999999999999999999999999999987775432   33359999999999986


Q ss_pred             -cHHHHhhcCC-----CCCC----HHHHHHHHHHhcccc------------------------------ccccCCCCCCC
Q psy10472         86 -SVRENIRYGD-----SSVS----DEQIEEAAKLANAHG------------------------------FISEFPSGALD  125 (181)
Q Consensus        86 -tv~enl~~~~-----~~~~----~~~~~~~~~~~~~~~------------------------------~~~~~P~~~LD  125 (181)
                       ||+||+.++.     ....    .+++.++++.+++..                              ++.|+||++||
T Consensus        98 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD  177 (235)
T 3tif_A           98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD  177 (235)
T ss_dssp             SCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred             CcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence             9999998741     1112    233455666665532                              24567999999


Q ss_pred             HHHHHHHHHHHHHhc-C-CcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        126 NESEKLVQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       126 ~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      +.++..++++++++. + |+|||+||||++.+..||++++|++|++++.
T Consensus       178 ~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~  226 (235)
T 3tif_A          178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE  226 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence            999999999998874 3 8999999999997766999999999999874

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=1e-42  Score=277.96  Aligned_cols=166  Identities=26%  Similarity=0.428  Sum_probs=136.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC--ChhhhccCcEEEEccCC--CCcc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL--DGTWLRGNVIGLINQEP--VLFA   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~--~~~~~r~~~i~~v~q~~--~l~~   84 (181)
                      .++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...  +...++++ ||||||++  .+|.
T Consensus        21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~-ig~v~Q~~~~~~~~   99 (275)
T 3gfo_A           21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES-IGIVFQDPDNQLFS   99 (275)
T ss_dssp             CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS-EEEECSSGGGTCCS
T ss_pred             CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc-EEEEEcCccccccc
Confidence            3499999999999999999999999999999999999999999999999998521  12234544 99999997  4566


Q ss_pred             ccHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         85 TSVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        85 ~tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                      .||+||+.|+..  ...    .+++.++++.+++..                             ++.|+||++||+.++
T Consensus       100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~  179 (275)
T 3gfo_A          100 ASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV  179 (275)
T ss_dssp             SBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHH
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence            799999988521  122    234566777766544                             355779999999999


Q ss_pred             HHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        130 KLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       130 ~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      ..++++++++. + |+|||+||||++.+.. ||+|++|++|++++. +++
T Consensus       180 ~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~-g~~  228 (275)
T 3gfo_A          180 SEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ-GNP  228 (275)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEE-ECH
T ss_pred             HHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-CCH
Confidence            99999998864 3 8999999999999965 999999999999984 443

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=2.6e-42  Score=284.09  Aligned_cols=167  Identities=27%  Similarity=0.449  Sum_probs=137.4

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC--hhhhccCcEEEEccCCCCccc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD--GTWLRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~--~~~~r~~~i~~v~q~~~l~~~   85 (181)
                      ..++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+  ....+ +.||||||++.+|+.
T Consensus        16 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~-r~ig~vfQ~~~l~p~   94 (359)
T 3fvq_A           16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE-RRLGYLVQEGVLFPH   94 (359)
T ss_dssp             TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGG-SCCEEECTTCCCCTT
T ss_pred             CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhh-CCEEEEeCCCcCCCC
Confidence            356999999999999999999999999999999999999999999999999983221  11223 349999999999985


Q ss_pred             -cHHHHhhcCCCC---CC---HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         86 -SVRENIRYGDSS---VS---DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        86 -tv~enl~~~~~~---~~---~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                       ||+||+.|+...   ..   .++++++++.+++.+                             ++.|+|+++||+..+
T Consensus        95 ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r  174 (359)
T 3fvq_A           95 LTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLR  174 (359)
T ss_dssp             SCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred             CCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence             999999997432   11   345677777777654                             355679999999999


Q ss_pred             HHHHHHHHHh-c-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        130 KLVQAALESA-C-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       130 ~~i~~~l~~~-~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      ..+++.+.++ + .|+|+|+||||++++.. ||||++|++|++++. +++
T Consensus       175 ~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~-g~~  223 (359)
T 3fvq_A          175 RQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQT-ASP  223 (359)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEE-eCH
Confidence            9999877654 3 48999999999999865 999999999999874 443

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.9e-42  Score=271.57  Aligned_cols=164  Identities=23%  Similarity=0.345  Sum_probs=137.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+....+++.++|+||++.+|+. ||
T Consensus        19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv   98 (240)
T 1ji0_A           19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTV   98 (240)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBH
T ss_pred             eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcH
Confidence            46999999999999999999999999999999999999999999999999987766544433459999999999876 99


Q ss_pred             HHHhhcCC-CC--CC--HHHHHHHHHHhc-ccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGD-SS--VS--DEQIEEAAKLAN-AHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~-~~--~~--~~~~~~~~~~~~-~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +||+.++. ..  ..  .+.++++++.++ +..                             ++.|+||++||+.+++.+
T Consensus        99 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l  178 (240)
T 1ji0_A           99 YENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV  178 (240)
T ss_dssp             HHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHH
T ss_pred             HHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence            99998863 11  11  234556666663 432                             355779999999999999


Q ss_pred             HHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        133 QAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       133 ~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +++|+++. +|+|+|+||||++.+.. ||++++|++|++++.
T Consensus       179 ~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~  220 (240)
T 1ji0_A          179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE  220 (240)
T ss_dssp             HHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence            99998865 68999999999988755 999999999999873

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=1.3e-42  Score=287.67  Aligned_cols=166  Identities=27%  Similarity=0.448  Sum_probs=140.5

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +...+|++|||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...++..   +.||||||++.+|+. 
T Consensus        14 g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~---r~ig~VfQ~~~l~p~l   90 (381)
T 3rlf_A           14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE---RGVGMVFQSYALYPHL   90 (381)
T ss_dssp             TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGG---SCEEEECTTCCCCTTS
T ss_pred             CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHH---CCEEEEecCCcCCCCC
Confidence            3456999999999999999999999999999999999999999999999999998766542   349999999999986 


Q ss_pred             cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHH
Q psy10472         86 SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEK  130 (181)
Q Consensus        86 tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~  130 (181)
                      ||+||+.|+..  ...    .+++.++++.+++..                             ++.|+|+++||+..+.
T Consensus        91 tV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~  170 (381)
T 3rlf_A           91 SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV  170 (381)
T ss_dssp             CHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHH
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHH
Confidence            99999998631  122    245667777776654                             3557799999999999


Q ss_pred             HHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        131 LVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       131 ~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      .+++.|+++. + |+|+|+||||++++.. ||||++|++|++++. +++
T Consensus       171 ~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~-g~~  218 (381)
T 3rlf_A          171 QMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV-GKP  218 (381)
T ss_dssp             HHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred             HHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE-eCH
Confidence            9999998864 4 9999999999999865 999999999999884 443

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=3.4e-42  Score=270.61  Aligned_cols=167  Identities=41%  Similarity=0.663  Sum_probs=141.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++ .++|+||++.+|+.||+
T Consensus        15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~-~i~~v~q~~~l~~~tv~   93 (243)
T 1mv5_A           15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS-QIGFVSQDSAIMAGTIR   93 (243)
T ss_dssp             SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTT-TCCEECCSSCCCCEEHH
T ss_pred             CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHh-hEEEEcCCCccccccHH
Confidence            56999999999999999999999999999999999999999999999999987665444554 49999999999888999


Q ss_pred             HHhhcC-CCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472         89 ENIRYG-DSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE  127 (181)
Q Consensus        89 enl~~~-~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~  127 (181)
                      ||+.++ ......+++.++++.+++.+                                        ++.|+||++||+.
T Consensus        94 enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~  173 (243)
T 1mv5_A           94 ENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSE  173 (243)
T ss_dssp             HHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSS
T ss_pred             HHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence            999987 33344556667776655432                                        2446699999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCch
Q psy10472        128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~  177 (181)
                      +++.+++.++++.+|+|+|+||||++.+..||++++|++|++++ .++++
T Consensus       174 ~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~-~g~~~  222 (243)
T 1mv5_A          174 SESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITG-SGKHN  222 (243)
T ss_dssp             SCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECC-CSCHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEE-eCCHH
Confidence            99999999988667899999999999887799999999999987 44443

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=6.1e-42  Score=272.46  Aligned_cols=167  Identities=25%  Similarity=0.367  Sum_probs=138.3

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-cc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TS   86 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~t   86 (181)
                      .+++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++ .++|+||++.+++ .|
T Consensus        23 ~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~~t  101 (266)
T 4g1u_C           23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR-TRAVMRQYSELAFPFS  101 (266)
T ss_dssp             TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHH-HEEEECSCCCCCSCCB
T ss_pred             CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhh-eEEEEecCCccCCCCC
Confidence            356999999999999999999999999999999999999999999999999998877666554 4999999998754 59


Q ss_pred             HHHHhhcCCCC----CCHHHHHHHHHHhcc-----------------------------------ccccccCCCCCCCHH
Q psy10472         87 VRENIRYGDSS----VSDEQIEEAAKLANA-----------------------------------HGFISEFPSGALDNE  127 (181)
Q Consensus        87 v~enl~~~~~~----~~~~~~~~~~~~~~~-----------------------------------~~~~~~~P~~~LD~~  127 (181)
                      |+||+.++...    ...++++++++.+++                                   .-++.|+||++||+.
T Consensus       102 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~  181 (266)
T 4g1u_C          102 VSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLY  181 (266)
T ss_dssp             HHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHH
T ss_pred             HHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHH
Confidence            99999886321    123345555544332                                   224568899999999


Q ss_pred             HHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        128 SEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       128 ~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++..++++++++. + ++|||+||||++++.. |||+++|++|++++. ++.
T Consensus       182 ~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~-g~~  232 (266)
T 4g1u_C          182 HQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVAC-GTP  232 (266)
T ss_dssp             HHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE-cCH
Confidence            9999999998874 3 5799999999999865 999999999999984 443

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=3.9e-42  Score=272.33  Aligned_cols=163  Identities=22%  Similarity=0.298  Sum_probs=137.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh-hccCcEEEEccCCCCccc-c
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW-LRGNVIGLINQEPVLFAT-S   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~-~r~~~i~~v~q~~~l~~~-t   86 (181)
                      +++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+... .++ .++|+||++.+|+. |
T Consensus        20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~-~i~~v~q~~~l~~~~t   98 (257)
T 1g6h_A           20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY-GIVRTFQTPQPLKEMT   98 (257)
T ss_dssp             EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH-TEEECCCCCGGGGGSB
T ss_pred             EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC-CEEEEccCCccCCCCc
Confidence            46999999999999999999999999999999999999999999999999987655432 343 49999999988875 9


Q ss_pred             HHHHhhcCCCC---------------C-C---HHHHHHHHHHhcccc-----------------------------cccc
Q psy10472         87 VRENIRYGDSS---------------V-S---DEQIEEAAKLANAHG-----------------------------FISE  118 (181)
Q Consensus        87 v~enl~~~~~~---------------~-~---~~~~~~~~~~~~~~~-----------------------------~~~~  118 (181)
                      |+||+.++...               . .   .+++.++++.+++..                             ++.|
T Consensus        99 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLD  178 (257)
T 1g6h_A           99 VLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD  178 (257)
T ss_dssp             HHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             HHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            99999885311               1 1   234566777776543                             3557


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        119 FPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       119 ~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +||++||+.+++.++++++++. +|+|||+||||++.+.. ||++++|++|++++.
T Consensus       179 EPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~  234 (257)
T 1g6h_A          179 EPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE  234 (257)
T ss_dssp             STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence            7999999999999999998864 58999999999999865 999999999999873

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=2.1e-41  Score=268.56  Aligned_cols=165  Identities=41%  Similarity=0.671  Sum_probs=138.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+++||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|+++...+...++++ |+|+||++.+|+.||+
T Consensus        33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~-i~~v~Q~~~l~~~tv~  110 (260)
T 2ghi_A           33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI-IGIVPQDTILFNETIK  110 (260)
T ss_dssp             SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT-EEEECSSCCCCSEEHH
T ss_pred             CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc-EEEEcCCCcccccCHH
Confidence            3699999999999999999999999999999999999987 8999999999876665555554 9999999999988999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      ||+.++......+++.++++.+++.+                                        ++.|+||++||+.+
T Consensus       111 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~  190 (260)
T 2ghi_A          111 YNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT  190 (260)
T ss_dssp             HHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHH
T ss_pred             HHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence            99998743334455555555443211                                        34567999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCc
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~  176 (181)
                      ++.+++.|+++.+++|+|+||||++.+..||++++|++|++++. +++
T Consensus       191 ~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~-g~~  237 (260)
T 2ghi_A          191 EYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEK-GTH  237 (260)
T ss_dssp             HHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEE-ECH
T ss_pred             HHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE-CCH
Confidence            99999999887678999999999998877999999999999873 443

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=1.3e-41  Score=271.19  Aligned_cols=163  Identities=32%  Similarity=0.513  Sum_probs=134.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|++|||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+...+++ .|+||||++.+|+.||+
T Consensus        32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~-~i~~v~Q~~~l~~~tv~  110 (271)
T 2ixe_A           32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT-QVAAVGQEPLLFGRSFR  110 (271)
T ss_dssp             SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH-HEEEECSSCCCCSSBHH
T ss_pred             ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc-cEEEEecCCccccccHH
Confidence            56999999999999999999999999999999999999999999999999987665555554 49999999999888999


Q ss_pred             HHhhcCCCCCCH-HHH---------HHHHHHh--cccc-----------------------------ccccCCCCCCCHH
Q psy10472         89 ENIRYGDSSVSD-EQI---------EEAAKLA--NAHG-----------------------------FISEFPSGALDNE  127 (181)
Q Consensus        89 enl~~~~~~~~~-~~~---------~~~~~~~--~~~~-----------------------------~~~~~P~~~LD~~  127 (181)
                      ||+.++...... +++         .++++.+  ++..                             ++.|+||++||+.
T Consensus       111 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~  190 (271)
T 2ixe_A          111 ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG  190 (271)
T ss_dssp             HHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred             HHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence            999987432221 221         1223333  2211                             3567799999999


Q ss_pred             HHHHHHHHHHHhcC--CcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        128 SEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       128 ~~~~i~~~l~~~~~--~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      +++.++++|+++.+  |+|||+||||++.+..||++++|++|++++.
T Consensus       191 ~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~  237 (271)
T 2ixe_A          191 NQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQ  237 (271)
T ss_dssp             HHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence            99999999998743  8999999999998877999999999999873

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=5.4e-42  Score=266.51  Aligned_cols=164  Identities=23%  Similarity=0.330  Sum_probs=136.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~~   85 (181)
                      +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...   ++++.++|+||++.+|+.
T Consensus        17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~   96 (224)
T 2pcj_A           17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPE   96 (224)
T ss_dssp             EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTT
T ss_pred             EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCC
Confidence            56999999999999999999999999999999999999999999999999987665432   232359999999988875


Q ss_pred             -cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         86 -SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        86 -tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                       ||+||+.++..  ...    .+++.++++.+++..                             ++.|+||++||+.++
T Consensus        97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~  176 (224)
T 2pcj_A           97 LTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANT  176 (224)
T ss_dssp             SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHH
T ss_pred             CCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHH
Confidence             99999987521  111    234566777776543                             355779999999999


Q ss_pred             HHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        130 KLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      +.++++++++. +|+|||+||||++.+..||++++|++|++++.
T Consensus       177 ~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~  220 (224)
T 2pcj_A          177 KRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE  220 (224)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence            99999998864 58999999999998855999999999999873

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=1e-41  Score=270.75  Aligned_cols=163  Identities=26%  Similarity=0.436  Sum_probs=135.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECC--CCChhhhccCcEEEEccCCCCccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK--HLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~--~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.  ......+++ .++||||++.+|+. 
T Consensus        37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~-~i~~v~Q~~~l~~~~  115 (263)
T 2olj_A           37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE-EVGMVFQRFNLFPHM  115 (263)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH-HEEEECSSCCCCTTS
T ss_pred             EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC-cEEEEeCCCcCCCCC
Confidence            46999999999999999999999999999999999999999999999999985  122233444 49999999998876 


Q ss_pred             cHHHHhhcCC---CCCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         86 SVRENIRYGD---SSVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        86 tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                      ||+||+.++.   ....    .+++.++++.+++..                             ++.|+||++||+.++
T Consensus       116 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~  195 (263)
T 2olj_A          116 TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV  195 (263)
T ss_dssp             CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHH
Confidence            9999998742   1112    234566777776643                             355779999999999


Q ss_pred             HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +.++++|+++. +|+|||+||||++.+.. ||++++|++|++++.
T Consensus       196 ~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~  240 (263)
T 2olj_A          196 GEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE  240 (263)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999998864 58999999999999875 999999999999873

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=2.1e-41  Score=279.05  Aligned_cols=164  Identities=23%  Similarity=0.388  Sum_probs=139.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+..  + +.||||||++.+|+. ||
T Consensus        16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~-r~ig~v~Q~~~l~~~ltv   92 (359)
T 2yyz_A           16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--Y-REVGMVFQNYALYPHMTV   92 (359)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--G-TTEEEECSSCCCCTTSCH
T ss_pred             EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--h-CcEEEEecCcccCCCCCH
Confidence            4689999999999999999999999999999999999999999999999999776543  2 349999999999986 99


Q ss_pred             HHHhhcCCCCC--C----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDSSV--S----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~~~--~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +||+.|+....  .    .+++.++++.+++.+                             ++.|+|+++||+..++.+
T Consensus        93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l  172 (359)
T 2yyz_A           93 FENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIM  172 (359)
T ss_dssp             HHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence            99999974321  1    245677888777654                             345679999999999999


Q ss_pred             HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      .+.|+++. + |.|+|+||||++++.. ||++++|++|++++. +++
T Consensus       173 ~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~-g~~  218 (359)
T 2yyz_A          173 RAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQY-GTP  218 (359)
T ss_dssp             HHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred             HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe-CCH
Confidence            99998864 3 8999999999999865 999999999999873 443

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=4.6e-41  Score=278.17  Aligned_cols=164  Identities=23%  Similarity=0.365  Sum_probs=133.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+..  ++ .||||||++.+|+. ||
T Consensus        24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r-~ig~v~Q~~~l~~~ltv  100 (372)
T 1v43_A           24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DR-NISMVFQSYAVWPHMTV  100 (372)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GG-TEEEEEC------CCCH
T ss_pred             EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hC-cEEEEecCcccCCCCCH
Confidence            4689999999999999999999999999999999999999999999999999776543  23 49999999999975 99


Q ss_pred             HHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +||+.|+...  ..    .+++.++++.+++.+                             ++.|+|+++||+..++.+
T Consensus       101 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l  180 (372)
T 1v43_A          101 YENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM  180 (372)
T ss_dssp             HHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence            9999997432  22    234667788777654                             245679999999999999


Q ss_pred             HHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        133 QAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       133 ~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      .+.|+++. + |.|+|+||||++++.. ||++++|++|++++. +++
T Consensus       181 ~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~  226 (372)
T 1v43_A          181 RAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI-GSP  226 (372)
T ss_dssp             HHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred             HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCH
Confidence            99998864 3 8999999999999865 999999999999873 443

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=2.3e-41  Score=278.36  Aligned_cols=162  Identities=23%  Similarity=0.439  Sum_probs=137.7

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-S   86 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t   86 (181)
                      .+++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+..  ++ .||||||++.+|+. |
T Consensus        27 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r-~ig~v~Q~~~l~~~lt  103 (355)
T 1z47_A           27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ--KR-NVGLVFQNYALFQHMT  103 (355)
T ss_dssp             STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GS-SEEEECGGGCCCTTSC
T ss_pred             CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChh--hC-cEEEEecCcccCCCCC
Confidence            35699999999999999999999999999999999999999999999999998765432  33 49999999999985 9


Q ss_pred             HHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472         87 VRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL  131 (181)
Q Consensus        87 v~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~  131 (181)
                      |+||+.|+..  ...    .+++.++++.+++.+                             ++.|+|+++||+..++.
T Consensus       104 v~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~  183 (355)
T 1z47_A          104 VYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRE  183 (355)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            9999998631  112    245667777777654                             34567999999999999


Q ss_pred             HHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        132 VQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       132 i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +++.|+++. + |.|+|+||||++++.. ||++++|++|++++.
T Consensus       184 l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~  227 (355)
T 1z47_A          184 LRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQF  227 (355)
T ss_dssp             HHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            999998864 3 8999999999999865 999999999999873

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.5e-41  Score=268.85  Aligned_cols=162  Identities=27%  Similarity=0.440  Sum_probs=136.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. ....+++ .+||+||++.+|+. ||
T Consensus        28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~-~i~~v~q~~~l~~~ltv  105 (256)
T 1vpl_A           28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK-LISYLPEEAGAYRNMQG  105 (256)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHT-TEEEECTTCCCCTTSBH
T ss_pred             EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhh-cEEEEcCCCCCCCCCcH
Confidence            569999999999999999999999999999999999999999999999999865 3344454 49999999988876 99


Q ss_pred             HHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         88 RENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        88 ~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +||+.++..  ...    .+++.++++.+++..                             ++.|+||++||+.+++.+
T Consensus       106 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l  185 (256)
T 1vpl_A          106 IEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV  185 (256)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHH
Confidence            999987421  112    234566777776543                             355779999999999999


Q ss_pred             HHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        133 QAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       133 ~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +++|+++. +|+|||++|||++.+.. ||++++|++|++++.
T Consensus       186 ~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~  227 (256)
T 1vpl_A          186 RKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET  227 (256)
T ss_dssp             HHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEe
Confidence            99998864 58999999999999876 999999999999873

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=4.2e-41  Score=292.90  Aligned_cols=168  Identities=50%  Similarity=0.771  Sum_probs=148.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++ +|||||++.+|+.||+
T Consensus       354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~-i~~v~Q~~~l~~~tv~  432 (578)
T 4a82_A          354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ-IGLVQQDNILFSDTVK  432 (578)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT-EEEECSSCCCCSSBHH
T ss_pred             CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh-eEEEeCCCccCcccHH
Confidence            469999999999999999999999999999999999999999999999999998887777766 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      ||+.++.+...++++.++++.+++.+                                        ++.|+||++||+.+
T Consensus       433 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~  512 (578)
T 4a82_A          433 ENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES  512 (578)
T ss_dssp             HHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHH
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence            99999865556666777766554321                                        35577999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      ++.+.+.+++..+++|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus       513 ~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~-~g~~~e  561 (578)
T 4a82_A          513 ESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE-TGTHRE  561 (578)
T ss_dssp             HHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEE-EECHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE-ECCHHH
Confidence            9999999988877899999999999998899999999999998 455543

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=2.6e-41  Score=278.23  Aligned_cols=166  Identities=25%  Similarity=0.391  Sum_probs=137.9

Q ss_pred             cc--ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC---hhhhccCcEEEEccCCCCc
Q psy10472          9 KT--ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD---GTWLRGNVIGLINQEPVLF   83 (181)
Q Consensus         9 ~~--vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~---~~~~r~~~i~~v~q~~~l~   83 (181)
                      ++  +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+   ....++ .+|||||++.+|
T Consensus        16 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r-~ig~v~Q~~~l~   94 (353)
T 1oxx_K           16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR-KIGMVFQTWALY   94 (353)
T ss_dssp             GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS-CEEEEETTSCCC
T ss_pred             EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC-CEEEEeCCCccC
Confidence            45  999999999999999999999999999999999999999999999999885411   112233 499999999999


Q ss_pred             cc-cHHHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHH
Q psy10472         84 AT-SVRENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNE  127 (181)
Q Consensus        84 ~~-tv~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~  127 (181)
                      +. ||+||+.|+...  ..    .+++.++++.+++.+                             ++.|+|+++||+.
T Consensus        95 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~  174 (353)
T 1oxx_K           95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR  174 (353)
T ss_dssp             TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGG
T ss_pred             CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence            86 999999987432  12    235667787777654                             3456799999999


Q ss_pred             HHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        128 SEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       128 ~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      .++.+++.|+++. + |+|+|+||||++++.. ||++++|++|++++. +++
T Consensus       175 ~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~-g~~  225 (353)
T 1oxx_K          175 MRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV-GKP  225 (353)
T ss_dssp             GHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCH
Confidence            9999999998864 3 8999999999999865 999999999999873 443

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=3e-41  Score=278.37  Aligned_cols=165  Identities=28%  Similarity=0.439  Sum_probs=139.1

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-S   86 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t   86 (181)
                      .+++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+..  + +.||||||++.+|+. |
T Consensus        15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~-r~ig~v~Q~~~l~~~lt   91 (362)
T 2it1_A           15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--D-RNVGLVFQNWALYPHMT   91 (362)
T ss_dssp             SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--G-TTEEEECTTCCCCTTSC
T ss_pred             CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--H-CcEEEEecCcccCCCCC
Confidence            35699999999999999999999999999999999999999999999999999776543  2 349999999999985 9


Q ss_pred             HHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHH
Q psy10472         87 VRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKL  131 (181)
Q Consensus        87 v~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~  131 (181)
                      |+||+.|+..  ...    .++++++++.+++.+                             ++.|+|+++||+..+..
T Consensus        92 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~  171 (362)
T 2it1_A           92 VYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE  171 (362)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence            9999998621  112    235667788777654                             34567999999999999


Q ss_pred             HHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        132 VQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       132 i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      +.+.|+++. + |.|+|+||||++++.. ||++++|++|++++. +++
T Consensus       172 l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~  218 (362)
T 2it1_A          172 VRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQV-GTP  218 (362)
T ss_dssp             HHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred             HHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-cCH
Confidence            999998864 3 8999999999999865 999999999999873 443

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=5.4e-41  Score=292.64  Aligned_cols=168  Identities=32%  Similarity=0.582  Sum_probs=147.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++ ++||||++.+|+.|++
T Consensus       356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~tv~  434 (587)
T 3qf4_A          356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH-ISAVPQETVLFSGTIK  434 (587)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH-EEEECSSCCCCSEEHH
T ss_pred             CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh-eEEECCCCcCcCccHH
Confidence            569999999999999999999999999999999999999999999999999988887777765 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      ||+.++.....++++.++++.+++.+                                        ++.|+||++||+.+
T Consensus       435 eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~  514 (587)
T 3qf4_A          435 ENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPIT  514 (587)
T ss_dssp             HHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHH
T ss_pred             HHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence            99999866566666666665543321                                        35577999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      ++.+.+.+++..+|+|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus       515 ~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~-~g~~~e  563 (587)
T 3qf4_A          515 EKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAG-FGTHKE  563 (587)
T ss_dssp             HHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEE-EECHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence            9999999988877999999999999988899999999999998 465544

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=1.6e-40  Score=289.37  Aligned_cols=168  Identities=45%  Similarity=0.695  Sum_probs=147.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++ ++||||++.+|+.|++
T Consensus       356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~-i~~v~Q~~~l~~~tv~  434 (582)
T 3b5x_A          356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH-FALVSQNVHLFNDTIA  434 (582)
T ss_pred             ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC-eEEEcCCCccccccHH
Confidence            569999999999999999999999999999999999999999999999999988777777765 9999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472         89 ENIRYGD-SSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE  127 (181)
Q Consensus        89 enl~~~~-~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~  127 (181)
                      ||+.++. ...++++++++++.+++.+                                        ++.|+||++||+.
T Consensus       435 eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~  514 (582)
T 3b5x_A          435 NNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE  514 (582)
T ss_pred             HHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence            9999975 3445666777776655432                                        3456799999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472        128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      +++.+.+.++++.+|+|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus       515 ~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~-~g~~~~  564 (582)
T 3b5x_A          515 SERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIE-RGRHAD  564 (582)
T ss_pred             HHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence            99999999998777999999999999988899999999999998 465544

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=1.8e-40  Score=289.17  Aligned_cols=168  Identities=48%  Similarity=0.719  Sum_probs=147.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++ ++||||++.+|+.|++
T Consensus       356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~-i~~v~Q~~~l~~~tv~  434 (582)
T 3b60_A          356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ-VALVSQNVHLFNDTVA  434 (582)
T ss_dssp             CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT-EEEECSSCCCCSSBHH
T ss_pred             CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh-CeEEccCCcCCCCCHH
Confidence            569999999999999999999999999999999999999999999999999988777777765 9999999999999999


Q ss_pred             HHhhcCC-CCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472         89 ENIRYGD-SSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE  127 (181)
Q Consensus        89 enl~~~~-~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~  127 (181)
                      ||+.++. ...++++++++++.+++.+                                        ++.|+||++||+.
T Consensus       435 eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~  514 (582)
T 3b60_A          435 NNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE  514 (582)
T ss_dssp             HHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHH
T ss_pred             HHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHH
Confidence            9999975 3456677777777655432                                        3456799999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472        128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      +++.+.+.++++.+|+|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus       515 ~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~-~g~~~~  564 (582)
T 3b60_A          515 SERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVE-RGTHSE  564 (582)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEE-EECHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE-ecCHHH
Confidence            99999999988767999999999999987899999999999998 455543

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=2.8e-40  Score=260.57  Aligned_cols=160  Identities=21%  Similarity=0.288  Sum_probs=136.3

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVR   88 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~   88 (181)
                      ++|+++||+|++||+++|+||||||||||||+|+|+++|+ |+|.++|+++...+...+++ .++|+||++.+|+. ||+
T Consensus        14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~~tv~   91 (249)
T 2qi9_C           14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLAL-HRAYLSQQQTPPFATPVW   91 (249)
T ss_dssp             TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHH-HEEEECSCCCCCTTCBHH
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhc-eEEEECCCCccCCCCcHH
Confidence            6899999999999999999999999999999999999999 99999999987666555554 49999999988875 999


Q ss_pred             HHhhcCCCC-CCHHHHHHHHHHhccc------------------------------------cccccCCCCCCCHHHHHH
Q psy10472         89 ENIRYGDSS-VSDEQIEEAAKLANAH------------------------------------GFISEFPSGALDNESEKL  131 (181)
Q Consensus        89 enl~~~~~~-~~~~~~~~~~~~~~~~------------------------------------~~~~~~P~~~LD~~~~~~  131 (181)
                      ||+.++... ...++++++++.+++.                                    -++.|+||++||+.+++.
T Consensus        92 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~  171 (249)
T 2qi9_C           92 HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSA  171 (249)
T ss_dssp             HHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHH
T ss_pred             HHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHH
Confidence            999986321 1355566676655432                                    234678999999999999


Q ss_pred             HHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        132 VQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       132 i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      +.++++++. +|+|||++|||++.+.. ||++++|++|++++
T Consensus       172 l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  213 (249)
T 2qi9_C          172 LDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA  213 (249)
T ss_dssp             HHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            999998874 58999999999999855 99999999999987

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=7.4e-41  Score=274.87  Aligned_cols=159  Identities=25%  Similarity=0.426  Sum_probs=136.8

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHH
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRE   89 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~e   89 (181)
                      +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+..  ++ .||||||++.+|+. ||+|
T Consensus        15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r-~ig~v~Q~~~l~~~ltv~e   91 (348)
T 3d31_A           15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KH-DIAFVYQNYSLFPHMNVKK   91 (348)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HH-TCEEECTTCCCCTTSCHHH
T ss_pred             EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchh--hC-cEEEEecCcccCCCCCHHH
Confidence            89999999999999999999999999999999999999999999999998765433  33 39999999999986 9999


Q ss_pred             HhhcCCC---CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHH
Q psy10472         90 NIRYGDS---SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALE  137 (181)
Q Consensus        90 nl~~~~~---~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~  137 (181)
                      |+.|+..   ....+++.++++.+++.+                             ++.|+|+++||+..++.+.+.|+
T Consensus        92 nl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~  171 (348)
T 3d31_A           92 NLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS  171 (348)
T ss_dssp             HHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence            9998621   112366778888877654                             34567999999999999999998


Q ss_pred             Hhc--CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        138 SAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       138 ~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      ++.  .|+|+|+||||++++.. ||++++|++|++++.
T Consensus       172 ~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~  209 (348)
T 3d31_A          172 VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV  209 (348)
T ss_dssp             HHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEE
T ss_pred             HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            864  38999999999998865 999999999999873

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=5.9e-41  Score=277.73  Aligned_cols=164  Identities=23%  Similarity=0.390  Sum_probs=137.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC------CChhhhccCcEEEEccCCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH------LDGTWLRGNVIGLINQEPVL   82 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~------~~~~~~r~~~i~~v~q~~~l   82 (181)
                      +++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..      .+..  + +.||||||++.+
T Consensus        16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~--~-r~ig~v~Q~~~l   92 (372)
T 1g29_1           16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK--D-RDIAMVFQSYAL   92 (372)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG--G-SSEEEECSCCCC
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh--H-CCEEEEeCCCcc
Confidence            569999999999999999999999999999999999999999999999998865      3332  3 349999999999


Q ss_pred             ccc-cHHHHhhcCCC--CCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCH
Q psy10472         83 FAT-SVRENIRYGDS--SVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDN  126 (181)
Q Consensus        83 ~~~-tv~enl~~~~~--~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~  126 (181)
                      |+. ||+||+.|+..  ...    .+++.++++.+++.+                             ++.|+|+++||+
T Consensus        93 ~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~  172 (372)
T 1g29_1           93 YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA  172 (372)
T ss_dssp             CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCH
T ss_pred             CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence            975 99999998631  112    234667777777654                             355779999999


Q ss_pred             HHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        127 ESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       127 ~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      ..++.+.+.|+++. + |.|+|+||||++++.. ||++++|++|++++. +++
T Consensus       173 ~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~  224 (372)
T 1g29_1          173 KLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV-GSP  224 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECH
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEe-CCH
Confidence            99999999998864 3 8999999999999865 999999999999873 443

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=7.4e-41  Score=292.36  Aligned_cols=168  Identities=46%  Similarity=0.823  Sum_probs=145.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++ ++||||++.+|+.||+
T Consensus       368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~tv~  446 (598)
T 3qf4_B          368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSS-IGIVLQDTILFSTTVK  446 (598)
T ss_dssp             SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHH-EEEECTTCCCCSSBHH
T ss_pred             CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhc-eEEEeCCCccccccHH
Confidence            469999999999999999999999999999999999999999999999999998887777765 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhccc----------------------------------------cccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAH----------------------------------------GFISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~P~~~LD~~~  128 (181)
                      ||+.++....++++++++++.+++.                                        -++.|+||++||+.+
T Consensus       447 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~  526 (598)
T 3qf4_B          447 ENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT  526 (598)
T ss_dssp             HHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHH
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence            9999985444444555554433221                                        145678999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      ++.+.+.+++..+|+|+|+|||+++.+..||+|++|++|++++ .+++++
T Consensus       527 ~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~-~g~~~~  575 (598)
T 3qf4_B          527 EKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVE-MGKHDE  575 (598)
T ss_dssp             HHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEE-CSCHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE-ECCHHH
Confidence            9999999988777999999999999998899999999999998 566554

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=8.8e-41  Score=312.40  Aligned_cols=170  Identities=51%  Similarity=0.755  Sum_probs=154.6

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV   87 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv   87 (181)
                      ..+||+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+++...+|++ |+||||+|.+|++|+
T Consensus      1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~-i~~V~Qdp~LF~gTI 1169 (1321)
T 4f4c_A         1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ-IAIVSQEPTLFDCSI 1169 (1321)
T ss_dssp             SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT-EEEECSSCCCCSEEH
T ss_pred             CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh-eEEECCCCEeeCccH
Confidence            3579999999999999999999999999999999999999999999999999999999999976 999999999999999


Q ss_pred             HHHhhcCC--CCCCHHHHHHHHHHhccccc----------------------------------------cccCCCCCCC
Q psy10472         88 RENIRYGD--SSVSDEQIEEAAKLANAHGF----------------------------------------ISEFPSGALD  125 (181)
Q Consensus        88 ~enl~~~~--~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~P~~~LD  125 (181)
                      +|||.|+.  ...++++++++++.+++.++                                        +.|+||++||
T Consensus      1170 reNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD 1249 (1321)
T 4f4c_A         1170 AENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD 1249 (1321)
T ss_dssp             HHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTT
T ss_pred             HHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCC
Confidence            99999984  34578889999988776543                                        4466999999


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        126 NESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       126 ~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      +++++.+.+.|++..+++|+|+|+|+++.+..||+|++|++|+|+| .|+++++
T Consensus      1250 ~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE-~Gth~eL 1302 (1321)
T 4f4c_A         1250 TESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIE-KGTHTQL 1302 (1321)
T ss_dssp             SHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEE-EECHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence            9999999999998888999999999999999999999999999999 5766654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=1.8e-40  Score=263.54  Aligned_cols=163  Identities=25%  Similarity=0.382  Sum_probs=134.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC----------CCh---hhhccCcEEE
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH----------LDG---TWLRGNVIGL   75 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~----------~~~---~~~r~~~i~~   75 (181)
                      +++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..          .+.   ..+++ .+||
T Consensus        19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~   97 (262)
T 1b0u_A           19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT-RLTM   97 (262)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHH-HEEE
T ss_pred             EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhc-ceEE
Confidence            469999999999999999999999999999999999999999999999999851          332   12343 4999


Q ss_pred             EccCCCCccc-cHHHHhhcCC---CCCC----HHHHHHHHHHhccccc------------------------------cc
Q psy10472         76 INQEPVLFAT-SVRENIRYGD---SSVS----DEQIEEAAKLANAHGF------------------------------IS  117 (181)
Q Consensus        76 v~q~~~l~~~-tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~~------------------------------~~  117 (181)
                      |||++.+|+. ||+||+.++.   ....    .+++.++++.+++..+                              +.
T Consensus        98 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL  177 (262)
T 1b0u_A           98 VFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLF  177 (262)
T ss_dssp             ECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             EecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9999988876 9999998742   1112    2345667777665432                              44


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        118 EFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       118 ~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      |+||++||+.+++.++++++++. +|+|||+||||++.+.. ||++++|++|++++.
T Consensus       178 DEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~  234 (262)
T 1b0u_A          178 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE  234 (262)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             eCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            66999999999999999998864 58999999999999865 999999999999873

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=2.1e-40  Score=263.58  Aligned_cols=159  Identities=28%  Similarity=0.434  Sum_probs=135.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC--CCcccc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP--VLFATS   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~--~l~~~t   86 (181)
                      +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...   .+++ .+||+||++  .+++.|
T Consensus        20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~-~i~~v~q~~~~~~~~~t   95 (266)
T 2yz2_A           20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR-NIGIAFQYPEDQFFAER   95 (266)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG-GEEEECSSGGGGCCCSS
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh-hEEEEeccchhhcCCCc
Confidence            4689999999999999999999999999999999999999999999999987532   3444 499999996  344569


Q ss_pred             HHHHhhcCCCC-----CCHHHHHHHHHHhccc--cc-----------------------------cccCCCCCCCHHHHH
Q psy10472         87 VRENIRYGDSS-----VSDEQIEEAAKLANAH--GF-----------------------------ISEFPSGALDNESEK  130 (181)
Q Consensus        87 v~enl~~~~~~-----~~~~~~~~~~~~~~~~--~~-----------------------------~~~~P~~~LD~~~~~  130 (181)
                      |+||+.++...     ...+++.++++.+++.  .+                             +.|+||++||+.+++
T Consensus        96 v~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~  175 (266)
T 2yz2_A           96 VFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKT  175 (266)
T ss_dssp             HHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHH
Confidence            99999886321     2245677888888876  42                             456799999999999


Q ss_pred             HHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        131 LVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       131 ~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      .++++|+++. +|+|||+||||++.+.. ||++++|++|++++
T Consensus       176 ~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~  218 (266)
T 2yz2_A          176 DLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVF  218 (266)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            9999998864 58999999999999876 99999999999987

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=3.3e-40  Score=258.91  Aligned_cols=158  Identities=25%  Similarity=0.406  Sum_probs=133.6

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHH
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRE   89 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~e   89 (181)
                      +|+++||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++...+  ..++ .+||+||++.+|+. ||+|
T Consensus        14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~-~i~~v~q~~~l~~~ltv~e   89 (240)
T 2onk_A           14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERR-GIGFVPQDYALFPHLSVYR   89 (240)
T ss_dssp             EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTS-CCBCCCSSCCCCTTSCHHH
T ss_pred             EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhC-cEEEEcCCCccCCCCcHHH
Confidence            59999999999 999999999999999999999999999999999999986533  2233 49999999998876 9999


Q ss_pred             HhhcCCCCCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472         90 NIRYGDSSVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAAL  136 (181)
Q Consensus        90 nl~~~~~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l  136 (181)
                      |+.++.....    .++++++++.+++.+                             ++.|+||++||+.+++.+++++
T Consensus        90 nl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l  169 (240)
T 2onk_A           90 NIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL  169 (240)
T ss_dssp             HHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            9998743221    244566777766543                             3557799999999999999999


Q ss_pred             HHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        137 ESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       137 ~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      +++. + |+|||++|||++.+.. ||++++|++|++++.
T Consensus       170 ~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~  208 (240)
T 2onk_A          170 RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK  208 (240)
T ss_dssp             HHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            8864 3 8999999999998865 999999999999873

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=6.2e-41  Score=268.27  Aligned_cols=163  Identities=23%  Similarity=0.376  Sum_probs=134.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECC--CCChhhhccCcEEEEccCCCC-cc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK--HLDGTWLRGNVIGLINQEPVL-FA-   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~--~~~~~~~r~~~i~~v~q~~~l-~~-   84 (181)
                      +++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.  ..+...++++ |+|+||++.+ +. 
T Consensus        34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~-i~~v~Q~~~~~~~~  112 (279)
T 2ihy_A           34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH-IGFVSHSLLEKFQE  112 (279)
T ss_dssp             EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT-EEEECHHHHTTSCT
T ss_pred             EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc-EEEEEcCcccccCC
Confidence            46999999999999999999999999999999999999999999999999886  5555555554 9999999854 43 


Q ss_pred             -ccHHHHhhcCCCC-------CC---HHHHHHHHHHhcccc-----------------------------ccccCCCCCC
Q psy10472         85 -TSVRENIRYGDSS-------VS---DEQIEEAAKLANAHG-----------------------------FISEFPSGAL  124 (181)
Q Consensus        85 -~tv~enl~~~~~~-------~~---~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~L  124 (181)
                       .||+||+.++...       ..   .+++.++++.+++..                             ++.|+||++|
T Consensus       113 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~L  192 (279)
T 2ihy_A          113 GERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGL  192 (279)
T ss_dssp             TSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTC
T ss_pred             CCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccc
Confidence             3999999986311       12   234566777766543                             3557799999


Q ss_pred             CHHHHHHHHHHHHHhc-CCcEE--EEEecCchhhhc-CCeEEEEeCCeEEee
Q psy10472        125 DNESEKLVQAALESAC-KGRTV--LMIAHRLSTVQN-ADLIVVLQAGQIVEM  172 (181)
Q Consensus       125 D~~~~~~i~~~l~~~~-~~~ti--i~vtHd~~~~~~-~d~v~~l~~G~i~~~  172 (181)
                      |+.+++.++++|+++. +|+||  |+||||++.+.. ||++++|++|++++.
T Consensus       193 D~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~  244 (279)
T 2ihy_A          193 DFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQ  244 (279)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999998864 48999  999999999855 999999999999873

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-40  Score=275.14  Aligned_cols=166  Identities=24%  Similarity=0.431  Sum_probs=142.4

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV   87 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv   87 (181)
                      .+++|++|||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++...+...+++. +|||||++.+|+.||
T Consensus        33 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~-ig~v~Q~~~lf~~tv  110 (390)
T 3gd7_A           33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA-FGVIPQKVFIFSGTF  110 (390)
T ss_dssp             SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT-EEEESCCCCCCSEEH
T ss_pred             CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC-EEEEcCCcccCccCH
Confidence            3569999999999999999999999999999999999998 89999999999988887666665 999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472         88 RENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE  127 (181)
Q Consensus        88 ~enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~  127 (181)
                      +||+.+.. ....+++.++++.+++..                                        ++.|+|+++||+.
T Consensus       111 ~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~  189 (390)
T 3gd7_A          111 RKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV  189 (390)
T ss_dssp             HHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHH
T ss_pred             HHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence            99998643 234566677776655432                                        3456799999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCch
Q psy10472        128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~  177 (181)
                      .+..+.+.|++..+++|+|+||||++.+..||||++|++|++++ .++++
T Consensus       190 ~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~-~g~~~  238 (390)
T 3gd7_A          190 TYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQ-YDSIL  238 (390)
T ss_dssp             HHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEE-ESSHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEE-ECCHH
Confidence            99999999988767899999999998777799999999999988 45443

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=8.3e-40  Score=305.83  Aligned_cols=171  Identities=50%  Similarity=0.790  Sum_probs=155.9

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcccc
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATS   86 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~t   86 (181)
                      +.+++|+|+||+|++|+.++|+||||||||||+++|.|+++|++|+|.++|+++.+++...+|++ ||||+|+|++|++|
T Consensus       429 ~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~-i~~v~Q~~~Lf~~T  507 (1321)
T 4f4c_A          429 PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN-VAVVSQEPALFNCT  507 (1321)
T ss_dssp             TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH-EEEECSSCCCCSEE
T ss_pred             CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc-ccccCCcceeeCCc
Confidence            34679999999999999999999999999999999999999999999999999999999888875 99999999999999


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHhccccc----------------------------------------cccCCCCCCCH
Q psy10472         87 VRENIRYGDSSVSDEQIEEAAKLANAHGF----------------------------------------ISEFPSGALDN  126 (181)
Q Consensus        87 v~enl~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~P~~~LD~  126 (181)
                      |+|||.|+.+..+++++.++++.+++.++                                        +.|+||++||+
T Consensus       508 I~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~  587 (1321)
T 4f4c_A          508 IEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDA  587 (1321)
T ss_dssp             HHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCT
T ss_pred             hhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCH
Confidence            99999999877788889999888765442                                        44669999999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        127 ESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       127 ~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      +++..+.+.+..+.+|+|+|+|||+++.+..||+|++|++|+|++ .|+++++
T Consensus       588 ~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive-~Gth~eL  639 (1321)
T 4f4c_A          588 ESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVE-VGDHRAL  639 (1321)
T ss_dssp             TTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEE-EECHHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeec-cCCHHHH
Confidence            999999999998888999999999999999999999999999999 5766554

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=6.1e-40  Score=258.80  Aligned_cols=164  Identities=25%  Similarity=0.337  Sum_probs=135.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC--CCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--YDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl--~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +++|+++||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+....++..++|+||++.+|+. 
T Consensus        16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   95 (250)
T 2d2e_A           16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGV   95 (250)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSC
T ss_pred             EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCC
Confidence            5699999999999999999999999999999999999  8999999999999987766544433458999999998875 


Q ss_pred             cHHHHhhcCC----C-CCC----HHHHHHHHHHhcc-cc------------------------------ccccCCCCCCC
Q psy10472         86 SVRENIRYGD----S-SVS----DEQIEEAAKLANA-HG------------------------------FISEFPSGALD  125 (181)
Q Consensus        86 tv~enl~~~~----~-~~~----~~~~~~~~~~~~~-~~------------------------------~~~~~P~~~LD  125 (181)
                      |++||+.++.    . ...    .+++.++++.+++ ..                              ++.|+||++||
T Consensus        96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD  175 (250)
T 2d2e_A           96 TIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD  175 (250)
T ss_dssp             BHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTC
T ss_pred             CHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence            9999997642    1 111    2345667776666 22                              24466999999


Q ss_pred             HHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc--CCeEEEEeCCeEEee
Q psy10472        126 NESEKLVQAALESAC-KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEM  172 (181)
Q Consensus       126 ~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~--~d~v~~l~~G~i~~~  172 (181)
                      +.+++.++++|+++. +|+|||+||||++.+..  ||++++|++|++++.
T Consensus       176 ~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~  225 (250)
T 2d2e_A          176 IDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVAT  225 (250)
T ss_dssp             HHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEE
Confidence            999999999998875 58999999999999865  599999999999873

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=1.8e-39  Score=258.43  Aligned_cols=164  Identities=27%  Similarity=0.372  Sum_probs=134.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC--CCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--YDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl--~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +++|+++||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|+++...+....++..++|+||++.+|+. 
T Consensus        33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~  112 (267)
T 2zu0_C           33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGV  112 (267)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTC
T ss_pred             EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccc
Confidence            5699999999999999999999999999999999999  5799999999999987665444323349999999998876 


Q ss_pred             cHHHHhhcCC---------CCCC----HHHHHHHHHHhccc-c------------------------------ccccCCC
Q psy10472         86 SVRENIRYGD---------SSVS----DEQIEEAAKLANAH-G------------------------------FISEFPS  121 (181)
Q Consensus        86 tv~enl~~~~---------~~~~----~~~~~~~~~~~~~~-~------------------------------~~~~~P~  121 (181)
                      |+.+|+.+..         ....    .++++++++.+++. .                              ++.|+||
T Consensus       113 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPt  192 (267)
T 2zu0_C          113 SNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD  192 (267)
T ss_dssp             BHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             cHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence            9999986531         1111    23456677776653 1                              2446699


Q ss_pred             CCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc--CCeEEEEeCCeEEee
Q psy10472        122 GALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEM  172 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~--~d~v~~l~~G~i~~~  172 (181)
                      ++||+.+++.++++|+++. +|+|||+||||++.+..  ||++++|++|++++.
T Consensus       193 s~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~  246 (267)
T 2zu0_C          193 SGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS  246 (267)
T ss_dssp             TTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence            9999999999999999875 48999999999998864  899999999999874

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=1.4e-38  Score=248.01  Aligned_cols=149  Identities=26%  Similarity=0.419  Sum_probs=123.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|             + ++|+||++.+|+.||+
T Consensus        21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~-i~~v~q~~~~~~~tv~   86 (229)
T 2pze_A           21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R-ISFCSQFSWIMPGTIK   86 (229)
T ss_dssp             CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C-EEEECSSCCCCSBCHH
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E-EEEEecCCcccCCCHH
Confidence            5699999999999999999999999999999999999999999999988             2 8999999999888999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcc----------------------------------------ccccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANA----------------------------------------HGFISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~P~~~LD~~~  128 (181)
                      ||+.++... ......++++.+++                                        .-++.|+||++||+.+
T Consensus        87 enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~  165 (229)
T 2pze_A           87 ENIIFGVSY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT  165 (229)
T ss_dssp             HHHHTTSCC-CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHH
T ss_pred             HHhhccCCc-ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHH
Confidence            999987422 22222222222111                                        1135577999999999


Q ss_pred             HHHHHHHH-HHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        129 EKLVQAAL-ESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       129 ~~~i~~~l-~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      ++.+++.+ ....+++|+|++|||++.+..||++++|++|++++.
T Consensus       166 ~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~  210 (229)
T 2pze_A          166 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFY  210 (229)
T ss_dssp             HHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEE
Confidence            99999974 455558999999999998867999999999999873

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.4e-38  Score=252.58  Aligned_cols=155  Identities=17%  Similarity=0.274  Sum_probs=133.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEE-EEccCCCCccccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG-LINQEPVLFATSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~-~v~q~~~l~~~tv   87 (181)
                      +++|+++||+|+ ||+++|+||||||||||||+|+|++ |++|+|.++|+++...  .. ++ .++ |+||++.+ ..|+
T Consensus        18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~-~i~~~v~Q~~~l-~~tv   90 (263)
T 2pjz_A           18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YI-RYSTNLPEAYEI-GVTV   90 (263)
T ss_dssp             EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CT-TEEECCGGGSCT-TSBH
T ss_pred             ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hh-heEEEeCCCCcc-CCcH
Confidence            569999999999 9999999999999999999999999 9999999999988643  22 33 499 99999988 7799


Q ss_pred             HHHhhcCCC--CCCHHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472         88 RENIRYGDS--SVSDEQIEEAAKLANAH-G-----------------------------FISEFPSGALDNESEKLVQAA  135 (181)
Q Consensus        88 ~enl~~~~~--~~~~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~~~~~~i~~~  135 (181)
                      +||+.++..  ....++++++++.+++. .                             ++.|+||++||+.+++.+++.
T Consensus        91 ~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~  170 (263)
T 2pjz_A           91 NDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRY  170 (263)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred             HHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHH
Confidence            999987521  23456677888888776 4                             245679999999999999999


Q ss_pred             HHHhcCCcEEEEEecCchhhhc-CC-eEEEEeCCeEEee
Q psy10472        136 LESACKGRTVLMIAHRLSTVQN-AD-LIVVLQAGQIVEM  172 (181)
Q Consensus       136 l~~~~~~~tii~vtHd~~~~~~-~d-~v~~l~~G~i~~~  172 (181)
                      |+++.+  |+|++|||++.+.. || ++++|++|++++.
T Consensus       171 L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~  207 (263)
T 2pjz_A          171 IKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGP  207 (263)
T ss_dssp             HHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEE
T ss_pred             HHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEe
Confidence            988765  99999999999865 99 9999999999873

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=2.5e-38  Score=247.81  Aligned_cols=149  Identities=26%  Similarity=0.433  Sum_probs=122.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|             + ++|+||++.++..||+
T Consensus        18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~-i~~v~Q~~~~~~~tv~   83 (237)
T 2cbz_A           18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------S-VAYVPQQAWIQNDSLR   83 (237)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------C-EEEECSSCCCCSEEHH
T ss_pred             CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------E-EEEEcCCCcCCCcCHH
Confidence            5699999999999999999999999999999999999999999999998             2 8999999987777999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcc----------------------------------------ccccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANA----------------------------------------HGFISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~P~~~LD~~~  128 (181)
                      ||+.++.... .+..+++++.+++                                        .-++.|+||++||+.+
T Consensus        84 enl~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~  162 (237)
T 2cbz_A           84 ENILFGCQLE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV  162 (237)
T ss_dssp             HHHHTTSCCC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHH
T ss_pred             HHhhCccccC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence            9999874321 1122222221111                                        0135577999999999


Q ss_pred             HHHHHHHHH---HhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        129 EKLVQAALE---SACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       129 ~~~i~~~l~---~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      +..+++.+.   .+.+|+|+|+||||++.+..||++++|++|++++.
T Consensus       163 ~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~  209 (237)
T 2cbz_A          163 GKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEM  209 (237)
T ss_dssp             HHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEe
Confidence            999999984   34458999999999998877999999999999873

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=2.5e-38  Score=249.96  Aligned_cols=149  Identities=23%  Similarity=0.289  Sum_probs=125.8

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-cc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TS   86 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~t   86 (181)
                      .+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+             ++ .++|+||++.+++ .|
T Consensus        17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------------~~-~i~~v~q~~~~~~~~t   82 (253)
T 2nq2_C           17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQ-SIGFVPQFFSSPFAYS   82 (253)
T ss_dssp             TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-------------CS-CEEEECSCCCCSSCCB
T ss_pred             CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-------------ec-cEEEEcCCCccCCCCC
Confidence            356999999999999999999999999999999999999999999981             22 4999999998885 59


Q ss_pred             HHHHhhcCCC-------CCC---HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHH
Q psy10472         87 VRENIRYGDS-------SVS---DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNE  127 (181)
Q Consensus        87 v~enl~~~~~-------~~~---~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~  127 (181)
                      |+||+.++..       ...   .++++++++.+++.+                             ++.|+||++||+.
T Consensus        83 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~  162 (253)
T 2nq2_C           83 VLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA  162 (253)
T ss_dssp             HHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHH
T ss_pred             HHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence            9999988631       012   234667777776644                             3557799999999


Q ss_pred             HHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        128 SEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       128 ~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      +++.+++.++++. + |+|||++|||++.+.. ||++++|++|+ ++
T Consensus       163 ~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~  208 (253)
T 2nq2_C          163 NQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FK  208 (253)
T ss_dssp             HHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EE
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Ee
Confidence            9999999998864 4 8999999999999855 99999999999 76

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=4.4e-38  Score=293.63  Aligned_cols=167  Identities=51%  Similarity=0.784  Sum_probs=147.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++...+|++ ||||||+|.+|++||+
T Consensus       403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~-i~~v~Q~~~l~~~ti~  481 (1284)
T 3g5u_A          403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI-IGVVSQEPVLFATTIA  481 (1284)
T ss_dssp             CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH-EEEECSSCCCCSSCHH
T ss_pred             CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh-eEEEcCCCccCCccHH
Confidence            469999999999999999999999999999999999999999999999999999888888765 9999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~~  128 (181)
                      ||+.++......++++++++.+++.+                                        ++.|+||++||+++
T Consensus       482 eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~  561 (1284)
T 3g5u_A          482 ENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES  561 (1284)
T ss_dssp             HHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHH
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence            99999865566666766665543221                                        35577999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCch
Q psy10472        129 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       129 ~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~  177 (181)
                      ++.+.+.++...+|+|+|+|||+++.+..||+|++|++|++++ .++++
T Consensus       562 ~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~-~g~~~  609 (1284)
T 3g5u_A          562 EAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVE-QGNHD  609 (1284)
T ss_dssp             HHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCC-EECHH
T ss_pred             HHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE-ECCHH
Confidence            9999999988777999999999999998899999999999988 45544

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=2.4e-37  Score=288.62  Aligned_cols=168  Identities=52%  Similarity=0.827  Sum_probs=146.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++ ++||||++.+|++||+
T Consensus      1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~l~~~ti~ 1124 (1284)
T 3g5u_A         1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ-LGIVSQEPILFDCSIA 1124 (1284)
T ss_dssp             CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS-CEEEESSCCCCSSBHH
T ss_pred             CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc-eEEECCCCccccccHH
Confidence            369999999999999999999999999999999999999999999999999998888777765 9999999999999999


Q ss_pred             HHhhcCCC--CCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCH
Q psy10472         89 ENIRYGDS--SVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDN  126 (181)
Q Consensus        89 enl~~~~~--~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~  126 (181)
                      ||+.++..  ....+++.++++.+++.+                                        ++.|+||++||+
T Consensus      1125 eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~ 1204 (1284)
T 3g5u_A         1125 ENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204 (1284)
T ss_dssp             HHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCH
T ss_pred             HHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence            99999753  245666666665543221                                        355779999999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchh
Q psy10472        127 ESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       127 ~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      .+++.+.+.+++..+|+|+|+||||++.+..||||++|++|++++ .+++++
T Consensus      1205 ~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~-~g~~~~ 1255 (1284)
T 3g5u_A         1205 ESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE-HGTHQQ 1255 (1284)
T ss_dssp             HHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEE-EECHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEE-ECCHHH
Confidence            999999999988777999999999999997899999999999998 455543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=6.5e-38  Score=241.92  Aligned_cols=153  Identities=18%  Similarity=0.308  Sum_probs=127.0

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVR   88 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~   88 (181)
                      ++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.     ..++ .++|+||++.+|+. ||+
T Consensus        23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~-~i~~v~q~~~~~~~~tv~   96 (214)
T 1sgw_A           23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKG-KIFFLPEEIIVPRKISVE   96 (214)
T ss_dssp             EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGG-GEEEECSSCCCCTTSBHH
T ss_pred             eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcC-cEEEEeCCCcCCCCCCHH
Confidence            6999999999999999999999999999999999999999999999999875     2343 49999999998876 999


Q ss_pred             HHhhcCC---C-CCCHHHHHHHHHHhcccc----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472         89 ENIRYGD---S-SVSDEQIEEAAKLANAHG----------------------------FISEFPSGALDNESEKLVQAAL  136 (181)
Q Consensus        89 enl~~~~---~-~~~~~~~~~~~~~~~~~~----------------------------~~~~~P~~~LD~~~~~~i~~~l  136 (181)
                      ||+.++.   . ....+++.++++.+++..                            ++.|+||++||+.+++.+++.+
T Consensus        97 enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l  176 (214)
T 1sgw_A           97 DYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI  176 (214)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHH
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence            9998742   1 223566778888877643                            2446699999999999999999


Q ss_pred             HHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeE
Q psy10472        137 ESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI  169 (181)
Q Consensus       137 ~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i  169 (181)
                      +++. +|+|||++|||++.+.. ||+++++ .|+|
T Consensus       177 ~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~  210 (214)
T 1sgw_A          177 LEILKEKGIVIISSREELSYCDVNENLHKY-STKI  210 (214)
T ss_dssp             HHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred             HHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence            8865 48999999999999876 8887654 4544

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=1.1e-36  Score=244.89  Aligned_cols=148  Identities=26%  Similarity=0.418  Sum_probs=121.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|              .++|+||++.+|+.||+
T Consensus        51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--------------~i~~v~Q~~~l~~~tv~  116 (290)
T 2bbs_A           51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------RISFCSQNSWIMPGTIK  116 (290)
T ss_dssp             CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--------------CEEEECSSCCCCSSBHH
T ss_pred             ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--------------EEEEEeCCCccCcccHH
Confidence            5699999999999999999999999999999999999999999999987              28999999999888999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhcc----------------------------------------ccccccCCCCCCCHHH
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANA----------------------------------------HGFISEFPSGALDNES  128 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~P~~~LD~~~  128 (181)
                      ||+. +.. .......++++.+++                                        .-++.|+||++||+.+
T Consensus       117 enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~  194 (290)
T 2bbs_A          117 ENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT  194 (290)
T ss_dssp             HHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred             HHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHH
Confidence            9998 432 222222222222111                                        1135677999999999


Q ss_pred             HHHHHHHH-HHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        129 EKLVQAAL-ESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       129 ~~~i~~~l-~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      +..+++.+ +.+.+|+|||+||||++.+..||++++|++|++++.
T Consensus       195 ~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~  239 (290)
T 2bbs_A          195 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFY  239 (290)
T ss_dssp             HHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEe
Confidence            99999974 444568999999999998877999999999999873

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.97  E-value=1e-30  Score=228.23  Aligned_cols=147  Identities=22%  Similarity=0.235  Sum_probs=118.5

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc-cccHHH
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF-ATSVRE   89 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~-~~tv~e   89 (181)
                      .|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+.             . .++|+||++.++ ..||.+
T Consensus       371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~-~i~~v~Q~~~~~~~~tv~e  436 (607)
T 3bk7_A          371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------L-TVAYKPQYIKAEYEGTVYE  436 (607)
T ss_dssp             EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------C-CEEEECSSCCCCCSSBHHH
T ss_pred             EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------e-EEEEEecCccCCCCCcHHH
Confidence            5777788899999999999999999999999999999999999751             1 399999998765 459999


Q ss_pred             HhhcC-CC-CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHHH
Q psy10472         90 NIRYG-DS-SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALES  138 (181)
Q Consensus        90 nl~~~-~~-~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~~  138 (181)
                      ++.+. .. ....+.+.++++.+++..                             ++.|+||++||+.++..++++|++
T Consensus       437 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~  516 (607)
T 3bk7_A          437 LLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH  516 (607)
T ss_dssp             HHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            88653 10 012344556666655433                             356779999999999999999988


Q ss_pred             hc--CCcEEEEEecCchhhhc-CCeEEEEeC--CeEEe
Q psy10472        139 AC--KGRTVLMIAHRLSTVQN-ADLIVVLQA--GQIVE  171 (181)
Q Consensus       139 ~~--~~~tii~vtHd~~~~~~-~d~v~~l~~--G~i~~  171 (181)
                      +.  +|.|+|+||||++++.. |||+++|++  |++..
T Consensus       517 l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~  554 (607)
T 3bk7_A          517 LMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGR  554 (607)
T ss_dssp             HHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEE
T ss_pred             HHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEe
Confidence            63  58999999999999976 999999986  66665

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.97  E-value=8.4e-31  Score=226.26  Aligned_cols=147  Identities=23%  Similarity=0.234  Sum_probs=116.1

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc-cccHHH
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF-ATSVRE   89 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~-~~tv~e   89 (181)
                      .|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+.             . .++|+||++..+ ..||.+
T Consensus       301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~-~i~~v~Q~~~~~~~~tv~~  366 (538)
T 1yqt_A          301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------L-TVAYKPQYIKADYEGTVYE  366 (538)
T ss_dssp             EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------C-CEEEECSSCCCCCSSBHHH
T ss_pred             EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------c-eEEEEecCCcCCCCCcHHH
Confidence            4677778889999999999999999999999999999999999751             1 399999998764 459988


Q ss_pred             HhhcC-CC-CCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHHH
Q psy10472         90 NIRYG-DS-SVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALES  138 (181)
Q Consensus        90 nl~~~-~~-~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~~  138 (181)
                      ++... .. ....+.+.++++.+++..                             ++.|+||++||+.++..++++|++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~  446 (538)
T 1yqt_A          367 LLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH  446 (538)
T ss_dssp             HHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            87643 10 012333444444444322                             456789999999999999999988


Q ss_pred             hc--CCcEEEEEecCchhhhc-CCeEEEEeC--CeEEe
Q psy10472        139 AC--KGRTVLMIAHRLSTVQN-ADLIVVLQA--GQIVE  171 (181)
Q Consensus       139 ~~--~~~tii~vtHd~~~~~~-~d~v~~l~~--G~i~~  171 (181)
                      +.  .|.|||+||||++++.. |||+++|++  |+++.
T Consensus       447 l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~  484 (538)
T 1yqt_A          447 LMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGR  484 (538)
T ss_dssp             HHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEE
T ss_pred             HHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEee
Confidence            64  48999999999999975 999999986  66665

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.96  E-value=3.7e-30  Score=222.08  Aligned_cols=143  Identities=24%  Similarity=0.315  Sum_probs=113.9

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc-cccHHH
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF-ATSVRE   89 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~-~~tv~e   89 (181)
                      .|..+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++             ..++|++|+.... ..||.+
T Consensus       283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-------------~~i~~~~q~~~~~~~~tv~~  349 (538)
T 3ozx_A          283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK-------------QILSYKPQRIFPNYDGTVQQ  349 (538)
T ss_dssp             EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-------------CCEEEECSSCCCCCSSBHHH
T ss_pred             EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------eeeEeechhcccccCCCHHH
Confidence            45666778999999999999999999999999999999999998654             1389999987654 469999


Q ss_pred             HhhcCCCC---CCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHH
Q psy10472         90 NIRYGDSS---VSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALE  137 (181)
Q Consensus        90 nl~~~~~~---~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~  137 (181)
                      |+.+....   .....++++++.+++..                             ++.|+||++||+.++..++++|+
T Consensus       350 ~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~  429 (538)
T 3ozx_A          350 YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIK  429 (538)
T ss_dssp             HHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred             HHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence            98763211   11223344444443322                             46688999999999999999998


Q ss_pred             Hhc--CCcEEEEEecCchhhhc-CCeEEEEeC
Q psy10472        138 SAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA  166 (181)
Q Consensus       138 ~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~  166 (181)
                      ++.  .|+|||+||||++++.. ||||++|++
T Consensus       430 ~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~  461 (538)
T 3ozx_A          430 RVTRERKAVTFIIDHDLSIHDYIADRIIVFKG  461 (538)
T ss_dssp             HHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred             HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence            864  48999999999999976 999999986

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.8e-29  Score=215.66  Aligned_cols=153  Identities=18%  Similarity=0.289  Sum_probs=120.1

Q ss_pred             cccceeeEEecCC-----cEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC-c
Q psy10472         10 TILKDFNLRIPAG-----QKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL-F   83 (181)
Q Consensus        10 ~vl~~isl~i~~G-----e~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l-~   83 (181)
                      .+++++||++.+|     |+++|+||||||||||+++|+|+++|++|+.      +.        ...++|+||+... |
T Consensus       361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~--------~~~i~~~~q~~~~~~  426 (608)
T 3j16_B          361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP--------KLNVSMKPQKIAPKF  426 (608)
T ss_dssp             EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC--------SCCEEEECSSCCCCC
T ss_pred             cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc--------CCcEEEecccccccC
Confidence            4788999999998     7899999999999999999999999999962      11        1249999999754 4


Q ss_pred             cccHHHHhhcCC--CCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHH
Q psy10472         84 ATSVRENIRYGD--SSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLV  132 (181)
Q Consensus        84 ~~tv~enl~~~~--~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i  132 (181)
                      +.|+.+++....  .....+...++++.+++.+                             ++.|+||++||+.++..+
T Consensus       427 ~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i  506 (608)
T 3j16_B          427 PGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIIC  506 (608)
T ss_dssp             CSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHH
T ss_pred             CccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHH
Confidence            569999886421  1123344455555554432                             456789999999999999


Q ss_pred             HHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEeC--CeEEeecCCch
Q psy10472        133 QAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA--GQIVEMLGQHE  177 (181)
Q Consensus       133 ~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~~--G~i~~~~~~~~  177 (181)
                      +++|+++.  .|.|||+||||++++.. ||||++|++  |+++. .++++
T Consensus       507 ~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~-~g~p~  555 (608)
T 3j16_B          507 SKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH-ARAPE  555 (608)
T ss_dssp             HHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEE-CCCCE
T ss_pred             HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEe-cCChH
Confidence            99998863  48999999999999976 999999986  78876 45443

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.95  E-value=1e-29  Score=219.50  Aligned_cols=154  Identities=23%  Similarity=0.247  Sum_probs=113.2

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE---------EECCEECCCCChh-hhccCcEEEEccC
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI---------TISGVDLKHLDGT-WLRGNVIGLINQE   79 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i---------~i~g~~i~~~~~~-~~r~~~i~~v~q~   79 (181)
                      .+|+++| +|++||+++|+||||||||||+|+|+|+++|++|++         .++|.++...... ......+++++|.
T Consensus        36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~  114 (538)
T 1yqt_A           36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQY  114 (538)
T ss_dssp             CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSC
T ss_pred             ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhh
Confidence            4899999 999999999999999999999999999999999995         3455433211001 1112248899997


Q ss_pred             CCCcc----ccHHHHhhcCCCCCCHHHHHHHHHHhcc-----------------------------ccccccCCCCCCCH
Q psy10472         80 PVLFA----TSVRENIRYGDSSVSDEQIEEAAKLANA-----------------------------HGFISEFPSGALDN  126 (181)
Q Consensus        80 ~~l~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~P~~~LD~  126 (181)
                      ..+++    .|+.+++.....   .+++.++++.+++                             .-++.|+||++||+
T Consensus       115 ~~~~~~~~~~~v~e~~~~~~~---~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~  191 (538)
T 1yqt_A          115 VDLIPKAVKGKVIELLKKADE---TGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDI  191 (538)
T ss_dssp             GGGSGGGCCSBHHHHHHHHCS---SSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred             hhhcchhhhccHHHHHhhhhH---HHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence            64432    378888743110   1122333333332                             23567889999999


Q ss_pred             HHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCC
Q psy10472        127 ESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAG  167 (181)
Q Consensus       127 ~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G  167 (181)
                      .+++.+.++|+++. +|+|||+||||++++.. ||+|++|++|
T Consensus       192 ~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~  234 (538)
T 1yqt_A          192 RQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE  234 (538)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence            99999999998864 58999999999999866 9999999864

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.95  E-value=6.6e-29  Score=219.36  Aligned_cols=159  Identities=21%  Similarity=0.295  Sum_probs=97.6

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHH---------------------HHHhcCCCCCc-------ceEEECCEEC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIV---------------------ALLERFYDVSS-------GNITISGVDL   60 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl---------------------~~l~gl~~p~~-------G~i~i~g~~i   60 (181)
                      ..+|+||||+|++||+++|+||||||||||+                     +++.|+..|+.       |.|.+++.+.
T Consensus        31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~  110 (670)
T 3ux8_A           31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT  110 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred             ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence            4589999999999999999999999999998                     99999999984       5555666543


Q ss_pred             CCCChhhhccCcEEEEccCCC-------------------Ccc-ccHHHHhhcCCCC----CCH----H------HHHHH
Q psy10472         61 KHLDGTWLRGNVIGLINQEPV-------------------LFA-TSVRENIRYGDSS----VSD----E------QIEEA  106 (181)
Q Consensus        61 ~~~~~~~~r~~~i~~v~q~~~-------------------l~~-~tv~enl~~~~~~----~~~----~------~~~~~  106 (181)
                      ...+     +..+++++|.+.                   .+. .|+.||+.+....    ...    .      +...+
T Consensus       111 ~~~~-----~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (670)
T 3ux8_A          111 SRNP-----RSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGF  185 (670)
T ss_dssp             ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHH
T ss_pred             hccc-----hhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Confidence            2211     122444444332                   223 4899998764210    000    0      00011


Q ss_pred             HHHhc------------------------------cc--cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCch
Q psy10472        107 AKLAN------------------------------AH--GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLS  153 (181)
Q Consensus       107 ~~~~~------------------------------~~--~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~  153 (181)
                      ++.++                              ..  -++.|+||++||+.++..++++|++++ +|.|||+||||++
T Consensus       186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~  265 (670)
T 3ux8_A          186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED  265 (670)
T ss_dssp             HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred             HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            22221                              12  356789999999999999999998864 5899999999999


Q ss_pred             hhhcCCeEEEE------eCCeEEee
Q psy10472        154 TVQNADLIVVL------QAGQIVEM  172 (181)
Q Consensus       154 ~~~~~d~v~~l------~~G~i~~~  172 (181)
                      .+..||++++|      ++|++++.
T Consensus       266 ~~~~~d~ii~l~~g~~~~~G~i~~~  290 (670)
T 3ux8_A          266 TMLAADYLIDIGPGAGIHGGEVVAA  290 (670)
T ss_dssp             HHHHCSEEEEECSSSGGGCCSEEEE
T ss_pred             HHhhCCEEEEecccccccCCEEEEe
Confidence            88779999999      89999873

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.95  E-value=2.8e-29  Score=219.21  Aligned_cols=154  Identities=23%  Similarity=0.255  Sum_probs=115.4

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE---------EECCEECCCCChhh-hccCcEEEEccC
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI---------TISGVDLKHLDGTW-LRGNVIGLINQE   79 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i---------~i~g~~i~~~~~~~-~r~~~i~~v~q~   79 (181)
                      .+|+++| +|++||+++|+||||||||||||+|+|+++|++|++         .++|.++....... .....+++++|.
T Consensus       106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~  184 (607)
T 3bk7_A          106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY  184 (607)
T ss_dssp             CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred             eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence            4899999 999999999999999999999999999999999995         34554432110011 112248899997


Q ss_pred             CCC----ccccHHHHhhcCCCCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCH
Q psy10472         80 PVL----FATSVRENIRYGDSSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDN  126 (181)
Q Consensus        80 ~~l----~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~  126 (181)
                      ...    +..|+.||+.....   .++++++++.+++..                             ++.|+||++||+
T Consensus       185 ~~~~~~~~~~tv~e~l~~~~~---~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~  261 (607)
T 3bk7_A          185 VDLLPKAVKGKVRELLKKVDE---VGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDI  261 (607)
T ss_dssp             GGGGGGTCCSBHHHHHHHTCC---SSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCH
T ss_pred             hhhchhhccccHHHHhhhhHH---HHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence            533    23489999864311   122344554444332                             466889999999


Q ss_pred             HHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCC
Q psy10472        127 ESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAG  167 (181)
Q Consensus       127 ~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G  167 (181)
                      .++..+.++|+++. +|.|||+||||++++.. ||+|++|+++
T Consensus       262 ~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~  304 (607)
T 3bk7_A          262 RQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE  304 (607)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence            99999999998864 58999999999999866 9999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.95  E-value=1.5e-28  Score=222.44  Aligned_cols=149  Identities=21%  Similarity=0.333  Sum_probs=110.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-------
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-------   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-------   81 (181)
                      +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|..            .++|++|++.       
T Consensus       686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~------------~I~yv~Q~~~~~l~~~~  753 (986)
T 2iw3_A          686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENC------------RIAYIKQHAFAHIESHL  753 (986)
T ss_dssp             SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTC------------CEEEECHHHHHHGGGCT
T ss_pred             ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCcc------------ceEeeccchhhhhhccc
Confidence            468999999999999999999999999999999999999999999998620            1333333210       


Q ss_pred             -------------------------------------------------------------------------------C
Q psy10472         82 -------------------------------------------------------------------------------L   82 (181)
Q Consensus        82 -------------------------------------------------------------------------------l   82 (181)
                                                                                                     .
T Consensus       754 ~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~  833 (986)
T 2iw3_A          754 DKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSER  833 (986)
T ss_dssp             TSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCE
T ss_pred             ccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhccccc
Confidence                                                                                           0


Q ss_pred             cc-ccHHHHhhcC------------------------C-CCCCHHHHHHHHHHhcccc----------------------
Q psy10472         83 FA-TSVRENIRYG------------------------D-SSVSDEQIEEAAKLANAHG----------------------  114 (181)
Q Consensus        83 ~~-~tv~enl~~~------------------------~-~~~~~~~~~~~~~~~~~~~----------------------  114 (181)
                      +. .|+.+|+.++                        . .....++++++++.+++..                      
T Consensus       834 ~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLA  913 (986)
T 2iw3_A          834 WVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLA  913 (986)
T ss_dssp             EEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHH
Confidence            11 1333332111                        0 1112344555666555421                      


Q ss_pred             ---------ccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEe
Q psy10472        115 ---------FISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       115 ---------~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~  171 (181)
                               ++.|+||++||+.+...+.+.|+++  +.|||+||||++++.. ||++++|++|+++.
T Consensus       914 rAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~  978 (986)
T 2iw3_A          914 AGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDGRMTP  978 (986)
T ss_dssp             HHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTTBCCC
T ss_pred             HHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence                     3557799999999999999998765  5799999999999865 99999999999876

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.95  E-value=2.4e-27  Score=214.69  Aligned_cols=149  Identities=19%  Similarity=0.282  Sum_probs=117.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC-CCcc-cc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP-VLFA-TS   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~-~l~~-~t   86 (181)
                      +.+|+++||+|++|++++|+||||||||||||+|+|      |+|  +|.+..    .  .. .++|++|++ .+++ .|
T Consensus       448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~----~--~~-~~~~v~q~~~~~~~~lt  512 (986)
T 2iw3_A          448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ----E--EC-RTVYVEHDIDGTHSDTS  512 (986)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT----T--TS-CEEETTCCCCCCCTTSB
T ss_pred             EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc----c--ce-eEEEEcccccccccCCc
Confidence            568999999999999999999999999999999995      543  443321    1  11 278999985 4555 49


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHhccc-c-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472         87 VRENIRYGDSSVSDEQIEEAAKLANAH-G-----------------------------FISEFPSGALDNESEKLVQAAL  136 (181)
Q Consensus        87 v~enl~~~~~~~~~~~~~~~~~~~~~~-~-----------------------------~~~~~P~~~LD~~~~~~i~~~l  136 (181)
                      +.+|+.+..... .+++.++++.+++. .                             ++.|+||++||+.+++.+.++|
T Consensus       513 v~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L  591 (986)
T 2iw3_A          513 VLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL  591 (986)
T ss_dssp             HHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence            999997621112 56677777777762 1                             3567899999999999999999


Q ss_pred             HHhcCCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCC
Q psy10472        137 ESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQ  175 (181)
Q Consensus       137 ~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~  175 (181)
                      +.  .|.|+|+||||++++.. ||++++|++|+++...++
T Consensus       592 ~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~  629 (986)
T 2iw3_A          592 NT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGN  629 (986)
T ss_dssp             HH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESC
T ss_pred             Hh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCC
Confidence            87  58999999999999966 999999999999642343

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.95  E-value=8.5e-28  Score=212.27  Aligned_cols=63  Identities=33%  Similarity=0.510  Sum_probs=55.2

Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEeecCCch
Q psy10472        114 GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMLGQHE  177 (181)
Q Consensus       114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~~~~~~  177 (181)
                      -++.|+||++||+.++..++++++++. +|.|||+||||++.+..||||++|      ++|++++. ++++
T Consensus       567 llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~-g~~~  636 (670)
T 3ux8_A          567 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAV-GTPE  636 (670)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEE-ECHH
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEe-cCHH
Confidence            367899999999999999999998874 589999999999988779999999      89999984 5443

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.93  E-value=3.6e-27  Score=203.46  Aligned_cols=147  Identities=20%  Similarity=0.241  Sum_probs=103.5

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE-----------EECCEECCCCChhhh-ccCcEEEEccC----CCC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI-----------TISGVDLKHLDGTWL-RGNVIGLINQE----PVL   82 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i-----------~i~g~~i~~~~~~~~-r~~~i~~v~q~----~~l   82 (181)
                      +++||+++|+||||||||||+|+|+|+++|++|+|           .++|.++........ ....+...+|.    +.+
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF  101 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence            45899999999999999999999999999999998           566655422111111 11124444444    334


Q ss_pred             ccccHHHHhhcCCCCCCHHHHHHHHHHhc-----------------------------cccccccCCCCCCCHHHHHHHH
Q psy10472         83 FATSVRENIRYGDSSVSDEQIEEAAKLAN-----------------------------AHGFISEFPSGALDNESEKLVQ  133 (181)
Q Consensus        83 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~P~~~LD~~~~~~i~  133 (181)
                      +..++.+++.....   .++++++++.++                             ..-++.|+||++||+.++..+.
T Consensus       102 ~~~~v~~~l~~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~  178 (538)
T 3ozx_A          102 LKGTVNEILTKIDE---RGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA  178 (538)
T ss_dssp             CCSBHHHHHHHHCC---SSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH
T ss_pred             ccCcHHHHhhcchh---HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence            44577776642211   111222333222                             2235678899999999999999


Q ss_pred             HHHHHhcCCcEEEEEecCchhhhc-CCeEEEEeCCe
Q psy10472        134 AALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQ  168 (181)
Q Consensus       134 ~~l~~~~~~~tii~vtHd~~~~~~-~d~v~~l~~G~  168 (181)
                      ++|+++.+|+|||+||||++++.. ||+|++|++|.
T Consensus       179 ~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~  214 (538)
T 3ozx_A          179 KAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES  214 (538)
T ss_dssp             HHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred             HHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence            999988679999999999999876 99999998753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.3e-26  Score=202.21  Aligned_cols=156  Identities=20%  Similarity=0.253  Sum_probs=105.7

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEE-----------ECCEECCCCChhhhccC-cEEEEcc
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNIT-----------ISGVDLKHLDGTWLRGN-VIGLINQ   78 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~-----------i~g~~i~~~~~~~~r~~-~i~~v~q   78 (181)
                      .|++++ ++++||+++|+||||||||||||+|+|+++|++|+|.           +.|.++........... ...+.+|
T Consensus        93 ~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  171 (608)
T 3j16_B           93 KLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQ  171 (608)
T ss_dssp             EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECC
T ss_pred             eecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchh
Confidence            455555 5889999999999999999999999999999999982           33322111100111111 1223344


Q ss_pred             CCCCcc-------ccHHHHhhcCCCCCCHHHHHHHHHHhcccc-----------------------------ccccCCCC
Q psy10472         79 EPVLFA-------TSVRENIRYGDSSVSDEQIEEAAKLANAHG-----------------------------FISEFPSG  122 (181)
Q Consensus        79 ~~~l~~-------~tv~enl~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~  122 (181)
                      ....++       .++.+++.... ....++++++++.+++..                             ++.|+||+
T Consensus       172 ~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts  250 (608)
T 3j16_B          172 YVDNIPRAIKGPVQKVGELLKLRM-EKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSS  250 (608)
T ss_dssp             CTTTHHHHCSSSSSHHHHHHHHHC-CSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTT
T ss_pred             hhhhhhhhhcchhhHHHHHHhhhh-hhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECccc
Confidence            322111       14555544321 123345555665555432                             45678999


Q ss_pred             CCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCe
Q psy10472        123 ALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQ  168 (181)
Q Consensus       123 ~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~  168 (181)
                      +||+.++..+.++++++. +|+|||+||||++++.. ||+|++|++|.
T Consensus       251 ~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~  298 (608)
T 3j16_B          251 YLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP  298 (608)
T ss_dssp             TCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            999999999999999875 48999999999999976 99999998764

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.93  E-value=1.4e-25  Score=187.35  Aligned_cols=161  Identities=17%  Similarity=0.184  Sum_probs=119.1

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC--------------------------------------CCcc
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD--------------------------------------VSSG   51 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~--------------------------------------p~~G   51 (181)
                      .++++++|++++| +++|+|||||||||||++|.++..                                      +..|
T Consensus        49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~  127 (415)
T 4aby_A           49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG  127 (415)
T ss_dssp             TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred             cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence            4789999999999 999999999999999999977764                                      4578


Q ss_pred             eEEECCEECCCCChhhhccCcEEEEccCCCCccccH------HHHhh---------------------------------
Q psy10472         52 NITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV------RENIR---------------------------------   92 (181)
Q Consensus        52 ~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv------~enl~---------------------------------   92 (181)
                      ++++||+++.......+....+++++|+..++..+.      .+++.                                 
T Consensus       128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~  207 (415)
T 4aby_A          128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP  207 (415)
T ss_dssp             EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence            999999998654444555555899999975542111      11111                                 


Q ss_pred             ----------------------------------------------cCC---------------------------CC--
Q psy10472         93 ----------------------------------------------YGD---------------------------SS--   97 (181)
Q Consensus        93 ----------------------------------------------~~~---------------------------~~--   97 (181)
                                                                    +..                           ..  
T Consensus       208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  287 (415)
T 4aby_A          208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE  287 (415)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence                                                          000                           00  


Q ss_pred             --------CC---HHHHHHHHHHh-cc--ccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEE
Q psy10472         98 --------VS---DEQIEEAAKLA-NA--HGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVV  163 (181)
Q Consensus        98 --------~~---~~~~~~~~~~~-~~--~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~  163 (181)
                              .+   .+++.-+...+ ..  .-++.|+|+++||+..+..+.+.|+.+.+|.|||+|||+++.+..||++++
T Consensus       288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~  367 (415)
T 4aby_A          288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK  367 (415)
T ss_dssp             CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred             cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence                    12   12222222222 23  446789999999999999999999988778999999999988877999999


Q ss_pred             E----eCCeEEe
Q psy10472        164 L----QAGQIVE  171 (181)
Q Consensus       164 l----~~G~i~~  171 (181)
                      |    ++|+++.
T Consensus       368 l~k~~~~G~~~~  379 (415)
T 4aby_A          368 VEKQVEDGRTVS  379 (415)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEeccCCceEE
Confidence            9    9999865

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.91  E-value=1.2e-24  Score=196.55  Aligned_cols=64  Identities=33%  Similarity=0.495  Sum_probs=56.2

Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEeecCCchh
Q psy10472        114 GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMLGQHEN  178 (181)
Q Consensus       114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~~~~~~~  178 (181)
                      -++.|+||++||+..++.++++|+++. +|.|||+||||++.+..||+|++|      ++|++++ .+++++
T Consensus       829 LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~-~Gtpee  899 (916)
T 3pih_A          829 LYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVA-TGTPEE  899 (916)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEE-EESHHH
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEE-EcCHHH
Confidence            356789999999999999999998864 599999999999998789999999      8999998 455544

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.91  E-value=5.6e-27  Score=179.26  Aligned_cols=154  Identities=14%  Similarity=0.072  Sum_probs=91.0

Q ss_pred             ccccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc
Q psy10472          5 LRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA   84 (181)
Q Consensus         5 ~~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~   84 (181)
                      ..+..++++|  .+|++||+++|+||||||||||+|+|+|+++.    +.+++......+....+ +.++|+||++.+|+
T Consensus         5 ~~~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~-~~i~~~~q~~~~~~   77 (207)
T 1znw_A            5 GPDTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEV-DGVDYHFIDPTRFQ   77 (207)
T ss_dssp             ----------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCC-BTTTBEECCHHHHH
T ss_pred             CCCCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCccccc-CCCeeEecCHHHHH
Confidence            3445678888  79999999999999999999999999999863    44544222111111123 34899999988776


Q ss_pred             c-cHHHHhhcC----C--C--CCCHHHH----HHH------HHHhcccc-----------c-------cccCCCCCC---
Q psy10472         85 T-SVRENIRYG----D--S--SVSDEQI----EEA------AKLANAHG-----------F-------ISEFPSGAL---  124 (181)
Q Consensus        85 ~-tv~enl~~~----~--~--~~~~~~~----~~~------~~~~~~~~-----------~-------~~~~P~~~L---  124 (181)
                      . |+.+|+.+.    .  .  .......    .+.      ++.+++..           +       +.++|++++   
T Consensus        78 ~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~  157 (207)
T 1znw_A           78 QLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTE  157 (207)
T ss_dssp             HHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCS
T ss_pred             HHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCC
Confidence            4 777776421    0  0  0112222    111      12222211           1       123366676   


Q ss_pred             -CHHHHHHHHHHHHHhc--CCcEEEEEecCchhhhc-CCeEEEEe
Q psy10472        125 -DNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQ  165 (181)
Q Consensus       125 -D~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~~~-~d~v~~l~  165 (181)
                       |+..++.+.++++++.  .|.|+|+||||++++.. ||+|++|.
T Consensus       158 ~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          158 TADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             CHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence             6778889999988764  38999999999999966 99999984

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.90  E-value=2.1e-24  Score=193.59  Aligned_cols=58  Identities=21%  Similarity=0.438  Sum_probs=52.2

Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEee
Q psy10472        115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEM  172 (181)
Q Consensus       115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~  172 (181)
                      ++.|+||++||+..++.++++|+++. +|.|||+||||++++..||+|++|      ++|+++..
T Consensus       755 LILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~~g~~~G~Iv~~  819 (842)
T 2vf7_A          755 YVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQ  819 (842)
T ss_dssp             EEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEE
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCCCCCCCEEEEE
Confidence            56788999999999999999998864 699999999999999669999999      69999873

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.90  E-value=1.5e-24  Score=195.45  Aligned_cols=62  Identities=32%  Similarity=0.499  Sum_probs=53.9

Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEeecCCc
Q psy10472        114 GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMLGQH  176 (181)
Q Consensus       114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~~~~~  176 (181)
                      -++.|+||++||+..++.++++|+++. +|.|||+||||++++..||+|++|      ++|+++.. +++
T Consensus       869 lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~-g~~  937 (972)
T 2r6f_A          869 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAV-GTP  937 (972)
T ss_dssp             EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEE-ESH
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEe-cCH
Confidence            356788999999999999999998864 589999999999998779999999      68999873 443

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.2e-25  Score=190.72  Aligned_cols=146  Identities=15%  Similarity=0.159  Sum_probs=109.1

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc-e-EEECCEECCCCChhhhccCcEEEEccCCCCcc----
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG-N-ITISGVDLKHLDGTWLRGNVIGLINQEPVLFA----   84 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G-~-i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~----   84 (181)
                      .+.++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|.         .++ .++|+||++.+|+    
T Consensus       127 ~y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~-~i~~vpq~~~l~~~~~~  196 (460)
T 2npi_A          127 MLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQ-PIFTVPGCISATPISDI  196 (460)
T ss_dssp             HHHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTS-CSSSCSSCCEEEECCSC
T ss_pred             hhhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccC-Ceeeeccchhhcccccc
Confidence            34578999999999999999999999999999999999999 9 999981         133 4899999985442    


Q ss_pred             ccHHHHhhcCCCC-------C------------C-----------HHHHHHHHH--Hh-----ccccccccC-CCCCCCH
Q psy10472         85 TSVRENIRYGDSS-------V------------S-----------DEQIEEAAK--LA-----NAHGFISEF-PSGALDN  126 (181)
Q Consensus        85 ~tv~enl~~~~~~-------~------------~-----------~~~~~~~~~--~~-----~~~~~~~~~-P~~~LD~  126 (181)
                      .|+++|+ |+...       .            .           .+++.-+..  ++     ...+++.|+ |+++||+
T Consensus       197 ~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~  275 (460)
T 2npi_A          197 LDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDE  275 (460)
T ss_dssp             CCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCS
T ss_pred             cchhhhh-cccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccCh
Confidence            3888888 53210       0            0           111111111  11     112377888 9999999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEecCch------hhhc-CCe-----EEEEe-CCeEE
Q psy10472        127 ESEKLVQAALESACKGRTVLMIAHRLS------TVQN-ADL-----IVVLQ-AGQIV  170 (181)
Q Consensus       127 ~~~~~i~~~l~~~~~~~tii~vtHd~~------~~~~-~d~-----v~~l~-~G~i~  170 (181)
                      . .+.+.++++++  +.|+|+|||+.+      ++.. ||+     |++|+ +|+++
T Consensus       276 ~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv  329 (460)
T 2npi_A          276 N-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS  329 (460)
T ss_dssp             S-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred             h-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence            9 66677766654  688999999988      6644 999     99999 99987

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.89  E-value=2e-25  Score=188.38  Aligned_cols=158  Identities=18%  Similarity=0.156  Sum_probs=117.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCE---ECCCCC-----hhhhccCcEEEEccC-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGV---DLKHLD-----GTWLRGNVIGLINQE-   79 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~---~i~~~~-----~~~~r~~~i~~v~q~-   79 (181)
                      ..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.++|+   ++..+.     ...++ +.++|++|+ 
T Consensus       145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~-r~i~~v~q~~  222 (438)
T 2dpy_A          145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRA-RSVVIAAPAD  222 (438)
T ss_dssp             CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHH-TEEEEEECTT
T ss_pred             ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccC-ceEEEEECCC
Confidence            4589999 999999999999999999999999999999999999999997   443211     12233 459999995 


Q ss_pred             CCCcc-ccHHHHhhcCC-----CCC-------CHHHHHHHHHHhccccccccCC-CCCCCHHHHHHHHHHHHHhcC----
Q psy10472         80 PVLFA-TSVRENIRYGD-----SSV-------SDEQIEEAAKLANAHGFISEFP-SGALDNESEKLVQAALESACK----  141 (181)
Q Consensus        80 ~~l~~-~tv~enl~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~P-~~~LD~~~~~~i~~~l~~~~~----  141 (181)
                      ..+++ .++.+|+.+..     ...       .-.+.....+.+.+.  +.+.| +++||+.....+.+++.++.+    
T Consensus       223 ~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA--l~~p~~t~glD~~~~~~l~~ll~r~~~~~~~  300 (438)
T 2dpy_A          223 VSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA--IGEPPATKGYPPSVFAKLPALVERAGNGIHG  300 (438)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH--TTCCCCSSSCCTTHHHHHHHHHTTCSCCSTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH--hCCCcccccCCHHHHHHHHHHHHHHHhccCC
Confidence            44554 49999886531     000       111222222222222  33444 899999999999999987643    


Q ss_pred             -Cc-----EEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472        142 -GR-----TVLMIAHRLSTVQNADLIVVLQAGQIVE  171 (181)
Q Consensus       142 -~~-----tii~vtHd~~~~~~~d~v~~l~~G~i~~  171 (181)
                       |.     ||+++|||++ ...||++++|.+|+++.
T Consensus       301 ~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl  335 (438)
T 2dpy_A          301 GGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL  335 (438)
T ss_dssp             SCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred             CCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence             64     9999999999 55599999999999987

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.87  E-value=2.1e-24  Score=165.60  Aligned_cols=139  Identities=13%  Similarity=0.144  Sum_probs=85.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC--CC--cc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP--VL--FA   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~--~l--~~   84 (181)
                      +.+|+++    ++||+++|+||||||||||+++|+|+ +|++|+|..  .++.. +....++ .+||+||++  .+  +.
T Consensus        13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~-~~~~~~~-~ig~v~q~~~enl~~~~   83 (208)
T 3b85_A           13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR-PAVEAGE-KLGFLPGTLNEKIDPYL   83 (208)
T ss_dssp             HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE-CSCCTTC-CCCSSCC------CTTT
T ss_pred             HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC-Cchhhhc-ceEEecCCHHHHHHHHH
Confidence            4688885    89999999999999999999999999 999999943  23221 1122343 499999986  22  11


Q ss_pred             ccHHHHhhcCCCCCCHHHHHHHHHHhcc----------------ccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q psy10472         85 TSVRENIRYGDSSVSDEQIEEAAKLANA----------------HGFISEFPSGALDNESEKLVQAALESACKGRTVLMI  148 (181)
Q Consensus        85 ~tv~enl~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~v  148 (181)
                      .++.+++..   ....+.+.++++. ++                .-++.|+||++    ++..++++|+++.+|+||| +
T Consensus        84 ~~~~~~~~~---~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-v  154 (208)
T 3b85_A           84 RPLHDALRD---MVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-V  154 (208)
T ss_dssp             HHHHHHHTT---TSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-E
T ss_pred             HHHHHHHHH---hccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-E
Confidence            122233211   1122344555554 32                12467889999    8888999998775589999 9


Q ss_pred             ecCchhhhcCCeEEEEeCCe
Q psy10472        149 AHRLSTVQNADLIVVLQAGQ  168 (181)
Q Consensus       149 tHd~~~~~~~d~v~~l~~G~  168 (181)
                      |||++.+..   ....++|.
T Consensus       155 tHd~~~~~~---~~~~~~G~  171 (208)
T 3b85_A          155 TGDITQVDL---PGGQKSGL  171 (208)
T ss_dssp             EEC---------------CC
T ss_pred             ECCHHHHhC---cCCCCCcH
Confidence            999987653   33456664

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.87  E-value=8e-24  Score=182.25  Aligned_cols=156  Identities=16%  Similarity=0.169  Sum_probs=108.4

Q ss_pred             cccccceeeE-EecCCcEEEEECCCCCcHHHHHHH--HhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC--
Q psy10472          8 LKTILKDFNL-RIPAGQKVAIVGSSGNGKSTIVAL--LERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL--   82 (181)
Q Consensus         8 ~~~vl~~isl-~i~~Ge~~~liG~nGsGKSTLl~~--l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l--   82 (181)
                      ..++|++++| .|++|++++|+||||||||||+++  ++|+.+|++|.|+++|++.. ......++ .+||+||++..  
T Consensus        24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~-~~~~~~~~-~~g~~~q~~~~~~  101 (525)
T 1tf7_A           24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP-QDIIKNAR-SFGWDLAKLVDEG  101 (525)
T ss_dssp             CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH-HHHHHHHG-GGTCCHHHHHHTT
T ss_pred             CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCH-HHHHHHHH-HcCCChHHhhccC
Confidence            3568999999 999999999999999999999999  78999999999999997621 11122233 48999998642  


Q ss_pred             --ccccHHHHhhcCCCCCC----HHHHH---HHHHHhccccccccCCCC-----CCCHHHHHHHHHHHHHhc-CCcEEEE
Q psy10472         83 --FATSVRENIRYGDSSVS----DEQIE---EAAKLANAHGFISEFPSG-----ALDNESEKLVQAALESAC-KGRTVLM  147 (181)
Q Consensus        83 --~~~tv~enl~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~P~~-----~LD~~~~~~i~~~l~~~~-~~~tii~  147 (181)
                        +..++.+. ........    .+...   ..+..-+..-++.++|++     +||+..++.++++++.++ .|+|+|+
T Consensus       102 ~l~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~  180 (525)
T 1tf7_A          102 KLFILDASPD-PEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVM  180 (525)
T ss_dssp             SEEEEECCCC-SSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             cEEEEecCcc-cchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence              21111110 00000001    11111   122222333455666765     579999999999998875 4999999


Q ss_pred             EecCchhh---------hc-CCeEEEEeC
Q psy10472        148 IAHRLSTV---------QN-ADLIVVLQA  166 (181)
Q Consensus       148 vtHd~~~~---------~~-~d~v~~l~~  166 (181)
                      +||+++.+         .. ||+|++|++
T Consensus       181 itH~~~~~~~~~~~~i~~~laD~vi~L~~  209 (525)
T 1tf7_A          181 TTERIEEYGPIARYGVEEFVSDNVVILRN  209 (525)
T ss_dssp             EEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred             EecCCCCccccccccceeeeeeEEEEEEE
Confidence            99999874         45 999999998

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.85  E-value=3.8e-24  Score=159.11  Aligned_cols=130  Identities=20%  Similarity=0.287  Sum_probs=81.2

Q ss_pred             eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC--CccccHHHHh
Q psy10472         14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV--LFATSVRENI   91 (181)
Q Consensus        14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~--l~~~tv~enl   91 (181)
                      +|||++++||+++|+||||||||||++++.+      |...++        ...+    .++++|++.  .+..++++++
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~--------~d~~----~g~~~~~~~~~~~~~~~~~~~   62 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS--------SDFC----RGLMSDDENDQTVTGAAFDVL   62 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE--------HHHH----HHHHCSSTTCGGGHHHHHHHH
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc--------cHHH----HHHhcCcccchhhHHHHHHHH
Confidence            6899999999999999999999999997542      111111        1111    145666552  2223333332


Q ss_pred             hc--------CC------CCCC---HHHHHHHHHHh--ccccccccCCCCCCCHH----------------HHHHHHHHH
Q psy10472         92 RY--------GD------SSVS---DEQIEEAAKLA--NAHGFISEFPSGALDNE----------------SEKLVQAAL  136 (181)
Q Consensus        92 ~~--------~~------~~~~---~~~~~~~~~~~--~~~~~~~~~P~~~LD~~----------------~~~~i~~~l  136 (181)
                      ..        +.      ....   ..+...+++.+  ...-++.|+|+++||+.                ....+.+.+
T Consensus        63 ~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l  142 (171)
T 4gp7_A           63 HYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSI  142 (171)
T ss_dssp             HHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhh
Confidence            11        10      0111   11112223332  23346789999999999                557788887


Q ss_pred             HHhc-CCcEEEEEecCchhhhcCCeE
Q psy10472        137 ESAC-KGRTVLMIAHRLSTVQNADLI  161 (181)
Q Consensus       137 ~~~~-~~~tii~vtHd~~~~~~~d~v  161 (181)
                      +.+. +|.|+|+||||++++..++++
T Consensus       143 ~~l~~~g~tvi~vtH~~~~~~~~~~~  168 (171)
T 4gp7_A          143 KGLQREGFRYVYILNSPEEVEEVVFE  168 (171)
T ss_dssp             TTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred             hhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence            6653 499999999999998766554

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.85  E-value=2.8e-22  Score=161.80  Aligned_cols=153  Identities=15%  Similarity=0.182  Sum_probs=104.7

Q ss_pred             ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh----hhhc-cCcEEEEccCCC-Cccc-
Q psy10472         13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG----TWLR-GNVIGLINQEPV-LFAT-   85 (181)
Q Consensus        13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~r-~~~i~~v~q~~~-l~~~-   85 (181)
                      .++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.....    ..++ +..++|++|++. +++. 
T Consensus        91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~  170 (302)
T 3b9q_A           91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT  170 (302)
T ss_dssp             CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred             cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence            57899999999999999999999999999999999999999999988754321    1221 224999999998 7765 


Q ss_pred             cHHHHhhcCC--------------CCCCHHHHHHHH------HH--h-ccc--cccccCCCCCCCHHHHHHHHHHHHHhc
Q psy10472         86 SVRENIRYGD--------------SSVSDEQIEEAA------KL--A-NAH--GFISEFPSGALDNESEKLVQAALESAC  140 (181)
Q Consensus        86 tv~enl~~~~--------------~~~~~~~~~~~~------~~--~-~~~--~~~~~~P~~~LD~~~~~~i~~~l~~~~  140 (181)
                      |+++|+.++.              .......+.+.-      ..  . ...  -++.| |+++||+..+.   ..+.+ .
T Consensus       171 ~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~---~~~~~-~  245 (302)
T 3b9q_A          171 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---REFNE-V  245 (302)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH---HHHHH-H
T ss_pred             HHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH---HHHHH-h
Confidence            9999987531              011122222111      10  0 122  34567 99999998542   11211 2


Q ss_pred             CCcEEEEEecC---------chhhhc-CCeEEEEeCCeEE
Q psy10472        141 KGRTVLMIAHR---------LSTVQN-ADLIVVLQAGQIV  170 (181)
Q Consensus       141 ~~~tii~vtHd---------~~~~~~-~d~v~~l~~G~i~  170 (181)
                      .|.|+|++||.         ++.+.. .+.|.++..|+.+
T Consensus       246 ~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~  285 (302)
T 3b9q_A          246 VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV  285 (302)
T ss_dssp             TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred             cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence            38999999993         334434 7899999999654

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.84  E-value=1e-23  Score=170.05  Aligned_cols=130  Identities=18%  Similarity=0.195  Sum_probs=94.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      .++|+++||+|++|++++|+||||||||||+++|+|++   +|+|                   ++|++|++.+|..|++
T Consensus       113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I-------------------~~~v~q~~~lf~~ti~  170 (305)
T 2v9p_A          113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV-------------------LSFANHKSHFWLASLA  170 (305)
T ss_dssp             HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-------------------ECGGGTTSGGGGGGGT
T ss_pred             hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-------------------EEEecCccccccccHH
Confidence            35899999999999999999999999999999999998   7887                   3456788888888888


Q ss_pred             H-HhhcCCCCCCHHHHHHHHHH-h--c-------------cccccccCC---CCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q psy10472         89 E-NIRYGDSSVSDEQIEEAAKL-A--N-------------AHGFISEFP---SGALDNESEKLVQAALESACKGRTVLMI  148 (181)
Q Consensus        89 e-nl~~~~~~~~~~~~~~~~~~-~--~-------------~~~~~~~~P---~~~LD~~~~~~i~~~l~~~~~~~tii~v  148 (181)
                      + |+.++.. ... .+.+.++. +  +             ...++.++|   |++||+.++..+..             +
T Consensus       171 ~~ni~~~~~-~~~-~~~~~i~~~L~~gldg~~LSgGqkQRARAll~~p~iLlTs~LD~~~~~~i~~-------------l  235 (305)
T 2v9p_A          171 DTRAALVDD-ATH-ACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLY-------------L  235 (305)
T ss_dssp             TCSCEEEEE-ECH-HHHHHHHHTTTGGGGTCCEECCCSSCCCCEECCCCEEEEESSCSTTCGGGGG-------------G
T ss_pred             HHhhccCcc-ccH-HHHHHHHHHhHccCCccCcCHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHH-------------H
Confidence            7 8887521 122 23333333 1  1             111222223   89999998887752             2


Q ss_pred             ecCchhhhcCCeEEEEeCCeEEeecCCch
Q psy10472        149 AHRLSTVQNADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       149 tHd~~~~~~~d~v~~l~~G~i~~~~~~~~  177 (181)
                      ||+++.+..||+| +|++|++++ .++++
T Consensus       236 tH~~~~~~~aD~i-vl~~G~iv~-~g~~~  262 (305)
T 2v9p_A          236 HSRVQTFRFEQPC-TDESGEQPF-NITDA  262 (305)
T ss_dssp             TTTEEEEECCCCC-CCC---CCC-CCCHH
T ss_pred             hCCHHHHHhCCEE-EEeCCEEEE-eCCHH
Confidence            9999988789999 999999987 45544

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.84  E-value=6.8e-23  Score=157.51  Aligned_cols=143  Identities=18%  Similarity=0.163  Sum_probs=96.1

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcCCCC-------CcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHH
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDV-------SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVREN   90 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-------~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~en   90 (181)
                      -|++|++++|+||||||||||+++|+|+..|       ..|.+++++.+.  ...     +.+++++|...+++.++.+|
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~~-----~~i~~~~~~~~~~~~~~~~~   93 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FRP-----ERIREIAQNRGLDPDEVLKH   93 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCH-----HHHHHHHHHTTSCHHHHHHT
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CCH-----HHHHHHHHHcCCCHHHHhhc
Confidence            5899999999999999999999999996655       445778877542  111     13678888888887799999


Q ss_pred             hhcCCCCCCHH---HHHHHHHHh--------ccccccccCCCCCCCHH-------H-----HHHHHHHHHHh-c-CCcEE
Q psy10472         91 IRYGDSSVSDE---QIEEAAKLA--------NAHGFISEFPSGALDNE-------S-----EKLVQAALESA-C-KGRTV  145 (181)
Q Consensus        91 l~~~~~~~~~~---~~~~~~~~~--------~~~~~~~~~P~~~LD~~-------~-----~~~i~~~l~~~-~-~~~ti  145 (181)
                      +.+........   ....+.+.+        +..-++.|+|++.+|+.       .     ...++..+..+ + .|+||
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tv  173 (231)
T 4a74_A           94 IYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAV  173 (231)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred             EEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeE
Confidence            98764322111   122222222        23345578899988873       1     12556666554 3 38999


Q ss_pred             EEEecCch----hhhc-CCeEEEEeCC
Q psy10472        146 LMIAHRLS----TVQN-ADLIVVLQAG  167 (181)
Q Consensus       146 i~vtHd~~----~~~~-~d~v~~l~~G  167 (181)
                      |++||..+    .+.. ||+++.|++|
T Consensus       174 i~vtH~~~~~g~~~~~~~d~~l~l~~~  200 (231)
T 4a74_A          174 FVTNQVQANGGHILAHSATLRVYLRKG  200 (231)
T ss_dssp             EEEEECC---------CCSEEEEEEEC
T ss_pred             EEEeecccCcchhhHhhceEEEEEEec
Confidence            99999554    4765 9999999875

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.83  E-value=3e-23  Score=173.63  Aligned_cols=149  Identities=18%  Similarity=0.260  Sum_probs=103.1

Q ss_pred             ccccceeeEEecCCc--------------------EEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhh
Q psy10472          9 KTILKDFNLRIPAGQ--------------------KVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL   68 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge--------------------~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~   68 (181)
                      +.+|++|||+|++|+                    +++|+||||||||||+|+|+|+++|++|+|.++|.++.       
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------  108 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------  108 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence            358999999999999                    99999999999999999999999999999999987542       


Q ss_pred             ccCcEEEEccCCCCccccHHHHhhcCCCCC-------------------------CHHHHH--HHHHHh---------cc
Q psy10472         69 RGNVIGLINQEPVLFATSVRENIRYGDSSV-------------------------SDEQIE--EAAKLA---------NA  112 (181)
Q Consensus        69 r~~~i~~v~q~~~l~~~tv~enl~~~~~~~-------------------------~~~~~~--~~~~~~---------~~  112 (181)
                      +   .++++|++.....|+.||+.++....                         .++++.  .++...         ..
T Consensus       109 ~---~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkp  185 (413)
T 1tq4_A          109 M---ERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKV  185 (413)
T ss_dssp             C---CCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred             e---eEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecC
Confidence            1   26788886432347777665532110                         222221  111111         11


Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHhc------C----CcEEEEEecCchh--hhc-CCeEE-EEeCC
Q psy10472        113 HGFISEFPSGALDNESEKLVQAALESAC------K----GRTVLMIAHRLST--VQN-ADLIV-VLQAG  167 (181)
Q Consensus       113 ~~~~~~~P~~~LD~~~~~~i~~~l~~~~------~----~~tii~vtHd~~~--~~~-~d~v~-~l~~G  167 (181)
                      +-++.|+|+++||+..++.+++.++++.      .    ..+++++||+++.  +.. ||++. .|..|
T Consensus       186 dlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          186 DSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             HHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             cccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence            2245678999999999999988887652      1    3678899999886  654 77664 33444

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.82  E-value=3.7e-20  Score=150.35  Aligned_cols=56  Identities=20%  Similarity=0.299  Sum_probs=48.5

Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeE--EEEeCCeE
Q psy10472        114 GFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLI--VVLQAGQI  169 (181)
Q Consensus       114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v--~~l~~G~i  169 (181)
                      -++.|+|+++||+..++.+.++++.+.++.++|++||+++.+..||++  ++|.+|.-
T Consensus       244 ~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s  301 (322)
T 1e69_A          244 FYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS  301 (322)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence            356788999999999999999998876689999999998766779987  88888864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.82  E-value=5.2e-22  Score=162.96  Aligned_cols=158  Identities=19%  Similarity=0.175  Sum_probs=110.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC-------CChhhhccCcEEEEccCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH-------LDGTWLRGNVIGLINQEPV   81 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~-------~~~~~~r~~~i~~v~q~~~   81 (181)
                      ..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|++...       .....+ .+.+.+++|...
T Consensus        59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~-~~~v~~~~~~~~  136 (347)
T 2obl_A           59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTL-SKCVLVVTTSDR  136 (347)
T ss_dssp             CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHH-TTEEEEEECTTS
T ss_pred             CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhh-hceEEEEECCCC
Confidence            3589999 9999999999999999999999999999999999999998865211       111112 234788887643


Q ss_pred             Cc-c-ccHHHHhh-c----CCCC-------CCHHHHHHHHHHhccccccccCC-CCCCCHHHHHHHHHHHHHhc--C-Cc
Q psy10472         82 LF-A-TSVRENIR-Y----GDSS-------VSDEQIEEAAKLANAHGFISEFP-SGALDNESEKLVQAALESAC--K-GR  143 (181)
Q Consensus        82 l~-~-~tv~enl~-~----~~~~-------~~~~~~~~~~~~~~~~~~~~~~P-~~~LD~~~~~~i~~~l~~~~--~-~~  143 (181)
                      .. . .++..+.. +    ....       ..-.+...+.+.+.+.  +.++| +++||+.....+.+++++..  + |.
T Consensus       137 ~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la--l~~p~~t~Gldp~~~~~l~~ller~~~~~~Gs  214 (347)
T 2obl_A          137 PALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA--SGEPDVRGGFPPSVFSSLPKLLERAGPAPKGS  214 (347)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH--TTCCCCBTTBCHHHHHHHHHHHTTCEECSSSE
T ss_pred             CHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH--cCCCCcccCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            21 1 12222211 0    0000       1122222333333333  45666 69999999999999998864  3 77


Q ss_pred             -----EEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472        144 -----TVLMIAHRLSTVQNADLIVVLQAGQIVE  171 (181)
Q Consensus       144 -----tii~vtHd~~~~~~~d~v~~l~~G~i~~  171 (181)
                           ||+++|||++ ...||++++|.+|+++.
T Consensus       215 iT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl  246 (347)
T 2obl_A          215 ITAIYTVLLESDNVN-DPIGDEVRSILDGHIVL  246 (347)
T ss_dssp             EEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEB
T ss_pred             eeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEE
Confidence                 9999999998 34499999999999986

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.82  E-value=4.2e-21  Score=158.03  Aligned_cols=154  Identities=16%  Similarity=0.198  Sum_probs=106.6

Q ss_pred             ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh----hhh-ccCcEEEEccCCC-Cccc-
Q psy10472         13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG----TWL-RGNVIGLINQEPV-LFAT-   85 (181)
Q Consensus        13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~-r~~~i~~v~q~~~-l~~~-   85 (181)
                      .++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.....    ..+ ++..++|++|++. +++. 
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~  227 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT  227 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence            46889999999999999999999999999999999999999999988754321    122 1224999999988 7765 


Q ss_pred             cHHHHhhcCC--------------CCCCHHHHHHH------HH-Hh--ccc--cccccCCCCCCCHHHHHHHHHHHHHhc
Q psy10472         86 SVRENIRYGD--------------SSVSDEQIEEA------AK-LA--NAH--GFISEFPSGALDNESEKLVQAALESAC  140 (181)
Q Consensus        86 tv~enl~~~~--------------~~~~~~~~~~~------~~-~~--~~~--~~~~~~P~~~LD~~~~~~i~~~l~~~~  140 (181)
                      ++++|+.++.              .......+.+.      +. .+  ...  -++.| |+++||+..+..   .+.+ .
T Consensus       228 tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~---~~~~-~  302 (359)
T 2og2_A          228 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAR---EFNE-V  302 (359)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHH---HHHH-H
T ss_pred             hHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHH---HHHH-h
Confidence            9999987531              11122222111      11 11  122  34567 999999986521   1111 2


Q ss_pred             CCcEEEEEecC---------chhhhc-CCeEEEEeCCeEEe
Q psy10472        141 KGRTVLMIAHR---------LSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       141 ~~~tii~vtHd---------~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      .+.|+|++||.         ++.+.. +..|.++..|+.++
T Consensus       303 ~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~  343 (359)
T 2og2_A          303 VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVE  343 (359)
T ss_dssp             TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGG
T ss_pred             cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChH
Confidence            38999999993         334434 78999999996543

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.81  E-value=2.3e-19  Score=148.16  Aligned_cols=58  Identities=17%  Similarity=0.287  Sum_probs=51.5

Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEeCCeEEe
Q psy10472        114 GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVE  171 (181)
Q Consensus       114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~  171 (181)
                      -++.|+||++||+.++..+++.++.+. +|.|||+||||++.+..||++++|++|++++
T Consensus       306 ~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~~l~~G~i~~  364 (365)
T 3qf7_A          306 AFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKLRITGGVVVN  364 (365)
T ss_dssp             EEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEEEEETTEEC-
T ss_pred             EEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEe
Confidence            356788999999999999999998875 5899999999999876799999999999875

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.80  E-value=2.2e-21  Score=158.35  Aligned_cols=131  Identities=16%  Similarity=0.200  Sum_probs=94.6

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHH
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVREN   90 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~en   90 (181)
                      +++++||.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+....+  ..+ +.++++++            
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~--~~~-~~i~~~~g------------  224 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK--HHK-NYTQLFFG------------  224 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS--SCS-SEEEEECB------------
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc--cch-hEEEEEeC------------
Confidence            688999999999999999999999999999999999999999999996532221  123 34788764            


Q ss_pred             hhcCCCCCCHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCC-cEEEEEecCchhhhcCCeEEEEeCCe
Q psy10472         91 IRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKG-RTVLMIAHRLSTVQNADLIVVLQAGQ  168 (181)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~-~tii~vtHd~~~~~~~d~v~~l~~G~  168 (181)
                         + .......+..++ .....-++.++|++       .++.++++.+..| .|+|++||+.+....|||+++|.+|.
T Consensus       225 ---g-g~~~r~~la~aL-~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~  291 (330)
T 2pt7_A          225 ---G-NITSADCLKSCL-RMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN  291 (330)
T ss_dssp             ---T-TBCHHHHHHHHT-TSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred             ---C-ChhHHHHHHHHh-hhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence               1 001111222222 12344466788987       1345666665554 58999999999656699999998875

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.80  E-value=3e-22  Score=154.38  Aligned_cols=148  Identities=13%  Similarity=0.086  Sum_probs=85.8

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh-hhccCcEEEEccCCCCccc-c-
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT-WLRGNVIGLINQEPVLFAT-S-   86 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~-~~r~~~i~~v~q~~~l~~~-t-   86 (181)
                      ..|++|||+|++|++++|+||||||||||+++|+|++ |  |+|.+ |.++...+.. ..+. .++|+||++.+|+. + 
T Consensus        11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~   85 (218)
T 1z6g_A           11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKE-GVDYYFIDKTIFEDKLK   85 (218)
T ss_dssp             -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCB-TTTBEECCHHHHHHHHH
T ss_pred             ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCccccc-CCeEEECCHHHHHHhhh
Confidence            4799999999999999999999999999999999999 6  99999 8766443221 1233 48999999877753 3 


Q ss_pred             HHHHhhc---CCC--CCCHHHHHHHHHHhc-----------------c------cccc-------ccCCCCCCCHHHHHH
Q psy10472         87 VRENIRY---GDS--SVSDEQIEEAAKLAN-----------------A------HGFI-------SEFPSGALDNESEKL  131 (181)
Q Consensus        87 v~enl~~---~~~--~~~~~~~~~~~~~~~-----------------~------~~~~-------~~~P~~~LD~~~~~~  131 (181)
                      ..+++.+   ...  ......++++++...                 +      ..++       .++|++++|..+...
T Consensus        86 ~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~  165 (218)
T 1z6g_A           86 NEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQ  165 (218)
T ss_dssp             TTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHH
T ss_pred             ccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHH
Confidence            2223321   110  012333444443211                 1      0111       123667888887777


Q ss_pred             HHHHHHHhc--------CCcEEEEEecCchhhhc-CCeEE
Q psy10472        132 VQAALESAC--------KGRTVLMIAHRLSTVQN-ADLIV  162 (181)
Q Consensus       132 i~~~l~~~~--------~~~tii~vtHd~~~~~~-~d~v~  162 (181)
                      +.+.+....        .....|+++||++++.. +++++
T Consensus       166 i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii  205 (218)
T 1z6g_A          166 IQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL  205 (218)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence            777765432        35677888888877643 55544

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.78  E-value=2.1e-20  Score=147.91  Aligned_cols=132  Identities=17%  Similarity=0.160  Sum_probs=92.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-cceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv   87 (181)
                      .++|+++|  +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++....    + ..+++++|...-.. . 
T Consensus        14 ~~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~-~~~~~v~q~~~gl~-~-   84 (261)
T 2eyu_A           14 PDKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----K-HKKSIVNQREVGED-T-   84 (261)
T ss_dssp             CTHHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----C-CSSSEEEEEEBTTT-B-
T ss_pred             HHHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----C-CcceeeeHHHhCCC-H-
Confidence            36899999  9999999999999999999999999999998 999999987654321    1 12455665310000 0 


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEe
Q psy10472         88 RENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ  165 (181)
Q Consensus        88 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~  165 (181)
                              ... ...+..++.. +..-++.++|+   |+++...+.   +....|.+|+++||+.+....|||++.|.
T Consensus        85 --------~~l-~~~la~aL~~-~p~illlDEp~---D~~~~~~~l---~~~~~g~~vl~t~H~~~~~~~~dri~~l~  146 (261)
T 2eyu_A           85 --------KSF-ADALRAALRE-DPDVIFVGEMR---DLETVETAL---RAAETGHLVFGTLHTNTAIDTIHRIVDIF  146 (261)
T ss_dssp             --------SCH-HHHHHHHHHH-CCSEEEESCCC---SHHHHHHHH---HHHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred             --------HHH-HHHHHHHHhh-CCCEEEeCCCC---CHHHHHHHH---HHHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence                    000 2233444443 55557789999   888765443   33345899999999988655588876664

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.78  E-value=1.1e-20  Score=145.85  Aligned_cols=128  Identities=12%  Similarity=0.132  Sum_probs=90.9

Q ss_pred             eeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC--CcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH----
Q psy10472         15 FNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV--SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV----   87 (181)
Q Consensus        15 isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p--~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv----   87 (181)
                      -.-..++|++++|+||||||||||+++|+|+++|  ..|.|.+.+.+...    ..+ ..++|+||++.+|+. ++    
T Consensus         9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~-~gi~y~fq~~~~f~~~~~~~~f   83 (219)
T 1s96_A            9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEV-HGEHYFFVNHDEFKEMISRDAF   83 (219)
T ss_dssp             ------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCC-BTTTBEECCHHHHHHHHHTTCE
T ss_pred             ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccc-cCceEEECCHHHHHHHHhcCHH
Confidence            3456789999999999999999999999999986  68999888754321    122 248999999988875 77    


Q ss_pred             HHHhhcCCCC--CCHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhc
Q psy10472         88 RENIRYGDSS--VSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN  157 (181)
Q Consensus        88 ~enl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~  157 (181)
                      .||+.+....  ...+.++++++. + ..++.+     ||+.++..+.+.+.   ++.||+++||+++.+..
T Consensus        84 ~E~~~~~~~~yg~~~~~v~~~l~~-G-~illLD-----LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~  145 (219)
T 1s96_A           84 LEHAEVFGNYYGTSREAIEQVLAT-G-VDVFLD-----IDWQGAQQIRQKMP---HARSIFILPPSKIELDR  145 (219)
T ss_dssp             EEEEEETTEEEEEEHHHHHHHHTT-T-CEEEEE-----CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHH
T ss_pred             HHHHHHHhccCCCCHHHHHHHHhc-C-CeEEEE-----ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHH
Confidence            6777664221  234445555543 2 223334     99999999998775   58999999999988754

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.77  E-value=1.1e-19  Score=144.46  Aligned_cols=124  Identities=18%  Similarity=0.142  Sum_probs=69.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhhcCCCCC---C
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIRYGDSSV---S   99 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~   99 (181)
                      .++|+||||||||||+|+|+|+..|++|+|.++|+++...   . +.+.++|++|++.+++. ||.||+.|+....   .
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~-~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~   79 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---V-EIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC   79 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---C-SCCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---e-eeeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence            4899999999999999999999999999999999877432   2 22459999999988865 9999999875321   1


Q ss_pred             HHHHHHHHH---------Hh-------------ccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhh
Q psy10472        100 DEQIEEAAK---------LA-------------NAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTV  155 (181)
Q Consensus       100 ~~~~~~~~~---------~~-------------~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~  155 (181)
                      .+.+.+.+.         .+             ...-++.++|+.+||+...+    +++.+.+..++|+|.|..+.+
T Consensus        80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~----~l~~L~~~~~vI~Vi~K~D~l  153 (270)
T 3sop_A           80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLE----FMKHLSKVVNIIPVIAKADTM  153 (270)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHH----HHHHHHTTSEEEEEETTGGGS
T ss_pred             HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHH----HHHHHHhcCcEEEEEeccccC
Confidence            122222211         00             01113467799999998732    333333237888888876643

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.76  E-value=1.1e-19  Score=158.80  Aligned_cols=151  Identities=19%  Similarity=0.257  Sum_probs=95.6

Q ss_pred             EEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-CcceEEECCEECCC--CC-hhhhccCcEEEEccCCCCccc-cHHHHh
Q psy10472         17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-SSGNITISGVDLKH--LD-GTWLRGNVIGLINQEPVLFAT-SVRENI   91 (181)
Q Consensus        17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-~~G~i~i~g~~i~~--~~-~~~~r~~~i~~v~q~~~l~~~-tv~enl   91 (181)
                      ++++.   ++|+|||||||||||++|+|+..| ++|.|.++|.++..  .+ ...+++ .++|+||++.+++. ||.+|+
T Consensus        43 l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~-~i~~v~Q~~~l~~~~tv~e~i  118 (608)
T 3szr_A           43 LALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRG-KVSYQDYEIEISDASEVEKEI  118 (608)
T ss_dssp             CCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEE-EESCC---CCCCCHHHHHTTH
T ss_pred             ccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCcccccee-EEeeecccccCCCHHHHHHHH
Confidence            55554   999999999999999999999988 79999999998521  11 123444 49999999988875 999999


Q ss_pred             hcCC-------CCCCHHHHHHHHHHh-ccccccccCC------CCCCCHHHHHHHHHHHHHh-cC--CcEEEEEecCchh
Q psy10472         92 RYGD-------SSVSDEQIEEAAKLA-NAHGFISEFP------SGALDNESEKLVQAALESA-CK--GRTVLMIAHRLST  154 (181)
Q Consensus        92 ~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~P------~~~LD~~~~~~i~~~l~~~-~~--~~tii~vtHd~~~  154 (181)
                      .++.       .....+.+....... ...-.+.|+|      +++||+..+..+.++++.+ .+  +.+++++||+++.
T Consensus       119 ~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~  198 (608)
T 3szr_A          119 NKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI  198 (608)
T ss_dssp             HHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred             HHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh
Confidence            7631       000000000000000 0112456778      9999999999999999885 33  6789999999764


Q ss_pred             hh--------c-----CCeEEEEeCCeEEe
Q psy10472        155 VQ--------N-----ADLIVVLQAGQIVE  171 (181)
Q Consensus       155 ~~--------~-----~d~v~~l~~G~i~~  171 (181)
                      +.        .     ...|+++.++.++.
T Consensus       199 a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~  228 (608)
T 3szr_A          199 ATTEALSMAQEVDPEGDRTIGILTKPDLVD  228 (608)
T ss_dssp             TTCHHHHHHHHHCSSCCSEEEEEECGGGSS
T ss_pred             ccHHHHHHHHHHhhcCCceEEEecchhhcC
Confidence            31        1     35688888876654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.75  E-value=2.2e-19  Score=134.40  Aligned_cols=131  Identities=16%  Similarity=0.158  Sum_probs=81.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhh----cCC----
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIR----YGD----   95 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~----~~~----   95 (181)
                      +++|+||||||||||+++|+|++.     |.++|.+.........++ .+||++|++.     +.+|+.    +..    
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~-~ig~~~~~~~-----~~~~~~~~~~~~~~~~~   70 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKK-RTGFRIITTE-----GKKKIFSSKFFTSKKLV   70 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC-------CCEEEEEETT-----CCEEEEEETTCCCSSEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccc-eeEEEeecCc-----HHHHHHHhhcCCccccc
Confidence            689999999999999999999985     556665432221112233 4899999862     122221    100    


Q ss_pred             CC----CC--HHHHHHHHH-------HhccccccccC--CCCCCCHHHHHHHHHHHHHhcCCcEEEEEec---Cchhhhc
Q psy10472         96 SS----VS--DEQIEEAAK-------LANAHGFISEF--PSGALDNESEKLVQAALESACKGRTVLMIAH---RLSTVQN  157 (181)
Q Consensus        96 ~~----~~--~~~~~~~~~-------~~~~~~~~~~~--P~~~LD~~~~~~i~~~l~~~~~~~tii~vtH---d~~~~~~  157 (181)
                      ..    .+  +.....++.       .....-++.|+  |+++||+..++.+.+.++.  .+.|+|++||   |.+++..
T Consensus        71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~  148 (178)
T 1ye8_A           71 GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKE  148 (178)
T ss_dssp             TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHH
T ss_pred             cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHH
Confidence            00    00  111112222       12334467888  9999999999999998865  4677888885   7788865


Q ss_pred             -CCeEEEEeCCeEEe
Q psy10472        158 -ADLIVVLQAGQIVE  171 (181)
Q Consensus       158 -~d~v~~l~~G~i~~  171 (181)
                       |++    .+|++++
T Consensus       149 i~~r----~~~~i~~  159 (178)
T 1ye8_A          149 IRRL----PGAVLIE  159 (178)
T ss_dssp             HHTC----TTCEEEE
T ss_pred             HHhc----CCcEEEE
Confidence             776    4566655

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.75  E-value=1.4e-18  Score=157.67  Aligned_cols=141  Identities=13%  Similarity=0.047  Sum_probs=92.8

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHH--------hcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALL--------ERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP   80 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l--------~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~   80 (181)
                      +.+++|++|++++|++++|+||||||||||||++        .|.+.|.++...                   +++   .
T Consensus       649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~-------------------~~~---d  706 (934)
T 3thx_A          649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEV-------------------SIV---D  706 (934)
T ss_dssp             CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEE-------------------ECC---S
T ss_pred             eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccc-------------------hHH---H
Confidence            4688999999999999999999999999999999        676666543221                   000   0


Q ss_pred             CCccc-cHHHHhhcCCCCCCH--HHHHHHHHHhcc-ccccccCCCCCCCHHHHHHH-HHHHHHhc--CCcEEEEEecCch
Q psy10472         81 VLFAT-SVRENIRYGDSSVSD--EQIEEAAKLANA-HGFISEFPSGALDNESEKLV-QAALESAC--KGRTVLMIAHRLS  153 (181)
Q Consensus        81 ~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~P~~~LD~~~~~~i-~~~l~~~~--~~~tii~vtHd~~  153 (181)
                      .+|.. ...+++..+......  .++..+++.+.- .-++.|+|++|+|+.....+ +.+++.+.  .|+++|++||+.+
T Consensus       707 ~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e  786 (934)
T 3thx_A          707 CILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE  786 (934)
T ss_dssp             EEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG
T ss_pred             HHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH
Confidence            01111 222333222111111  222333333322 33568999999999887776 66666653  3899999999988


Q ss_pred             hhhcCCeEEEEeCCeEEe
Q psy10472        154 TVQNADLIVVLQAGQIVE  171 (181)
Q Consensus       154 ~~~~~d~v~~l~~G~i~~  171 (181)
                      ....||++..+.+|++..
T Consensus       787 l~~lad~~~~v~ng~v~~  804 (934)
T 3thx_A          787 LTALANQIPTVNNLHVTA  804 (934)
T ss_dssp             GGGGGGTCTTEEEEEEEE
T ss_pred             HHHHhcccceeEeeEEEE
Confidence            887799999999998865

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.75  E-value=2e-20  Score=137.59  Aligned_cols=78  Identities=17%  Similarity=0.090  Sum_probs=65.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++..  ..  ....  +++|++.+|..|+.
T Consensus        20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~--~~--~~~~--~~~q~~~l~~ltv~   92 (158)
T 1htw_A           20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVE--EY--NIAG--KMIYHFDLYRLADP   92 (158)
T ss_dssp             HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEE--EE--EETT--EEEEEEECTTCSCT
T ss_pred             HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeee--ec--cCCC--cceeccccccCCcH
Confidence            45899999999999999999999999999999999999 999999999976642  11  1112  78999888855999


Q ss_pred             HHhhc
Q psy10472         89 ENIRY   93 (181)
Q Consensus        89 enl~~   93 (181)
                      ||+.+
T Consensus        93 e~l~~   97 (158)
T 1htw_A           93 EELEF   97 (158)
T ss_dssp             THHHH
T ss_pred             HHHHH
Confidence            99854

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.75  E-value=5.2e-19  Score=142.73  Aligned_cols=149  Identities=19%  Similarity=0.164  Sum_probs=99.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh----hhh-ccCcEEEEccCCCCccc-cHHHHhhcC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG----TWL-RGNVIGLINQEPVLFAT-SVRENIRYG   94 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~-r~~~i~~v~q~~~l~~~-tv~enl~~~   94 (181)
                      +|++++|+||||||||||+++|+|+++|++|+|.+.|.++.....    ..+ ++..++|++|++.+++. ++++|+.++
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999998765431    112 12248999999988875 899998642


Q ss_pred             C--------------CCCCHHHHHHHHHH-hccccccccCCC---CCCCHHHHHHHHHHHHHhc-C-CcEEEEEecCchh
Q psy10472         95 D--------------SSVSDEQIEEAAKL-ANAHGFISEFPS---GALDNESEKLVQAALESAC-K-GRTVLMIAHRLST  154 (181)
Q Consensus        95 ~--------------~~~~~~~~~~~~~~-~~~~~~~~~~P~---~~LD~~~~~~i~~~l~~~~-~-~~tii~vtHd~~~  154 (181)
                      .              .........+.-+. ..+...+...|.   -.||+.+.+.+.+.++.+. . +.|+|++||+.+.
T Consensus       181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~~  260 (304)
T 1rj9_A          181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGT  260 (304)
T ss_dssp             HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred             HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECCccc
Confidence            1              11112222211110 000001112232   4788887777888777654 3 8999999998655


Q ss_pred             hhcC----------CeEEEEeCCeE
Q psy10472        155 VQNA----------DLIVVLQAGQI  169 (181)
Q Consensus       155 ~~~~----------d~v~~l~~G~i  169 (181)
                      +...          -.|..+..|+-
T Consensus       261 a~gg~~l~i~~~~~~pi~~ig~Ge~  285 (304)
T 1rj9_A          261 AKGGVLIPIVRTLKVPIKFVGVGEG  285 (304)
T ss_dssp             CCCTTHHHHHHHHCCCEEEEECSSS
T ss_pred             ccccHHHHHHHHHCCCeEEEeCCCC
Confidence            3321          46677766653

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.74  E-value=2e-20  Score=143.54  Aligned_cols=156  Identities=12%  Similarity=0.057  Sum_probs=98.2

Q ss_pred             ccccceeeE-EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhcc--CcEEEEccCCCCccc
Q psy10472          9 KTILKDFNL-RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRG--NVIGLINQEPVLFAT   85 (181)
Q Consensus         9 ~~vl~~isl-~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~--~~i~~v~q~~~l~~~   85 (181)
                      .+.|+++.. .+++|++++|+||||||||||++.|++...+..|.|.+.+.+.   +......  ..+++.+|+......
T Consensus         9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   85 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIEKKL   85 (235)
T ss_dssp             CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBTTTE
T ss_pred             chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhhCCE
Confidence            456788877 7999999999999999999999999998888888888766433   2221111  113444443210000


Q ss_pred             cHHHHhh------cCCCCCCHHH----HHHHHHHhccc--cccccCCCCCC--CHHHHHHHHHHHHHhc--CCcEEEEEe
Q psy10472         86 SVRENIR------YGDSSVSDEQ----IEEAAKLANAH--GFISEFPSGAL--DNESEKLVQAALESAC--KGRTVLMIA  149 (181)
Q Consensus        86 tv~enl~------~~~~~~~~~~----~~~~~~~~~~~--~~~~~~P~~~L--D~~~~~~i~~~l~~~~--~~~tii~vt  149 (181)
                      .+.+...      +.....+...    +...+...+..  -++-|+|++.+  |+.....+++.++.+.  .|+|+|++|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~  165 (235)
T 2w0m_A           86 IIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATS  165 (235)
T ss_dssp             EEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             EEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence            1101000      0001112222    22233334555  56789999777  9988888888887753  489999999


Q ss_pred             cCc--------hhhhc-CCeEEEEeCC
Q psy10472        150 HRL--------STVQN-ADLIVVLQAG  167 (181)
Q Consensus       150 Hd~--------~~~~~-~d~v~~l~~G  167 (181)
                      |+.        ..+.. ||+|++|+..
T Consensus       166 h~~~~~~~~~~~~~~~~~d~vi~l~~~  192 (235)
T 2w0m_A          166 QYAITTSQAFGFGVEHVADGIIRFRRM  192 (235)
T ss_dssp             C-----------CHHHHCSEEEEEEEE
T ss_pred             ccCcccccccccchheeeeEEEEEEEE
Confidence            998        44655 9999999754

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.74  E-value=3.8e-19  Score=142.39  Aligned_cols=157  Identities=17%  Similarity=0.167  Sum_probs=96.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc-eEEECCEECCCCChhhhccCcEEEEccCCCC--cc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG-NITISGVDLKHLDGTWLRGNVIGLINQEPVL--FA-   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G-~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l--~~-   84 (181)
                      .++|+++++.+++|++++|+||||||||||+++|+|...|.+| .|.+.+.+   .+...++++ +..++++..+  ++ 
T Consensus        22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r-~~~~~~~~~~~~~~~   97 (296)
T 1cr0_A           22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAED-LIGLHNRVRLRQSDS   97 (296)
T ss_dssp             CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHH-HHHHHTTCCGGGCHH
T ss_pred             HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHH-HHHHHcCCChhhccc
Confidence            3579999999999999999999999999999999999999888 77554433   233333333 3334443322  11 


Q ss_pred             ccH-----------HHHh-h-----cCC--CCCCHHHHHHHH----HHhccccccccCCCC---C---CCH-HHHHHHHH
Q psy10472         85 TSV-----------RENI-R-----YGD--SSVSDEQIEEAA----KLANAHGFISEFPSG---A---LDN-ESEKLVQA  134 (181)
Q Consensus        85 ~tv-----------~enl-~-----~~~--~~~~~~~~~~~~----~~~~~~~~~~~~P~~---~---LD~-~~~~~i~~  134 (181)
                      .+.           .+.+ .     +..  .......+.+.+    ...+..-++-|+|++   +   +|. .....+.+
T Consensus        98 l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~  177 (296)
T 1cr0_A           98 LKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMT  177 (296)
T ss_dssp             HHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHH
Confidence            010           0111 0     111  112222222221    222344566788998   4   455 55677888


Q ss_pred             HHHHhc-C-CcEEEEEecCc--h--------------------hhhc-CCeEEEEeCCeE
Q psy10472        135 ALESAC-K-GRTVLMIAHRL--S--------------------TVQN-ADLIVVLQAGQI  169 (181)
Q Consensus       135 ~l~~~~-~-~~tii~vtHd~--~--------------------~~~~-~d~v~~l~~G~i  169 (181)
                      .|+.++ + |+|||++||+.  +                    .+.. ||+|++|++|+.
T Consensus       178 ~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          178 KLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             HHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             HHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence            887764 3 89999999995  4                    5554 999999998864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.73  E-value=2.5e-19  Score=147.73  Aligned_cols=80  Identities=19%  Similarity=0.167  Sum_probs=61.6

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEc-cCCCC---ccccH
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLIN-QEPVL---FATSV   87 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~-q~~~l---~~~tv   87 (181)
                      ++++||.+++|++++|+||||||||||+++|+|+++|++|.|.++|..  .+.....+ +.++|++ |++.+   +..|+
T Consensus       165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~~~~~~~-~~v~~v~~q~~~~~~~~~~t~  241 (361)
T 2gza_A          165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--ELFLPDHP-NHVHLFYPSEAKEEENAPVTA  241 (361)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CCCCTTCS-SEEEEECC----------CCH
T ss_pred             HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--ccCccccC-CEEEEeecCccccccccccCH
Confidence            499999999999999999999999999999999999999999999842  33322233 3589999 88764   45699


Q ss_pred             HHHhhcC
Q psy10472         88 RENIRYG   94 (181)
Q Consensus        88 ~enl~~~   94 (181)
                      ++||.++
T Consensus       242 ~~~i~~~  248 (361)
T 2gza_A          242 ATLLRSC  248 (361)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998765

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.71  E-value=1.6e-20  Score=154.94  Aligned_cols=151  Identities=17%  Similarity=0.113  Sum_probs=99.3

Q ss_pred             ccceeeEEecC--CcEEEEECCCCCcHHHHHHHHhcCCCCCc----ceEEEC----CEECCCCChhhhccCcEEEEccCC
Q psy10472         11 ILKDFNLRIPA--GQKVAIVGSSGNGKSTIVALLERFYDVSS----GNITIS----GVDLKHLDGTWLRGNVIGLINQEP   80 (181)
Q Consensus        11 vl~~isl~i~~--Ge~~~liG~nGsGKSTLl~~l~gl~~p~~----G~i~i~----g~~i~~~~~~~~r~~~i~~v~q~~   80 (181)
                      +.+.|+++|.+  |+.++|+||||||||||+++|+|+++|++    |+++++    |.++ ..+...+ . .|++++|++
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~-~I~~~~q~~  233 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-P-QMALGHQRY  233 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-H-HHHHHHHHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-H-HHHHHHHHH
Confidence            45679999999  99999999999999999999999999999    998874    4443 2333333 2 388899988


Q ss_pred             CCccccHHHHhhcCCCCCCHHHH-------------HHHHHHhccccccccC---C------CCCCCHHHHHHHHHHHHH
Q psy10472         81 VLFATSVRENIRYGDSSVSDEQI-------------EEAAKLANAHGFISEF---P------SGALDNESEKLVQAALES  138 (181)
Q Consensus        81 ~l~~~tv~enl~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~---P------~~~LD~~~~~~i~~~l~~  138 (181)
                      .+|..|+.+|+.++.........             ..++......-++.++   |      +.++|+..+..+.+.+.+
T Consensus       234 ~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~  313 (365)
T 1lw7_A          234 IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKK  313 (365)
T ss_dssp             HHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHH
T ss_pred             HHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHH
Confidence            77778999999876422111111             1111111222222233   4      458999999999999976


Q ss_pred             hc--CCcEEEEEecCchhhhcCCeEEEE
Q psy10472        139 AC--KGRTVLMIAHRLSTVQNADLIVVL  164 (181)
Q Consensus       139 ~~--~~~tii~vtHd~~~~~~~d~v~~l  164 (181)
                      +.  .+.++|+++|.-.....++++..+
T Consensus       314 l~~~~~~~ililde~~~~~r~~~~i~~i  341 (365)
T 1lw7_A          314 LLDKYKVPYIEIESPSYLDRYNQVKAVI  341 (365)
T ss_dssp             HHHGGGCCCEEEECSSHHHHHHHHHHHH
T ss_pred             HHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence            53  389999999863332335554444

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.71  E-value=1.7e-18  Score=154.41  Aligned_cols=130  Identities=17%  Similarity=0.196  Sum_probs=88.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-CCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-S   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t   86 (181)
                      +.+++|+||+   |++++|+||||||||||||+++|+.. |..|.+.         + . .+ ..+++++|   +|.. +
T Consensus       566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v---------p-a-~~-~~i~~v~~---i~~~~~  627 (765)
T 1ewq_A          566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV---------P-A-EE-AHLPLFDG---IYTRIG  627 (765)
T ss_dssp             CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB---------S-S-SE-EEECCCSE---EEEECC
T ss_pred             ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee---------e-h-hc-cceeeHHH---hhccCC
Confidence            5688999998   99999999999999999999999874 6777642         1 1 12 23788877   5664 8


Q ss_pred             HHHHhhcCCCCCCHHH--HHHHHHHhc-cccccccCC---CCCCCHHHH-HHHHHHHHHhcCCcEEEEEecCchhhhcC
Q psy10472         87 VRENIRYGDSSVSDEQ--IEEAAKLAN-AHGFISEFP---SGALDNESE-KLVQAALESACKGRTVLMIAHRLSTVQNA  158 (181)
Q Consensus        87 v~enl~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~P---~~~LD~~~~-~~i~~~l~~~~~~~tii~vtHd~~~~~~~  158 (181)
                      +.||+..+.+....+.  +..++..+. ..-++.|+|   |++||..+. ..+.+.+.+  .|+++|++||+.+....|
T Consensus       628 ~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~  704 (765)
T 1ewq_A          628 ASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG  704 (765)
T ss_dssp             C------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence            9999988743221222  122232222 234668899   899999875 568887765  589999999999876554

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.71  E-value=3.2e-18  Score=139.40  Aligned_cols=150  Identities=13%  Similarity=0.070  Sum_probs=106.0

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh-----hccCcEEEEccCCCCccc-cHHHHhh
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW-----LRGNVIGLINQEPVLFAT-SVRENIR   92 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~-----~r~~~i~~v~q~~~l~~~-tv~enl~   92 (181)
                      .++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.......     .++..+.+++|...+++. ++++|+.
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~  205 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ  205 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence            3689999999999999999999999999999999999999987654322     122346799999988875 9999987


Q ss_pred             cCC--------------CCCCHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCchhh-
Q psy10472         93 YGD--------------SSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESAC--KGRTVLMIAHRLSTV-  155 (181)
Q Consensus        93 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~--~~~tii~vtHd~~~~-  155 (181)
                      ++.              .......+.+.....  ..+..++|+..||+.+.+.+.+.++.+.  .+.|+|++||..+.. 
T Consensus       206 ~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~--ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~  283 (328)
T 3e70_C          206 HAKARGIDVVLIDTAGRSETNRNLMDEMKKIA--RVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADAR  283 (328)
T ss_dssp             HHHHHTCSEEEEEECCSCCTTTCHHHHHHHHH--HHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSC
T ss_pred             HHHhccchhhHHhhccchhHHHHHHHHHHHHH--HHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccc
Confidence            541              011111111111111  1123566788899888778888777664  389999999965321 


Q ss_pred             --------hc-CCeEEEEeCCeEE
Q psy10472        156 --------QN-ADLIVVLQAGQIV  170 (181)
Q Consensus       156 --------~~-~d~v~~l~~G~i~  170 (181)
                              .. .-.|..+..|+-+
T Consensus       284 ~G~~l~~~~~~~~pi~~i~~Ge~v  307 (328)
T 3e70_C          284 GGAALSISYVIDAPILFVGVGQGY  307 (328)
T ss_dssp             CHHHHHHHHHHTCCEEEEECSSST
T ss_pred             hhHHHHHHHHHCCCEEEEeCCCCc
Confidence                    12 4678888888654

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.71  E-value=1.7e-18  Score=155.12  Aligned_cols=146  Identities=16%  Similarity=0.144  Sum_probs=91.9

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC-CcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-c
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV-SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-S   86 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p-~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-t   86 (181)
                      +.+++|++|+ ++|++++|+||||||||||||+|+|+..+ ..|.      .+   +. . + ..+++++|   +|.. +
T Consensus       595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~v---pa-~-~-~~i~~~~~---i~~~~~  658 (800)
T 1wb9_A          595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YV---PA-Q-K-VEIGPIDR---IFTRVG  658 (800)
T ss_dssp             CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CB---SS-S-E-EEECCCCE---EEEEEC
T ss_pred             ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------cc---ch-h-c-ccceeHHH---HHhhCC
Confidence            4689999999 99999999999999999999999997532 2231      11   11 1 1 13666665   5654 8


Q ss_pred             HHHHhhcCCCCCCHH--HHHHHHHHhc-cccccccCCCCCCCHHHHHHH-HHHHHHhc--CCcEEEEEecCchhhhcCCe
Q psy10472         87 VRENIRYGDSSVSDE--QIEEAAKLAN-AHGFISEFPSGALDNESEKLV-QAALESAC--KGRTVLMIAHRLSTVQNADL  160 (181)
Q Consensus        87 v~enl~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~P~~~LD~~~~~~i-~~~l~~~~--~~~tii~vtHd~~~~~~~d~  160 (181)
                      +.+|+..+......+  ++..++..+. ..-++.|+|++|+|+.....+ +.+++.+.  .|.++|++||+.+....||+
T Consensus       659 ~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~  738 (800)
T 1wb9_A          659 AADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEK  738 (800)
T ss_dssp             -----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhh
Confidence            889987764333222  2233333332 234678999999999766554 66776653  38999999999987766777


Q ss_pred             EEEEeCCeEE
Q psy10472        161 IVVLQAGQIV  170 (181)
Q Consensus       161 v~~l~~G~i~  170 (181)
                      +..+.+|++.
T Consensus       739 ~~~v~n~~~~  748 (800)
T 1wb9_A          739 MEGVANVHLD  748 (800)
T ss_dssp             STTEEEEEEE
T ss_pred             hhceEEEEEE
Confidence            6556666553

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.70  E-value=9.9e-18  Score=153.48  Aligned_cols=137  Identities=17%  Similarity=0.182  Sum_probs=96.0

Q ss_pred             ccccceeeEEecC-------CcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEE-EEccCC
Q psy10472          9 KTILKDFNLRIPA-------GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIG-LINQEP   80 (181)
Q Consensus         9 ~~vl~~isl~i~~-------Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~-~v~q~~   80 (181)
                      ..+++|++|++++       |++++|+||||||||||||++ |++.+                   .+ + +| ||||++
T Consensus       769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~a-q-iG~~Vpq~~  826 (1022)
T 2o8b_B          769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MA-Q-MGCYVPAEV  826 (1022)
T ss_dssp             CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HH-T-TTCCEESSE
T ss_pred             ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------Hh-h-eeEEeccCc
Confidence            5699999999987       999999999999999999999 98763                   11 2 45 899975


Q ss_pred             CCccccHHHHhhc--CCCC-----CCH-----HHHHHHHHHhcc-ccccccCCCCCCCHHH-HHHHHHHHHHhc-C-CcE
Q psy10472         81 VLFATSVRENIRY--GDSS-----VSD-----EQIEEAAKLANA-HGFISEFPSGALDNES-EKLVQAALESAC-K-GRT  144 (181)
Q Consensus        81 ~l~~~tv~enl~~--~~~~-----~~~-----~~~~~~~~~~~~-~~~~~~~P~~~LD~~~-~~~i~~~l~~~~-~-~~t  144 (181)
                      .  ..++.++|..  +...     .+.     .++..++..+.- .-++.|+|++|+|+.. ...++.+++.+. + |++
T Consensus       827 ~--~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~  904 (1022)
T 2o8b_B          827 C--RLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCR  904 (1022)
T ss_dssp             E--EECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCE
T ss_pred             C--CCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCE
Confidence            3  2355555532  1110     010     112222222222 2356899999999987 455778887764 4 899


Q ss_pred             EEEEecCchhhhc-CCeEEEEeCCeEE
Q psy10472        145 VLMIAHRLSTVQN-ADLIVVLQAGQIV  170 (181)
Q Consensus       145 ii~vtHd~~~~~~-~d~v~~l~~G~i~  170 (181)
                      +|++||+++.+.. ||++.++ +|++.
T Consensus       905 vl~~TH~~el~~~~~d~~~v~-~g~~~  930 (1022)
T 2o8b_B          905 TLFSTHYHSLVEDYSQNVAVR-LGHMA  930 (1022)
T ss_dssp             EEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred             EEEEeCCHHHHHHhCCcceee-cCeEE
Confidence            9999999999876 9988876 47765

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.69  E-value=3.1e-18  Score=145.48  Aligned_cols=158  Identities=17%  Similarity=0.148  Sum_probs=100.1

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC----hhhh-ccCcEEEEccCCCCccc-
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD----GTWL-RGNVIGLINQEPVLFAT-   85 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~----~~~~-r~~~i~~v~q~~~l~~~-   85 (181)
                      -+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.+.....    ...+ +++.++|++|++.+++. 
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~  362 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS  362 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence            46899999999999999999999999999999999999999999887754321    0112 22349999999887764 


Q ss_pred             cHHHHhhcCC-------------CCCCHH-HHHHHHHHhcccc-ccccCCC---CCCCHHHHHHHHHHHHHhc--CCcEE
Q psy10472         86 SVRENIRYGD-------------SSVSDE-QIEEAAKLANAHG-FISEFPS---GALDNESEKLVQAALESAC--KGRTV  145 (181)
Q Consensus        86 tv~enl~~~~-------------~~~~~~-~~~~~~~~~~~~~-~~~~~P~---~~LD~~~~~~i~~~l~~~~--~~~ti  145 (181)
                      ++++|+.++.             ....+. .+.++.+...... +....|.   --||+.+.+..++.++.+.  -+.|.
T Consensus       363 tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~~itg  442 (503)
T 2yhs_A          363 VIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTG  442 (503)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHTCCSE
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhcCCCE
Confidence            9999997641             111222 2222222221111 1111232   1356655544445555443  37899


Q ss_pred             EEEecCchh---------hhc-CCeEEEEeCCeE
Q psy10472        146 LMIAHRLST---------VQN-ADLIVVLQAGQI  169 (181)
Q Consensus       146 i~vtHd~~~---------~~~-~d~v~~l~~G~i  169 (181)
                      |++||--..         +.. .-.|.++..|+-
T Consensus       443 vIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge~  476 (503)
T 2yhs_A          443 ITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGER  476 (503)
T ss_dssp             EEEECGGGCSCCTHHHHHHHHHCCCEEEEECSSS
T ss_pred             EEEEcCCCcccccHHHHHHHHHCCCEEEEecCCC
Confidence            999993331         111 346667766643

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.68  E-value=4.1e-18  Score=139.89  Aligned_cols=137  Identities=17%  Similarity=0.111  Sum_probs=94.9

Q ss_pred             ccee-eEEecCCcEEEEECCCCCcHHHHHHHHhcCC--CCCc----ce-EEECCEECCCCChhhhccCcEEEEccCCCCc
Q psy10472         12 LKDF-NLRIPAGQKVAIVGSSGNGKSTIVALLERFY--DVSS----GN-ITISGVDLKHLDGTWLRGNVIGLINQEPVLF   83 (181)
Q Consensus        12 l~~i-sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~--~p~~----G~-i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~   83 (181)
                      |+.+ ++.|++|++++|+||||||||||++.+++..  +|++    |. |+|++++..  .    + +++++++|.+.++
T Consensus       120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~----~-~~i~~i~q~~~~~  192 (349)
T 1pzn_A          120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----P-ERIREIAQNRGLD  192 (349)
T ss_dssp             HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--C----H-HHHHHHHHTTTCC
T ss_pred             HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--C----H-HHHHHHHHHcCCC
Confidence            4444 5789999999999999999999999999998  6776    67 899886531  1    1 2378899998888


Q ss_pred             cccHHHHhhcCCCCCCH---HHHHHHHHHh--------ccccccccCCCCCCCHHH------------HHHHHHHHHHhc
Q psy10472         84 ATSVRENIRYGDSSVSD---EQIEEAAKLA--------NAHGFISEFPSGALDNES------------EKLVQAALESAC  140 (181)
Q Consensus        84 ~~tv~enl~~~~~~~~~---~~~~~~~~~~--------~~~~~~~~~P~~~LD~~~------------~~~i~~~l~~~~  140 (181)
                      ..++.+|+.+.......   +.+..+...+        +..-++-|+|++.+|+..            ...++..|..+.
T Consensus       193 ~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la  272 (349)
T 1pzn_A          193 PDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLA  272 (349)
T ss_dssp             HHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            77999999876422111   1122222222        344567789999999852            244555555543


Q ss_pred             --CCcEEEEEecCchhh
Q psy10472        141 --KGRTVLMIAHRLSTV  155 (181)
Q Consensus       141 --~~~tii~vtHd~~~~  155 (181)
                        .++|+|+++|.....
T Consensus       273 ~~~~~tvii~~h~~~~~  289 (349)
T 1pzn_A          273 NLYDIAVFVTNQVQARP  289 (349)
T ss_dssp             HHTTCEEEEEEECC---
T ss_pred             HHcCcEEEEEccccccc
Confidence              489999999987644

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.66  E-value=3.3e-17  Score=148.35  Aligned_cols=137  Identities=16%  Similarity=0.188  Sum_probs=82.0

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-cceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      .+.|++|+||++++|++++|+||||||||||||+++++.... .|..         .+..   ...++++   ..+|.. 
T Consensus       659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~---------vpa~---~~~i~~~---d~i~~~i  723 (918)
T 3thx_B          659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY---------VPAE---EATIGIV---DGIFTRM  723 (918)
T ss_dssp             SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC---------BSSS---EEEEECC---SEEEEEC
T ss_pred             CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc---------ccch---hhhhhHH---HHHHHhC
Confidence            356899999999999999999999999999999998653211 1110         0000   0012221   223433 


Q ss_pred             cHHHHhhcCCCCCCH--HHHHHHHHHhc-cccccccCCCCCCCHHHHHHHH-HHHHHh-c-CCcEEEEEecCchhhhcCC
Q psy10472         86 SVRENIRYGDSSVSD--EQIEEAAKLAN-AHGFISEFPSGALDNESEKLVQ-AALESA-C-KGRTVLMIAHRLSTVQNAD  159 (181)
Q Consensus        86 tv~enl~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~P~~~LD~~~~~~i~-~~l~~~-~-~~~tii~vtHd~~~~~~~d  159 (181)
                      .+.+++..+......  .+...++..+. ..-++.|+|++|||+.....+. .+++.+ . .|+|+|++||+++.+..||
T Consensus       724 g~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~  803 (918)
T 3thx_B          724 GAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEK  803 (918)
T ss_dssp             ----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHH
T ss_pred             ChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHh
Confidence            566676554332222  22233333322 2346789999999999887776 666665 3 4899999999998775444

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.64  E-value=1.3e-17  Score=137.95  Aligned_cols=124  Identities=20%  Similarity=0.245  Sum_probs=85.6

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-cceEEECCEECCCCChhhhccCcEEEEcc-----CCCCc
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-SGNITISGVDLKHLDGTWLRGNVIGLINQ-----EPVLF   83 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~~i~~v~q-----~~~l~   83 (181)
                      ++|++++  +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++. +   .++. .+++++|     ++..|
T Consensus       126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~-~~~~v~Q~~~g~~~~~~  198 (372)
T 2ewv_A          126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKH-KKSIVNQREVGEDTKSF  198 (372)
T ss_dssp             SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCC-SSSEEEEEEBTTTBSCS
T ss_pred             HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhcc-CceEEEeeecCCCHHHH
Confidence            3566665  8899999999999999999999999999998 899987765442 1   2233 4889999     44444


Q ss_pred             cccHHHHhhcCCCCCCHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEE
Q psy10472         84 ATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVV  163 (181)
Q Consensus        84 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~  163 (181)
                      ..++++|+..                 +..-++.++|+   |++..   ..+++....|.+++.++|+.+....|||++.
T Consensus       199 ~~~l~~~L~~-----------------~pd~illdE~~---d~e~~---~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~  255 (372)
T 2ewv_A          199 ADALRAALRE-----------------DPDVIFVGEMR---DLETV---ETALRAAETGHLVFGTLHTNTAIDTIHRIVD  255 (372)
T ss_dssp             HHHHHHHTTS-----------------CCSEEEESCCC---SHHHH---HHHHHHHTTTCEEEECCCCCSHHHHHHHHHH
T ss_pred             HHHHHHHhhh-----------------CcCEEEECCCC---CHHHH---HHHHHHHhcCCEEEEEECcchHHHHHHHHHH
Confidence            4444444433                 22345667887   66553   3344444458899999998764444666543

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.64  E-value=1.5e-16  Score=124.15  Aligned_cols=70  Identities=10%  Similarity=0.230  Sum_probs=46.3

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-cc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TS   86 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~t   86 (181)
                      .+++|+++||++++|++++|+||||||||||+++|+|++    |.+.++          ..++ .++|++|+. +++ .|
T Consensus        11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~-~i~~v~~d~-~~~~l~   74 (245)
T 2jeo_A           11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQR-KVVILSQDR-FYKVLT   74 (245)
T ss_dssp             ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGC-SEEEEEGGG-GBCCCC
T ss_pred             CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCC-ceEEEeCCc-CccccC
Confidence            356999999999999999999999999999999999976    555443          1233 499999995 554 48


Q ss_pred             HHHHhhc
Q psy10472         87 VRENIRY   93 (181)
Q Consensus        87 v~enl~~   93 (181)
                      +.+++.+
T Consensus        75 ~~~~~~~   81 (245)
T 2jeo_A           75 AEQKAKA   81 (245)
T ss_dssp             HHHHHHH
T ss_pred             HhHhhhh
Confidence            9888764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.64  E-value=6.5e-18  Score=127.62  Aligned_cols=140  Identities=13%  Similarity=0.119  Sum_probs=85.9

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhcCCC-----
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDS-----   96 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~~~~-----   96 (181)
                      |++++|+||||||||||+++|+|+++ ++| |.++|.+..++.  .++ +.+||++|+..-. .+...++.+...     
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~-~~ig~~~~~~~g~-~~~l~~~~~~~~~~~~~   74 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGG-RRIGFDVVTLSGT-RGPLSRVGLEPPPGKRE   74 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTS-SEEEEEEEETTSC-EEEEEECCCCCCSSSCC
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhh-ceEEEEEEecccc-eehhhcccccCCccccc
Confidence            78999999999999999999999999 999 999998774432  234 3599999985110 011112222111     


Q ss_pred             ------CCCHHHHHH----HHHH------hccccccccC--CCCCCCHHHHHHHHHHHHHhcCCcEEE----EEecCchh
Q psy10472         97 ------SVSDEQIEE----AAKL------ANAHGFISEF--PSGALDNESEKLVQAALESACKGRTVL----MIAHRLST  154 (181)
Q Consensus        97 ------~~~~~~~~~----~~~~------~~~~~~~~~~--P~~~LD~~~~~~i~~~l~~~~~~~tii----~vtHd~~~  154 (181)
                            .......++    +++.      .+..-++.|+  |+..+|+...+.+.+++..   ..++|    .|+|+.+ 
T Consensus        75 ~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vsh~~~-  150 (189)
T 2i3b_A           75 CRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVPKGKP-  150 (189)
T ss_dssp             EESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCCCSSC-
T ss_pred             cccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecCCCCc-
Confidence                  001122111    1111      1112345677  7888898877777777653   23444    3449874 


Q ss_pred             hhcCCeEEEEeCCeEEe
Q psy10472        155 VQNADLIVVLQAGQIVE  171 (181)
Q Consensus       155 ~~~~d~v~~l~~G~i~~  171 (181)
                      ...+|+|..+.+|++++
T Consensus       151 ~~~vd~i~~~~~~~i~~  167 (189)
T 2i3b_A          151 LALVEEIRNRKDVKVFN  167 (189)
T ss_dssp             CTTHHHHHTTCCSEEEE
T ss_pred             hHHHHHHeecCCcEEEE
Confidence            22356666678888876

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.62  E-value=1.7e-16  Score=122.60  Aligned_cols=139  Identities=15%  Similarity=0.156  Sum_probs=83.0

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhc--CCCC-----CcceEEECCEECCCCChhh---hccCcEEEEccCCCCccccH
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLER--FYDV-----SSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFATSV   87 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~g--l~~p-----~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~~tv   87 (181)
                      -|++|++++|+||||||||||++.+++  +.+|     ..|.+++++.+..  +...   +.+ .+++.+|       .+
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~--~~~~~~~~~~-~~g~~~~-------~~   89 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF--RPERLLAVAE-RYGLSGS-------DV   89 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC--CHHHHHHHHH-HTTCCHH-------HH
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc--CHHHHHHHHH-HcCCCHH-------HH
Confidence            378999999999999999999999999  5655     6788999886521  2221   222 2444443       35


Q ss_pred             HHHhhcCCCCCCHHH-------HHHHHHHhccccccccCCCCCCCHH-------H-----HHHHHHHHHHh-c-CCcEEE
Q psy10472         88 RENIRYGDSSVSDEQ-------IEEAAKLANAHGFISEFPSGALDNE-------S-----EKLVQAALESA-C-KGRTVL  146 (181)
Q Consensus        88 ~enl~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~P~~~LD~~-------~-----~~~i~~~l~~~-~-~~~tii  146 (181)
                      .+|+.+... .....       +.+.++..+..-++-|.|++.+|+.       .     ...++..+..+ + .|+|||
T Consensus        90 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi  168 (243)
T 1n0w_A           90 LDNVAYARA-FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVV  168 (243)
T ss_dssp             HHTEEEEEC-CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred             hhCeEEEec-CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence            566654322 12111       2222222344456678899888874       2     23344444443 2 389999


Q ss_pred             EEecCchhh-------------------h-cCCeEEEEeCC
Q psy10472        147 MIAHRLSTV-------------------Q-NADLIVVLQAG  167 (181)
Q Consensus       147 ~vtHd~~~~-------------------~-~~d~v~~l~~G  167 (181)
                      +++|.....                   . .||.+++|+.+
T Consensus       169 ~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          169 ITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             EEC-------------------------CCTTCEEEEEEEC
T ss_pred             EEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence            999965432                   2 48999999865

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.62  E-value=8.2e-17  Score=129.60  Aligned_cols=94  Identities=16%  Similarity=0.227  Sum_probs=62.6

Q ss_pred             EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE---CCEECCCCChhhhccCcEEEEccCCC------------
Q psy10472         17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI---SGVDLKHLDGTWLRGNVIGLINQEPV------------   81 (181)
Q Consensus        17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i---~g~~i~~~~~~~~r~~~i~~v~q~~~------------   81 (181)
                      |++..|++++|+|||||||||||++|+|+.+|++|+|.+   +|++++.... ..+.+.+||++|.|.            
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~-~~~~~~~g~v~q~p~~~~~~~~~~~~~  242 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ-LLKFDFGGYVVDTPGFANLEINDIEPE  242 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC-EEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE-EEEcCCCCEEEECcCCCccCCCcCCHH
Confidence            446689999999999999999999999999999999999   8988765442 222224899999985            


Q ss_pred             ----Cccc-cHHHHhhcCCC---CCCHHHHHHHHHHhcc
Q psy10472         82 ----LFAT-SVRENIRYGDS---SVSDEQIEEAAKLANA  112 (181)
Q Consensus        82 ----l~~~-tv~enl~~~~~---~~~~~~~~~~~~~~~~  112 (181)
                          +|+. |+ +|+.|+..   .....++.++++.+++
T Consensus       243 ~~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L  280 (301)
T 1u0l_A          243 ELKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEI  280 (301)
T ss_dssp             HHGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSS
T ss_pred             HHHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCC
Confidence                4654 88 99988632   1223456777777766

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.60  E-value=5.4e-16  Score=133.45  Aligned_cols=139  Identities=16%  Similarity=0.094  Sum_probs=89.6

Q ss_pred             eEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcce--EEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhc
Q psy10472         16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGN--ITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRY   93 (181)
Q Consensus        16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~--i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~   93 (181)
                      +..|.+|++++|+||||||||||+++++|+..|. |.  +++.+++    +...+..+ .    .   -+..++.+....
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee----~~~~l~~~-~----~---~~g~~~~~~~~~  341 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEE----SRAQLLRN-A----Y---SWGMDFEEMERQ  341 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSS----CHHHHHHH-H----H---TTSCCHHHHHHT
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeC----CHHHHHHH-H----H---HcCCCHHHHHhC
Confidence            3479999999999999999999999999998885 54  3444432    11111110 0    0   011122221111


Q ss_pred             C-----CC---CCCH-HHHHHHHH---HhccccccccCCCCCCCHH-----HHHHHHHHHHHhc-CCcEEEEEecCc---
Q psy10472         94 G-----DS---SVSD-EQIEEAAK---LANAHGFISEFPSGALDNE-----SEKLVQAALESAC-KGRTVLMIAHRL---  152 (181)
Q Consensus        94 ~-----~~---~~~~-~~~~~~~~---~~~~~~~~~~~P~~~LD~~-----~~~~i~~~l~~~~-~~~tii~vtHd~---  152 (181)
                      +     ..   ..+. +..+.++.   ..+..-++.| |+++||..     .++.+.++++.++ .|.|+|++||+.   
T Consensus       342 g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~  420 (525)
T 1tf7_A          342 NLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFM  420 (525)
T ss_dssp             TSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSS
T ss_pred             CCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECccccc
Confidence            1     10   0122 22222222   2334456678 99999999     8999999888764 589999999998   


Q ss_pred             -------hhhhc-CCeEEEEeCCe
Q psy10472        153 -------STVQN-ADLIVVLQAGQ  168 (181)
Q Consensus       153 -------~~~~~-~d~v~~l~~G~  168 (181)
                             ..+.. ||+|++|++|+
T Consensus       421 ~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          421 GAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             CCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             CcccccCcccceeeeEEEEEEEEE
Confidence                   66665 99999999886

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.60  E-value=4.5e-16  Score=125.96  Aligned_cols=124  Identities=13%  Similarity=0.128  Sum_probs=85.0

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhcCCC--
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDS--   96 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~~~~--   96 (181)
                      +++|++++|+||||||||||+++|+|+++|..|.                 . .+++|+|++.+++.|+.+|+.+...  
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~-~v~~v~qd~~~~~~t~~e~~~~~~~~g  148 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------P-RVDLVTTDGFLYPNAELQRRNLMHRKG  148 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------C-CEEEEEGGGGBCCHHHHHHTTCTTCTT
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------C-eEEEEecCccCCcccHHHHHHHHHhcC
Confidence            8899999999999999999999999999997653                 2 3899999998887799999976421  


Q ss_pred             ---CCCHHHHHHHHHHhccc----------------------------cccccCCCCCCCHHHHHHHHHHHHHhcCCcEE
Q psy10472         97 ---SVSDEQIEEAAKLANAH----------------------------GFISEFPSGALDNESEKLVQAALESACKGRTV  145 (181)
Q Consensus        97 ---~~~~~~~~~~~~~~~~~----------------------------~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~ti  145 (181)
                         ..+.+.+.+.++.++..                            -++.++|+..+|+...     .+.... + ..
T Consensus       149 ~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~-----~l~~~~-D-~~  221 (312)
T 3aez_A          149 FPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTL-----MVSDLF-D-FS  221 (312)
T ss_dssp             SGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSC-----CGGGGC-S-EE
T ss_pred             CChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchH-----HHHHhc-C-cE
Confidence               12344555666554310                            0244568888875210     111111 3 45


Q ss_pred             EEEecCchhh-hc-CCeEEEEeCC
Q psy10472        146 LMIAHRLSTV-QN-ADLIVVLQAG  167 (181)
Q Consensus       146 i~vtHd~~~~-~~-~d~v~~l~~G  167 (181)
                      |+|+|+.+.. .+ ++|.+.+.++
T Consensus       222 I~V~a~~~~~~~R~i~R~~~~rd~  245 (312)
T 3aez_A          222 LYVDARIEDIEQWYVSRFLAMRTT  245 (312)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHTTT
T ss_pred             EEEECCHHHHHHHHHHHHHHHHhc
Confidence            8888888765 33 6666555554

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.60  E-value=1.7e-16  Score=132.91  Aligned_cols=78  Identities=21%  Similarity=0.163  Sum_probs=55.1

Q ss_pred             ccccceeeEEecCCcE--EEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-c
Q psy10472          9 KTILKDFNLRIPAGQK--VAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-T   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~--~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~   85 (181)
                      .+ |+++||++++|++  ++|+||||||||||+++|+|+.        ++|.++....+...++ .++|++|++.+++ .
T Consensus        28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~l   97 (427)
T 2qag_B           28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ-SNTYDLQESNVRLKL   97 (427)
T ss_dssp             -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE-EEEEEEEC--CEEEE
T ss_pred             ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe-eEEEEeecCcccccc
Confidence            35 9999999999999  9999999999999999999984        3454443322222233 5999999998875 4


Q ss_pred             cHHHHhhcCCC
Q psy10472         86 SVRENIRYGDS   96 (181)
Q Consensus        86 tv~enl~~~~~   96 (181)
                      |+.||+.++..
T Consensus        98 tv~D~~~~g~~  108 (427)
T 2qag_B           98 TIVSTVGFGDQ  108 (427)
T ss_dssp             EEEEEECCCC-
T ss_pred             chhhhhhhhhc
Confidence            99999988753

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.59  E-value=4.5e-16  Score=125.33  Aligned_cols=132  Identities=19%  Similarity=0.154  Sum_probs=62.1

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC-CCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF-YDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-   84 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl-~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-   84 (181)
                      +.+.++++++|+|      +|+||||||||||+++|+|. ..|++| +.++|.++.. . .. . ..+++++|...++. 
T Consensus         9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t-~~-~-~~~~~~~q~~~~~~~   77 (301)
T 2qnr_A            9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T-VQ-I-EASTVEIEERGVKLR   77 (301)
T ss_dssp             ---------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------CEEEEC---CCEE
T ss_pred             CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c-ce-E-eeEEEEecCCCcccC
Confidence            3456999999998      99999999999999999998 889999 8888877643 1 11 2 23799999877654 


Q ss_pred             ccHHHHhhcCCCCCC----HHHHH-------HHHHHh-ccc-----------cccccCCCC-CCCHHHHHHHHHHHHHhc
Q psy10472         85 TSVRENIRYGDSSVS----DEQIE-------EAAKLA-NAH-----------GFISEFPSG-ALDNESEKLVQAALESAC  140 (181)
Q Consensus        85 ~tv~enl~~~~~~~~----~~~~~-------~~~~~~-~~~-----------~~~~~~P~~-~LD~~~~~~i~~~l~~~~  140 (181)
                      .|+.|+..++.....    .....       .....+ +..           -++.++|++ +||+...    ++++.+.
T Consensus        78 ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~----~~l~~l~  153 (301)
T 2qnr_A           78 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV----AFMKAIH  153 (301)
T ss_dssp             EEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH----HHHHHHT
T ss_pred             cchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH----HHHHHHH
Confidence            488888877422100    01111       111111 111           345677987 5999874    3444443


Q ss_pred             -C-CcEEEEEecCch
Q psy10472        141 -K-GRTVLMIAHRLS  153 (181)
Q Consensus       141 -~-~~tii~vtHd~~  153 (181)
                       + +.++|+++||+.
T Consensus       154 ~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          154 NKVNIVPVIAKADTL  168 (301)
T ss_dssp             TTSCEEEEECCGGGS
T ss_pred             hcCCEEEEEEeCCCC
Confidence             2 789999999974

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.59  E-value=3.3e-16  Score=119.09  Aligned_cols=111  Identities=15%  Similarity=0.162  Sum_probs=78.5

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc---ccHHHHhhcCC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA---TSVRENIRYGD   95 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~---~tv~enl~~~~   95 (181)
                      .++|++++|+||||||||||+++|+|++.|                       .++|++|++.+++   .++.+++.+..
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~   59 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------------------RVALLPMDHYYKDLGHLPLEERLRVNY   59 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence            578999999999999999999999999865                       2899999987763   37888766542


Q ss_pred             C---CCCHHHHHHHHHHhccccc---------------------------------cccCCCCC-------CCHHHHHHH
Q psy10472         96 S---SVSDEQIEEAAKLANAHGF---------------------------------ISEFPSGA-------LDNESEKLV  132 (181)
Q Consensus        96 ~---~~~~~~~~~~~~~~~~~~~---------------------------------~~~~P~~~-------LD~~~~~~i  132 (181)
                      .   ....+.+.++++.+++...                                 +.++|+++       ||+.....+
T Consensus        60 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~  139 (211)
T 3asz_A           60 DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERF  139 (211)
T ss_dssp             TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHH
T ss_pred             CChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHH
Confidence            1   1234555566655433211                                 11335666       888888888


Q ss_pred             HHHHHHh--cCCcEEEEEecCc
Q psy10472        133 QAALESA--CKGRTVLMIAHRL  152 (181)
Q Consensus       133 ~~~l~~~--~~~~tii~vtHd~  152 (181)
                      ...+.+.  .+|.|++.++|+.
T Consensus       140 ~r~l~r~~~~~g~t~~~~~~~~  161 (211)
T 3asz_A          140 IRRLKRDVLERGRSLEGVVAQY  161 (211)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHH
Confidence            8888653  3589999999974

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.57  E-value=1.1e-15  Score=127.55  Aligned_cols=141  Identities=14%  Similarity=0.177  Sum_probs=87.1

Q ss_pred             EecCCcEEEEECCCCCcHHHHHH--HHhcCCCCCcc-----eEEECCEECCCCChhhhc--cCcEEEEccCCCCccccHH
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVA--LLERFYDVSSG-----NITISGVDLKHLDGTWLR--GNVIGLINQEPVLFATSVR   88 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~--~l~gl~~p~~G-----~i~i~g~~i~~~~~~~~r--~~~i~~v~q~~~l~~~tv~   88 (181)
                      -|++|++++|+||||||||||++  ++.++.+++.|     .++|++++.  .+...++  .+.+++.+       .++.
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~--~~~~rl~~~a~~~gl~~-------~~vl  244 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT--FRPVRLVSIAQRFGLDP-------DDAL  244 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC--CCHHHHHHHHHHTTCCH-------HHHH
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc--cCHHHHHHHHHHcCCCh-------HhHh
Confidence            37899999999999999999999  44677776544     889988753  2222211  11244433       3678


Q ss_pred             HHhhcCCCCCCH---HHHHHHH---HHhccccccccCCCCCCCHHHH------------HHHHHHHHHhc-C-CcEEEEE
Q psy10472         89 ENIRYGDSSVSD---EQIEEAA---KLANAHGFISEFPSGALDNESE------------KLVQAALESAC-K-GRTVLMI  148 (181)
Q Consensus        89 enl~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~P~~~LD~~~~------------~~i~~~l~~~~-~-~~tii~v  148 (181)
                      +|+.+.......   +.+..+.   ......-++-|.|++.+|....            ..++..|+.+. + |+|||+|
T Consensus       245 eni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv  324 (400)
T 3lda_A          245 NNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVT  324 (400)
T ss_dssp             HTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred             hcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            888775332211   1122222   2233444556778887775422            45666666653 3 8999999


Q ss_pred             ecCc-------------------hhhhc-CCeEEEEeCC
Q psy10472        149 AHRL-------------------STVQN-ADLIVVLQAG  167 (181)
Q Consensus       149 tHd~-------------------~~~~~-~d~v~~l~~G  167 (181)
                      +|..                   ..+.. +|.++.|+.+
T Consensus       325 ~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~  363 (400)
T 3lda_A          325 NQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG  363 (400)
T ss_dssp             EEC--------------------CHHHHHCSEEEEEEEC
T ss_pred             EeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence            9982                   12344 8999999876

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.56  E-value=1.5e-17  Score=126.15  Aligned_cols=131  Identities=18%  Similarity=0.239  Sum_probs=80.4

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCC-------------CCcceEEECCEECCCCChhhhccCcEEEEccCCCCcccc
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYD-------------VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATS   86 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~-------------p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~t   86 (181)
                      ++|++++|+||||||||||+++|+|+++             |..|+  ++|.++...+...+++. +   .|+..++..+
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~-i---~~~~~l~~~~   75 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRD-I---AAGDFIEHAE   75 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHH-H---HHTCEEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHH-H---HcCCCEeeee
Confidence            5799999999999999999999999875             77786  47766655555555532 2   5776666667


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHh--------------------ccccccccC--------CCCCCCHHHHHHHHHHHHH
Q psy10472         87 VRENIRYGDSSVSDEQIEEAAKLA--------------------NAHGFISEF--------PSGALDNESEKLVQAALES  138 (181)
Q Consensus        87 v~enl~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~--------P~~~LD~~~~~~i~~~l~~  138 (181)
                      +.+|+ ++.   ..+.++++++..                    ...-.+.++        +++++|.++.+.+.+.+..
T Consensus        76 ~~~n~-~g~---~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~  151 (198)
T 1lvg_A           76 FSGNL-YGT---SKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAA  151 (198)
T ss_dssp             ETTEE-EEE---EHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             ecCcc-CCC---CHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            77776 442   234444444321                    001011122        3467787777888877765


Q ss_pred             hcCCcEEEEEecCchhhhcCCeEEEEeC
Q psy10472        139 ACKGRTVLMIAHRLSTVQNADLIVVLQA  166 (181)
Q Consensus       139 ~~~~~tii~vtHd~~~~~~~d~v~~l~~  166 (181)
                      ..++   +.++|  +. ..+|+|+++++
T Consensus       152 ~~~~---~~~a~--~~-~~~D~iivnd~  173 (198)
T 1lvg_A          152 ARTD---MESSK--EP-GLFDLVIINDD  173 (198)
T ss_dssp             HHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred             HHHH---HHHhh--cc-CCceEEEECCC
Confidence            4322   23445  11 45888887754

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.56  E-value=2.2e-16  Score=129.92  Aligned_cols=126  Identities=21%  Similarity=0.192  Sum_probs=81.8

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-cceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccHHHHhhcCC
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVS-SGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSVRENIRYGD   95 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv~enl~~~~   95 (181)
                      .+.+|++++|+|||||||||||++|+|+++|+ +|.|...+.++ ...   .+. ..++++|...... .+..+      
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~~-~~~~v~q~~~~~~~~~~~~------  187 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HES-KKCLVNQREVHRDTLGFSE------  187 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CCC-SSSEEEEEEBTTTBSCHHH------
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hhc-cccceeeeeeccccCCHHH------
Confidence            56788999999999999999999999999987 56665433322 211   111 2456666532221 12221      


Q ss_pred             CCCCHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCC
Q psy10472         96 SSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAG  167 (181)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G  167 (181)
                            .+..++. .+..-++.++|+   |.++.+.+.+.   ...|.++++++|+.+.+..|||++.|..|
T Consensus       188 ------~La~aL~-~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~  246 (356)
T 3jvv_A          188 ------ALRSALR-EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA  246 (356)
T ss_dssp             ------HHHHHTT-SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred             ------HHHHHhh-hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence                  2223332 244456788898   66654443333   34589999999999988669998887543

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.55  E-value=1.7e-16  Score=118.83  Aligned_cols=137  Identities=16%  Similarity=0.093  Sum_probs=86.5

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-ccHHHHhhcC------
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSVRENIRYG------   94 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv~enl~~~------   94 (181)
                      |++++|+||||||||||+++|++   |.+|.++++|.++...      . .+++++|....+. .++++|+.+.      
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   71 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------V-VGGYRPPWESDELLALTWKNITDLTVNFLL   71 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------C-CTTCCCGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------h-ccccccCccchhHHHHHHHHHHHHHHHHHh
Confidence            67999999999999999999997   6689999988654321      1 2467777654443 3777776532      


Q ss_pred             CC-------CCCHHHHHHHHHHh---cc------c-------cccccC---C-CCCCCHHHHHHHHHHHHHhc-CCcEEE
Q psy10472         95 DS-------SVSDEQIEEAAKLA---NA------H-------GFISEF---P-SGALDNESEKLVQAALESAC-KGRTVL  146 (181)
Q Consensus        95 ~~-------~~~~~~~~~~~~~~---~~------~-------~~~~~~---P-~~~LD~~~~~~i~~~l~~~~-~~~tii  146 (181)
                      ..       .........+.+.+   +.      .       .+..+.   + ..++|+...+. ++.+.... .+.++|
T Consensus        72 ~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~-~~~~~~~~~~~~~ii  150 (189)
T 2bdt_A           72 AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLEL-VEEFESKGIDERYFY  150 (189)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHH-HHHHHHTTCCTTSEE
T ss_pred             cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHH-HHHHhhcCCCccEEE
Confidence            00       01222222221211   10      0       011111   1 24788887777 77777654 478999


Q ss_pred             EEecC-chhhhc-CCeEEEEeCCeEEe
Q psy10472        147 MIAHR-LSTVQN-ADLIVVLQAGQIVE  171 (181)
Q Consensus       147 ~vtHd-~~~~~~-~d~v~~l~~G~i~~  171 (181)
                      .+||. ++.+.. ||+|+  ++|+++.
T Consensus       151 ~tsh~~~~~~e~~~~~i~--~~g~~~~  175 (189)
T 2bdt_A          151 NTSHLQPTNLNDIVKNLK--TNPRFIF  175 (189)
T ss_dssp             ECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred             eCCCCChhhHHHHHHHHh--hCCcEEE
Confidence            99998 888866 99998  9999876

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.53  E-value=3.9e-14  Score=107.69  Aligned_cols=148  Identities=14%  Similarity=0.031  Sum_probs=88.5

Q ss_pred             ccceeeE-EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHH
Q psy10472         11 ILKDFNL-RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRE   89 (181)
Q Consensus        11 vl~~isl-~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~e   89 (181)
                      .|+.+.. -+++|++++|+||||||||||++.+++  .+..+.++++...  ..+...++.     ..+...+....+.+
T Consensus         8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~   78 (220)
T 2cvh_A            8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQ-----MAETRGLNPEEALS   78 (220)
T ss_dssp             HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHH-----HHHTTTCCHHHHHH
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHH-----HHHhcCCChHHHhh
Confidence            3444443 589999999999999999999999999  4445566666543  123222221     11111222224556


Q ss_pred             HhhcCCCC-CCH--HHHHHHHHHh--ccccccccCCCCCCCHHHH--------HHHHHHHHHhc-C-CcEEEEEecCch-
Q psy10472         90 NIRYGDSS-VSD--EQIEEAAKLA--NAHGFISEFPSGALDNESE--------KLVQAALESAC-K-GRTVLMIAHRLS-  153 (181)
Q Consensus        90 nl~~~~~~-~~~--~~~~~~~~~~--~~~~~~~~~P~~~LD~~~~--------~~i~~~l~~~~-~-~~tii~vtHd~~-  153 (181)
                      ++.+.... ...  +.+..+...+  +..-++-|+|++.+|+...        ..+...|+.+. + ++|+|+++|... 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~  158 (220)
T 2cvh_A           79 RFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFD  158 (220)
T ss_dssp             HEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             cEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEc
Confidence            65543222 111  1233332333  2445677899999997432        33444455543 2 899999999865 


Q ss_pred             ------------hhhc-CCeEEEEeCC
Q psy10472        154 ------------TVQN-ADLIVVLQAG  167 (181)
Q Consensus       154 ------------~~~~-~d~v~~l~~G  167 (181)
                                  .+.. ||.+++|+..
T Consensus       159 ~~~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          159 SRTEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             CTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             CCCCccccCCCcceeecCcEEEEEEEe
Confidence                        3444 9999999754

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.53  E-value=2e-15  Score=128.30  Aligned_cols=54  Identities=13%  Similarity=0.031  Sum_probs=50.5

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCC
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLD   64 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~   64 (181)
                      .+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.++|+++...+
T Consensus        18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~   71 (483)
T 3euj_A           18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST   71 (483)
T ss_dssp             TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred             ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence            589999999999 999999999999999999999999999999999998876543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.52  E-value=4.5e-15  Score=119.49  Aligned_cols=71  Identities=15%  Similarity=0.159  Sum_probs=51.4

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE---CCEECCCCChhhhccCcEEEEccCCCCc-----c-ccHH
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI---SGVDLKHLDGTWLRGNVIGLINQEPVLF-----A-TSVR   88 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i---~g~~i~~~~~~~~r~~~i~~v~q~~~l~-----~-~tv~   88 (181)
                      ++.+|++++|+||||||||||+++|+ +.+|++|+|.+   +|++++.... ..+...+||++|+|.+.     + .|+ 
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~-  237 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP-  237 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence            35579999999999999999999999 99999999999   9988765432 22222489999998542     4 488 


Q ss_pred             HHh
Q psy10472         89 ENI   91 (181)
Q Consensus        89 enl   91 (181)
                      +|+
T Consensus       238 e~l  240 (302)
T 2yv5_A          238 REV  240 (302)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            888

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.52  E-value=1.8e-15  Score=114.20  Aligned_cols=73  Identities=15%  Similarity=0.094  Sum_probs=54.1

Q ss_pred             eEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhhc
Q psy10472         16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIRY   93 (181)
Q Consensus        16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~~   93 (181)
                      |+++++|++++|+||||||||||+++|+|+++    .+.+.+..+...+....+. .++|+||++.+|+. ++.+++.+
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   74 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQE-GVDYFFIDETRFQAMVKEGAFLE   74 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCB-TTTBEECCHHHHHHHHHHTCEEE
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhc-CceEEeccHHHHHHHHhcCcEEe
Confidence            57788999999999999999999999999964    5888887766544332233 48999999887765 77666643

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.49  E-value=1.7e-14  Score=123.84  Aligned_cols=50  Identities=14%  Similarity=0.156  Sum_probs=44.7

Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCC
Q psy10472        118 EFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAG  167 (181)
Q Consensus       118 ~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G  167 (181)
                      |+|+++||+.++..+.+.|+.+.+|.|||+|||+++.+..||++++|.++
T Consensus       424 DEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~  473 (517)
T 4ad8_A          424 DEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ  473 (517)
T ss_dssp             CSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred             eCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence            44889999999999999998876689999999999988789999999654

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.48  E-value=3.2e-13  Score=111.08  Aligned_cols=56  Identities=16%  Similarity=0.186  Sum_probs=46.8

Q ss_pred             cccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCch
Q psy10472        116 ISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       116 ~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~  177 (181)
                      +.|+|+++||+..+..+++.+..+.  .|+|++||. +.  .||++++|++|+++. .++++
T Consensus       297 LLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th~-~~--~~~~i~~l~~G~i~~-~g~~~  352 (359)
T 2o5v_A          297 LLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTEL-AP--GAALTLRAQAGRFTP-VADEE  352 (359)
T ss_dssp             EECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESSC-CT--TCSEEEEEETTEEEE-CCCTT
T ss_pred             EEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEec-cc--cCCEEEEEECCEEEe-cCCHH
Confidence            4456999999999999999998764  799999994 44  899999999999987 45443

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.48  E-value=2.9e-14  Score=119.48  Aligned_cols=131  Identities=15%  Similarity=0.159  Sum_probs=70.5

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc-cc
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TS   86 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~t   86 (181)
                      .+.+++++||+|      +|+||||||||||+++|+|+..|..|.   +|..+...+  ..+...+++++|++.++. .|
T Consensus        23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~~~~~--t~~~~~i~~v~q~~~~~~~Lt   91 (418)
T 2qag_C           23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPSHRIKK--TVQVEQSKVLIKEGGVQLLLT   91 (418)
T ss_dssp             TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC-------CCEEEEEECC------CEEEE
T ss_pred             CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCcccCCcc--ceeeeeEEEEEecCCccccee
Confidence            356899999998      999999999999999999998866551   232221111  111224899999888775 59


Q ss_pred             HHHHhhcCCCCCCH---HHH----HHHHHH-h------------ccc---cccccCCC-CCCCHHHHHHHHHHHHHhcCC
Q psy10472         87 VRENIRYGDSSVSD---EQI----EEAAKL-A------------NAH---GFISEFPS-GALDNESEKLVQAALESACKG  142 (181)
Q Consensus        87 v~enl~~~~~~~~~---~~~----~~~~~~-~------------~~~---~~~~~~P~-~~LD~~~~~~i~~~l~~~~~~  142 (181)
                      +.||+.++......   ..+    ...++. +            +..   -++.++|+ .+||+...    ++++.+..+
T Consensus        92 v~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~~  167 (418)
T 2qag_C           92 IVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHEK  167 (418)
T ss_dssp             EEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTTT
T ss_pred             eeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhcc
Confidence            99998886432111   111    111111 0            011   24566798 69998764    333344457


Q ss_pred             cEEEEEecCch
Q psy10472        143 RTVLMIAHRLS  153 (181)
Q Consensus       143 ~tii~vtHd~~  153 (181)
                      .++|+|.|..+
T Consensus       168 v~iIlVinK~D  178 (418)
T 2qag_C          168 VNIIPLIAKAD  178 (418)
T ss_dssp             SEEEEEEESTT
T ss_pred             CcEEEEEEccc
Confidence            78888877554

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.47  E-value=7.9e-16  Score=125.74  Aligned_cols=75  Identities=16%  Similarity=0.213  Sum_probs=63.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh----hhhccCcEEEEccCCCCcc
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG----TWLRGNVIGLINQEPVLFA   84 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~r~~~i~~v~q~~~l~~   84 (181)
                      +.+|+++||++.+|++++|+||||||||||+++|+|++.|++|+|.+.|.++.....    ...+. .+++++|++.+|.
T Consensus        42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~-~i~~v~q~~~~~~  120 (337)
T 2qm8_A           42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT-RMARLAIDRNAFI  120 (337)
T ss_dssp             HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG-GSTTGGGCTTEEE
T ss_pred             HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh-hheeeccCccccc
Confidence            358999999999999999999999999999999999999999999999988743221    12233 4899999988774

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.45  E-value=6.2e-13  Score=108.46  Aligned_cols=51  Identities=22%  Similarity=0.317  Sum_probs=44.5

Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEe
Q psy10472        115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQ  165 (181)
Q Consensus       115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~  165 (181)
                      ++.|+|+++||+..+..+.+.++.+. ++.|+|+||||.+....||++++|+
T Consensus       276 lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~  327 (339)
T 3qkt_A          276 LILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS  327 (339)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEEE
Confidence            56788999999999999999998864 5789999999977666699999985

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.44  E-value=1.3e-14  Score=116.98  Aligned_cols=73  Identities=16%  Similarity=0.251  Sum_probs=44.2

Q ss_pred             EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE---CCEECCCCChhhhccCcEEEEccCCCCcc-----ccHH
Q psy10472         17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI---SGVDLKHLDGTWLRGNVIGLINQEPVLFA-----TSVR   88 (181)
Q Consensus        17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i---~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-----~tv~   88 (181)
                      +++.+|++++|+||||||||||+++|+|+.+|..|+|.+   +|+.++... ...+.. ++|++|.|.+..     .|+ 
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~-~g~v~dtpg~~~~~l~~lt~-  244 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTS-GGLVADTPGFSSLEFTDIEE-  244 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEET-TEEEESSCSCSSCCCTTCCH-
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcC-CEEEecCCCccccccccCCH-
Confidence            567789999999999999999999999999999999999   888765432 222222 799999997653     377 


Q ss_pred             HHhh
Q psy10472         89 ENIR   92 (181)
Q Consensus        89 enl~   92 (181)
                      ||+.
T Consensus       245 e~l~  248 (307)
T 1t9h_A          245 EELG  248 (307)
T ss_dssp             HHHG
T ss_pred             HHHH
Confidence            8883

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.43  E-value=4e-15  Score=120.03  Aligned_cols=78  Identities=17%  Similarity=0.261  Sum_probs=63.0

Q ss_pred             cccceeeEEe-------------------cCCcEEEEECCCCCcHHHHHHHHhcCCC--CCcceEEE---CCEECCCCCh
Q psy10472         10 TILKDFNLRI-------------------PAGQKVAIVGSSGNGKSTIVALLERFYD--VSSGNITI---SGVDLKHLDG   65 (181)
Q Consensus        10 ~vl~~isl~i-------------------~~Ge~~~liG~nGsGKSTLl~~l~gl~~--p~~G~i~i---~g~~i~~~~~   65 (181)
                      ++++++++.+                   ++|++++|+||||||||||+++|+|++.  |++|+|.+   +|...   +.
T Consensus        49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~---~~  125 (308)
T 1sq5_A           49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH---PN  125 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC---CH
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC---cH
Confidence            5788888887                   8999999999999999999999999988  99999999   88653   22


Q ss_pred             hhhccCcEEEEccCCCCccc-cHHHHhhc
Q psy10472         66 TWLRGNVIGLINQEPVLFAT-SVRENIRY   93 (181)
Q Consensus        66 ~~~r~~~i~~v~q~~~l~~~-tv~enl~~   93 (181)
                      . .++ .++++ |...+++. ++.+|+.+
T Consensus       126 ~-~~~-~~~~v-q~~~~~~~~~~~~~~~~  151 (308)
T 1sq5_A          126 Q-VLK-ERGLM-KKKGFPESYDMHRLVKF  151 (308)
T ss_dssp             H-HHH-HHTCT-TCTTSGGGBCHHHHHHH
T ss_pred             H-HHH-hCCEe-ecCCCCCCccHHHHHHH
Confidence            2 233 36788 77766654 88888765

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.43  E-value=6.4e-15  Score=119.36  Aligned_cols=71  Identities=13%  Similarity=0.084  Sum_probs=54.6

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC--------CCCcceEEECCEECCCCCh---------------hhhccCcEEEE---
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY--------DVSSGNITISGVDLKHLDG---------------TWLRGNVIGLI---   76 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~--------~p~~G~i~i~g~~i~~~~~---------------~~~r~~~i~~v---   76 (181)
                      ++++|+|+|||||||||+.|+|+.        .|+.|+|.++|..+...+.               ..+++ .++++   
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~-~l~~l~~~   83 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELED-ALLDLLDN   83 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHH-HHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHH-HHHHHHhH
Confidence            589999999999999999999997        7899999999998865421               22333 36777   


Q ss_pred             ccCCCCc-cccHHHHhhcC
Q psy10472         77 NQEPVLF-ATSVRENIRYG   94 (181)
Q Consensus        77 ~q~~~l~-~~tv~enl~~~   94 (181)
                      +|++.++ ..++.||..++
T Consensus        84 ~q~~~~~~~~~v~E~~~l~  102 (318)
T 1nij_A           84 LDKGNIQFDRLVIECTGMA  102 (318)
T ss_dssp             HHHTSCCCSEEEEEEETTC
T ss_pred             HhcCCCCCCEEEEeCCCCC
Confidence            6776653 45788877664

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=99.40  E-value=7e-15  Score=113.91  Aligned_cols=63  Identities=11%  Similarity=0.023  Sum_probs=43.3

Q ss_pred             eEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh-------hhhccCcEEEEccC
Q psy10472         16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG-------TWLRGNVIGLINQE   79 (181)
Q Consensus        16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~-------~~~r~~~i~~v~q~   79 (181)
                      +|++.+ ++++|+|||||||||||++|+|++.|++|+|.++|.++...++       ....+..++|++|+
T Consensus        22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD   91 (227)
T ss_dssp             EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred             EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence            777887 8999999999999999999999999999999999988743321       11123459999985

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.39  E-value=1.8e-13  Score=107.26  Aligned_cols=126  Identities=19%  Similarity=0.203  Sum_probs=83.7

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHh---cCCCCCcceEE--------ECCEECCCC-ChhhhccCcEEEEccCCC------
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLE---RFYDVSSGNIT--------ISGVDLKHL-DGTWLRGNVIGLINQEPV------   81 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~---gl~~p~~G~i~--------i~g~~i~~~-~~~~~r~~~i~~v~q~~~------   81 (181)
                      ++|++++|+|||||||||++++|+   |+..|++|.++        .+|.++... ....+++. ++++||.+.      
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  103 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAH-LDVRFVSQNGQLQVI  103 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHT-CCEEEEEETTEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHc-CCEEEecCCCCceEE
Confidence            789999999999999999999999   99999999999        899887432 33445554 899997542      


Q ss_pred             CccccHHHHhhcCCCCCCHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhh--hcCC
Q psy10472         82 LFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTV--QNAD  159 (181)
Q Consensus        82 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~--~~~d  159 (181)
                      ++..++.+|+..       ..+..+...+            +..+.-++.+.+..+.+..+..+|+..++...+  ..+|
T Consensus       104 l~~~~v~~~i~~-------~~v~~~~s~~------------~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~v~~~~~  164 (252)
T 4e22_A          104 LEGEDVSNEIRT-------ETVGNTASQA------------AAFPRVREALLRRQRAFREAPGLIADGRDMGTIVFPDAP  164 (252)
T ss_dssp             ETTEECTTGGGS-------HHHHHHHHHH------------TTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCCCSTTCS
T ss_pred             ECCeehhHHHHH-------HHHHHHHHHh------------cccHHHHHHHHHHHHHHhhCCCEEEEeceeceeecCCCC
Confidence            223366666531       2223332221            222444556666666666555677777777643  3366


Q ss_pred             eEEEEe
Q psy10472        160 LIVVLQ  165 (181)
Q Consensus       160 ~v~~l~  165 (181)
                      ..++|.
T Consensus       165 ~~ifl~  170 (252)
T 4e22_A          165 VKIFLD  170 (252)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            666654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.39  E-value=1.7e-13  Score=112.51  Aligned_cols=98  Identities=18%  Similarity=0.212  Sum_probs=62.3

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-CCcceEEEC-CEECCCCChhhhccCcEEEEccCCCCccc-cHH
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-VSSGNITIS-GVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVR   88 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-p~~G~i~i~-g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~   88 (181)
                      ++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.++ |....    . .+...+++++|++.+++. +++
T Consensus       206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----t-t~~~~i~~v~q~~~l~dtpgv~  279 (358)
T 2rcn_A          206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----T-TTAARLYHFPHGGDVIDSPGVR  279 (358)
T ss_dssp             HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC------------------CCCEEEECTTSCEEEECHHHH
T ss_pred             HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----c-eEEEEEEEECCCCEecCcccHH
Confidence            4556653 4799999999999999999999999999 999999987 65432    1 123358999999988865 888


Q ss_pred             HHhhcCCCCCCHHH----HHHHHHHhcccccccc
Q psy10472         89 ENIRYGDSSVSDEQ----IEEAAKLANAHGFISE  118 (181)
Q Consensus        89 enl~~~~~~~~~~~----~~~~~~~~~~~~~~~~  118 (181)
                      ++...   ....+.    +.++++.+++..+.+.
T Consensus       280 e~~l~---~l~~~e~~~~~~e~l~~~gl~~f~~~  310 (358)
T 2rcn_A          280 EFGLW---HLEPEQITQGFVEFHDYLGHCKYRDC  310 (358)
T ss_dssp             TCCCC---CCCHHHHHHTSGGGGGGTTCSSSTTC
T ss_pred             Hhhhc---CCCHHHHHHHHHHHHHHcCCchhcCC
Confidence            86332   223332    2344555565555443

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.38  E-value=2.6e-14  Score=106.69  Aligned_cols=70  Identities=19%  Similarity=0.168  Sum_probs=51.4

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhc
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRY   93 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~   93 (181)
                      .+++|++++|+||||||||||+++|+|.  |..|.|.++|.++.....   ....++|++|++. ...++.+|+.+
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~---~~~~~~~~~~~~~-~~~~v~~~l~~   74 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK---HGRIDPWLPQSHQ-QNRMIMQIAAD   74 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC---SSCCCTTSSSHHH-HHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh---cccccCCccchhh-hhHHHHHHHHH
Confidence            4789999999999999999999999998  788999999866432110   1123567777543 23477887754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.37  E-value=1.2e-12  Score=106.41  Aligned_cols=121  Identities=16%  Similarity=0.206  Sum_probs=72.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhc-CCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc-cccHHHHhhcCCCCCCHH
Q psy10472         24 KVAIVGSSGNGKSTIVALLER-FYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF-ATSVRENIRYGDSSVSDE  101 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g-l~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~-~~tv~enl~~~~~~~~~~  101 (181)
                      .+.|.||||+|||||++++++ ++.|+.|.+.++|.++.....  .+ ..+++++|.+.+. ..+-     .+  .....
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~-----~~--~~~~~  107 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RK-LELNVVSSPYHLEITPSD-----MG--NNDRI  107 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------------CCEECSSEEEECCC-----------CCHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--cc-ceeeeecccceEEecHhh-----cC--CcchH
Confidence            389999999999999999999 899999999999977543221  12 3478888876432 1110     00  01111


Q ss_pred             HHHHHHHHh-----------------ccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhh
Q psy10472        102 QIEEAAKLA-----------------NAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTV  155 (181)
Q Consensus       102 ~~~~~~~~~-----------------~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~  155 (181)
                      .+++.++.+                 +..-++-|+|+. ||+..+..+.+.+.....++++|++||+++.+
T Consensus       108 ~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l  177 (354)
T 1sxj_E          108 VIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI  177 (354)
T ss_dssp             HHHHHHHHHTTTTC------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred             HHHHHHHHHHHhccccccccccccCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH
Confidence            122222211                 112345677888 99999999999998877789999999997643

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.36  E-value=2.6e-14  Score=111.34  Aligned_cols=68  Identities=15%  Similarity=0.225  Sum_probs=51.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHh---cCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhhc
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLE---RFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIRY   93 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~---gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~~   93 (181)
                      ++++++|+||||||||||+++|+   |+..|+.|+|.++|.+..  .  .... .+++++|+..+++. ++.+++..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~--~--~~~~-~i~~~~~~~~~~~~~~v~~~l~~   97 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS--T--EVGE-MAKQYIEKSLLVPDHVITRLMMS   97 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT--C--HHHH-HHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC--C--hHHH-HHHHHHHcCCCCCHHHHHHHHHH
Confidence            47899999999999999999999   999999999988775421  1  1111 25566777776664 88888753

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.36  E-value=1.2e-13  Score=102.43  Aligned_cols=109  Identities=11%  Similarity=0.138  Sum_probs=69.8

Q ss_pred             eEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhh--c
Q psy10472         16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIR--Y   93 (181)
Q Consensus        16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~--~   93 (181)
                      +|++++|+.++|.||||||||||++++++.+.|..|..                   +.|+.      .....+.+.  +
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-------------------~~~~~------~~~~~~~~~~~~   86 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-------------------GYFFD------TKDLIFRLKHLM   86 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-------------------CCEEE------HHHHHHHHHHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-------------------EEEEE------HHHHHHHHHHHh
Confidence            46788899999999999999999999999987666521                   11110      001111111  0


Q ss_pred             CCCCCCHHHHHHHHHHhccccccccCCCC-CCCHHHHHHHHHHHHHh-cCCcEEEEEecCch
Q psy10472         94 GDSSVSDEQIEEAAKLANAHGFISEFPSG-ALDNESEKLVQAALESA-CKGRTVLMIAHRLS  153 (181)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~-~LD~~~~~~i~~~l~~~-~~~~tii~vtHd~~  153 (181)
                      ......  .....+  ....-++-|+|+. ++|+..++.+.+++... .+++++|++||...
T Consensus        87 ~~~~~~--~~~~~~--~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~  144 (180)
T 3ec2_A           87 DEGKDT--KFLKTV--LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL  144 (180)
T ss_dssp             HHTCCS--HHHHHH--HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred             cCchHH--HHHHHh--cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence            000111  111111  1334456677874 89999999999999765 46899999999764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.34  E-value=4.2e-14  Score=109.14  Aligned_cols=40  Identities=18%  Similarity=0.157  Sum_probs=23.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHh-cCCCC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLE-RFYDV   48 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~-gl~~p   48 (181)
                      .+...++||++++|++++|+||||||||||+++|+ |++++
T Consensus        14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~   54 (231)
T 3lnc_A           14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN   54 (231)
T ss_dssp             --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred             hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence            34678999999999999999999999999999999 99844

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.34  E-value=9.5e-13  Score=104.33  Aligned_cols=128  Identities=16%  Similarity=0.159  Sum_probs=73.7

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcc---c---------
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA---T---------   85 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~---~---------   85 (181)
                      .+++|++++|+||||||||||++.+++...  .|.+ +.|.....      . ..+.|+..+.....   .         
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~-~~v~~~~~e~~~~~~~~r~~~~g~~~~   95 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------T-GPVIYLPAEDPPTAIHHRLHALGAHLS   95 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------C-CCEEEEESSSCHHHHHHHHHHHHTTSC
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------C-ccEEEEECCCCHHHHHHHHHHHHhhcC
Confidence            378999999999999999999999998654  4544 23332110      1 12555544332100   0         


Q ss_pred             -----cHHHHhhcCCC------CCCHHHHHHHHHHh-ccccccccCCCC--CCCHHHH---HHHHHHHHHhc--CCcEEE
Q psy10472         86 -----SVRENIRYGDS------SVSDEQIEEAAKLA-NAHGFISEFPSG--ALDNESE---KLVQAALESAC--KGRTVL  146 (181)
Q Consensus        86 -----tv~enl~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~P~~--~LD~~~~---~~i~~~l~~~~--~~~tii  146 (181)
                           .+.+++.+...      ..+....+.+...+ +..-++-|+|++  ++|+...   ..++..|+.+.  .|+|||
T Consensus        96 ~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi  175 (279)
T 1nlf_A           96 AEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIV  175 (279)
T ss_dssp             HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred             hhhhhhccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEE
Confidence                 11233332211      11223333332222 344466788999  8898544   66777777653  389999


Q ss_pred             EEecCchhh
Q psy10472        147 MIAHRLSTV  155 (181)
Q Consensus       147 ~vtHd~~~~  155 (181)
                      +++|+....
T Consensus       176 ~i~H~~~~~  184 (279)
T 1nlf_A          176 FLHHASKGA  184 (279)
T ss_dssp             EEEEC----
T ss_pred             EEecCCCcc
Confidence            999998754

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.32  E-value=9.2e-14  Score=107.29  Aligned_cols=153  Identities=14%  Similarity=0.131  Sum_probs=81.8

Q ss_pred             ccccee-eEEecCCcEEEEECCCCCcHHHHHH-HHhcCCCCCcceEEECCEECCCCChhhh--ccCcEEEEccCCCCc-c
Q psy10472         10 TILKDF-NLRIPAGQKVAIVGSSGNGKSTIVA-LLERFYDVSSGNITISGVDLKHLDGTWL--RGNVIGLINQEPVLF-A   84 (181)
Q Consensus        10 ~vl~~i-sl~i~~Ge~~~liG~nGsGKSTLl~-~l~gl~~p~~G~i~i~g~~i~~~~~~~~--r~~~i~~v~q~~~l~-~   84 (181)
                      +.|+.+ .--+++|++++|.||||||||||+. ++.+..++..+.++++...    +...+  +...+++.+|+.... .
T Consensus        10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~~~~   85 (247)
T 2dr3_A           10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEEKGM   85 (247)
T ss_dssp             TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHHHTS
T ss_pred             hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhhCCc
Confidence            345555 4468999999999999999999955 4455555545556665532    22211  111245554432100 0


Q ss_pred             ccHHH--HhhcC----------CCCCC----HHHHHHHHHHhccccccccCCCCCC--CHHHHHHHHHHHH-Hhc-CCcE
Q psy10472         85 TSVRE--NIRYG----------DSSVS----DEQIEEAAKLANAHGFISEFPSGAL--DNESEKLVQAALE-SAC-KGRT  144 (181)
Q Consensus        85 ~tv~e--nl~~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~P~~~L--D~~~~~~i~~~l~-~~~-~~~t  144 (181)
                      .++.+  ...++          ....+    .+.+.++++..+...++-|.|+..+  |+.....++..+. ..+ .|+|
T Consensus        86 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~  165 (247)
T 2dr3_A           86 FAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCT  165 (247)
T ss_dssp             EEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCE
T ss_pred             EEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCe
Confidence            01111  00000          00112    2233444444555556667776655  5544444444443 333 4899


Q ss_pred             EEEEecCchh--------h-hcCCeEEEEeC
Q psy10472        145 VLMIAHRLST--------V-QNADLIVVLQA  166 (181)
Q Consensus       145 ii~vtHd~~~--------~-~~~d~v~~l~~  166 (181)
                      +|+++|....        + ..||.|+.|+.
T Consensus       166 vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          166 SIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             EEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             EEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            9999998764        3 34899999964

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.31  E-value=6.9e-14  Score=103.86  Aligned_cols=61  Identities=16%  Similarity=0.186  Sum_probs=43.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCEECCCCC---hhhhccCcEE----EEccCCCCc
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVDLKHLD---GTWLRGNVIG----LINQEPVLF   83 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g~~i~~~~---~~~~r~~~i~----~v~q~~~l~   83 (181)
                      ++++|+|+||||||||+++|+|+++|+   .|.|.++|.++..++   ...+|.+.+|    +++|++.+|
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~   73 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF   73 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE
Confidence            589999999999999999999999998   899999999876554   3345432366    889987766

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.30  E-value=1.6e-12  Score=94.27  Aligned_cols=91  Identities=20%  Similarity=0.224  Sum_probs=62.7

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc--eEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG--NITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G--~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +|+++     +|+.++|+||||||||||++++++.+.+ +|  .+++++.++..                     .    
T Consensus        30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~---------------------~----   78 (149)
T 2kjq_A           30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL---------------------T----   78 (149)
T ss_dssp             HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC---------------------C----
T ss_pred             HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH---------------------H----
Confidence            45555     8999999999999999999999999876 46  45554422110                     0    


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhc-CCcE-EEEEecC
Q psy10472         89 ENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESAC-KGRT-VLMIAHR  151 (181)
Q Consensus        89 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~t-ii~vtHd  151 (181)
                         .+             +  ....-++-|+|+. ++...++.+.+++.... +|++ +|++||.
T Consensus        79 ---~~-------------~--~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~  124 (149)
T 2kjq_A           79 ---DA-------------A--FEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY  124 (149)
T ss_dssp             ---GG-------------G--GGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             ---HH-------------H--hCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence               00             0  1223345677876 66666888889887754 4777 8888884

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.24  E-value=1.3e-13  Score=103.99  Aligned_cols=44  Identities=25%  Similarity=0.358  Sum_probs=32.9

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC-----CCCcceEEE
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY-----DVSSGNITI   55 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~-----~p~~G~i~i   55 (181)
                      +++++  |++++|..++|+|+||||||||++.|+|..     .|+.|++.+
T Consensus        16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~   64 (210)
T 1pui_A           16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL   64 (210)
T ss_dssp             SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred             CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence            56777  889999999999999999999999999998     888887754

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.22  E-value=4.7e-12  Score=108.56  Aligned_cols=67  Identities=19%  Similarity=0.218  Sum_probs=53.7

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP   80 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~   80 (181)
                      .+++++++.+++|+.++|+|||||||||||++|+|+++|++|.|.+.|..-...+.    ...++++.|..
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~----~~~v~~~~r~~  314 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH----ENWIAEVTRTG  314 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC----SSEEEEECBCC
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC----CCeEEEEeecc
Confidence            46788999999999999999999999999999999999999999998865222221    12356666554

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.21  E-value=5.3e-13  Score=111.83  Aligned_cols=80  Identities=16%  Similarity=0.190  Sum_probs=58.5

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC-C---hhhhccCcEEEEc---------
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL-D---GTWLRGNVIGLIN---------   77 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~-~---~~~~r~~~i~~v~---------   77 (181)
                      +|+++ + ..+|++++|+|||||||||||++|+|+++|++|+|.+.+.++... +   ...++. .+++.|         
T Consensus       158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~-~~g~~f~~~lr~~Lr  234 (418)
T 1p9r_A          158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP-RVDMTFARGLRAILR  234 (418)
T ss_dssp             HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG-GGTBCHHHHHHHHGG
T ss_pred             HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc-ccCcCHHHHHHHHhc
Confidence            56666 4 378999999999999999999999999999999999988766321 1   111222 255655         


Q ss_pred             cCCCCc--c-----ccHHHHhhc
Q psy10472         78 QEPVLF--A-----TSVRENIRY   93 (181)
Q Consensus        78 q~~~l~--~-----~tv~enl~~   93 (181)
                      |+|.++  .     .|+.+++.+
T Consensus       235 q~pd~i~vgEiRd~et~~~~l~a  257 (418)
T 1p9r_A          235 QDPDVVMVGEIRDLETAQIAVQA  257 (418)
T ss_dssp             GCCSEEEESCCCSHHHHHHHHHH
T ss_pred             cCCCeEEEcCcCCHHHHHHHHHH
Confidence            888653  2     378888765

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.18  E-value=2.6e-13  Score=107.75  Aligned_cols=80  Identities=18%  Similarity=0.200  Sum_probs=61.9

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCC-CCccc-cH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEP-VLFAT-SV   87 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~-~l~~~-tv   87 (181)
                      .+++++++++++|  ++|+||||||||||+++|+|...+  |.|.++|.++.........+ .++++||.+ ..++. ++
T Consensus        34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~-~i~~vf~~a~~~~p~i~~  108 (274)
T 2x8a_A           34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESER-AVRQVFQRAKNSAPCVIF  108 (274)
T ss_dssp             HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHH-HHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHH-HHHHHHHHHHhcCCCeEe
Confidence            4789999999999  999999999999999999999877  78999998775443333333 378888875 34443 67


Q ss_pred             HHHhhcC
Q psy10472         88 RENIRYG   94 (181)
Q Consensus        88 ~enl~~~   94 (181)
                      .|++.+.
T Consensus       109 ~Deid~~  115 (274)
T 2x8a_A          109 FDEVDAL  115 (274)
T ss_dssp             EETCTTT
T ss_pred             eehhhhh
Confidence            7777653

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.18  E-value=6.4e-12  Score=95.43  Aligned_cols=41  Identities=29%  Similarity=0.456  Sum_probs=34.3

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCEE
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVD   59 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g~~   59 (181)
                      .++|++++|+||||||||||+++|+|+++|.   .|.|.++|..
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~   62 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH   62 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence            5789999999999999999999999999864   5555555543

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.17  E-value=1.2e-12  Score=98.80  Aligned_cols=71  Identities=14%  Similarity=0.056  Sum_probs=50.1

Q ss_pred             eEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhh
Q psy10472         16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIR   92 (181)
Q Consensus        16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~   92 (181)
                      .++.++|++++|+||||||||||+++|++.+    |.+.+++.++..  ....++..+++++|++..++. ++.+++.
T Consensus        23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   94 (200)
T 4eun_A           23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDEDRWPWLRSLAEWM   94 (200)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence            3567789999999999999999999999987    899999877642  111222236788998766653 6766664

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.17  E-value=1.3e-13  Score=114.62  Aligned_cols=144  Identities=15%  Similarity=0.080  Sum_probs=88.2

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhc------------CCCCCcceEEECCEECCCCChhhhccCcE---EEEccCCCC
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLER------------FYDVSSGNITISGVDLKHLDGTWLRGNVI---GLINQEPVL   82 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~g------------l~~p~~G~i~i~g~~i~~~~~~~~r~~~i---~~v~q~~~l   82 (181)
                      .++.|..++|+|+||||||||+++|+|            ...|+.|.|.+.|..+..+......++.+   .++.+.+.+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            467899999999999999999999999            56799999999874321110000001112   366677766


Q ss_pred             ccc-cHHHHhhcCCCCCCHHHHHHHHHHhc-------c-----------------ccccccCCCCCCCHHHHHHHHHHHH
Q psy10472         83 FAT-SVRENIRYGDSSVSDEQIEEAAKLAN-------A-----------------HGFISEFPSGALDNESEKLVQAALE  137 (181)
Q Consensus        83 ~~~-tv~enl~~~~~~~~~~~~~~~~~~~~-------~-----------------~~~~~~~P~~~LD~~~~~~i~~~l~  137 (181)
                      +.. +..+++.       .. ....++.+.       .                 .-.+-++|+..+|+...+..++.+.
T Consensus        96 ~~~~s~~e~L~-------~~-fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~  167 (392)
T 1ni3_A           96 TKGASTGVGLG-------NA-FLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLR  167 (392)
T ss_dssp             CCCCCSSSSSC-------HH-HHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHH-------HH-HHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHHHH
Confidence            643 4433330       00 000000000       0                 0001123455666677777777777


Q ss_pred             Hh-cC-CcEEEEEecCchhhhc-CCeEE-EEeCC-eEEe
Q psy10472        138 SA-CK-GRTVLMIAHRLSTVQN-ADLIV-VLQAG-QIVE  171 (181)
Q Consensus       138 ~~-~~-~~tii~vtHd~~~~~~-~d~v~-~l~~G-~i~~  171 (181)
                      .. .. |.|++  +|+...+.. |+++. .|++| +++.
T Consensus       168 ~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~  204 (392)
T 1ni3_A          168 KITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIR  204 (392)
T ss_dssp             HTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGG
T ss_pred             HHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceee
Confidence            66 54 66653  999988865 99998 89999 7764

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.15  E-value=1.1e-12  Score=118.91  Aligned_cols=62  Identities=23%  Similarity=0.368  Sum_probs=55.2

Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEeecCCc
Q psy10472        114 GFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMLGQH  176 (181)
Q Consensus       114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~~~~~  176 (181)
                      -++.|+||++||+...+.++++|+++. +|.|||+||||++.+..||+|++|      ++|+++.. +++
T Consensus       487 lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~lgpgag~~~G~iv~~-G~~  555 (916)
T 3pih_A          487 IYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDIGPGGGTNGGRVVFQ-GTV  555 (916)
T ss_dssp             EEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEEEESSSGGGCSEEEEE-ECH
T ss_pred             EEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEcCCcccCCCEEEEe-ech
Confidence            467899999999999999999999875 499999999999998779999999      89999873 443

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=99.07  E-value=2.9e-11  Score=98.00  Aligned_cols=82  Identities=17%  Similarity=0.193  Sum_probs=63.6

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCCh----hhhc----cCcEEEE-ccCCCC
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG----TWLR----GNVIGLI-NQEPVL   82 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~----~~~r----~~~i~~v-~q~~~l   82 (181)
                      +++++|++++|++++++|+||+||||++..|++.+.+..|+|.+.+.++.....    ..+.    +..+.++ +|....
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~  174 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA  174 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence            368999999999999999999999999999999999999999998877643221    1221    3458999 777666


Q ss_pred             ccc-cHHHHhhc
Q psy10472         83 FAT-SVRENIRY   93 (181)
Q Consensus        83 ~~~-tv~enl~~   93 (181)
                      .+. ++.+++..
T Consensus       175 ~p~~~~~~~l~~  186 (320)
T 1zu4_A          175 DPASVVFDAIKK  186 (320)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            554 67777653

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.07  E-value=5.2e-11  Score=105.09  Aligned_cols=133  Identities=16%  Similarity=0.095  Sum_probs=92.0

Q ss_pred             eEEecCCcEEEEECCCCCcHHHHHHHHhcCCCC--CcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhc
Q psy10472         16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDV--SSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRY   93 (181)
Q Consensus        16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p--~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~   93 (181)
                      +++++++..++|+|++|+|||||++.|++...+  ..|+| ++|..+.+....+.++ .+++.+|...++..++..|+.-
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~-giti~~~~~~~~~~~~~~nliD   80 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLH-RTTVRTGVAPLLFRGHRVFLLD   80 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHT-TSCCSCEEEEEEETTEEEEEEE
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhc-CCeEEecceEEeeCCEEEEEEe
Confidence            467889999999999999999999999987665  67888 6787776666555444 4888888777665566666643


Q ss_pred             CCCC-CCHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchh
Q psy10472         94 GDSS-VSDEQIEEAAKLANAHGFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLST  154 (181)
Q Consensus        94 ~~~~-~~~~~~~~~~~~~~~~~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~  154 (181)
                      .... .-.......++.++..-++.+ |+.++++.+++.+. .+..  .+.++|++.|.++.
T Consensus        81 TpG~~~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~-~~~~--~~ip~ilv~NKiD~  138 (665)
T 2dy1_A           81 APGYGDFVGEIRGALEAADAALVAVS-AEAGVQVGTERAWT-VAER--LGLPRMVVVTKLDK  138 (665)
T ss_dssp             CCCSGGGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHH-HHHH--TTCCEEEEEECGGG
T ss_pred             CCCccchHHHHHHHHhhcCcEEEEEc-CCcccchhHHHHHH-HHHH--ccCCEEEEecCCch
Confidence            2111 112445666777776666666 78899988774433 3322  37888899998765

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.05  E-value=4e-10  Score=90.33  Aligned_cols=128  Identities=13%  Similarity=0.201  Sum_probs=75.4

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc-eEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhc-----
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSG-NITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRY-----   93 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G-~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~-----   93 (181)
                      .+|++++++|||||||||+++.|++.+.+++| +|.+-+.+...                      .+..+++..     
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r----------------------~~a~eqL~~~~~~~  160 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR----------------------IAAVEQLKTYAELL  160 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS----------------------TTHHHHHHHHHTTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc----------------------chHHHHHHHHHHhc
Confidence            47999999999999999999999999988778 45444333221                      122222211     


Q ss_pred             CC---CCCCHHHHHHHHHHhcc-ccccccCCCCCCCHHHHHHHHHHHHHhc---C-CcEEEE-EecCchhhhc-CCeEEE
Q psy10472         94 GD---SSVSDEQIEEAAKLANA-HGFISEFPSGALDNESEKLVQAALESAC---K-GRTVLM-IAHRLSTVQN-ADLIVV  163 (181)
Q Consensus        94 ~~---~~~~~~~~~~~~~~~~~-~~~~~~~P~~~LD~~~~~~i~~~l~~~~---~-~~tii~-vtHd~~~~~~-~d~v~~  163 (181)
                      +.   .......+..++..+.- +-++-|  |+++|+.....+.++.+...   . +.++++ +||+.+.+.. ++++..
T Consensus       161 gl~~~~~~~~~~l~~al~~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~  238 (296)
T 2px0_A          161 QAPLEVCYTKEEFQQAKELFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSS  238 (296)
T ss_dssp             TCCCCBCSSHHHHHHHHHHGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSS
T ss_pred             CCCeEecCCHHHHHHHHHHhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhc
Confidence            00   01123334444443322 223444  77888876666665554433   2 334444 4999877755 776655


Q ss_pred             EeCCeEEe
Q psy10472        164 LQAGQIVE  171 (181)
Q Consensus       164 l~~G~i~~  171 (181)
                      +..+.++.
T Consensus       239 l~~~giVl  246 (296)
T 2px0_A          239 VPVNQYIF  246 (296)
T ss_dssp             SCCCEEEE
T ss_pred             CCCCEEEE
Confidence            66666654

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.00  E-value=1.6e-12  Score=105.81  Aligned_cols=82  Identities=23%  Similarity=0.334  Sum_probs=60.3

Q ss_pred             ccccceeeEEecCC-------cEEEEECCCCCcHHHHHHHHhcCC----CCCcceEEECCEECCCCChhhhccCcEEEEc
Q psy10472          9 KTILKDFNLRIPAG-------QKVAIVGSSGNGKSTIVALLERFY----DVSSGNITISGVDLKHLDGTWLRGNVIGLIN   77 (181)
Q Consensus         9 ~~vl~~isl~i~~G-------e~~~liG~nGsGKSTLl~~l~gl~----~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~   77 (181)
                      ..+++++++.+++|       +.++|.||||+|||||+++|++.+    .|.+|.+..++.++.... ...++..|.+++
T Consensus        31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~-~~~~~~~v~~iD  109 (334)
T 1in4_A           31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL-TSLERGDVLFID  109 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH-HHCCTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH-HHccCCCEEEEc
Confidence            35788889888876       899999999999999999999998    677787766654432110 112233589999


Q ss_pred             cCCCCccccHHHHhh
Q psy10472         78 QEPVLFATSVRENIR   92 (181)
Q Consensus        78 q~~~l~~~tv~enl~   92 (181)
                      |...+++ ++.|++.
T Consensus       110 E~~~l~~-~~~e~L~  123 (334)
T 1in4_A          110 EIHRLNK-AVEELLY  123 (334)
T ss_dssp             TGGGCCH-HHHHHHH
T ss_pred             chhhcCH-HHHHHHH
Confidence            9877665 6777763

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=99.00  E-value=2.5e-10  Score=84.43  Aligned_cols=40  Identities=30%  Similarity=0.332  Sum_probs=36.6

Q ss_pred             ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE
Q psy10472         13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI   53 (181)
Q Consensus        13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i   53 (181)
                      +++++++.+| +++|+||||||||||+++|.+++.+..|..
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~   57 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKA   57 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGG
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence            7899999999 999999999999999999999988877654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.98  E-value=2.7e-10  Score=85.56  Aligned_cols=35  Identities=23%  Similarity=0.220  Sum_probs=30.1

Q ss_pred             EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc
Q psy10472         17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG   51 (181)
Q Consensus        17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G   51 (181)
                      ++|.+|++++|+||||||||||+++|++++.|+.|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            46889999999999999999999999999977665

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.95  E-value=8.6e-11  Score=88.96  Aligned_cols=69  Identities=22%  Similarity=0.264  Sum_probs=47.1

Q ss_pred             eEEecCCcEEEEECCCCCcHHHHHHHHhcCCC-------------CCcceEEECCEECCCCChhhhccCcEEEEccCCCC
Q psy10472         16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYD-------------VSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL   82 (181)
Q Consensus        16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~-------------p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l   82 (181)
                      |+..-+|++++|+||||||||||++.|++.++             |..|+  ++|.++.-.+...+++.    +.|+..+
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~----i~~~~fl   86 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRN----ISANEFL   86 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHH----HHTTCEE
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhh----hhhhhhh
Confidence            45556899999999999999999999999876             56676  57766554555544432    2344444


Q ss_pred             ccccHHHH
Q psy10472         83 FATSVREN   90 (181)
Q Consensus        83 ~~~tv~en   90 (181)
                      +..++.+|
T Consensus        87 e~~~~~~n   94 (197)
T 3ney_A           87 EFGSYQGN   94 (197)
T ss_dssp             EEEEETTE
T ss_pred             hhhhhhce
Confidence            55566666

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.92  E-value=2.5e-10  Score=87.13  Aligned_cols=58  Identities=22%  Similarity=0.216  Sum_probs=43.5

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCC---CCCcceEEE--------CCEECCC-CChhhhccCcEEEEccCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFY---DVSSGNITI--------SGVDLKH-LDGTWLRGNVIGLINQEP   80 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~---~p~~G~i~i--------~g~~i~~-~~~~~~r~~~i~~v~q~~   80 (181)
                      +.+++|+|||||||||+.++|++.+   .++.|.+..        .|.++.. .....++++ +++++|++
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~   74 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASH-LDVRFVST   74 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHT-CCEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHh-Cceeeecc
Confidence            5689999999999999999999766   788898877        6665432 112234544 88998865

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.92  E-value=5.1e-12  Score=99.97  Aligned_cols=77  Identities=21%  Similarity=0.220  Sum_probs=56.3

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-Cccc-cH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-LFAT-SV   87 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~~~-tv   87 (181)
                      .+++++++++++|  ++|+||||||||||+++|++...  .|.|.+++.++........++ .++++||... .++. ++
T Consensus        63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~i~~  137 (278)
T 1iy2_A           63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAA-RVRDLFETAKRHAPCIVF  137 (278)
T ss_dssp             HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHH-HHHHHHHHHHTSCSEEEE
T ss_pred             HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHH-HHHHHHHHHHhcCCcEEe
Confidence            4678899999999  99999999999999999999885  789999886653322222222 2667787753 3333 66


Q ss_pred             HHHh
Q psy10472         88 RENI   91 (181)
Q Consensus        88 ~enl   91 (181)
                      .|++
T Consensus       138 iDei  141 (278)
T 1iy2_A          138 IDEI  141 (278)
T ss_dssp             EETH
T ss_pred             hhhh
Confidence            6666

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.92  E-value=1.6e-09  Score=86.78  Aligned_cols=122  Identities=16%  Similarity=0.103  Sum_probs=73.9

Q ss_pred             ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhh
Q psy10472         13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIR   92 (181)
Q Consensus        13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~   92 (181)
                      ++++|+  +|++++++|+||+||||+++.|++++.+..|+|.+.+.+.......+          |   +....-..++.
T Consensus        91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~----------q---l~~~~~~~~l~  155 (295)
T 1ls1_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE----------Q---LRLLGEKVGVP  155 (295)
T ss_dssp             CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH----------H---HHHHHHHHTCC
T ss_pred             ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH----------H---HHHhcccCCeE
Confidence            577887  89999999999999999999999999999999999887654311100          0   00000011221


Q ss_pred             cC--CCCCCHHHH-HHHHHHh---cccc-ccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Q psy10472         93 YG--DSSVSDEQI-EEAAKLA---NAHG-FISEFPSGALDNESEKLVQAALESACKGRTVLMIA  149 (181)
Q Consensus        93 ~~--~~~~~~~~~-~~~~~~~---~~~~-~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vt  149 (181)
                      +.  ........+ ..+++.+   +.+- +++..|+.++|......+.++.+......+++++.
T Consensus       156 ~~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~  219 (295)
T 1ls1_A          156 VLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD  219 (295)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred             EEEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence            11  011122222 2333332   2222 34555699999988888877776655555555444

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.91  E-value=1.1e-10  Score=87.94  Aligned_cols=50  Identities=24%  Similarity=0.400  Sum_probs=42.5

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE--EECCEECC
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI--TISGVDLK   61 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i--~i~g~~i~   61 (181)
                      ..+..++..++|++++|+||||||||||+++|++.+. ..|.+  +++|.++.
T Consensus        14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~   65 (200)
T 3uie_A           14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR   65 (200)
T ss_dssp             HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred             HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence            4556666678999999999999999999999999987 67888  88886653

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.90  E-value=1.3e-09  Score=89.33  Aligned_cols=40  Identities=23%  Similarity=0.359  Sum_probs=30.5

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE-EECC
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI-TISG   57 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i-~i~g   57 (181)
                      -+++|+++.|.||+|||||||+..++.......|.+ +++.
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~   97 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA   97 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            367999999999999999999888876544444444 4544

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.90  E-value=8.1e-12  Score=97.37  Aligned_cols=77  Identities=21%  Similarity=0.220  Sum_probs=55.4

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-Cccc-cH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-LFAT-SV   87 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~~~-tv   87 (181)
                      .+++++++++++|  ++|+||||||||||+++|++...  .|.+.+++.++........++ .++++||... .++. ++
T Consensus        39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~i~~  113 (254)
T 1ixz_A           39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAA-RVRDLFETAKRHAPCIVF  113 (254)
T ss_dssp             HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHH-HHHHHHHHHTTSSSEEEE
T ss_pred             HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHH-HHHHHHHHHHhcCCeEEE
Confidence            4688899999999  99999999999999999999875  788999886653222112222 2667777643 3333 56


Q ss_pred             HHHh
Q psy10472         88 RENI   91 (181)
Q Consensus        88 ~enl   91 (181)
                      .|++
T Consensus       114 ~Dei  117 (254)
T 1ixz_A          114 IDEI  117 (254)
T ss_dssp             EETH
T ss_pred             ehhh
Confidence            6666

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.88  E-value=5.9e-10  Score=82.69  Aligned_cols=35  Identities=17%  Similarity=0.146  Sum_probs=29.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCC-CcceEEE
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDV-SSGNITI   55 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p-~~G~i~i   55 (181)
                      +|++++|+||||||||||+++|++++++ ..|.|.+
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~   39 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH   39 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence            6899999999999999999999999874 4565543

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.85  E-value=1.3e-09  Score=82.01  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=24.7

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ...+++|+||++++|++++|+|++||||||+.+.|+..+
T Consensus        11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            356899999999999999999999999999999999765

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=98.84  E-value=8.1e-09  Score=74.63  Aligned_cols=57  Identities=21%  Similarity=0.299  Sum_probs=48.2

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE--eCCe
Q psy10472        112 AHGFISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL--QAGQ  168 (181)
Q Consensus       112 ~~~~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l--~~G~  168 (181)
                      ..-++.|+||++||+.++..+.+.+..+. +|.|+|+||||++....||++++|  ++|.
T Consensus        82 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii~l~~~~g~  141 (148)
T 1f2t_B           82 ISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGS  141 (148)
T ss_dssp             CSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEEEETTE
T ss_pred             CCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEEEEEEcCCCe
Confidence            44567899999999999999999998864 489999999999655569999999  4553

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.81  E-value=1.9e-09  Score=90.20  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=33.1

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      -++++|+++.|+.++|+|+|||||||||++|++..
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            46899999999999999999999999999999984

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.80  E-value=1.3e-09  Score=83.84  Aligned_cols=68  Identities=16%  Similarity=0.110  Sum_probs=47.7

Q ss_pred             ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCC------Chhh---hccCcEEEEccCCCCc
Q psy10472         13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL------DGTW---LRGNVIGLINQEPVLF   83 (181)
Q Consensus        13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~------~~~~---~r~~~i~~v~q~~~l~   83 (181)
                      .+-+.+.++|++++|.|+||||||||+++|+++    .|+|.+.+++....      ....   ...+.++++||.+.++
T Consensus        11 ~~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~   86 (230)
T 2vp4_A           11 GTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTL   86 (230)
T ss_dssp             -CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             CCccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHH
Confidence            334456689999999999999999999999998    78899988764321      1111   0112367888876544


Q ss_pred             c
Q psy10472         84 A   84 (181)
Q Consensus        84 ~   84 (181)
                      .
T Consensus        87 ~   87 (230)
T 2vp4_A           87 T   87 (230)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.78  E-value=1.4e-08  Score=92.26  Aligned_cols=58  Identities=24%  Similarity=0.428  Sum_probs=52.1

Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEee
Q psy10472        115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEM  172 (181)
Q Consensus       115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~  172 (181)
                      ++.|+||++||+...+.++++|++++ .|.|||+|+||++++..||+|++|      ++|+++..
T Consensus       528 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~  592 (972)
T 2r6f_A          528 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAA  592 (972)
T ss_dssp             EEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEE
T ss_pred             EEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEe
Confidence            45678999999999999999999875 599999999999998779999999      78999874

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.77  E-value=9.9e-10  Score=82.86  Aligned_cols=44  Identities=18%  Similarity=0.200  Sum_probs=38.5

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECC
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK   61 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~   61 (181)
                      ..++|++++|+|+||||||||+++|++++++..|.|.+.+.+..
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~   61 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence            36789999999999999999999999999888999888765543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.77  E-value=1.2e-08  Score=83.67  Aligned_cols=68  Identities=18%  Similarity=0.174  Sum_probs=47.3

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE-EECCEECCCCChhhhccCcEEEEccCCCCcc-ccHHHH
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI-TISGVDLKHLDGTWLRGNVIGLINQEPVLFA-TSVREN   90 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i-~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~tv~en   90 (181)
                      +++|+++.|.||+|||||||+..++....+..|.+ ++++....  ...  +.+++|+.+|+..+.. .++.+.
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~~--ra~rlgv~~~~l~i~~~~~~e~~  127 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DPV--YAKNLGVDLKSLLISQPDHGEQA  127 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CHH--HHHHHTCCGGGCEEECCSSHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--chH--HHHHcCCchhhhhhhhccCHHHH
Confidence            77999999999999999999999999888777865 66664322  222  2223677777654433 244443

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.75  E-value=6.2e-09  Score=77.51  Aligned_cols=37  Identities=30%  Similarity=0.489  Sum_probs=32.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCC-----------CcceEEECCEEC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDV-----------SSGNITISGVDL   60 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p-----------~~G~i~i~g~~i   60 (181)
                      .++|+|+||||||||++.++|...|           ..|+|.++|+++
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   78 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   78 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence            6899999999999999999998765           578999999764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.73  E-value=5.9e-09  Score=79.01  Aligned_cols=29  Identities=24%  Similarity=0.331  Sum_probs=27.6

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDV   48 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p   48 (181)
                      ++|++++|+||||||||||++.|++.++|
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            57999999999999999999999999987

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.72  E-value=1.4e-09  Score=88.10  Aligned_cols=46  Identities=22%  Similarity=0.314  Sum_probs=37.2

Q ss_pred             cccceeeEEecCCc------EEEEECCCCCcHHHHHHHHhcCCC--CCcceEEE
Q psy10472         10 TILKDFNLRIPAGQ------KVAIVGSSGNGKSTIVALLERFYD--VSSGNITI   55 (181)
Q Consensus        10 ~vl~~isl~i~~Ge------~~~liG~nGsGKSTLl~~l~gl~~--p~~G~i~i   55 (181)
                      +.|++++..+..++      +++|+||||||||||+++|.+++.  |++|.+.+
T Consensus        74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~  127 (321)
T 3tqc_A           74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV  127 (321)
T ss_dssp             HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred             HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence            45667777777766      999999999999999999999987  45666444

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.71  E-value=2.3e-09  Score=86.29  Aligned_cols=49  Identities=18%  Similarity=0.326  Sum_probs=43.3

Q ss_pred             eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC
Q psy10472         14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH   62 (181)
Q Consensus        14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~   62 (181)
                      .++++.++|++++|+|||||||||+++.|++++.+..|+|.+.+.+...
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r  144 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR  144 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence            3566678899999999999999999999999999999999998877643

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.71  E-value=7.7e-09  Score=82.62  Aligned_cols=58  Identities=12%  Similarity=0.064  Sum_probs=46.3

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhcC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYG   94 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~~   94 (181)
                      +++.+++|+||||||||||.+.|.+++.+. |              .. + +.+.+|+|+..+++.+.++|+.++
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g--------------~~-~-~~~~iv~~D~f~~~~~~~~~l~~~   86 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y--------------GG-E-KSIGYASIDDFYLTHEDQLKLNEQ   86 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H--------------GG-G-SCEEEEEGGGGBCCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C--------------CC-C-ceEEEeccccccCChHHHHHHhcc
Confidence            468899999999999999999999998763 2              01 2 225666999999988999998653

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.70  E-value=3.5e-08  Score=88.91  Aligned_cols=58  Identities=24%  Similarity=0.473  Sum_probs=51.9

Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE------eCCeEEee
Q psy10472        115 FISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEM  172 (181)
Q Consensus       115 ~~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l------~~G~i~~~  172 (181)
                      ++.|+||++||+...+.++++++.+. .|.|||+|+||++.+..||+|++|      ++|+++..
T Consensus       403 lILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~  467 (842)
T 2vf7_A          403 YVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYS  467 (842)
T ss_dssp             EEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEE
T ss_pred             EEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEe
Confidence            46788999999999999999998875 599999999999988779999999      78999874

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.70  E-value=1.1e-09  Score=85.72  Aligned_cols=39  Identities=28%  Similarity=0.454  Sum_probs=35.7

Q ss_pred             cccccceeeEEecC---CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472          8 LKTILKDFNLRIPA---GQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus         8 ~~~vl~~isl~i~~---Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ..++|+++||+|.+   |++++|+|++||||||+.++|++.+
T Consensus        31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            35699999999999   9999999999999999999999854

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.69  E-value=3.9e-09  Score=77.41  Aligned_cols=38  Identities=21%  Similarity=0.276  Sum_probs=33.2

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK   61 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~   61 (181)
                      .+|++++|+|||||||||++++|++.+    |.+.+++.++.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~   43 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH   43 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence            468999999999999999999999875    88889886654

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.69  E-value=3.8e-09  Score=91.28  Aligned_cols=43  Identities=33%  Similarity=0.353  Sum_probs=38.5

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc-eEE-ECCEEC
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG-NIT-ISGVDL   60 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G-~i~-i~g~~i   60 (181)
                      .+++|++++|+|+||||||||+++|++.+.|++| ++. ++|.++
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            5789999999999999999999999999999987 774 888654

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.68  E-value=2.8e-09  Score=88.16  Aligned_cols=44  Identities=25%  Similarity=0.287  Sum_probs=39.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI   55 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i   55 (181)
                      ..+++++++.+++|++++|+||||||||||+++|+|..   +|.+..
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~  199 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN  199 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence            45789999999999999999999999999999999963   677654

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.64  E-value=5.6e-09  Score=91.13  Aligned_cols=65  Identities=12%  Similarity=0.141  Sum_probs=53.1

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc-ceEEECCEECCCCChhhhccCcEEEEccC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS-GNITISGVDLKHLDGTWLRGNVIGLINQE   79 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~-G~i~i~g~~i~~~~~~~~r~~~i~~v~q~   79 (181)
                      ..+++++++.+.+|+.++|+||||||||||+++|++++++.. |.+.+++.......      ..++++|+.
T Consensus        47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~------p~i~~~p~g  112 (604)
T 3k1j_A           47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM------PRIKTVPAC  112 (604)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS------CEEEEEETT
T ss_pred             hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC------CcEEEEecc
Confidence            457899999999999999999999999999999999999887 78888776543221      236777654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.62  E-value=2.2e-08  Score=75.47  Aligned_cols=31  Identities=23%  Similarity=0.303  Sum_probs=28.1

Q ss_pred             EEecCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      -++++|.+++|+|++|||||||++.|++.++
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3578899999999999999999999999864

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.60  E-value=2.4e-08  Score=74.57  Aligned_cols=37  Identities=30%  Similarity=0.504  Sum_probs=31.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC-----CC------cceEEECCEEC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD-----VS------SGNITISGVDL   60 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~-----p~------~G~i~i~g~~i   60 (181)
                      .++|+|+||||||||++.++|...     |+      .|+|.++|+++
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   54 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   54 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence            589999999999999999999853     43      57899999764

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.59  E-value=2.8e-08  Score=83.27  Aligned_cols=49  Identities=14%  Similarity=0.147  Sum_probs=42.6

Q ss_pred             ccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEEe
Q psy10472        117 SEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQ  165 (181)
Q Consensus       117 ~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l~  165 (181)
                      .|+|+++||+..+..+.+.+.... ++.++|++||+...+..||+++.+.
T Consensus       361 lDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~  410 (430)
T 1w1w_A          361 LDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY  410 (430)
T ss_dssp             ESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred             eCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence            345999999999999999998875 4789999999987777799999986

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.57  E-value=4.4e-08  Score=82.70  Aligned_cols=48  Identities=10%  Similarity=0.181  Sum_probs=39.4

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc-eEEECCE
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG-NITISGV   58 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G-~i~i~g~   58 (181)
                      .|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.
T Consensus       192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~  240 (454)
T 2r6a_A          192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL  240 (454)
T ss_dssp             HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred             HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence            57777767999999999999999999999999988766445 5666543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.52  E-value=1.2e-08  Score=87.96  Aligned_cols=47  Identities=17%  Similarity=0.384  Sum_probs=41.5

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCE
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGV   58 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~   58 (181)
                      ++.++++++ +|+.++|+||||+|||||+++|++.+.+..|.|.+.|.
T Consensus        98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~  144 (543)
T 3m6a_A           98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV  144 (543)
T ss_dssp             HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred             HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence            567777777 89999999999999999999999999999999988774

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.51  E-value=8.2e-09  Score=84.11  Aligned_cols=52  Identities=17%  Similarity=0.252  Sum_probs=45.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEEC
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL   60 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i   60 (181)
                      ..+++++++.+.+|.+++|+|++|||||||++.|++.+.+..|+|.+-+.+.
T Consensus        43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~   94 (341)
T 2p67_A           43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   94 (341)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence            3577888999999999999999999999999999999988888887766554

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.51  E-value=4e-08  Score=71.63  Aligned_cols=33  Identities=27%  Similarity=0.356  Sum_probs=27.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG   57 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g   57 (181)
                      .|++++|+||||||||||+++|++.+.+    +++++
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~   35 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS   35 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence            4678999999999999999999998754    55554

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.48  E-value=1.2e-07  Score=79.65  Aligned_cols=38  Identities=32%  Similarity=0.342  Sum_probs=33.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC------------CCcceEEECCEECC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD------------VSSGNITISGVDLK   61 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~------------p~~G~i~i~g~~i~   61 (181)
                      .++|+|+||||||||++.|+|...            |..|.+.++|+++.
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~  231 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYV  231 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEE
Confidence            799999999999999999999864            67899999998653

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.45  E-value=8.7e-08  Score=73.84  Aligned_cols=45  Identities=18%  Similarity=0.222  Sum_probs=32.8

Q ss_pred             ccceeeEEec---CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEEC
Q psy10472         11 ILKDFNLRIP---AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS   56 (181)
Q Consensus        11 vl~~isl~i~---~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~   56 (181)
                      -|+++||.+.   +|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus        12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~   59 (229)
T 4eaq_A           12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT   59 (229)
T ss_dssp             --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence            3778888887   8999999999999999999999999887 6666543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.44  E-value=1.3e-07  Score=68.15  Aligned_cols=32  Identities=25%  Similarity=0.408  Sum_probs=26.8

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhc
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~g   44 (181)
                      +.+.++++.+| +.+|+|||||||||++.+|.-
T Consensus        14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            35567777765 999999999999999999973

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.44  E-value=4.7e-08  Score=71.95  Aligned_cols=40  Identities=33%  Similarity=0.497  Sum_probs=32.7

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc--eEEECCEEC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSG--NITISGVDL   60 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G--~i~i~g~~i   60 (181)
                      .+|++++|+|++||||||+.++|++.+++ .|  .+.+++..+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~   44 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI   44 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence            46899999999999999999999998766 56  666666443

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.43  E-value=1.7e-08  Score=86.33  Aligned_cols=77  Identities=21%  Similarity=0.220  Sum_probs=55.6

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC-Cccc-cH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV-LFAT-SV   87 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~-l~~~-tv   87 (181)
                      .+++++++.+++|  +.|+||||+|||||+++|++...  .+.+.+++.++.........+ .+..+||... ..+. .+
T Consensus        54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~-~v~~lfq~a~~~~p~il~  128 (499)
T 2dhr_A           54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAA-RVRDLFETAKRHAPCIVF  128 (499)
T ss_dssp             GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHH-HHHHHTTTSSSSSSCEEE
T ss_pred             hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHH-HHHHHHHHHHhcCCCEEE
Confidence            4678889999998  99999999999999999999874  788999987765432222222 2566777653 2333 55


Q ss_pred             HHHh
Q psy10472         88 RENI   91 (181)
Q Consensus        88 ~enl   91 (181)
                      .|++
T Consensus       129 IDEI  132 (499)
T 2dhr_A          129 IDEI  132 (499)
T ss_dssp             EECG
T ss_pred             EehH
Confidence            5666

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.42  E-value=4.9e-08  Score=79.82  Aligned_cols=41  Identities=24%  Similarity=0.487  Sum_probs=35.5

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEEC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL   60 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i   60 (181)
                      +++.+++|+|++|||||||++.|+|.+.+..|+|.+.+.+.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp  112 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP  112 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence            34789999999999999999999999988888887766543

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=98.39  E-value=6.7e-07  Score=66.12  Aligned_cols=55  Identities=22%  Similarity=0.274  Sum_probs=47.7

Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEE--eCCe
Q psy10472        114 GFISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL--QAGQ  168 (181)
Q Consensus       114 ~~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l--~~G~  168 (181)
                      -++.|+|+++||+.++..+.++++.+.++.++|+|||+......||+++.+  .+|.
T Consensus        89 ~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~~g~  145 (173)
T 3kta_B           89 FYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMRDGV  145 (173)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEETTE
T ss_pred             EEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEecCCE
Confidence            456899999999999999999999887778999999998887779999865  4664

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.35  E-value=7.3e-08  Score=72.94  Aligned_cols=43  Identities=28%  Similarity=0.337  Sum_probs=37.6

Q ss_pred             EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc--eEEECCEE
Q psy10472         17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG--NITISGVD   59 (181)
Q Consensus        17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G--~i~i~g~~   59 (181)
                      +.+.+|.+++|+|++||||||+.+.|++.+.|..|  .+.+++..
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~   64 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN   64 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence            44678999999999999999999999999988888  88887644

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.29  E-value=1.5e-07  Score=78.81  Aligned_cols=48  Identities=23%  Similarity=0.276  Sum_probs=42.5

Q ss_pred             ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCC
Q psy10472         13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH   62 (181)
Q Consensus        13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~   62 (181)
                      ++++|+  ++++++++|+|||||||++..|++.+.+..|+|.+.+.+...
T Consensus        91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r  138 (425)
T 2ffh_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (425)
T ss_dssp             CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred             ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence            467777  899999999999999999999999999999999998876543

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.26  E-value=3.3e-07  Score=74.90  Aligned_cols=45  Identities=27%  Similarity=0.424  Sum_probs=34.5

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhc--CCCCCcceEEECC
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLER--FYDVSSGNITISG   57 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~g--l~~p~~G~i~i~g   57 (181)
                      .+|++++++++   .++|+|++|||||||++.|+|  ++++.+|.+....
T Consensus        25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p   71 (360)
T 3t34_A           25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP   71 (360)
T ss_dssp             CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred             cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence            57899999998   999999999999999999999  5677777665443

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.25  E-value=8.4e-07  Score=65.69  Aligned_cols=49  Identities=22%  Similarity=0.439  Sum_probs=27.2

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC----CC----CCcceEEECCE
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF----YD----VSSGNITISGV   58 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl----~~----p~~G~i~i~g~   58 (181)
                      ..++++++++.++. .++++|++|+|||||++.+.+-    +.    ++.+.+.++|.
T Consensus        11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~   67 (190)
T 1m2o_B           11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI   67 (190)
T ss_dssp             -------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred             HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence            34788999988877 7899999999999999999972    22    23455666654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.25  E-value=8.9e-07  Score=64.58  Aligned_cols=27  Identities=33%  Similarity=0.453  Sum_probs=23.5

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++|..++|+|++|+|||||++.+++..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999999865

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=98.24  E-value=6.6e-07  Score=67.59  Aligned_cols=31  Identities=26%  Similarity=0.443  Sum_probs=25.9

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHh
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLE   43 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~   43 (181)
                      +.+.++++.+| +++|+|||||||||++.+|.
T Consensus        14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence            34566777765 99999999999999999885

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.21  E-value=1.1e-06  Score=72.13  Aligned_cols=40  Identities=20%  Similarity=0.316  Sum_probs=31.5

Q ss_pred             CCcE-EEEECCCCCcHHHHHHHHhcCCC-----------CCcceEEECCEEC
Q psy10472         21 AGQK-VAIVGSSGNGKSTIVALLERFYD-----------VSSGNITISGVDL   60 (181)
Q Consensus        21 ~Ge~-~~liG~nGsGKSTLl~~l~gl~~-----------p~~G~i~i~g~~i   60 (181)
                      .|-. ++|+|++|||||||++.|+|...           |..|.|.++|.++
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v  228 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI  228 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence            3444 99999999999999999999876           6778999988654

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.20  E-value=7.1e-07  Score=66.91  Aligned_cols=29  Identities=31%  Similarity=0.542  Sum_probs=24.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITISG   57 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g   57 (181)
                      +++|+|||||||||+.++|+++     |...+++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~   32 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA   32 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence            6899999999999999999983     5555544

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.19  E-value=1.4e-07  Score=75.49  Aligned_cols=48  Identities=23%  Similarity=0.317  Sum_probs=42.0

Q ss_pred             ce-eeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECC
Q psy10472         13 KD-FNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK   61 (181)
Q Consensus        13 ~~-isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~   61 (181)
                      ++ ++++.+ |++++++|++|+||||++..|++.+.+..++|.+.+.+..
T Consensus        89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~  137 (297)
T 1j8m_F           89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY  137 (297)
T ss_dssp             CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            35 777766 9999999999999999999999999988899998776654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.18  E-value=4.1e-07  Score=67.87  Aligned_cols=50  Identities=26%  Similarity=0.465  Sum_probs=38.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC--------CCCCcceEEECCEE
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF--------YDVSSGNITISGVD   59 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl--------~~p~~G~i~i~g~~   59 (181)
                      ..+++++|+..++. .++++|++|+|||||++.+.+-        ..++.+.+.++|..
T Consensus        13 ~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~   70 (198)
T 1f6b_A           13 SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT   70 (198)
T ss_dssp             CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred             HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence            46788999888877 5799999999999999999872        22345666666643

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.17  E-value=5.7e-07  Score=66.43  Aligned_cols=40  Identities=28%  Similarity=0.418  Sum_probs=33.2

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE-EECC
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI-TISG   57 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i-~i~g   57 (181)
                      ...+|.+++|+|++||||||+.+.|+..+.+..+.+ .+++
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~   49 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG   49 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence            345789999999999999999999999987777766 4444

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=98.16  E-value=3.6e-06  Score=69.10  Aligned_cols=51  Identities=18%  Similarity=0.247  Sum_probs=44.1

Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEe
Q psy10472        115 FISEFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ  165 (181)
Q Consensus       115 ~~~~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~  165 (181)
                      ++.|+|+++||+..+..+.+.+..+.++.+||+|||+++....||++++|+
T Consensus       309 lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l~  359 (371)
T 3auy_A          309 IILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVK  359 (371)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEEE
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEEE
Confidence            445779999999999999999988765679999999998655699999997

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.15  E-value=1e-06  Score=65.21  Aligned_cols=32  Identities=22%  Similarity=0.490  Sum_probs=26.6

Q ss_pred             eeeEEecCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      ++|+...+|..++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57888999999999999999999999999875

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.14  E-value=9.7e-07  Score=66.31  Aligned_cols=30  Identities=20%  Similarity=0.351  Sum_probs=26.5

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      ...+|.+++|+||||||||||.+.|+..++
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            467899999999999999999999998764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.10  E-value=2.6e-06  Score=72.39  Aligned_cols=34  Identities=24%  Similarity=0.491  Sum_probs=27.6

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++++.++.|  +.|.||+|+|||||++++++..
T Consensus        40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence            345566666766  8899999999999999999853

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.10  E-value=4e-06  Score=60.40  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=21.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      .++|+|++|+|||||++.++|...
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~~   28 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGENV   28 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCe
Confidence            689999999999999999998653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.08  E-value=1.9e-06  Score=71.46  Aligned_cols=40  Identities=28%  Similarity=0.419  Sum_probs=33.6

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcC-----------CCCCcceEEECC
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERF-----------YDVSSGNITISG   57 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl-----------~~p~~G~i~i~g   57 (181)
                      .+..|..++|+|+||+|||||++.|+|.           ..|..|.+.+.+
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~   68 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD   68 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence            4677889999999999999999999998           678888887765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.07  E-value=2.6e-06  Score=62.29  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|++|+|||||++.+++.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999984

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=98.06  E-value=2.9e-07  Score=75.36  Aligned_cols=38  Identities=37%  Similarity=0.524  Sum_probs=34.4

Q ss_pred             ccccceeeEEecCCcE--EEEECCCCCcHHHHHHHHhcCC
Q psy10472          9 KTILKDFNLRIPAGQK--VAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~--~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ..+++.+++.+++|++  ++|+|++||||||+.++|++.+
T Consensus         9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A            9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            4578889999999999  9999999999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.05  E-value=1.8e-06  Score=64.50  Aligned_cols=22  Identities=27%  Similarity=0.678  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      +++|+|+|||||||+.+.|+++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFREL   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHHHC
Confidence            6899999999999999999993

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.05  E-value=1.3e-07  Score=76.51  Aligned_cols=48  Identities=15%  Similarity=0.230  Sum_probs=39.9

Q ss_pred             ccccceeeEEecCCcE--EEEECCCCCcHHHHHHHHhcCCCCCcceEEEC
Q psy10472          9 KTILKDFNLRIPAGQK--VAIVGSSGNGKSTIVALLERFYDVSSGNITIS   56 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~--~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~   56 (181)
                      ..+++.++..++.|++  +.+.||+|+||||+++++++.+.+..+.+.+.
T Consensus        31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~   80 (340)
T 1sxj_C           31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVL   80 (340)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred             HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence            3477888888999998  99999999999999999999887766554333

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=98.01  E-value=2.1e-06  Score=63.50  Aligned_cols=37  Identities=27%  Similarity=0.262  Sum_probs=29.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECCEE
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISGVD   59 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g~~   59 (181)
                      .+++|+|+||||||||++.|.+.+++.   -|.|..++.+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            589999999999999999999876543   4677776543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.00  E-value=2e-05  Score=63.97  Aligned_cols=29  Identities=21%  Similarity=0.456  Sum_probs=25.7

Q ss_pred             CCc--EEEEECCCCCcHHHHHHHHhcCCCCC
Q psy10472         21 AGQ--KVAIVGSSGNGKSTIVALLERFYDVS   49 (181)
Q Consensus        21 ~Ge--~~~liG~nGsGKSTLl~~l~gl~~p~   49 (181)
                      .+.  .+.|.||+|+|||||++.+++...+.
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~   71 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK   71 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence            456  89999999999999999999987665

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.98  E-value=1.8e-06  Score=64.53  Aligned_cols=35  Identities=29%  Similarity=0.432  Sum_probs=27.8

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEEC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL   60 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i   60 (181)
                      ..+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~   52 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL   52 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence            4589999999999999999998865    4556655443

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.97  E-value=3.9e-06  Score=61.58  Aligned_cols=25  Identities=36%  Similarity=0.597  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDV   48 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p   48 (181)
                      .++|+|++|+|||||++.+++...+
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~~~   28 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTKKS   28 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC---
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCc
Confidence            5899999999999999999997544

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.97  E-value=4.4e-06  Score=71.46  Aligned_cols=50  Identities=16%  Similarity=0.265  Sum_probs=41.9

Q ss_pred             ceeeEEecCCcEEEEECCCCCcHHHHHHHHhc--CCCCCcceEEECCEECCC
Q psy10472         13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLER--FYDVSSGNITISGVDLKH   62 (181)
Q Consensus        13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~g--l~~p~~G~i~i~g~~i~~   62 (181)
                      +.+++++.++..+.|.|++||||||++++|..  ++.++.|++.+.+.+...
T Consensus       158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~  209 (512)
T 2ius_A          158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM  209 (512)
T ss_dssp             CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred             CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence            35789999999999999999999999999876  667777888877766543

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.95  E-value=2.3e-06  Score=66.56  Aligned_cols=46  Identities=20%  Similarity=0.310  Sum_probs=36.1

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEEC
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDL   60 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i   60 (181)
                      +.+.. ....+.++.|+|++||||||+.+.|+..+.  .+.+.+++..+
T Consensus        23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~   68 (253)
T 2p5t_B           23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF   68 (253)
T ss_dssp             HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred             HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence            44444 567788999999999999999999998764  35677787554

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.94  E-value=8e-06  Score=66.66  Aligned_cols=120  Identities=13%  Similarity=0.089  Sum_probs=60.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCc--cccHHHHhhcCCCCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF--ATSVRENIRYGDSSV   98 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~--~~tv~enl~~~~~~~   98 (181)
                      ..-.++++|++|+|||||++.++|.. +..     .+.+.....      ..++.+.++...+  -.|..- ........
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~~-----~~~~~~t~~------~~~~~~~~~~~~~~l~Dt~G~-~~~~~~~~  232 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK-PEI-----ASYPFTTRG------INVGQFEDGYFRYQIIDTPGL-LDRPISER  232 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC-CEE-----ECCTTCSSC------EEEEEEEETTEEEEEEECTTT-SSSCSTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC-Ccc-----CCCCCeeec------eeEEEEEecCceEEEEeCCCc-cccchhhh
Confidence            44589999999999999999999875 211     111111110      0133333322100  111100 00110111


Q ss_pred             CHHHHHHHHHH---hcccccccc-CCCCCCCHHHHHHHHHHHHHhcCCcEEEEEe--cCch
Q psy10472         99 SDEQIEEAAKL---ANAHGFISE-FPSGALDNESEKLVQAALESACKGRTVLMIA--HRLS  153 (181)
Q Consensus        99 ~~~~~~~~~~~---~~~~~~~~~-~P~~~LD~~~~~~i~~~l~~~~~~~tii~vt--Hd~~  153 (181)
                      ..-+.......   ....-++.+ .|..++|......++..+.....+..+|+|.  ||+.
T Consensus       233 ~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~  293 (357)
T 2e87_A          233 NEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA  293 (357)
T ss_dssp             CHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred             hHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence            11111111111   111223333 5777889988777777776644478888888  8874

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.94  E-value=5e-06  Score=68.26  Aligned_cols=31  Identities=32%  Similarity=0.523  Sum_probs=27.5

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHh
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLE   43 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~   43 (181)
                      +++..+++.+| +++|+|||||||||+|.+|.
T Consensus        16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            46778888876 99999999999999999986

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.92  E-value=3.2e-05  Score=64.54  Aligned_cols=35  Identities=23%  Similarity=0.410  Sum_probs=30.2

Q ss_pred             eEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc
Q psy10472         16 NLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSS   50 (181)
Q Consensus        16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~   50 (181)
                      .+++.+|++++|+|||||||||||++|+++..|.+
T Consensus        20 ~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~   54 (430)
T 1w1w_A           20 KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS   54 (430)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence            36788899999999999999999999999887754

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.92  E-value=3e-06  Score=70.09  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=31.5

Q ss_pred             eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus       166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            899999999999999999999999999999875

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.91  E-value=4.4e-06  Score=64.74  Aligned_cols=44  Identities=34%  Similarity=0.556  Sum_probs=29.0

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD   59 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~   59 (181)
                      ++++++.++.|  +.|.||+|+|||||+++|++.....  .+.+++.+
T Consensus        37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~   80 (257)
T 1lv7_A           37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD   80 (257)
T ss_dssp             C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred             HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence            44445555554  8999999999999999999876422  35565543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.91  E-value=3.2e-06  Score=67.54  Aligned_cols=25  Identities=36%  Similarity=0.319  Sum_probs=22.7

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +.+++|+|++|+|||||++.|.|..
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Confidence            4489999999999999999999973

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.90  E-value=3.6e-06  Score=69.02  Aligned_cols=38  Identities=32%  Similarity=0.386  Sum_probs=27.5

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceE
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNI   53 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i   53 (181)
                      .++++++|+|      +|+|++|+|||||++.|.+...+..+.+
T Consensus        31 ~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~   68 (361)
T 2qag_A           31 SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVI   68 (361)
T ss_dssp             HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------
T ss_pred             eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence            4677777766      9999999999999999988765554443

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.88  E-value=6e-06  Score=60.59  Aligned_cols=25  Identities=36%  Similarity=0.570  Sum_probs=22.2

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhc
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .+|.+++|+|++||||||+.+.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999999984

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.85  E-value=2.8e-06  Score=65.67  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=25.9

Q ss_pred             CcEEEEECCCCCcHHHHHHHHh---cCCCCCcceE
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLE---RFYDVSSGNI   53 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~---gl~~p~~G~i   53 (181)
                      .-+++|.||+||||||+.+.|+   |+...+.|.+
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~   43 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM   43 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence            3489999999999999999998   5545555655

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.83  E-value=1e-05  Score=62.07  Aligned_cols=27  Identities=26%  Similarity=0.432  Sum_probs=23.5

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhc
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~g   44 (181)
                      +-.+|.+++|+|++||||||+.+.|++
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999999999986

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.83  E-value=1.1e-05  Score=58.71  Aligned_cols=26  Identities=31%  Similarity=0.415  Sum_probs=23.3

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      +.++.|+|++||||||+.+.|+..+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            56899999999999999999998664

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.82  E-value=1e-05  Score=58.30  Aligned_cols=23  Identities=26%  Similarity=0.205  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +++|+|++||||||+.+.|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.79  E-value=1.6e-05  Score=60.89  Aligned_cols=28  Identities=29%  Similarity=0.387  Sum_probs=24.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCcc
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDVSSG   51 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G   51 (181)
                      .++|+|++|+|||||++.|+|...+.++
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~~~~   58 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVFHSG   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence            5899999999999999999998776655

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.75  E-value=1.5e-05  Score=59.06  Aligned_cols=22  Identities=50%  Similarity=0.693  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      +++|.|++||||||+.+.|+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6899999999999999999984

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.75  E-value=3.9e-05  Score=56.28  Aligned_cols=36  Identities=33%  Similarity=0.448  Sum_probs=26.9

Q ss_pred             EEEEECCCCCcHHHHHHHHh-cC----CCCCcc----eEEECCEE
Q psy10472         24 KVAIVGSSGNGKSTIVALLE-RF----YDVSSG----NITISGVD   59 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~-gl----~~p~~G----~i~i~g~~   59 (181)
                      .++|+|++|+|||||++.+. +.    +.|+.|    .+.++|..
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~   66 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS   66 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence            58999999999999997655 43    456666    56666643

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.75  E-value=1.8e-05  Score=58.02  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=22.2

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      |.+++|.|++||||||+.+.|+-.+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999997643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.74  E-value=7.4e-06  Score=68.76  Aligned_cols=41  Identities=24%  Similarity=0.389  Sum_probs=36.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLK   61 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~   61 (181)
                      ++.+++++||+||||||++..|++.+.+..++|.+-+.+..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~  136 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY  136 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence            47899999999999999999999999988889988666643

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.72  E-value=4e-06  Score=62.88  Aligned_cols=26  Identities=35%  Similarity=0.526  Sum_probs=23.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDVS   49 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p~   49 (181)
                      +++|.|++||||||+++.|...+.+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~   27 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAA   27 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            68999999999999999999877543

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.72  E-value=1.7e-05  Score=59.22  Aligned_cols=23  Identities=43%  Similarity=0.608  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .+.|+||||||||||++.|..-.
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            37899999999999999987543

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.72  E-value=1.2e-05  Score=66.15  Aligned_cols=37  Identities=19%  Similarity=0.207  Sum_probs=32.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG   57 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g   57 (181)
                      .+..++|+||+|||||||++.+++...+..+.|.+.+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D   70 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID   70 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            5678999999999999999999988878788887753

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.71  E-value=2.2e-05  Score=62.25  Aligned_cols=37  Identities=16%  Similarity=0.274  Sum_probs=29.6

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG   57 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g   57 (181)
                      -..+.++.|.|||||||||+.+.|+.-++  .|.+.+++
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~   66 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   66 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence            34578999999999999999999987543  35677765

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.70  E-value=1.8e-05  Score=58.16  Aligned_cols=27  Identities=19%  Similarity=0.279  Sum_probs=23.4

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +.+.++.|.|++||||||+.+.|+..+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            457789999999999999999998643

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.70  E-value=2e-05  Score=56.55  Aligned_cols=19  Identities=42%  Similarity=0.665  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHH
Q psy10472         24 KVAIVGSSGNGKSTIVALL   42 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l   42 (181)
                      +++|.||+||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7899999999999999999

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.69  E-value=2.2e-05  Score=59.22  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=21.4

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhc
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~g   44 (181)
                      +-+++|.|++||||||+.+.|+.
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999997

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.68  E-value=2e-05  Score=58.38  Aligned_cols=31  Identities=35%  Similarity=0.523  Sum_probs=25.8

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG   57 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g   57 (181)
                      ..+++|+|++||||||+.+.|+..     |...++.
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~   38 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL   38 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence            357999999999999999999985     6556654

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.67  E-value=3.9e-05  Score=62.97  Aligned_cols=36  Identities=31%  Similarity=0.480  Sum_probs=30.0

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhc-----------CCCCCcceEEECC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLER-----------FYDVSSGNITISG   57 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~g-----------l~~p~~G~i~i~g   57 (181)
                      |-.++|+|.+|+|||||++.|++           -..|..|.+.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            34689999999999999999998           3457778887765

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.65  E-value=2.3e-05  Score=60.97  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +++|+||+|||||||.+.|+..+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            68999999999999999998753

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.64  E-value=3.1e-05  Score=56.73  Aligned_cols=26  Identities=19%  Similarity=0.401  Sum_probs=22.1

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .+..++|+|++||||||+.+.|+..+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            36689999999999999999997543

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.63  E-value=3.6e-05  Score=57.10  Aligned_cols=26  Identities=19%  Similarity=0.216  Sum_probs=24.1

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +|-+++|.|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999876

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.62  E-value=2.8e-05  Score=56.78  Aligned_cols=26  Identities=23%  Similarity=0.268  Sum_probs=22.7

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      ..+.++.|+|++||||||+.+.|+..
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            45778999999999999999999843

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.62  E-value=2.9e-05  Score=56.76  Aligned_cols=29  Identities=21%  Similarity=0.378  Sum_probs=23.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC----CCCcc
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY----DVSSG   51 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~----~p~~G   51 (181)
                      -.++|+|++|+|||||++.+.+-.    .|+.|
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g   49 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQG   49 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence            368999999999999999999863    34555

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.61  E-value=3.7e-05  Score=61.16  Aligned_cols=39  Identities=21%  Similarity=0.382  Sum_probs=31.5

Q ss_pred             EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472         17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG   57 (181)
Q Consensus        17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g   57 (181)
                      +.+.++..+.|.||+|+|||||++++++...  .+.+.+++
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~   82 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG   82 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence            3467889999999999999999999998763  44555554

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.60  E-value=3.5e-05  Score=55.87  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=20.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHhc
Q psy10472         23 QKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3789999999999999999987

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.59  E-value=3.4e-05  Score=56.19  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998654

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.58  E-value=4.2e-05  Score=56.91  Aligned_cols=28  Identities=32%  Similarity=0.579  Sum_probs=24.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDV   48 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p   48 (181)
                      +|.+++|.|++||||||+.+.|+..+..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            4678999999999999999999875543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.56  E-value=4.4e-05  Score=56.22  Aligned_cols=27  Identities=26%  Similarity=0.425  Sum_probs=23.5

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++.+++|+|++||||||+.+.|+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            467799999999999999999998543

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.56  E-value=4.4e-05  Score=56.97  Aligned_cols=26  Identities=31%  Similarity=0.434  Sum_probs=23.3

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      ..|.+++|.|+.||||||+.+.|+..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            46789999999999999999999854

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.53  E-value=5e-05  Score=56.70  Aligned_cols=27  Identities=26%  Similarity=0.249  Sum_probs=23.5

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|-+++|.|+.||||||+.+.|+..
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            356889999999999999999999853

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.53  E-value=3e-05  Score=56.95  Aligned_cols=26  Identities=19%  Similarity=0.137  Sum_probs=22.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYDV   48 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~p   48 (181)
                      .+++|+|++|||||||+..|+..++.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence            47899999999999999999987653

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.52  E-value=4.7e-05  Score=55.74  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +++|.|++||||||+.+.|+..+
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998754

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.51  E-value=4e-05  Score=60.55  Aligned_cols=31  Identities=16%  Similarity=0.249  Sum_probs=27.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCCCCcceE
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYDVSSGNI   53 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~p~~G~i   53 (181)
                      ..+.|.||+|+|||||.++|++...+..+.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~   78 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM   78 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence            5899999999999999999999987776644

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.51  E-value=4.6e-05  Score=59.58  Aligned_cols=24  Identities=38%  Similarity=0.537  Sum_probs=21.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      .++|+|++|||||||++.|+|...
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~~   28 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLRQ   28 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            589999999999999999999753

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.49  E-value=6.1e-05  Score=55.20  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=21.2

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      +.+++|.|++||||||+.+.|+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999998753

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=97.47  E-value=9.6e-05  Score=59.43  Aligned_cols=45  Identities=29%  Similarity=0.279  Sum_probs=34.7

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhc----CCCCCcceEEE
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLER----FYDVSSGNITI   55 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~g----l~~p~~G~i~i   55 (181)
                      ..++...+.+ .|.-++|+|+||+|||||...+.+    +...+...|..
T Consensus       133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~  181 (314)
T 1ko7_A          133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIRE  181 (314)
T ss_dssp             EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEE
T ss_pred             eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEE
Confidence            4677888888 688999999999999999999987    44444444443

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.46  E-value=1.8e-05  Score=58.51  Aligned_cols=28  Identities=29%  Similarity=0.446  Sum_probs=24.1

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++.+.+++|.|++||||||+.+.|+..+
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3457799999999999999999998654

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.46  E-value=0.0001  Score=59.89  Aligned_cols=42  Identities=17%  Similarity=0.056  Sum_probs=32.3

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcC--CCC-----CcceEEECCEE
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERF--YDV-----SSGNITISGVD   59 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl--~~p-----~~G~i~i~g~~   59 (181)
                      -+++|+++.|.||+|||||||+..++..  .++     ..+.++|+...
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            4789999999999999999999998875  322     23456666543

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.44  E-value=6.9e-05  Score=55.66  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +++|.|++||||||+.+.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            79999999999999999998743

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.43  E-value=7.6e-05  Score=54.60  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=22.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      -.++++|++|||||||++.+.+-..
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~~   73 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDSV   73 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3799999999999999999998653

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.43  E-value=5.7e-05  Score=55.05  Aligned_cols=26  Identities=23%  Similarity=0.225  Sum_probs=18.3

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++.++.|.|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            46789999999999999999998543

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.42  E-value=9.6e-05  Score=55.78  Aligned_cols=27  Identities=22%  Similarity=0.484  Sum_probs=22.9

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++|-+++|+|+.||||||+.+.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            356789999999999999999998644

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.41  E-value=6.1e-05  Score=57.61  Aligned_cols=26  Identities=35%  Similarity=0.422  Sum_probs=22.5

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhc
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~g   44 (181)
                      +..|+.+++.||+||||||++.++..
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence            46799999999999999999887653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=97.41  E-value=8.7e-05  Score=54.96  Aligned_cols=22  Identities=45%  Similarity=0.671  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|++|+|||||++.+.+.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999764

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.41  E-value=0.00013  Score=58.61  Aligned_cols=41  Identities=20%  Similarity=0.169  Sum_probs=31.9

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcC-CCC------CcceEEECCE
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERF-YDV------SSGNITISGV   58 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl-~~p------~~G~i~i~g~   58 (181)
                      -+++|+++.|.||+|||||||+..++.. ..|      ..+.++++.+
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e  150 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE  150 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence            4789999999999999999999988764 334      3445666654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.40  E-value=0.00038  Score=49.17  Aligned_cols=29  Identities=24%  Similarity=0.305  Sum_probs=24.5

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDV   48 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p   48 (181)
                      ..+.-+.|.||+|+|||++.+.|......
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~   50 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN   50 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence            45667899999999999999999876543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.40  E-value=0.00019  Score=51.01  Aligned_cols=22  Identities=36%  Similarity=0.578  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999873

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.39  E-value=9.2e-05  Score=55.54  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|.||+||||||+.+.|+.-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.39  E-value=9.2e-05  Score=56.19  Aligned_cols=27  Identities=22%  Similarity=0.482  Sum_probs=22.2

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++.+++|.|++||||||+.+.|+..+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999998543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.38  E-value=9.3e-05  Score=52.52  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|+.|+|||||++.+.+-
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4799999999999999999874

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.37  E-value=0.00011  Score=52.57  Aligned_cols=23  Identities=26%  Similarity=0.573  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|++|+|||||++.+.+-.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            58999999999999999998764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.37  E-value=0.0001  Score=58.08  Aligned_cols=23  Identities=22%  Similarity=0.601  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|++|||||||++.++|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999964

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.37  E-value=8.4e-05  Score=52.82  Aligned_cols=23  Identities=30%  Similarity=0.549  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|++|+|||||++.+.+..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            47999999999999999998754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.36  E-value=9.5e-05  Score=54.88  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=23.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYDV   48 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~p   48 (181)
                      ..+.|.||+|+|||||+++++.....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~   80 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAK   80 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            68999999999999999999986543

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.36  E-value=0.00011  Score=53.84  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998644

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.35  E-value=0.00012  Score=52.20  Aligned_cols=23  Identities=43%  Similarity=0.618  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|++|+|||||++.+.+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            47999999999999999998754

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.35  E-value=0.00013  Score=54.16  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=22.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .+-+++|+|+.||||||+.+.|+..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999864

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.35  E-value=0.00011  Score=51.78  Aligned_cols=23  Identities=39%  Similarity=0.462  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.35  E-value=9.4e-05  Score=53.36  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .+++|.|++||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.34  E-value=0.00011  Score=55.11  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+||+||||||+.+.|+.-+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.34  E-value=0.00012  Score=51.80  Aligned_cols=22  Identities=36%  Similarity=0.513  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999854

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.34  E-value=9.2e-05  Score=55.96  Aligned_cols=26  Identities=35%  Similarity=0.488  Sum_probs=22.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .+.+++|+|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999998543

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.34  E-value=5.4e-05  Score=61.11  Aligned_cols=30  Identities=20%  Similarity=0.336  Sum_probs=26.0

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDVS   49 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~   49 (181)
                      ..+..+.|.||+|+|||||++.+++...+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~   72 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK   72 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            457799999999999999999999877553

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.34  E-value=0.0001  Score=51.97  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999998653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.33  E-value=0.00013  Score=54.20  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=22.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ...+++|.|++||||||+.+.|+..+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            34589999999999999999998543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=97.33  E-value=0.00013  Score=56.74  Aligned_cols=23  Identities=22%  Similarity=0.401  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|++|||||||++.+.|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999874

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.33  E-value=0.00013  Score=52.40  Aligned_cols=22  Identities=36%  Similarity=0.551  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      +++|.|++||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.33  E-value=0.00016  Score=51.89  Aligned_cols=25  Identities=24%  Similarity=0.403  Sum_probs=21.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      +.-.++|+|++|+|||||++.+.+-
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457899999999999999999874

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.32  E-value=0.00012  Score=51.73  Aligned_cols=22  Identities=41%  Similarity=0.480  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|+.|+|||||++.+.+-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999864

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.32  E-value=0.00012  Score=52.61  Aligned_cols=23  Identities=35%  Similarity=0.522  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|++|+|||||++.+.+-.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.32  E-value=0.00013  Score=52.01  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|++|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999865

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.31  E-value=0.00013  Score=51.85  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|+.|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48999999999999999998764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.31  E-value=0.00013  Score=52.44  Aligned_cols=23  Identities=35%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|+.|||||||++.+.+-.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999998753

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.30  E-value=0.00015  Score=52.21  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      +.++|.|+.||||||+.+.|+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.30  E-value=0.00014  Score=51.59  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.29  E-value=0.00014  Score=52.22  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|+.|+|||||++.+.+-.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47999999999999999998653

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=97.29  E-value=0.00013  Score=59.98  Aligned_cols=22  Identities=45%  Similarity=0.549  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|++|+|||||++.|++.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3799999999999999999985

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.29  E-value=0.00012  Score=53.54  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=21.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999875

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.29  E-value=0.00013  Score=53.34  Aligned_cols=24  Identities=33%  Similarity=0.412  Sum_probs=21.2

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      ..+++|.|++||||||+.+.|+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.29  E-value=0.00012  Score=51.94  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47999999999999999998653

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.29  E-value=0.00015  Score=56.40  Aligned_cols=25  Identities=28%  Similarity=0.339  Sum_probs=22.3

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      ++.++.|.|++||||||+.+.|+..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999864

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.28  E-value=0.00012  Score=53.54  Aligned_cols=23  Identities=43%  Similarity=0.560  Sum_probs=20.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .+++|+|++||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.28  E-value=0.0002  Score=50.78  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999998654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.28  E-value=0.00013  Score=53.20  Aligned_cols=23  Identities=39%  Similarity=0.434  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            68999999999999999998864

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.27  E-value=0.00018  Score=54.19  Aligned_cols=27  Identities=11%  Similarity=0.160  Sum_probs=24.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      .+..+.|.||+|+|||||++.++....
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999987654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.26  E-value=0.00014  Score=52.26  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.26  E-value=0.00016  Score=52.70  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      .++|+|++|+|||||++.+.|...
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            479999999999999999998754

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.26  E-value=0.00016  Score=55.94  Aligned_cols=24  Identities=21%  Similarity=0.426  Sum_probs=21.3

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      --+++|.|++||||||+.+.|+..
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999774

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.26  E-value=0.00016  Score=53.95  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=21.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      -+++|+|+.||||||+.+.|+..
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999999875

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.25  E-value=0.00016  Score=52.76  Aligned_cols=22  Identities=41%  Similarity=0.526  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999976

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.25  E-value=0.00018  Score=55.44  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=22.5

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++-+++|.||+||||||+.+.|+-.
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            35668999999999999999999753

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.25  E-value=8.4e-05  Score=59.03  Aligned_cols=26  Identities=27%  Similarity=0.558  Sum_probs=19.3

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++-+++|.||+||||||+.+.|...+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998643

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.24  E-value=0.00015  Score=52.71  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|++|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            47899999999999999998854

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.24  E-value=0.00017  Score=52.23  Aligned_cols=23  Identities=35%  Similarity=0.504  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|+.|+|||||++.+.+-.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            48999999999999999998643

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.24  E-value=0.00018  Score=56.58  Aligned_cols=26  Identities=19%  Similarity=0.396  Sum_probs=23.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++..+.|.||+|+|||||++++++..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            56789999999999999999999865

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=97.24  E-value=0.00017  Score=57.58  Aligned_cols=23  Identities=43%  Similarity=0.424  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +++|+|++|+|||||++.|.|-.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~~   31 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGVK   31 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            69999999999999999999863

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.24  E-value=0.00019  Score=51.49  Aligned_cols=23  Identities=17%  Similarity=0.473  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhCc
Confidence            48999999999999999998653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.23  E-value=0.00017  Score=51.09  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999863

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.23  E-value=0.00017  Score=52.74  Aligned_cols=22  Identities=36%  Similarity=0.679  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|++|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.23  E-value=0.00018  Score=51.28  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=20.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      =.++++|++|+|||||++.+.+-
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999763

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.23  E-value=0.00017  Score=52.29  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++.+.+-
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.21  E-value=0.00019  Score=50.82  Aligned_cols=22  Identities=32%  Similarity=0.437  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|++|+|||||++.+.+-
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.21  E-value=0.0001  Score=53.24  Aligned_cols=24  Identities=33%  Similarity=0.520  Sum_probs=20.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhc
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~g   44 (181)
                      +.=.++++|++|+|||||++.+.+
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            344799999999999999999974

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.20  E-value=0.0002  Score=54.33  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +++|.|++||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999997543

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.20  E-value=0.00019  Score=57.28  Aligned_cols=24  Identities=42%  Similarity=0.378  Sum_probs=21.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      -+++|+|+.|+|||||++.|.|-.
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            389999999999999999999863

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.19  E-value=0.00018  Score=56.73  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.8

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhc
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .-+++|.|++||||||+.+.|..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999984

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.19  E-value=0.0002  Score=52.16  Aligned_cols=22  Identities=36%  Similarity=0.558  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|+.|+|||||++.+.+-
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999865

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.19  E-value=0.0002  Score=51.44  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|++|+|||||++.+.+-.
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999998643

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.19  E-value=0.00021  Score=51.60  Aligned_cols=22  Identities=41%  Similarity=0.480  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            5899999999999999999864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.18  E-value=0.00018  Score=51.48  Aligned_cols=22  Identities=18%  Similarity=0.363  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++.+.+-
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.18  E-value=0.00017  Score=56.45  Aligned_cols=23  Identities=39%  Similarity=0.453  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|++|+|||||++.|.+-.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999988753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.18  E-value=0.00021  Score=51.15  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|+.|+|||||++.+.+-.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.16  E-value=0.00023  Score=51.22  Aligned_cols=23  Identities=30%  Similarity=0.508  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|+.|+|||||++.+.+-.
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.16  E-value=0.00028  Score=50.88  Aligned_cols=27  Identities=26%  Similarity=0.401  Sum_probs=23.2

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ..+..+.|.||.|+|||||++.++..+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999998765

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.15  E-value=0.00023  Score=53.19  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|++|+|||||++.+.+-.
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998865

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.13  E-value=0.00022  Score=51.63  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++.+.+-
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.13  E-value=0.00026  Score=51.36  Aligned_cols=27  Identities=19%  Similarity=0.267  Sum_probs=22.3

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++.=.++++|+.|+|||||++.+.+-.
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            344568999999999999999998743

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.12  E-value=0.00026  Score=52.23  Aligned_cols=23  Identities=35%  Similarity=0.488  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.12  E-value=0.00013  Score=58.32  Aligned_cols=27  Identities=22%  Similarity=0.247  Sum_probs=23.6

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFYDV   48 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~~p   48 (181)
                      +..+.|.||+|+|||||++.++....+
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~   63 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKK   63 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence            467999999999999999999987643

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.12  E-value=0.00026  Score=53.35  Aligned_cols=26  Identities=23%  Similarity=0.595  Sum_probs=22.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +|-+++|+|+.||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999997643

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.12  E-value=0.00026  Score=51.64  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.12  E-value=0.00026  Score=52.10  Aligned_cols=22  Identities=41%  Similarity=0.480  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++.+.+-
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.12  E-value=0.00025  Score=54.79  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|++|||||||++.|.|-.
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999854

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.11  E-value=0.00024  Score=51.68  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|++|+|||||++.+.+-
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999875

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=97.11  E-value=0.00037  Score=50.86  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.11  E-value=0.00025  Score=53.25  Aligned_cols=22  Identities=18%  Similarity=0.376  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|.|+.||||||+.+.|+-.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999763

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=97.10  E-value=0.00025  Score=51.99  Aligned_cols=23  Identities=39%  Similarity=0.563  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998643

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.10  E-value=0.00038  Score=50.26  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5799999999999999999864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.10  E-value=0.00028  Score=55.60  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHhc
Q psy10472         23 QKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++.|+|++||||||+.+.|+.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999986

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=97.10  E-value=0.00029  Score=50.85  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|++|+|||||++.+.+-
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.09  E-value=0.00029  Score=51.35  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999854

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=97.09  E-value=0.00029  Score=51.97  Aligned_cols=22  Identities=32%  Similarity=0.674  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|++|+|||||++.+.|.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999863

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=97.09  E-value=0.00031  Score=51.72  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.09  E-value=0.00031  Score=54.96  Aligned_cols=30  Identities=40%  Similarity=0.484  Sum_probs=23.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCCCCcce
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYDVSSGN   52 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~p~~G~   52 (181)
                      -.++++|.+|+|||||++.|.|-.....|.
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~  129 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA  129 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence            489999999999999999999976654443

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.09  E-value=0.00026  Score=51.78  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5899999999999999999873

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.09  E-value=0.0003  Score=58.53  Aligned_cols=34  Identities=29%  Similarity=0.366  Sum_probs=26.9

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG   57 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g   57 (181)
                      ....++.|+|++||||||+.+.|+..+    |-+.++.
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~  289 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR  289 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEcc
Confidence            457899999999999999999998643    4455554

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.09  E-value=0.00044  Score=52.12  Aligned_cols=34  Identities=32%  Similarity=0.332  Sum_probs=27.7

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++..-+.+ .|..++|+||+|||||||...|+.-
T Consensus        24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            456655555 4788999999999999999999864

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=97.09  E-value=0.00031  Score=54.70  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|++|||||||++.++|-.
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999854

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.08  E-value=0.00014  Score=54.41  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=21.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      -.++|+|++|+|||||++.|.+-.
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.07  E-value=0.00019  Score=55.73  Aligned_cols=29  Identities=31%  Similarity=0.457  Sum_probs=24.6

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      .+++-+++|.|+.||||||+.+.|+..+.
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            45788999999999999999999988763

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.07  E-value=0.00027  Score=52.23  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=21.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      =.++|+|+.|+|||||++.+.+-.
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            368999999999999999998754

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.07  E-value=0.00032  Score=54.69  Aligned_cols=28  Identities=18%  Similarity=0.332  Sum_probs=24.7

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +.++.-+.|.||+|+|||||++.++...
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4567789999999999999999998865

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=97.07  E-value=0.00029  Score=51.68  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999998753

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.07  E-value=0.00035  Score=53.01  Aligned_cols=29  Identities=31%  Similarity=0.308  Sum_probs=24.6

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDV   48 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p   48 (181)
                      -+|.++++.|++||||||+++.|...+..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            35889999999999999999999876543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.06  E-value=0.00028  Score=51.64  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            58999999999999999998754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.06  E-value=0.00032  Score=51.33  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998653

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.06  E-value=0.00031  Score=53.07  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=20.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      -.++|+|++|+|||||++.+.+-
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999875

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.06  E-value=0.00029  Score=54.02  Aligned_cols=29  Identities=21%  Similarity=0.350  Sum_probs=22.0

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      ..+|.++++.|++||||||+.+.|...+.
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35789999999999999999999987653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=97.06  E-value=0.00032  Score=51.31  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999874

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.06  E-value=0.00029  Score=50.81  Aligned_cols=21  Identities=33%  Similarity=0.502  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            589999999999999999984

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=97.05  E-value=0.0003  Score=55.15  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|++|||||||++.+.|..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.05  E-value=0.00029  Score=52.74  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=21.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      -.++|+|+.|||||||++.|++..
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998753

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=97.05  E-value=0.00015  Score=61.37  Aligned_cols=39  Identities=23%  Similarity=0.412  Sum_probs=30.6

Q ss_pred             EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE
Q psy10472         17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI   55 (181)
Q Consensus        17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i   55 (181)
                      +.+-+|+..+|+|++|+|||||++.|+.......+.+.+
T Consensus       146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V  184 (473)
T 1sky_E          146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV  184 (473)
T ss_dssp             SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred             hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence            456789999999999999999999998765443344433

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.05  E-value=0.00033  Score=51.00  Aligned_cols=24  Identities=38%  Similarity=0.444  Sum_probs=20.9

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .=.++++|+.|+|||||++.+.+-
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999853

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=97.04  E-value=0.00024  Score=51.89  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=21.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      =.++|+|+.|+|||||++.+.+-.
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.04  E-value=0.00034  Score=51.22  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|++|+|||||++.+.+-.
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.04  E-value=0.00036  Score=51.35  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      .++++|++|+|||||++.+.+-..
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            689999999999999999988544

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=97.04  E-value=0.00033  Score=51.78  Aligned_cols=22  Identities=32%  Similarity=0.540  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.04  E-value=0.00043  Score=52.73  Aligned_cols=26  Identities=27%  Similarity=0.561  Sum_probs=22.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .+.+++|+|+.||||||+.+.|+..+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999998654

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.03  E-value=0.00031  Score=52.35  Aligned_cols=22  Identities=27%  Similarity=0.572  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|++|+|||||++.+.+-
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999988754

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.03  E-value=0.00038  Score=53.71  Aligned_cols=27  Identities=26%  Similarity=0.397  Sum_probs=24.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      +|.++++.|++||||||+++.|...+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999987654

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.03  E-value=0.00035  Score=56.80  Aligned_cols=25  Identities=20%  Similarity=0.450  Sum_probs=22.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      .+++|+||+|||||||.+.|+..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            3799999999999999999997653

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.03  E-value=0.00036  Score=50.98  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++.+.+-
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.02  E-value=0.00036  Score=50.78  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++.+.+-
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999865

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.02  E-value=0.00037  Score=51.20  Aligned_cols=23  Identities=39%  Similarity=0.498  Sum_probs=20.6

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999999865

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.02  E-value=0.00032  Score=55.55  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=22.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      .++|+|+.|||||||++.|+|...
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCCc
Confidence            699999999999999999999753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.02  E-value=0.00037  Score=51.38  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=21.6

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .=.++|+|+.|+|||||++.+.+-.
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhCC
Confidence            3468999999999999999998754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=97.02  E-value=0.00041  Score=51.70  Aligned_cols=23  Identities=30%  Similarity=0.365  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.01  E-value=0.0003  Score=50.98  Aligned_cols=22  Identities=41%  Similarity=0.478  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|+.|+|||||++.+.+-
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.01  E-value=0.00033  Score=51.78  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.01  E-value=0.00044  Score=55.39  Aligned_cols=34  Identities=15%  Similarity=0.131  Sum_probs=28.4

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhc
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~g   44 (181)
                      -|+.+.--+.+|+++.|.|++|+|||||+..++.
T Consensus        57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~   90 (315)
T 3bh0_A           57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK   90 (315)
T ss_dssp             HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            3555554589999999999999999999888764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.01  E-value=0.00037  Score=51.56  Aligned_cols=24  Identities=29%  Similarity=0.407  Sum_probs=21.0

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .=.++|+|+.|+|||||++.+.+-
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999999864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.00  E-value=0.00047  Score=49.59  Aligned_cols=24  Identities=21%  Similarity=0.241  Sum_probs=20.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      =.++++|+.|+|||||++.+.+-.
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998643

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=97.00  E-value=0.00043  Score=50.88  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=20.5

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .=.++++|+.|+|||||++.+.+-
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.99  E-value=0.00041  Score=50.71  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            5899999999999999888754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.98  E-value=0.00029  Score=50.66  Aligned_cols=22  Identities=18%  Similarity=0.428  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|++|+|||||++.+.+-
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.98  E-value=0.00037  Score=51.74  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999998753

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.98  E-value=0.00037  Score=50.23  Aligned_cols=28  Identities=25%  Similarity=0.283  Sum_probs=23.6

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      ..+..+.|.||+|+|||||++.++....
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3456789999999999999999987654

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.97  E-value=0.00048  Score=52.24  Aligned_cols=27  Identities=22%  Similarity=0.357  Sum_probs=24.1

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      +|.++++-|++||||||+++.|...+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999999987664

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.97  E-value=0.00038  Score=51.95  Aligned_cols=23  Identities=26%  Similarity=0.531  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|++|+|||||++.+.+-.
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998763

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.97  E-value=0.00042  Score=51.81  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|++|+|||||++.+.+-
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.96  E-value=0.00043  Score=55.33  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=24.1

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhc
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~g   44 (181)
                      +++|+++.|.||+|+|||||...++.
T Consensus        95 l~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           95 LESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999999988875

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.96  E-value=0.00062  Score=50.58  Aligned_cols=23  Identities=26%  Similarity=0.244  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|++|+|||||++.+.+-.
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998654

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.96  E-value=0.00047  Score=55.94  Aligned_cols=26  Identities=23%  Similarity=0.488  Sum_probs=23.5

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++.+++|+||+|||||||...|+.-+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            45689999999999999999999866

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.96  E-value=0.00036  Score=52.37  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=21.8

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +-+++|+|++||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            3478999999999999999998754

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.95  E-value=0.0005  Score=55.31  Aligned_cols=25  Identities=32%  Similarity=0.465  Sum_probs=22.1

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +.+++|+||+|||||||...|+--+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4578999999999999999998765

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.94  E-value=0.00053  Score=52.61  Aligned_cols=28  Identities=14%  Similarity=0.240  Sum_probs=23.7

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +....-+.|.||+|+|||||.+.++...
T Consensus        36 ~~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           36 AKVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            3555678999999999999999998754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.94  E-value=0.00029  Score=50.93  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=9.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.94  E-value=0.00052  Score=52.21  Aligned_cols=29  Identities=24%  Similarity=0.306  Sum_probs=26.0

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDV   48 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p   48 (181)
                      .+|.++++-|++||||||+.+.|.-.+..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            36889999999999999999999987765

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.94  E-value=0.0004  Score=54.47  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=22.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      .++|+|+.|+|||||++.|.|...
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~~   51 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCCc
Confidence            799999999999999999998753

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.93  E-value=0.00064  Score=51.58  Aligned_cols=25  Identities=36%  Similarity=0.679  Sum_probs=22.4

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHh
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLE   43 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~   43 (181)
                      +++|+++.|.|++|+|||||..-++
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7899999999999999999986553

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.92  E-value=0.0005  Score=55.46  Aligned_cols=24  Identities=17%  Similarity=0.376  Sum_probs=21.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .+++|+||+|||||||.+.|+..+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999865

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.92  E-value=0.00062  Score=50.75  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      .+.|.||+|+|||||++.++....
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            899999999999999999987653

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.92  E-value=0.0005  Score=52.58  Aligned_cols=25  Identities=40%  Similarity=0.618  Sum_probs=22.7

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      |.+++|.|+.||||||+.+.|+..+
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            5689999999999999999998765

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.92  E-value=0.00037  Score=56.95  Aligned_cols=40  Identities=23%  Similarity=0.291  Sum_probs=30.0

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCCCCC-cceEEECCE
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVS-SGNITISGV   58 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~-~G~i~i~g~   58 (181)
                      +++|+++.|.||+|+|||||...++...... ...++++..
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E  100 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE  100 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            7899999999999999999998877543222 234556553

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.92  E-value=0.00048  Score=53.51  Aligned_cols=23  Identities=35%  Similarity=0.397  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|++|+|||||++.+.|-.
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999854

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.92  E-value=0.00047  Score=53.77  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|++|+|||||++.|.|-.
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999864

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.92  E-value=0.00057  Score=52.26  Aligned_cols=28  Identities=29%  Similarity=0.523  Sum_probs=24.6

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      ..|.++++.|++||||||+.+.|...+.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4688999999999999999999987653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.91  E-value=0.00043  Score=50.87  Aligned_cols=24  Identities=29%  Similarity=0.373  Sum_probs=20.8

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .=.++|+|+.|+|||||++.+.+-
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999999753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.91  E-value=0.00045  Score=51.03  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999874

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.90  E-value=0.00055  Score=52.15  Aligned_cols=29  Identities=21%  Similarity=0.465  Sum_probs=24.1

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .+++..++.|+||.||||+|..+.|+--+
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            35566789999999999999999998543

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.89  E-value=0.0006  Score=51.42  Aligned_cols=22  Identities=32%  Similarity=0.674  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|++|+|||||++.+.|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999874

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.88  E-value=0.0004  Score=56.38  Aligned_cols=46  Identities=13%  Similarity=0.142  Sum_probs=34.5

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEEC
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITIS   56 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~   56 (181)
                      -|+.+.--+.+|+++.|.|++|+|||||+..++.......+.|.+.
T Consensus        35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f   80 (338)
T 4a1f_A           35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF   80 (338)
T ss_dssp             HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            3555544689999999999999999999988876544344555443

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.88  E-value=0.00052  Score=50.16  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999865

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.87  E-value=0.00046  Score=58.01  Aligned_cols=22  Identities=45%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|++|+|||||++.|+|-
T Consensus        25 ~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             EEEEECSSSSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            7999999999999999999984

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.86  E-value=0.00023  Score=57.07  Aligned_cols=37  Identities=14%  Similarity=0.276  Sum_probs=27.5

Q ss_pred             ccceeeEEecCC--cEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         11 ILKDFNLRIPAG--QKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        11 vl~~isl~i~~G--e~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      +++.+.-.+..|  ..+.|.||+|+|||||++++++.+.
T Consensus        45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            344444444555  3489999999999999999998753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.85  E-value=0.00093  Score=49.27  Aligned_cols=33  Identities=27%  Similarity=0.197  Sum_probs=25.8

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhc
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++..-+.+ .|.-+.|.|+||+|||||...+..
T Consensus         6 ~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            6 TWHANFLVI-DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            455555544 478899999999999999988864

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.85  E-value=0.00054  Score=51.42  Aligned_cols=24  Identities=21%  Similarity=0.357  Sum_probs=20.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      -.++|+|++|+|||||++.++.-.
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            478999999999999999988653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.82  E-value=0.00014  Score=56.28  Aligned_cols=21  Identities=29%  Similarity=0.495  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10472         25 VAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~gl   45 (181)
                      +.|.||+|+|||||+++++..
T Consensus        47 vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999874

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.81  E-value=0.00027  Score=52.78  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++.+.+-
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.79  E-value=0.00065  Score=50.26  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhhCC
Confidence            58999999999999999997643

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.78  E-value=0.00076  Score=50.68  Aligned_cols=23  Identities=30%  Similarity=0.592  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.78  E-value=0.00066  Score=50.34  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=19.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHhc
Q psy10472         23 QKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~g   44 (181)
                      =.++++|+.|+|||||++.+.+
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHh
Confidence            4689999999999999988874

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.78  E-value=0.00075  Score=50.54  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++.+.+-
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999765

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.77  E-value=0.00015  Score=60.75  Aligned_cols=43  Identities=26%  Similarity=0.404  Sum_probs=32.1

Q ss_pred             EEecCC--cEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE
Q psy10472         17 LRIPAG--QKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD   59 (181)
Q Consensus        17 l~i~~G--e~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~   59 (181)
                      |.+.++  .+++++|++|+||||+...|++.+.....+|.+-..+
T Consensus        92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D  136 (432)
T 2v3c_C           92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD  136 (432)
T ss_dssp             CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence            444434  5899999999999999999999876544456554433

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.77  E-value=0.00086  Score=53.85  Aligned_cols=25  Identities=16%  Similarity=0.453  Sum_probs=22.1

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ..+++|+||+|||||||...|+.-+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4578999999999999999998764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=96.76  E-value=0.0003  Score=51.76  Aligned_cols=22  Identities=36%  Similarity=0.620  Sum_probs=4.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|++|+|||||++.+.+-
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999998865

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.76  E-value=0.00046  Score=50.24  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=20.3

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhc
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .=.++++|++|+|||||++.+.+
T Consensus        22 ~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           22 KIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            34699999999999999999964

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.75  E-value=0.00064  Score=56.96  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=22.4

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +..+.|.||+|+|||||+++|++..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999999865

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.72  E-value=0.00071  Score=56.86  Aligned_cols=35  Identities=29%  Similarity=0.496  Sum_probs=28.4

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI   55 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i   55 (181)
                      ++.+++++|++||||||++..|+..+....-+|.+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll  133 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV  133 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            46799999999999999999999877654445544

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.68  E-value=0.00087  Score=49.69  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999854

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.67  E-value=0.0011  Score=50.04  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++.|+||.||||+|..+.|+--+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998543

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.67  E-value=0.0012  Score=48.84  Aligned_cols=25  Identities=28%  Similarity=0.505  Sum_probs=20.4

Q ss_pred             CCcEEEEECCCCCcHHHHH-HHHhcC
Q psy10472         21 AGQKVAIVGSSGNGKSTIV-ALLERF   45 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl-~~l~gl   45 (181)
                      +|.++.+.||.||||||++ +.+..+
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4789999999999999997 555443

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.65  E-value=0.00099  Score=55.32  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=21.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .+++|+||+|||||||...|+--+
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHC
Confidence            478999999999999999998654

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=96.64  E-value=0.00055  Score=61.32  Aligned_cols=32  Identities=25%  Similarity=0.439  Sum_probs=26.4

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCc
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSS   50 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~   50 (181)
                      +..|+.++|+||+||||||++.++++...+..
T Consensus       106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~  137 (773)
T 2xau_A          106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPH  137 (773)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGG
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHHHHHhcccc
Confidence            56789999999999999999999876654443

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.63  E-value=0.0014  Score=51.76  Aligned_cols=29  Identities=28%  Similarity=0.399  Sum_probs=22.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCCCCcc
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYDVSSG   51 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~p~~G   51 (181)
                      -.++++|.+|+|||||++.|.|-.....|
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~~~~~~  149 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKNIAKTG  149 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred             ceEEEEecCCCchHHHHHHHhcCceeecC
Confidence            36899999999999999999987644333

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.62  E-value=0.0011  Score=48.80  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .+.|.||.|+|||||++.++..+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999998754

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.61  E-value=0.00092  Score=53.88  Aligned_cols=28  Identities=21%  Similarity=0.405  Sum_probs=24.4

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      ..+..+.|.||+|+|||||++.++....
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999997653

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=96.61  E-value=0.0013  Score=52.32  Aligned_cols=24  Identities=33%  Similarity=0.620  Sum_probs=21.0

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      +-.++|+|++|+|||||++.+.+-
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999998765

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.59  E-value=0.0012  Score=55.33  Aligned_cols=36  Identities=14%  Similarity=0.146  Sum_probs=29.0

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      |+.+.--+++|+++.|.|++|+|||||+..++....
T Consensus       190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a  225 (444)
T 2q6t_A          190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA  225 (444)
T ss_dssp             HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            444443488999999999999999999988876543

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.59  E-value=0.0012  Score=53.35  Aligned_cols=37  Identities=30%  Similarity=0.460  Sum_probs=28.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG   57 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g   57 (181)
                      +|..+.|.||+|+|||||.+.++..+......+.+++
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~  105 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG  105 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence            4568999999999999999999987754434455544

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.58  E-value=0.0014  Score=51.64  Aligned_cols=26  Identities=19%  Similarity=0.442  Sum_probs=22.5

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++..+.|.||+|+|||||.+.++..+
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            45579999999999999999888765

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.58  E-value=0.0014  Score=49.29  Aligned_cols=26  Identities=19%  Similarity=0.321  Sum_probs=23.0

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      |.++++=|+-||||||+++.|.-.+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            56899999999999999999987664

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.56  E-value=0.0011  Score=53.96  Aligned_cols=25  Identities=36%  Similarity=0.530  Sum_probs=22.1

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .-+++|+|+.|+|||||+..|++.+
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999999998765

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=96.54  E-value=0.0019  Score=52.43  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=26.6

Q ss_pred             ceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         13 KDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        13 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      ..+.++++---.++|+|.++||||||++.|++-
T Consensus       149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~  181 (342)
T 1lnz_A          149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA  181 (342)
T ss_dssp             EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred             hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence            345566665556899999999999999999875

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.51  E-value=0.0016  Score=52.26  Aligned_cols=27  Identities=19%  Similarity=0.286  Sum_probs=23.9

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .+..-+.|.||.|+|||||.+.++...
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHc
Confidence            455779999999999999999999865

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.50  E-value=0.0009  Score=56.27  Aligned_cols=32  Identities=28%  Similarity=0.607  Sum_probs=25.9

Q ss_pred             EecCCcE--EEEECCCCCcHHHHHHHHhcCCCCC
Q psy10472         18 RIPAGQK--VAIVGSSGNGKSTIVALLERFYDVS   49 (181)
Q Consensus        18 ~i~~Ge~--~~liG~nGsGKSTLl~~l~gl~~p~   49 (181)
                      .+..|.+  +.|.||+|+|||||.++|+......
T Consensus        44 ~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~   77 (447)
T 3pvs_A           44 AIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD   77 (447)
T ss_dssp             HHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred             HHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            3445554  8999999999999999999887554

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=96.48  E-value=0.0013  Score=54.98  Aligned_cols=22  Identities=45%  Similarity=0.463  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|++|+|||||++.|.|-
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~   26 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGE   26 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999985

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=96.45  E-value=0.001  Score=49.83  Aligned_cols=22  Identities=41%  Similarity=0.614  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHH-HhcC
Q psy10472         24 KVAIVGSSGNGKSTIVAL-LERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~-l~gl   45 (181)
                      .++|+|+.|+|||||++. +.|-
T Consensus        17 ki~v~G~~~~GKSsli~~~~~~~   39 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRHLTGE   39 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTBHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            489999999999999998 5554

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.45  E-value=0.002  Score=51.46  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=23.1

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      +.-+.|.||+|+|||+|+++|+....
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999987543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.44  E-value=0.0016  Score=50.54  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=21.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      +...+.|.||+|+|||||.+.++..
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4457889999999999999999875

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=96.44  E-value=0.0016  Score=53.95  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|.+++|||||++.|.|-.
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47999999999999999999864

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.43  E-value=0.0012  Score=54.14  Aligned_cols=27  Identities=30%  Similarity=0.494  Sum_probs=23.9

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      +++|+++.|.||+|+|||||...++.-
T Consensus        71 l~~G~li~I~G~pGsGKTtlal~la~~   97 (366)
T 1xp8_A           71 IPRGRITEIYGPESGGKTTLALAIVAQ   97 (366)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence            679999999999999999999777643

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.42  E-value=0.0019  Score=51.05  Aligned_cols=27  Identities=30%  Similarity=0.289  Sum_probs=22.5

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++...+.|.||+|+|||+|.++|+..+
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            334567888999999999999999765

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=95.42  E-value=0.00051  Score=50.76  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=19.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      =.++++|+.|+|||||++.+.+-
T Consensus        31 ~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           31 IKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            45899999999999999888653

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.41  E-value=0.0018  Score=50.70  Aligned_cols=25  Identities=24%  Similarity=0.535  Sum_probs=22.2

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +.-+.|.||+|+|||||.+.++..+
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            4568899999999999999998765

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=96.41  E-value=0.0016  Score=53.33  Aligned_cols=25  Identities=32%  Similarity=0.440  Sum_probs=22.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .+..++++|++|+|||||++.|.+.
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhh
Confidence            4567999999999999999999986

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.39  E-value=0.003  Score=48.72  Aligned_cols=28  Identities=29%  Similarity=0.426  Sum_probs=24.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDV   48 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p   48 (181)
                      .+..+.|.||+|+|||+|.+.|......
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~~   55 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSSR   55 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence            4567899999999999999999987654

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=96.39  E-value=0.0011  Score=53.73  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|+.|+|||||++.|.|..
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999964

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.37  E-value=0.0023  Score=51.09  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=22.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +..-+.|.||+|+|||+|.+.++...
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            45579999999999999999998763

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.37  E-value=0.0019  Score=52.15  Aligned_cols=28  Identities=25%  Similarity=0.317  Sum_probs=24.6

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      -+.+|..+.|.||.|+|||||...++.-
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            4778888999999999999999998753

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=96.36  E-value=0.00032  Score=51.73  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|++|+|||||++.+.+-.
T Consensus        35 ki~vvG~~~~GKSsli~~l~~~~   57 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFADDT   57 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSBCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.0021  Score=52.82  Aligned_cols=36  Identities=31%  Similarity=0.386  Sum_probs=28.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC-----------CCcceEEECCEE
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD-----------VSSGNITISGVD   59 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~-----------p~~G~i~i~g~~   59 (181)
                      .++|+|..-+||||||+.|+|-..           |..|.+.+.|..
T Consensus        74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~  120 (376)
T 4a9a_A           74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK  120 (376)
T ss_dssp             EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE
Confidence            589999999999999999998642           334666666644

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.34  E-value=0.0025  Score=51.75  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=23.6

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .+..-+.|.||+|+|||||++.++...
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            346679999999999999999999765

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.33  E-value=0.002  Score=52.21  Aligned_cols=26  Identities=23%  Similarity=0.597  Sum_probs=22.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++.-+.|.||+|+||||+.++|+..+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            45578999999999999999999765

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.32  E-value=0.0023  Score=51.67  Aligned_cols=25  Identities=16%  Similarity=0.193  Sum_probs=22.4

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +..+.|.||.|+|||||++.++...
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            5589999999999999999998764

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=96.30  E-value=0.0018  Score=55.78  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=22.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      -.++|+|..|+|||||++.|.|..
T Consensus        66 ~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           66 PMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc
Confidence            489999999999999999999864

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=96.28  E-value=0.0024  Score=55.94  Aligned_cols=26  Identities=38%  Similarity=0.595  Sum_probs=22.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .|.++.|+|.+||||||+.+.|+..+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            46689999999999999999998654

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.27  E-value=0.0028  Score=50.30  Aligned_cols=33  Identities=18%  Similarity=0.126  Sum_probs=26.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG   57 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g   57 (181)
                      .|..+.|.||.|+|||||++.+....    |.++++.
T Consensus        30 ~~~~v~i~G~~G~GKT~Ll~~~~~~~----~~~~~~~   62 (350)
T 2qen_A           30 NYPLTLLLGIRRVGKSSLLRAFLNER----PGILIDC   62 (350)
T ss_dssp             HCSEEEEECCTTSSHHHHHHHHHHHS----SEEEEEH
T ss_pred             cCCeEEEECCCcCCHHHHHHHHHHHc----CcEEEEe
Confidence            36899999999999999999998654    3566554

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=96.26  E-value=0.0014  Score=55.39  Aligned_cols=25  Identities=40%  Similarity=0.558  Sum_probs=21.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .|=.++|+|+.|+|||||++.|++-
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            3445999999999999999999875

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=96.26  E-value=0.0017  Score=53.11  Aligned_cols=25  Identities=32%  Similarity=0.510  Sum_probs=22.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      ++..++++|.+|+|||||++.|.|-
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHhh
Confidence            4678999999999999999999986

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.26  E-value=0.0025  Score=55.21  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=23.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .|-++.|.|.+||||||+.+.|...+
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L  420 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTL  420 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHh
Confidence            46689999999999999999998764

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=96.23  E-value=0.002  Score=56.06  Aligned_cols=24  Identities=38%  Similarity=0.304  Sum_probs=21.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      -.++|+|+.|+|||||++.|.|-.
T Consensus        39 ~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           39 VVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             cEEEEECCCCCCHHHHHHhHcCCC
Confidence            468999999999999999999864

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.20  E-value=0.0026  Score=50.79  Aligned_cols=24  Identities=21%  Similarity=0.437  Sum_probs=21.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ..+.|.||+|+|||||++.++...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHh
Confidence            358999999999999999998764

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.19  E-value=0.0031  Score=48.41  Aligned_cols=23  Identities=22%  Similarity=0.514  Sum_probs=20.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      -..+|+|+.||||||+.+.|+--
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~   31 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEK   31 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999653

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.19  E-value=0.0033  Score=48.01  Aligned_cols=26  Identities=19%  Similarity=0.011  Sum_probs=20.7

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .+|.++.+.||.|+||||++.-++.-
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r   35 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHR   35 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999977655543

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.17  E-value=0.0028  Score=54.22  Aligned_cols=29  Identities=10%  Similarity=0.056  Sum_probs=25.4

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDV   48 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p   48 (181)
                      +.|-.+.|+|.+||||||+-+.|+..+.-
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            56778999999999999999999877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	181
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	7e-53
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	3e-48
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	4e-46
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	4e-45
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	2e-42
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	8e-39
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	3e-26
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	2e-23
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	9e-21
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	5e-20
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	7e-20
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	2e-19
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	3e-18
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	6e-17
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	2e-16
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	6e-16
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	4e-15
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	5e-15
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	2e-14
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	3e-14
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	4e-14
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	3e-05
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	4e-05

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  167 bits (424), Expect = 7e-53
 Identities = 87/211 (41%), Positives = 114/211 (54%), Gaps = 42/211 (19%)

Query: 7   RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT 66
               ILKD NL I  G+ VA VG SG GKST++ L+ RFYDV+SG I I G ++K     
Sbjct: 29  NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 88

Query: 67  WLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG---- 122
            LR   IGL+ Q+ +LF+ +V+ENI  G  + +DE++ EAAK+ANAH FI   P G    
Sbjct: 89  SLRNQ-IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTE 147

Query: 123 ------------------------------------ALDNESEKLVQAALESACKGRTVL 146
                                               ALD ESE ++Q AL+   K RT L
Sbjct: 148 VGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTL 207

Query: 147 MIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           ++AHRLST+ +AD IVV++ G IVE  G H 
Sbjct: 208 IVAHRLSTITHADKIVVIENGHIVET-GTHR 237

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score =  154 bits (391), Expect = 3e-48
 Identities = 80/211 (37%), Positives = 111/211 (52%), Gaps = 42/211 (19%)

Query: 7   RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT 66
               IL + NL I  G+ + IVG SG+GKST+  L++RFY   +G + I G DL   D  
Sbjct: 14  DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 73

Query: 67  WLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEFPSG---- 122
           WLR   +G++ Q+ VL   S+ +NI   +  +S E++  AAKLA AH FISE   G    
Sbjct: 74  WLRRQ-VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTI 132

Query: 123 ------------------------------------ALDNESEKLVQAALESACKGRTVL 146
                                               ALD ESE ++   +   CKGRTV+
Sbjct: 133 VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVI 192

Query: 147 MIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           +IAHRLSTV+NAD I+V++ G+IVE  G+H+
Sbjct: 193 IIAHRLSTVKNADRIIVMEKGKIVEQ-GKHK 222

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  149 bits (378), Expect = 4e-46
 Identities = 84/212 (39%), Positives = 113/212 (53%), Gaps = 43/212 (20%)

Query: 7   RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT 66
           R    L++ NL+IPAG+ VA+VG SG+GKSTI +L+ RFYD+  G+I + G DL+     
Sbjct: 26  REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLA 85

Query: 67  WLRGNVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSG--- 122
            LR   + L++Q   LF  +V  NI Y      S EQIEEAA++A A  FI++  +G   
Sbjct: 86  SLRNQ-VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDT 144

Query: 123 -------------------------------------ALDNESEKLVQAALESACKGRTV 145
                                                ALD ESE+ +QAAL+   K RT 
Sbjct: 145 IIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTS 204

Query: 146 LMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           L+IAHRLST++ AD IVV++ G IVE  G H 
Sbjct: 205 LVIAHRLSTIEQADEIVVVEDGIIVER-GTHS 235

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (372), Expect = 4e-45
 Identities = 62/215 (28%), Positives = 95/215 (44%), Gaps = 45/215 (20%)

Query: 6   RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG 65
           R    +L+     +  G+  A+VG +G+GKST+ ALL+  Y  + G + + G  L   + 
Sbjct: 24  RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEH 83

Query: 66  TWLRGNVIGLINQEPVLFATSVRENIRYGDS-SVSDEQIEEAAKLANAHGFISEFPSG-- 122
            +L    +  + QEP +F  S++ENI YG +   + E+I  AA  + AH FIS  P G  
Sbjct: 84  RYLHRQ-VAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYD 142

Query: 123 --------------------------------------ALDNESEKLVQAALESACK--G 142
                                                 ALD  S+  V+  L  + +   
Sbjct: 143 TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS 202

Query: 143 RTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           R+VL+I   LS V+ AD I+ L+ G I E  G H+
Sbjct: 203 RSVLLITQHLSLVEQADHILFLEGGAIREG-GTHQ 236

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score =  140 bits (353), Expect = 2e-42
 Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 43/210 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           + IL+D +        +A  G SG GKSTI +LLERFY  ++G ITI G  + ++     
Sbjct: 15  EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENW 74

Query: 69  RGNVIGLINQEPVLFATSVRENIRYG-DSSVSDEQIEEAAKLANAHGFISEFPSG----- 122
           R   IG ++Q+  + A ++REN+ YG +   +DE + +   LA A  F+   P       
Sbjct: 75  RSQ-IGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEV 133

Query: 123 -----------------------------------ALDNESEKLVQAALESACKGRTVLM 147
                                              +LD+ESE +VQ AL+S  KGRT L+
Sbjct: 134 GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLV 193

Query: 148 IAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           IAHRLST+ +AD I  ++ GQI    G+H 
Sbjct: 194 IAHRLSTIVDADKIYFIEKGQITGS-GKHN 222

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  131 bits (331), Expect = 8e-39
 Identities = 40/210 (19%), Positives = 80/210 (38%), Gaps = 57/210 (27%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
             +LK+ NL I  G+ +AI GS+G+GK++++ L+    + S G I  SG           
Sbjct: 49  NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG----------- 97

Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAAKLANAHGFISEF--------- 119
               +   +Q   +   +++ENI +G  S  + + +   K       I++F         
Sbjct: 98  ---RVSFCSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 153

Query: 120 -------------------------------PSGALDNES-EKLVQAALESACKGRTVLM 147
                                          P G LD  + E++ ++ +      +T ++
Sbjct: 154 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 213

Query: 148 IAHRLSTVQNADLIVVLQAGQIVEMLGQHE 177
           +  ++  ++ AD I++L  G      G   
Sbjct: 214 VTSKMEHLRKADKILILHQGSSYFY-GTFS 242

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 97.6 bits (243), Expect = 3e-26
 Identities = 43/214 (20%), Positives = 87/214 (40%), Gaps = 45/214 (21%)

Query: 3   GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62
                +   LK+ NL I  G+ V+I+G SG+GKST++ ++      + G + I  +    
Sbjct: 12  KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71

Query: 63  LDG---TWLRGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKLANA 112
           LD    T +R + IG + Q+  L    +  EN+          +   +E+ + A +    
Sbjct: 72  LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131

Query: 113 HGFISEF---------------------------------PSGALDNESEKLVQAALESA 139
                 F                                 P+GALD+++ + +   L+  
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191

Query: 140 CK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVE 171
            +  G+TV+++ H ++  +  + I+ L+ G++  
Sbjct: 192 NEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 90.8 bits (225), Expect = 2e-23
 Identities = 35/202 (17%), Positives = 71/202 (35%), Gaps = 40/202 (19%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
            T L   +  + AG+ + +VG +G GKST++A +        G+I  +G  L+    T L
Sbjct: 12  STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKL 70

Query: 69  RGNVIGLINQEPVLFATSVRENIRYGDSSVSDEQIEEAA--------------------- 107
             +   L  Q+   FAT V   +       +  ++                         
Sbjct: 71  ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGE 130

Query: 108 --KLANAHGFISEFPSGAL--------------DNESEKLVQAALES-ACKGRTVLMIAH 150
             ++  A   +   P                  D   +  +   L +   +G  ++M +H
Sbjct: 131 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSH 190

Query: 151 RLSTV-QNADLIVVLQAGQIVE 171
            L+   ++A    +L+ G+++ 
Sbjct: 191 DLNHTLRHAHRAWLLKGGKMLA 212

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 84.1 bits (208), Expect = 9e-21
 Identities = 37/215 (17%), Positives = 82/215 (38%), Gaps = 52/215 (24%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDG--- 65
             +LK  +L+  AG  ++I+GSSG+GKST +  +      S G I ++G ++  +     
Sbjct: 15  HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 74

Query: 66  ---------TWLRGNVIGLINQEPVLFAT-SVRENIRYG-------DSSVSDEQIEEAAK 108
                      L    + ++ Q   L++  +V EN+              + E+  +   
Sbjct: 75  QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLA 134

Query: 109 L------------------------------ANAHGFISEFPSGALD-NESEKLVQAALE 137
                                                + + P+ ALD     ++++   +
Sbjct: 135 KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ 194

Query: 138 SACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
            A +G+T++++ H +   ++ +  ++ L  G+I E
Sbjct: 195 LAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 81.7 bits (202), Expect = 5e-20
 Identities = 36/202 (17%), Positives = 75/202 (37%), Gaps = 42/202 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
            T +   NL I  G+ + ++G SG GK+T + ++    + + G I     D+ +L     
Sbjct: 19  FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD- 77

Query: 69  RGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKLAN----AHGFIS 117
               I ++ Q   ++   +V ENI +            D+++  AA+L       + + +
Sbjct: 78  --RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA 135

Query: 118 EF-------------------------PSGALDNESEKLVQAALESACK--GRTVLMIAH 150
           +                          P   LD +    ++A ++   +    T + + H
Sbjct: 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 195

Query: 151 RLSTVQN-ADLIVVLQAGQIVE 171
                    D I V+  GQ+++
Sbjct: 196 DQVEAMTMGDRIAVMNRGQLLQ 217

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 80.4 bits (198), Expect = 7e-20
 Identities = 32/189 (16%), Positives = 68/189 (35%), Gaps = 40/189 (21%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K +L+   + I  G  V   G +G GK+T++  +  +     G I  +GV +  + G   
Sbjct: 14  KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGK-- 71

Query: 69  RGNVIGLINQEPVLFA-TSVRENIRYG----DSSVSDEQIEEAAKLANAHGFISEF---- 119
               I  + +E ++    SV + ++         V+  +I +A +         +     
Sbjct: 72  ----IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELS 127

Query: 120 ------------------------PSGALDNESEKLVQAALESACKGRTVLMIAHRLSTV 155
                                   P  A+D +S+  V  ++    K + +++I+ R   +
Sbjct: 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR-EEL 186

Query: 156 QNADLIVVL 164
              D+   L
Sbjct: 187 SYCDVNENL 195

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 80.3 bits (198), Expect = 2e-19
 Identities = 44/210 (20%), Positives = 81/210 (38%), Gaps = 41/210 (19%)

Query: 3   GNLRRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKH 62
               R    L + +L +PAGQ   ++G+SG GKST++  +      + G++ + G +L  
Sbjct: 12  HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT 71

Query: 63  LDGTWLRG--NVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKLANAH 113
           L  + L      IG+I Q   L ++ +V  N+                ++ E   L    
Sbjct: 72  LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG 131

Query: 114 GFISEFPS-----------------------------GALDNESEKLVQAALESACK--G 142
                +PS                              ALD  + + +   L+   +  G
Sbjct: 132 DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG 191

Query: 143 RTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
            T+L+I H +  V+   D + V+  G+++E
Sbjct: 192 LTILLITHEMDVVKRICDCVAVISNGELIE 221

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 77.3 bits (190), Expect = 3e-18
 Identities = 43/214 (20%), Positives = 73/214 (34%), Gaps = 51/214 (23%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
              L   ++ +  G    I+G +G+GKST++ ++  F     G +     D+ + +   L
Sbjct: 17  FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76

Query: 69  RGNVIGLINQEPVLFAT-SVRENIRYGDSSV----------------SDEQIEEAAKLA- 110
               I    Q P      +V EN+  G+                    +E +E+A K+  
Sbjct: 77  YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136

Query: 111 -------------------------------NAHGFISEFPSGALD-NESEKLVQAALES 138
                                          N    + + P   +    +  +    LE 
Sbjct: 137 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 196

Query: 139 ACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 171
             KG T L+I HRL  V N  D + V+  GQI+ 
Sbjct: 197 KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 230

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 73.6 bits (180), Expect = 6e-17
 Identities = 40/203 (19%), Positives = 79/203 (38%), Gaps = 41/203 (20%)

Query: 10  TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLR 69
             L + N+ I  G++  I+G SG GK+T + ++      S+G +      +       + 
Sbjct: 19  VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78

Query: 70  GNV--IGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEF- 119
                IG++ Q   L+   +  ENI +             +++EE AK+ + H  ++ F 
Sbjct: 79  PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138

Query: 120 ----------------------------PSGALDNESEKLVQAALES--ACKGRTVLMIA 149
                                       P   LD       +A ++   +  G T+L+++
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198

Query: 150 HRLSTVQN-ADLIVVLQAGQIVE 171
           H  + +   AD + VL  G++V+
Sbjct: 199 HDPADIFAIADRVGVLVKGKLVQ 221

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 71.9 bits (176), Expect = 2e-16
 Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 42/202 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
             + KD NL I  G+ V  VG SG GKST++ ++     ++SG++ I    +        
Sbjct: 13  VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE- 71

Query: 69  RGNVIGLINQEPVLF-ATSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISEFP- 120
               +G++ Q   L+   SV EN+ +G         V ++++ + A++      +   P 
Sbjct: 72  --RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK 129

Query: 121 --SG----------ALDNESEKLVQA------------------ALESACKGRTVLMIAH 150
             SG           L  E    +                    +      GRT++ + H
Sbjct: 130 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 189

Query: 151 RLSTVQN-ADLIVVLQAGQIVE 171
                   AD IVVL AG++ +
Sbjct: 190 DQVEAMTLADKIVVLDAGRVAQ 211

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 69.6 bits (169), Expect = 6e-16
 Identities = 20/159 (12%), Positives = 37/159 (23%), Gaps = 12/159 (7%)

Query: 24  KVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLF 83
           K+ I G  G GK+T+V  +       +       V             +I    ++ +  
Sbjct: 2   KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGF-RIITTEGKKKIFS 60

Query: 84  ATSVRENIRYGDSSVSDEQIE-----------EAAKLANAHGFISEFPSGALDNESEKLV 132
           +         G   V+ +  E             AK       I +          +   
Sbjct: 61  SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRD 120

Query: 133 QAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVE 171
                       V+              I  L    ++E
Sbjct: 121 LVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIE 159

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 68.9 bits (168), Expect = 4e-15
 Identities = 41/205 (20%), Positives = 69/205 (33%), Gaps = 43/205 (20%)

Query: 7   RLKTILKDFNLRI---PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHL 63
           R +  L +F L +          ++G +G GKS  + L+        G + ++G D+  L
Sbjct: 6   RAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL 65

Query: 64  DGTWLRGNVIGLINQEPVLFAT-SVRENIRYGDSSVSDEQ----IEEAAKLANAHGFISE 118
                    IG + Q+  LF   SV  NI YG  +V   +    + E A+       +  
Sbjct: 66  PPERRG---IGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDR 122

Query: 119 FPSGALDNESEKLVQAALESACK-------------------------------GRTVLM 147
            P+     E +++  A                                         +L 
Sbjct: 123 KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182

Query: 148 IAHRLSTVQN-ADLIVVLQAGQIVE 171
           + H L      AD + V+  G+IVE
Sbjct: 183 VTHDLIEAAMLADEVAVMLNGRIVE 207

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 68.1 bits (166), Expect = 5e-15
 Identities = 45/201 (22%), Positives = 81/201 (40%), Gaps = 40/201 (19%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
           K ILK  +  I  G+   ++G +G GK+T + ++      SSG +T+ G ++        
Sbjct: 15  KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 74

Query: 69  RGNVIGLINQEPVLFAT-SVRENIRYG------DSSVSDEQIEEA--------------- 106
           +   I  + +E   +      E +R+        SS  +E +E A               
Sbjct: 75  KL--ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS 132

Query: 107 --------------AKLANAHGFISEFPSGALDNESEKLVQAALESACK-GRTVLMIAHR 151
                         A + N    I + P+  LD  + + V+  L+ A + G T+L+ +H 
Sbjct: 133 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN 192

Query: 152 LSTVQN-ADLIVVLQAGQIVE 171
           +  V+   D I ++  G IVE
Sbjct: 193 MLEVEFLCDRIALIHNGTIVE 213

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 66.9 bits (163), Expect = 2e-14
 Identities = 35/205 (17%), Positives = 72/205 (35%), Gaps = 42/205 (20%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
            T +++ +L +  G+ + ++G SG GK+T + ++    + S G I I    +   +    
Sbjct: 16  VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIF 75

Query: 69  R---GNVIGLINQEPVLF-ATSVRENIRYG------DSSVSDEQIEEAAKLANAHGFISE 118
                  I ++ Q   L+   +V +NI +            D+++ E A+L      ++ 
Sbjct: 76  VPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR 135

Query: 119 FP---SG----------ALDNESEKLVQAALESA------------------CKGRTVLM 147
            P   SG          A+  + +  +     S                     G T + 
Sbjct: 136 KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY 195

Query: 148 IAHRLSTVQN-ADLIVVLQAGQIVE 171
           + H         D I V+  G + +
Sbjct: 196 VTHDQVEAMTMGDRIAVMNRGVLQQ 220

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 66.2 bits (161), Expect = 3e-14
 Identities = 38/199 (19%), Positives = 76/199 (38%), Gaps = 39/199 (19%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
              L + +L++ +G+   I+G +G GK+  + L+  F+   SG I + G   K +     
Sbjct: 13  NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG---KDVTDLSP 69

Query: 69  RGNVIGLINQEPVLF-ATSVRENIRYG---DSSVSDEQIEEAAKLANAHGFISEF----- 119
             + I  + Q   LF   +V++N+ +G         +++ + A+       +        
Sbjct: 70  EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLS 129

Query: 120 ------------------------PSGALDNESEKLVQAALES--ACKGRTVLMIAHRLS 153
                                   P  ALD  +++  +  L         TVL I H  +
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189

Query: 154 TVQN-ADLIVVLQAGQIVE 171
             +  AD I V+  G++++
Sbjct: 190 EARIMADRIAVVMDGKLIQ 208

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 66.1 bits (161), Expect = 4e-14
 Identities = 38/201 (18%), Positives = 69/201 (34%), Gaps = 38/201 (18%)

Query: 9   KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWL 68
              +K  +L++P GQ V ++G++G GK+T ++ +        G I  +G D+ +     +
Sbjct: 19  IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78

Query: 69  RGNVIGLINQEPVLFAT-SVRENIRYG-----DSSVSDEQIEEAAKLAN-----AHGFIS 117
               I L+ +   +F   +V EN+  G     D       +E    L             
Sbjct: 79  NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGG 138

Query: 118 EF-------------------------PSGALD-NESEKLVQAALESACKGRTVLMIAHR 151
                                      PS  L      ++ +   +   +G T+L++   
Sbjct: 139 TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN 198

Query: 152 LSTVQN-ADLIVVLQAGQIVE 171
                  A    VL+ GQIV 
Sbjct: 199 ALGALKVAHYGYVLETGQIVL 219

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	181
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.62
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.61
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.21
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.1
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.96
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.35
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	98.24
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.22
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.2
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.19
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.19
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.17
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.1
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.08
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.04
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.02
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.02
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.99
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.99
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.96
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.93
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.9
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.88
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.86
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.86
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.85
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.81
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.81
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.79
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.76
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.76
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.74
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.72
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.68
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.67
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.67
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.66
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.66
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.63
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.62
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.62
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.62
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.61
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.61
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.6
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.59
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.59
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.59
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.57
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.57
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.56
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.56
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.54
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.54
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.54
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.52
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.51
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.5
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.5
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.49
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.48
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.48
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.48
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.42
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.42
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.42
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.4
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.4
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.39
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.37
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.37
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.35
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.31
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.31
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.3
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.3
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.3
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.29
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.28
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.28
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.27
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.26
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.24
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.24
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.23
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	97.22
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.21
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.21
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.21
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.2
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	97.2
d1okkd2	207	GTPase domain of the signal recognition particle r	97.2
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.2
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.19
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.18
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.18
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.14
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.14
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.13
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.12
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.12
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.11
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.11
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.11
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.09
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.09
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.08
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	97.07
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.07
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.06
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.05
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.05
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.04
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.03
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.01
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.0
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.0
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.99
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.99
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.98
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.97
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.96
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.96
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.95
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.95
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.94
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.93
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.93
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.92
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.92
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.92
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.91
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.91
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.9
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.9
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.9
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.89
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.89
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.88
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.87
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.87
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.87
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.87
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.85
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.84
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.84
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.82
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.81
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.8
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.79
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.79
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.78
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.78
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.78
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.78
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.77
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.75
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.75
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.73
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.71
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.69
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.69
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.68
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.68
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.67
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	96.66
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.66
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.64
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.64
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.63
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.62
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.6
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.59
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.57
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.54
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.53
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.52
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.48
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.46
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.45
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.42
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	96.37
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.32
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.31
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.24
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.17
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	96.16
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.12
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.11
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	96.07
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.05
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.0
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.97
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	95.94
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.86
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.78
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.77
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.76
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.75
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	95.72
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.55
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.54
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.5
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.48
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.41
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.34
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.31
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	95.24
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.14
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.07
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.04
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.98
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.96
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.88
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.82
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.82
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.72
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.71
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.63
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	94.55
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	94.19
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.06
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.0
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	93.81
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.76
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	93.64
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.62
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	93.56
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	93.44
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.18
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.74
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.7
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	92.66
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.63
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	92.54
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	92.44
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	92.31
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	92.26
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	92.25
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.09
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	92.07
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	91.92
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	91.63
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	91.14
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	91.05
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	90.4
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	90.37
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	88.27
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	87.96
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	87.4
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	85.9
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	84.74
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	83.9
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	83.76
d1khba1	363	Cytosolic phosphoenolpyruvate carboxykinase (GTP-h	82.37
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	81.14

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-48  Score=304.74  Aligned_cols=171  Identities=44%  Similarity=0.711  Sum_probs=150.7

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCcccc
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATS   86 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~t   86 (181)
                      ..+++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.|+|+++..++...+|++ |+||||++.+|++|
T Consensus        14 ~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~-i~~v~Q~~~lf~~T   92 (241)
T d2pmka1          14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ-VGVVLQDNVLLNRS   92 (241)
T ss_dssp             TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH-EEEECSSCCCTTSB
T ss_pred             CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhce-EEEEecccccCCcc
Confidence            34569999999999999999999999999999999999999999999999999999998888865 99999999999999


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCH
Q psy10472         87 VRENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDN  126 (181)
Q Consensus        87 v~enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~  126 (181)
                      |+|||.++......+++.++++.+++..                                        ++.|+||++||+
T Consensus        93 i~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~  172 (241)
T d2pmka1          93 IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDY  172 (241)
T ss_dssp             HHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCH
T ss_pred             ccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCH
Confidence            9999999876666777666665543321                                        356779999999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        127 ESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       127 ~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      .+++.+++.++++.+++|+|+|||+++.+..||+|++|++|+|++ .++++++
T Consensus       173 ~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~-~G~~~el  224 (241)
T d2pmka1         173 ESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVE-QGKHKEL  224 (241)
T ss_dssp             HHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEE-EECHHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence            999999999998878999999999999998899999999999998 5665543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=6.6e-48  Score=302.40  Aligned_cols=170  Identities=49%  Similarity=0.754  Sum_probs=152.1

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV   87 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv   87 (181)
                      .+++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++...+|++ |+||||++.+|++||
T Consensus        30 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~-i~~v~Q~~~lf~~Ti  108 (255)
T d2hyda1          30 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ-IGLVQQDNILFSDTV  108 (255)
T ss_dssp             SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT-EEEECSSCCCCSSBH
T ss_pred             CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhhe-eeeeeccccCCCCCH
Confidence            3579999999999999999999999999999999999999999999999999999988888876 999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472         88 RENIRYGDSSVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE  127 (181)
Q Consensus        88 ~enl~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~  127 (181)
                      +|||.++......+++.++++.+++.+                                        ++.|+||++||+.
T Consensus       109 ~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~  188 (255)
T d2hyda1         109 KENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE  188 (255)
T ss_dssp             HHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHH
T ss_pred             HHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence            999999876667778788877665432                                        2456699999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      ++..+++.++.+.+++|+|+|||+++.+..||+|++|++|+|++ .++++++
T Consensus       189 t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~-~G~~~eL  239 (255)
T d2hyda1         189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE-TGTHREL  239 (255)
T ss_dssp             HHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEE-EECHHHH
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence            99999999998888999999999999998899999999999998 5665543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.4e-47  Score=297.12  Aligned_cols=167  Identities=23%  Similarity=0.351  Sum_probs=137.0

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +...+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...++.  ++ .||||||++.+|+. 
T Consensus        17 g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r-~ig~v~Q~~~l~~~l   93 (239)
T d1v43a3          17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DR-NISMVFQSYAVWPHM   93 (239)
T ss_dssp             TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GG-TEEEEEC------CC
T ss_pred             CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cc-eEEEEeechhhcccc
Confidence            446799999999999999999999999999999999999999999999999999887654  33 49999999999975 


Q ss_pred             cHHHHhhcCCCC--CC----HHHHHHHHHHhccccc-----------------------------cccCCCCCCCHHHHH
Q psy10472         86 SVRENIRYGDSS--VS----DEQIEEAAKLANAHGF-----------------------------ISEFPSGALDNESEK  130 (181)
Q Consensus        86 tv~enl~~~~~~--~~----~~~~~~~~~~~~~~~~-----------------------------~~~~P~~~LD~~~~~  130 (181)
                      ||+||+.|+...  .+    ++++.++++.+++.++                             +.|+||++||+.++.
T Consensus        94 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~  173 (239)
T d1v43a3          94 TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRV  173 (239)
T ss_dssp             CHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHH
Confidence            999999987532  22    2345667777776653                             456799999999999


Q ss_pred             HHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        131 LVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       131 ~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      .++++++++. + |+|+|+||||++++.. |||+++|++|+|++ .++++
T Consensus       174 ~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~-~G~~~  222 (239)
T d1v43a3         174 AMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ-IGSPT  222 (239)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHH
T ss_pred             HHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHH
Confidence            9999999874 4 9999999999999966 99999999999998 45443

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=8e-48  Score=300.21  Aligned_cols=169  Identities=40%  Similarity=0.645  Sum_probs=147.3

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++...+|++ ||||||++.+|++|++
T Consensus        15 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~ti~   93 (242)
T d1mv5a_          15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQ-IGFVSQDSAIMAGTIR   93 (242)
T ss_dssp             SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTT-CCEECCSSCCCCEEHH
T ss_pred             CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhh-eEEEccccccCCcchh
Confidence            579999999999999999999999999999999999999999999999999999887777765 9999999999999999


Q ss_pred             HHhhcCCC-CCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCHH
Q psy10472         89 ENIRYGDS-SVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDNE  127 (181)
Q Consensus        89 enl~~~~~-~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~~  127 (181)
                      ||+.++.. ....+.++++++.+++..                                        ++.|+||++||+.
T Consensus        94 eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~  173 (242)
T d1mv5a_          94 ENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSE  173 (242)
T ss_dssp             HHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSS
T ss_pred             hheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHH
Confidence            99988743 345555555555443221                                        3557799999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        128 SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       128 ~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      ++..+++.++++.+++|+|+|||+++.+..||||++|++|+|++ .++++++
T Consensus       174 ~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~-~G~~~eL  224 (242)
T d1mv5a_         174 SESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITG-SGKHNEL  224 (242)
T ss_dssp             SCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECC-CSCHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence            99999999998878999999999999988899999999999998 5776554

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.4e-48  Score=297.11  Aligned_cols=168  Identities=26%  Similarity=0.420  Sum_probs=128.3

Q ss_pred             cccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc
Q psy10472          6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         6 ~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~   85 (181)
                      .+..++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..  ++ .||||||++.+|+.
T Consensus        10 yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r-~ig~v~Q~~~l~~~   86 (232)
T d2awna2          10 WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ER-GVGMVFQSYALYPH   86 (232)
T ss_dssp             ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GT-CEEEECSSCCC---
T ss_pred             ECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hc-eeeeeccccccccc
Confidence            3456799999999999999999999999999999999999999999999999999876643  33 49999999999976


Q ss_pred             -cHHHHhhcCCCCC------CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         86 -SVRENIRYGDSSV------SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        86 -tv~enl~~~~~~~------~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                       ||+||+.|+....      .++++.++++.+++.+                             ++.|+||++||+.++
T Consensus        87 ~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~  166 (232)
T d2awna2          87 LSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR  166 (232)
T ss_dssp             ------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHH
T ss_pred             hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence             9999999874321      1345667777766544                             355779999999999


Q ss_pred             HHHHHHHHHh-c-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        130 KLVQAALESA-C-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       130 ~~i~~~l~~~-~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      ..+++.++++ + .|+|+|+||||++++.. |||+++|++|++++ .++++
T Consensus       167 ~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~-~G~~~  216 (232)
T d2awna2         167 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPL  216 (232)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHH
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EeCHH
Confidence            9999999886 3 49999999999999976 99999999999998 45444

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.3e-46  Score=295.10  Aligned_cols=170  Identities=48%  Similarity=0.705  Sum_probs=149.1

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV   87 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv   87 (181)
                      ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..++...+|++ |+|+||++.+|+.|+
T Consensus        27 ~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~l~~~ti  105 (253)
T d3b60a1          27 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ-VALVSQNVHLFNDTV  105 (253)
T ss_dssp             SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT-EEEECSSCCCCSSBH
T ss_pred             CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhhe-EEEEeeccccCCcch
Confidence            3569999999999999999999999999999999999999999999999999999998888876 999999999999999


Q ss_pred             HHHhhcCCC-CCCHHHHHHHHHHhcccc----------------------------------------ccccCCCCCCCH
Q psy10472         88 RENIRYGDS-SVSDEQIEEAAKLANAHG----------------------------------------FISEFPSGALDN  126 (181)
Q Consensus        88 ~enl~~~~~-~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~P~~~LD~  126 (181)
                      ++|+.++.. ..+.++++++++.+++.+                                        ++.|+||++||+
T Consensus       106 ~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~  185 (253)
T d3b60a1         106 ANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT  185 (253)
T ss_dssp             HHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCH
T ss_pred             hhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCH
Confidence            999999853 346666776665443221                                        355679999999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        127 ESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       127 ~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      .++..+++.|+.+.+++|+|+||||++.+..||+|++|++|+|++ .++++++
T Consensus       186 ~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~-~G~~~eL  237 (253)
T d3b60a1         186 ESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVE-RGTHSEL  237 (253)
T ss_dssp             HHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEE-EECHHHH
T ss_pred             HHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence            999999999998878999999999999988899999999999999 5665543

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=3.1e-47  Score=295.48  Aligned_cols=169  Identities=25%  Similarity=0.407  Sum_probs=142.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh--hccCcEEEEccCCCCccc-
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW--LRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~--~r~~~i~~v~q~~~l~~~-   85 (181)
                      ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...  .+++.||||||++.+|+. 
T Consensus        18 ~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~l   97 (242)
T d1oxxk2          18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL   97 (242)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS
T ss_pred             EEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccc
Confidence            56899999999999999999999999999999999999999999999999987654321  223459999999999986 


Q ss_pred             cHHHHhhcCCCC--CC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHH
Q psy10472         86 SVRENIRYGDSS--VS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEK  130 (181)
Q Consensus        86 tv~enl~~~~~~--~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~  130 (181)
                      ||+||++|+...  .+    ++++.++++.+++.+                             ++.|+||++||+.++.
T Consensus        98 tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~  177 (242)
T d1oxxk2          98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD  177 (242)
T ss_dssp             CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHH
T ss_pred             cHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHH
Confidence            999999987432  22    345677888777655                             3456799999999999


Q ss_pred             HHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472        131 LVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       131 ~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      .+++.++++. + |.|+|+||||++++.. ||||++|++|+|++. +++++
T Consensus       178 ~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~-g~~~e  227 (242)
T d1oxxk2         178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV-GKPED  227 (242)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHHH
T ss_pred             HHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence            9999998874 4 9999999999999865 999999999999984 55443

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-47  Score=296.43  Aligned_cols=166  Identities=25%  Similarity=0.432  Sum_probs=141.9

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCccc-
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~~-   85 (181)
                      .+|+||||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...+...   +|+ .||||||++.+|+. 
T Consensus        19 ~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr-~ig~VfQ~~~l~~~~   97 (240)
T d3dhwc1          19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARR-QIGMIFQHFNLLSSR   97 (240)
T ss_dssp             EEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHH-HEEECCSSCCCCTTS
T ss_pred             EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhc-cccccccccccCCCc
Confidence            5899999999999999999999999999999999999999999999999998877543   344 49999999999975 


Q ss_pred             cHHHHhhcCCC----CC--CHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHH
Q psy10472         86 SVRENIRYGDS----SV--SDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEK  130 (181)
Q Consensus        86 tv~enl~~~~~----~~--~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~  130 (181)
                      ||+||+.++..    ..  .++++.++++.+++.+                             ++.|+||++||+.++.
T Consensus        98 tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~  177 (240)
T d3dhwc1          98 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR  177 (240)
T ss_dssp             BHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHH
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhh
Confidence            99999988521    11  1355677888877655                             3556799999999999


Q ss_pred             HHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        131 LVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       131 ~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      .++++|+++. + |+|+|+||||++++.. |||+++|++|+|++. ++++
T Consensus       178 ~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~-G~~~  226 (240)
T d3dhwc1         178 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ-DTVS  226 (240)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEE-EETT
T ss_pred             HHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE-CCHH
Confidence            9999999864 4 9999999999999976 999999999999984 4443

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=8.1e-47  Score=291.13  Aligned_cols=165  Identities=25%  Similarity=0.427  Sum_probs=142.6

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHH
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVR   88 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~   88 (181)
                      .+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.+.+..  ++ .||||||++.+|+. ||+
T Consensus        14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r-~ig~v~Q~~~l~~~~tV~   90 (229)
T d3d31a2          14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KH-DIAFVYQNYSLFPHMNVK   90 (229)
T ss_dssp             CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HH-TCEEECTTCCCCTTSCHH
T ss_pred             EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hh-cceeeccccccCccccHH
Confidence            489999999999999999999999999999999999999999999999999877654  33 49999999999986 999


Q ss_pred             HHhhcCC---CCCCHHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHH
Q psy10472         89 ENIRYGD---SSVSDEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAAL  136 (181)
Q Consensus        89 enl~~~~---~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l  136 (181)
                      ||+.|+.   .....+++.++++.+++.+                             ++.|+||++||+.++..+++++
T Consensus        91 enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l  170 (229)
T d3d31a2          91 KNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML  170 (229)
T ss_dssp             HHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHH
Confidence            9998863   2234667778887776654                             3556799999999999999999


Q ss_pred             HHh-c-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472        137 ESA-C-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       137 ~~~-~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      +++ + .|.|||+||||++++.. ||||++|++|++++ .+++++
T Consensus       171 ~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~-~g~~~e  214 (229)
T d3d31a2         171 SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ-VGKPEE  214 (229)
T ss_dssp             HHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE-EECHHH
T ss_pred             HHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHH
Confidence            886 3 48999999999999976 99999999999998 455444

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-46  Score=295.13  Aligned_cols=169  Identities=33%  Similarity=0.532  Sum_probs=142.0

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVR   88 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~   88 (181)
                      ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..++...+|++ |+||||+|.+|+.||+
T Consensus        27 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~tv~  105 (251)
T d1jj7a_          27 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ-VAAVGQEPQVFGRSLQ  105 (251)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH-EEEECSSCCCCSSBHH
T ss_pred             CEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHH-hhhccccccccCcchh
Confidence            469999999999999999999999999999999999999999999999999998888877765 9999999999999999


Q ss_pred             HHhhcCCC-CCCHHHHHHHHHHhcc----------------------------------------ccccccCCCCCCCHH
Q psy10472         89 ENIRYGDS-SVSDEQIEEAAKLANA----------------------------------------HGFISEFPSGALDNE  127 (181)
Q Consensus        89 enl~~~~~-~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~P~~~LD~~  127 (181)
                      ||+.++.. ........++.+..++                                        .-++.|+||++||+.
T Consensus       106 eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~  185 (251)
T d1jj7a_         106 ENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN  185 (251)
T ss_dssp             HHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred             hhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChh
Confidence            99999743 2333333322221110                                        013567799999999


Q ss_pred             HHHHHHHHHHHhcC--CcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        128 SEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       128 ~~~~i~~~l~~~~~--~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      ++..+++.|.++.+  ++|+|+||||++.+..||||++|++|+|++ .++++++
T Consensus       186 ~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~-~Gt~~eL  238 (251)
T d1jj7a_         186 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIRE-GGTHQQL  238 (251)
T ss_dssp             HHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEE-EECHHHH
T ss_pred             hHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence            99999999988643  899999999999988899999999999999 5666544

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=2e-47  Score=296.64  Aligned_cols=172  Identities=22%  Similarity=0.361  Sum_probs=143.1

Q ss_pred             cccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCC
Q psy10472          6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVL   82 (181)
Q Consensus         6 ~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l   82 (181)
                      .+..++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...   .+++.||||||++.+
T Consensus        13 yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L   92 (240)
T d1g2912          13 FGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL   92 (240)
T ss_dssp             ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred             ECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhh
Confidence            34567999999999999999999999999999999999999999999999999986654322   233459999999999


Q ss_pred             ccc-cHHHHhhcCC--CCCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCH
Q psy10472         83 FAT-SVRENIRYGD--SSVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDN  126 (181)
Q Consensus        83 ~~~-tv~enl~~~~--~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~  126 (181)
                      |+. ||+||+.++.  ...+    ++++.++++.+++.+                             ++.|+||++||+
T Consensus        93 ~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~  172 (240)
T d1g2912          93 YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA  172 (240)
T ss_dssp             CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCH
T ss_pred             cchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCH
Confidence            986 9999999862  1122    234667777776655                             355679999999


Q ss_pred             HHHHHHHHHHHHhc-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472        127 ESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       127 ~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      .++..++++++++. + |.|+|+||||++++.. ||||++|++|++++ .+++++
T Consensus       173 ~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~-~G~~~e  226 (240)
T d1g2912         173 KLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ-VGSPDE  226 (240)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHH
T ss_pred             HHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHH
Confidence            99999999998864 4 9999999999999976 99999999999998 455544

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.3e-46  Score=290.58  Aligned_cols=163  Identities=27%  Similarity=0.466  Sum_probs=136.7

Q ss_pred             cccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhh---hccCcEEEEccCCCCccc-
Q psy10472         10 TILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTW---LRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus        10 ~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~---~r~~~i~~v~q~~~l~~~-   85 (181)
                      .+|+||||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++..++..+   +|++.||||||++.+|+. 
T Consensus        19 ~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~   98 (230)
T d1l2ta_          19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL   98 (230)
T ss_dssp             EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS
T ss_pred             EEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCc
Confidence            4899999999999999999999999999999999999999999999999999887654   344469999999999975 


Q ss_pred             cHHHHhhcCC-----CCCC-HH---HHHHHHHHhcccc------------------------------ccccCCCCCCCH
Q psy10472         86 SVRENIRYGD-----SSVS-DE---QIEEAAKLANAHG------------------------------FISEFPSGALDN  126 (181)
Q Consensus        86 tv~enl~~~~-----~~~~-~~---~~~~~~~~~~~~~------------------------------~~~~~P~~~LD~  126 (181)
                      ||+||+.++.     .... .+   ++.+.++.+++.+                              ++.|+||++||+
T Consensus        99 tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~  178 (230)
T d1l2ta_          99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS  178 (230)
T ss_dssp             CHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred             cHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCH
Confidence            9999998742     1122 22   3344555555432                              355679999999


Q ss_pred             HHHHHHHHHHHHhc-C-CcEEEEEecCchhhhcCCeEEEEeCCeEEee
Q psy10472        127 ESEKLVQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVEM  172 (181)
Q Consensus       127 ~~~~~i~~~l~~~~-~-~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~  172 (181)
                      .++..++++++++. + |+|+|+||||++++..||||++|++|+|+++
T Consensus       179 ~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~  226 (230)
T d1l2ta_         179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE  226 (230)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEe
Confidence            99999999999863 4 8999999999998877999999999999984

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=3.1e-45  Score=285.17  Aligned_cols=171  Identities=23%  Similarity=0.333  Sum_probs=140.7

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +...+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+....++..++|+||++.+|+. 
T Consensus        17 g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~l   96 (240)
T d1ji0a_          17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL   96 (240)
T ss_dssp             TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTS
T ss_pred             CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcc
Confidence            3457999999999999999999999999999999999999999999999999999887666555569999999999985 


Q ss_pred             cHHHHhhcCCCC---CC--HHHHHHHHHHh-ccc-----------------------------cccccCCCCCCCHHHHH
Q psy10472         86 SVRENIRYGDSS---VS--DEQIEEAAKLA-NAH-----------------------------GFISEFPSGALDNESEK  130 (181)
Q Consensus        86 tv~enl~~~~~~---~~--~~~~~~~~~~~-~~~-----------------------------~~~~~~P~~~LD~~~~~  130 (181)
                      ||+||+.++...   ..  .+.++++++.+ ++.                             -++.|+||++||+.++.
T Consensus        97 tv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~  176 (240)
T d1ji0a_          97 TVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVS  176 (240)
T ss_dssp             BHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHH
T ss_pred             cHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHH
Confidence            999999875321   11  22233343332 111                             14668899999999999


Q ss_pred             HHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472        131 LVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       131 ~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      .+++++++++ +|+|||++|||++++.. ||||++|++|++++ .+++++
T Consensus       177 ~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~-~g~~~e  225 (240)
T d1ji0a_         177 EVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL-EGKASE  225 (240)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EEEHHH
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHH
Confidence            9999999874 59999999999999866 99999999999998 454443

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.5e-45  Score=289.27  Aligned_cols=169  Identities=22%  Similarity=0.311  Sum_probs=141.3

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-   85 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-   85 (181)
                      +..++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...++...++..|+|+||++.+|+. 
T Consensus        15 g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~l   94 (254)
T d1g6ha_          15 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM   94 (254)
T ss_dssp             TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGS
T ss_pred             CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCC
Confidence            4467999999999999999999999999999999999999999999999999999888776655569999999999875 


Q ss_pred             cHHHHhhcCCC----------------CCCH---HHHHHHHHHhcccc-----------------------------ccc
Q psy10472         86 SVRENIRYGDS----------------SVSD---EQIEEAAKLANAHG-----------------------------FIS  117 (181)
Q Consensus        86 tv~enl~~~~~----------------~~~~---~~~~~~~~~~~~~~-----------------------------~~~  117 (181)
                      ||+||+.++..                ....   +++.++++.+++..                             ++.
T Consensus        95 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llil  174 (254)
T d1g6ha_          95 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVM  174 (254)
T ss_dssp             BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             eeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchhh
Confidence            99999987521                1112   23344555444332                             356


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCc
Q psy10472        118 EFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQH  176 (181)
Q Consensus       118 ~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~  176 (181)
                      |+||++||+.++..+++++++++ +|+|||+||||++++.. ||||++|++|++++. +++
T Consensus       175 DEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~-g~~  234 (254)
T d1g6ha_         175 DEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE-GRG  234 (254)
T ss_dssp             ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE-EES
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEE-ecH
Confidence            77999999999999999998864 69999999999999865 999999999999984 443

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=5.5e-46  Score=292.03  Aligned_cols=169  Identities=25%  Similarity=0.386  Sum_probs=138.8

Q ss_pred             ccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChh-------------hhccCcE
Q psy10472          7 RLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGT-------------WLRGNVI   73 (181)
Q Consensus         7 ~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~-------------~~r~~~i   73 (181)
                      +..++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+..             .+|+ +|
T Consensus        13 g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~-~i   91 (258)
T d1b0ua_          13 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT-RL   91 (258)
T ss_dssp             TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHH-HE
T ss_pred             CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhc-ce
Confidence            456799999999999999999999999999999999999999999999999998643221             2333 49


Q ss_pred             EEEccCCCCccc-cHHHHhhcCC---CCCC----HHHHHHHHHHhcccc------------------------------c
Q psy10472         74 GLINQEPVLFAT-SVRENIRYGD---SSVS----DEQIEEAAKLANAHG------------------------------F  115 (181)
Q Consensus        74 ~~v~q~~~l~~~-tv~enl~~~~---~~~~----~~~~~~~~~~~~~~~------------------------------~  115 (181)
                      |||||++.+|+. ||.||+.++.   ....    .+++.++++.+++..                              +
T Consensus        92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~ll  171 (258)
T d1b0ua_          92 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVL  171 (258)
T ss_dssp             EEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred             EEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEE
Confidence            999999999975 9999998751   1222    234555666655432                              3


Q ss_pred             cccCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        116 ISEFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       116 ~~~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      +.|+||++||+.++..+++++++++ +|+|||+||||++++.. ||||++|++|+|++ .++++
T Consensus       172 ilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~-~g~~~  234 (258)
T d1b0ua_         172 LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGDPE  234 (258)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHH
T ss_pred             EeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHH
Confidence            5677999999999999999998865 58999999999999976 99999999999998 45443

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.9e-44  Score=279.20  Aligned_cols=159  Identities=26%  Similarity=0.436  Sum_probs=135.9

Q ss_pred             eeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cHHHHhh
Q psy10472         14 DFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SVRENIR   92 (181)
Q Consensus        14 ~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv~enl~   92 (181)
                      ||||+++ +|+++|+||||||||||+|+|+|+++|++|+|.++|+++.++++.  ++ .||||||++.+|+. ||+||+.
T Consensus        17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r-~ig~v~Q~~~l~~~ltV~enl~   92 (240)
T d2onka1          17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RR-GIGFVPQDYALFPHLSVYRNIA   92 (240)
T ss_dssp             EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TS-CCBCCCSSCCCCTTSCHHHHHH
T ss_pred             EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--Hc-CceeeccchhhcccchhhHhhh
Confidence            7888885 689999999999999999999999999999999999999887654  33 49999999999985 9999999


Q ss_pred             cCCCCCC----HHHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHHHHHHHHHHHh
Q psy10472         93 YGDSSVS----DEQIEEAAKLANAHG-----------------------------FISEFPSGALDNESEKLVQAALESA  139 (181)
Q Consensus        93 ~~~~~~~----~~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~~~i~~~l~~~  139 (181)
                      |+.+...    ++++.++++.+++.+                             ++.|+||++||+.++..+++.++++
T Consensus        93 ~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l  172 (240)
T d2onka1          93 YGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV  172 (240)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHH
T ss_pred             hhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHH
Confidence            9865433    244667777776655                             3456799999999999999999886


Q ss_pred             c-C-CcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCch
Q psy10472        140 C-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHE  177 (181)
Q Consensus       140 ~-~-~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~  177 (181)
                      . + |+|+|+||||++++.. |||+++|++|++++ .++++
T Consensus       173 ~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~-~G~~~  212 (240)
T d2onka1         173 QREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE-KGKLK  212 (240)
T ss_dssp             HHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHH
T ss_pred             HHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-EecHH
Confidence            4 3 8999999999999976 99999999999998 45544

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.8e-44  Score=279.34  Aligned_cols=170  Identities=27%  Similarity=0.398  Sum_probs=140.3

Q ss_pred             cccccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc
Q psy10472          6 RRLKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT   85 (181)
Q Consensus         6 ~~~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~   85 (181)
                      .+.+++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ ...++. +||+||++.+|+.
T Consensus        12 yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~-~~~~~~-i~~vpq~~~~~~~   89 (238)
T d1vpla_          12 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP-HEVRKL-ISYLPEEAGAYRN   89 (238)
T ss_dssp             ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCH-HHHHTT-EEEECTTCCCCTT
T ss_pred             ECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccCh-HHHHhh-EeEeeeccccCCC
Confidence            35578999999999999999999999999999999999999999999999999987643 445554 9999999999875


Q ss_pred             -cHHHHhhcCC--CCCCH----HHHHHHHHHhcccc-----------------------------ccccCCCCCCCHHHH
Q psy10472         86 -SVRENIRYGD--SSVSD----EQIEEAAKLANAHG-----------------------------FISEFPSGALDNESE  129 (181)
Q Consensus        86 -tv~enl~~~~--~~~~~----~~~~~~~~~~~~~~-----------------------------~~~~~P~~~LD~~~~  129 (181)
                       |+.||+.|..  .....    +.++.+++.+++..                             ++.|+||++||+.++
T Consensus        90 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~  169 (238)
T d1vpla_          90 MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA  169 (238)
T ss_dssp             SBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred             ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHH
Confidence             9999997642  11222    23455555554433                             356779999999999


Q ss_pred             HHHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchh
Q psy10472        130 KLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHEN  178 (181)
Q Consensus       130 ~~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~  178 (181)
                      +.+++++++++ +|+|||++|||++++.. ||||++|++|++++ .+++++
T Consensus       170 ~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~-~g~~~e  219 (238)
T d1vpla_         170 REVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE-TGTVEE  219 (238)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE-EEEHHH
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHH
Confidence            99999998864 69999999999999976 99999999999998 455544

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.6e-41  Score=266.48  Aligned_cols=156  Identities=25%  Similarity=0.401  Sum_probs=129.1

Q ss_pred             cccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccH
Q psy10472          8 LKTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSV   87 (181)
Q Consensus         8 ~~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv   87 (181)
                      .++||+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|             + ++|+||++++|++||
T Consensus        48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~-i~~v~Q~~~l~~~tv  113 (281)
T d1r0wa_          48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R-VSFCSQFSWIMPGTI  113 (281)
T ss_dssp             TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C-EEEECSSCCCCSEEH
T ss_pred             CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------E-EEEEeccccccCcee
Confidence            36799999999999999999999999999999999999999999999987             2 899999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHhcc----------------------------------------ccccccCCCCCCCHH
Q psy10472         88 RENIRYGDSSVSDEQIEEAAKLANA----------------------------------------HGFISEFPSGALDNE  127 (181)
Q Consensus        88 ~enl~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~P~~~LD~~  127 (181)
                      +||+.++.. ......+.+++.+.+                                        .-++.|+||++||+.
T Consensus       114 ~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~  192 (281)
T d1r0wa_         114 KENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF  192 (281)
T ss_dssp             HHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHH
T ss_pred             ecccccccc-ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHH
Confidence            999998743 334444444332211                                        114567799999999


Q ss_pred             HHHHHHHHH-HHhcCCcEEEEEecCchhhhcCCeEEEEeCCeEEeecCCchhh
Q psy10472        128 SEKLVQAAL-ESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       128 ~~~~i~~~l-~~~~~~~tii~vtHd~~~~~~~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      +++.+++.+ ....+++|+|+|||+++.+..||||++|++|++++ .|+++++
T Consensus       193 ~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~-~Gt~~eL  244 (281)
T d1r0wa_         193 TEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYF-YGTFSEL  244 (281)
T ss_dssp             HHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEE-EECHHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence            999988764 44456899999999999888899999999999998 5665443

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.7e-39  Score=247.23  Aligned_cols=168  Identities=23%  Similarity=0.369  Sum_probs=134.4

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCC-ccccH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVL-FATSV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l-~~~tv   87 (181)
                      ..+|++|||+|++||+++|+||||||||||+++|+|+. |++|+|.++|+++..++...++.. .+|++|+... |..++
T Consensus        12 ~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v   89 (231)
T d1l7vc_          12 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALH-RAYLSQQQTPPFATPV   89 (231)
T ss_dssp             TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHH-EEEECSCCCCCSSCBH
T ss_pred             CceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhh-ceeeeccccCCccccH
Confidence            45799999999999999999999999999999999976 689999999999988777666544 8999998764 45589


Q ss_pred             HHHhhcCCCC-CCHHHHHHHHHHhc------------------------------------cccccccCCCCCCCHHHHH
Q psy10472         88 RENIRYGDSS-VSDEQIEEAAKLAN------------------------------------AHGFISEFPSGALDNESEK  130 (181)
Q Consensus        88 ~enl~~~~~~-~~~~~~~~~~~~~~------------------------------------~~~~~~~~P~~~LD~~~~~  130 (181)
                      .+++.++... ...+.+.++++.++                                    ..-++.|+||++||+.++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~  169 (231)
T d1l7vc_          90 WHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS  169 (231)
T ss_dssp             HHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHH
T ss_pred             HHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHH
Confidence            9988765322 12233333332211                                    1245778999999999999


Q ss_pred             HHHHHHHHhc-CCcEEEEEecCchhhhc-CCeEEEEeCCeEEeecCCchhh
Q psy10472        131 LVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMLGQHENT  179 (181)
Q Consensus       131 ~i~~~l~~~~-~~~tii~vtHd~~~~~~-~d~v~~l~~G~i~~~~~~~~~~  179 (181)
                      .++++++.++ +|+|||+||||++++.. |||+++|++|++++ .+++++.
T Consensus       170 ~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~-~G~~~ev  219 (231)
T d1l7vc_         170 ALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA-SGRREEV  219 (231)
T ss_dssp             HHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECC-CSBHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE-ECCHHHH
Confidence            9999999864 69999999999998865 99999999999998 5655443

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=9.5e-35  Score=220.22  Aligned_cols=149  Identities=21%  Similarity=0.351  Sum_probs=118.5

Q ss_pred             ccccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccc-cH
Q psy10472          9 KTILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFAT-SV   87 (181)
Q Consensus         9 ~~vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~-tv   87 (181)
                      +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..     .+. .++|+||++.++.. |+
T Consensus        14 ~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~-~i~~~~~~~~~~~~~t~   87 (200)
T d1sgwa_          14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKG-KIFFLPEEIIVPRKISV   87 (200)
T ss_dssp             SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGG-GEEEECSSCCCCTTSBH
T ss_pred             CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcC-cEEEEeecccCCCCcCH
Confidence            579999999999999999999999999999999999999999999999998753     333 49999999988765 99


Q ss_pred             HHHhhcC----CCCCCHHHHHHHHHHhcccc----------------------------ccccCCCCCCCHHHHHHHHHH
Q psy10472         88 RENIRYG----DSSVSDEQIEEAAKLANAHG----------------------------FISEFPSGALDNESEKLVQAA  135 (181)
Q Consensus        88 ~enl~~~----~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~P~~~LD~~~~~~i~~~  135 (181)
                      .+|+.+.    .....++++.++++.+++.+                            ++.|+||++||+.++..+++.
T Consensus        88 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~  167 (200)
T d1sgwa_          88 EDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS  167 (200)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHH
T ss_pred             HHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHH
Confidence            9998653    12344556666666554322                            456789999999999999998


Q ss_pred             HHHhc-C-CcEEEEEecCchhhhcCCeEEEEeC
Q psy10472        136 LESAC-K-GRTVLMIAHRLSTVQNADLIVVLQA  166 (181)
Q Consensus       136 l~~~~-~-~~tii~vtHd~~~~~~~d~v~~l~~  166 (181)
                      +.+.. + +.++|.++|++   ..||++.+|++
T Consensus       168 l~~~~~~~~~~ii~~~~~l---~~~D~~~~l~~  197 (200)
T d1sgwa_         168 ILEILKEKGIVIISSREEL---SYCDVNENLHK  197 (200)
T ss_dssp             HHHHHHHHSEEEEEESSCC---TTSSEEEEGGG
T ss_pred             HHHHHhCCCEEEEEEechh---hhcchhhheee
Confidence            88754 3 55666666654   46999988854

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.61  E-value=1.3e-17  Score=121.43  Aligned_cols=141  Identities=15%  Similarity=0.088  Sum_probs=78.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEcc--C---CCCccccHHHHhhcCCCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQ--E---PVLFATSVRENIRYGDSSV   98 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q--~---~~l~~~tv~enl~~~~~~~   98 (181)
                      .++|+||||||||||+++|+|.++|..|.+.+.+.+.....    ++  .++...  .   ..++..+......+.....
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK----KR--TGFRIITTEGKKKIFSSKFFTSKKLVGSYGV   75 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC----------C--CEEEEEETTCCEEEEEETTCCCSSEETTEEE
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHH----Hh--hhhhhhhhhHHHHHHhhhhhhhhhhhhhhhc
Confidence            48999999999999999999999999999999876543221    11  222111  1   1111112212222111111


Q ss_pred             CHHHH--------HHHHHH---hccccccccCCCCCCCHHHHHHHHHHHHH-hc-CCcEEEEEecCchhhhcCCeEEEEe
Q psy10472         99 SDEQI--------EEAAKL---ANAHGFISEFPSGALDNESEKLVQAALES-AC-KGRTVLMIAHRLSTVQNADLIVVLQ  165 (181)
Q Consensus        99 ~~~~~--------~~~~~~---~~~~~~~~~~P~~~LD~~~~~~i~~~l~~-~~-~~~tii~vtHd~~~~~~~d~v~~l~  165 (181)
                      ..+..        ..++..   ....-++.|+|...  ......+.+.+.+ +. .+.++|+++|+......|+++..+.
T Consensus        76 ~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i~~~~  153 (178)
T d1ye8a1          76 NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP  153 (178)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCT
T ss_pred             CcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCcc--chhhHHHHHHHHHHhccCCCEEEEEEccHHHHHhhceEEEEe
Confidence            11111        111111   12223455666332  2222334444443 34 3789999999987666799999999


Q ss_pred             CCeEEee
Q psy10472        166 AGQIVEM  172 (181)
Q Consensus       166 ~G~i~~~  172 (181)
                      +|++++.
T Consensus       154 ~~~i~~v  160 (178)
T d1ye8a1         154 GAVLIEL  160 (178)
T ss_dssp             TCEEEEC
T ss_pred             CCEEEEE
Confidence            9999873

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.10  E-value=1.2e-10  Score=90.85  Aligned_cols=50  Identities=20%  Similarity=0.292  Sum_probs=44.0

Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhhhcCCeEEE--EeCC
Q psy10472        118 EFPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVV--LQAG  167 (181)
Q Consensus       118 ~~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~~~~d~v~~--l~~G  167 (181)
                      ++|.++|+|...+.+.+.|+...++.-+|++||++..+..+|+++.  +++|
T Consensus       248 DEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~g  299 (308)
T d1e69a_         248 DEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNG  299 (308)
T ss_dssp             ESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSS
T ss_pred             hhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEeCC
Confidence            4588999999999999999988778899999999999988999866  5566

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=7e-10  Score=89.46  Aligned_cols=47  Identities=15%  Similarity=0.180  Sum_probs=40.9

Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCchhhhcCCeEEEE
Q psy10472        118 EFPSGALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL  164 (181)
Q Consensus       118 ~~P~~~LD~~~~~~i~~~l~~~~-~~~tii~vtHd~~~~~~~d~v~~l  164 (181)
                      |+|+++||+..+..+.++|.... .+.-+|++||++..+..||+.+.+
T Consensus       361 DE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V  408 (427)
T d1w1wa_         361 DEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV  408 (427)
T ss_dssp             SSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred             eCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence            55889999999999999998764 467799999999999999998765

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.35  E-value=2.4e-06  Score=63.82  Aligned_cols=118  Identities=14%  Similarity=0.177  Sum_probs=64.9

Q ss_pred             eEEecCCcEEEEECCCCCcHHHHHHHHh--------cCCCCCc-ceEEECCEECCCCChhhhccCcEEEEccCCCCcc-c
Q psy10472         16 NLRIPAGQKVAIVGSSGNGKSTIVALLE--------RFYDVSS-GNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-T   85 (181)
Q Consensus        16 sl~i~~Ge~~~liG~nGsGKSTLl~~l~--------gl~~p~~-G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-~   85 (181)
                      |+++. ++++.|.|||.+||||+||.++        |.+-|.+ .++.+.+                       .+|. .
T Consensus        30 di~~~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d-----------------------~I~~~~   85 (224)
T d1ewqa2          30 DLEMA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFD-----------------------GIYTRI   85 (224)
T ss_dssp             EEEES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCS-----------------------EEEEEC
T ss_pred             eEEeC-CcEEEEECCCccccchhhhhhHHHHHHHhccceeecCceEEeecc-----------------------eEEEEE
Confidence            44554 4589999999999999999876        3333322 2221111                       1111 1


Q ss_pred             cHHHHhhcCCCCC--CHHHHHHHHHHhcccc-ccccCCCCCCCHHHHHHHHH-HHHHhc-CCcEEEEEecCchhhhc
Q psy10472         86 SVRENIRYGDSSV--SDEQIEEAAKLANAHG-FISEFPSGALDNESEKLVQA-ALESAC-KGRTVLMIAHRLSTVQN  157 (181)
Q Consensus        86 tv~enl~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~P~~~LD~~~~~~i~~-~l~~~~-~~~tii~vtHd~~~~~~  157 (181)
                      ...|++.-+....  .-.++..+++.+.-.. .+-|++..+=++.....+.. +++.+. .+..++++||..+....
T Consensus        86 ~~~d~~~~~~StF~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l  162 (224)
T d1ewqa2          86 GASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL  162 (224)
T ss_dssp             CC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred             CCCccccCCccHHHHhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhhh
Confidence            2233333221111  1234455565544332 45688899999876544333 344443 37889999999877654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=1.5e-08  Score=72.87  Aligned_cols=34  Identities=21%  Similarity=0.196  Sum_probs=29.0

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .+.+.++++.+| +++|+|||||||||+|.+|.-.
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~   47 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA   47 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred             CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence            356778888776 9999999999999999999744

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.22  E-value=2.6e-07  Score=66.56  Aligned_cols=26  Identities=38%  Similarity=0.492  Sum_probs=23.7

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      |.+++|+||||||||||++.|...++
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            88999999999999999999987654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.20  E-value=4.5e-07  Score=67.86  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=26.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI   55 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i   55 (181)
                      +|+.++++|+||+|||||++.|.+-..-..|.|.-
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~  128 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE  128 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence            58999999999999999999999987777787753

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=1.3e-05  Score=60.02  Aligned_cols=117  Identities=15%  Similarity=0.123  Sum_probs=61.9

Q ss_pred             eEEecC-CcEEEEECCCCCcHHHHHHHHhc--------CCCCCc-ceEEECCEECCCCChhhhccCcEEEEccCCCCcc-
Q psy10472         16 NLRIPA-GQKVAIVGSSGNGKSTIVALLER--------FYDVSS-GNITISGVDLKHLDGTWLRGNVIGLINQEPVLFA-   84 (181)
Q Consensus        16 sl~i~~-Ge~~~liG~nGsGKSTLl~~l~g--------l~~p~~-G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~-   84 (181)
                      ++++.+ +.++.|.|||.+||||+||.++-        ..-|.+ .++.+                       -..+|. 
T Consensus        34 di~l~~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~-----------------------~d~I~~~   90 (234)
T d1wb9a2          34 PLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGP-----------------------IDRIFTR   90 (234)
T ss_dssp             EEEECSSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECC-----------------------CCEEEEE
T ss_pred             eEEECCCceEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceeccc-----------------------chhheeE
Confidence            344544 46899999999999999999862        222221 11111                       111221 


Q ss_pred             ccHHHHhhcCCCCCC--HHHHHHHHHHhcccc-ccccCCCCCCCHHHHHHH-HHHHHHh-cC-CcEEEEEecCchhh
Q psy10472         85 TSVRENIRYGDSSVS--DEQIEEAAKLANAHG-FISEFPSGALDNESEKLV-QAALESA-CK-GRTVLMIAHRLSTV  155 (181)
Q Consensus        85 ~tv~enl~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~P~~~LD~~~~~~i-~~~l~~~-~~-~~tii~vtHd~~~~  155 (181)
                      ....|++.-+.....  -.++..+++...-.. .+-|++..+=++.....+ ...++.+ .+ +..+|++||..+..
T Consensus        91 ~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~  167 (234)
T d1wb9a2          91 VGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT  167 (234)
T ss_dssp             EC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             EccCcccccchhHHHHHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence            133444443322221  233455555544332 457888999888766554 4445554 33 57889999987654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=2.7e-07  Score=64.80  Aligned_cols=25  Identities=28%  Similarity=0.276  Sum_probs=21.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDV   48 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p   48 (181)
                      +++|+|++|||||||++.|...+..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~   28 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCA   28 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            7899999999999999999865543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.9e-07  Score=65.07  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=27.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCcceEEEC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITIS   56 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~   56 (181)
                      .+.|.||+|+|||||++.++..+....+.+.+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~   35 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGF   35 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence            588999999999999999999987776665443

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.08  E-value=8.9e-07  Score=62.37  Aligned_cols=35  Identities=29%  Similarity=0.493  Sum_probs=27.4

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG   57 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g   57 (181)
                      .|++++|.||+||||||+.+.|+..+...  -+.+++
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~   37 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS   37 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCC--EEEecH
Confidence            58899999999999999999998765221  345554

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.04  E-value=1.2e-06  Score=61.63  Aligned_cols=27  Identities=22%  Similarity=0.334  Sum_probs=23.9

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .+|-++.|+|++||||||+.+.|+-.+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999998554

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=1.4e-06  Score=61.25  Aligned_cols=27  Identities=22%  Similarity=0.358  Sum_probs=24.1

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ..+.++.|+||+||||||+.+.|+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998765

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.02  E-value=4.5e-07  Score=68.09  Aligned_cols=35  Identities=20%  Similarity=0.365  Sum_probs=22.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEE
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITI   55 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i   55 (181)
                      +|..++++|+||+|||||++.|.+-..-..|.|.-
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~  130 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  130 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence            57899999999999999999999987777787753

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.99  E-value=1e-06  Score=62.26  Aligned_cols=35  Identities=20%  Similarity=0.232  Sum_probs=26.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCCCC---cceEEECC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYDVS---SGNITISG   57 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~p~---~G~i~i~g   57 (181)
                      .+++|+|++|||||||+.-|...+...   -|.|..++
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~   39 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG   39 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence            378999999999999999888776543   34444444

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=1.9e-06  Score=63.45  Aligned_cols=26  Identities=27%  Similarity=0.410  Sum_probs=23.1

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +|.+++|+||||||||||.+.|.--.
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            58899999999999999999887553

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.96  E-value=1.8e-06  Score=60.83  Aligned_cols=24  Identities=38%  Similarity=0.641  Sum_probs=21.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ..++|.||+|||||||.+.|+..+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999865

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.93  E-value=2.8e-06  Score=59.65  Aligned_cols=27  Identities=26%  Similarity=0.626  Sum_probs=23.8

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++|-.++|.||+||||||+.+.|+--+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            457789999999999999999998765

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.90  E-value=3.1e-06  Score=59.31  Aligned_cols=26  Identities=31%  Similarity=0.415  Sum_probs=23.5

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      ..++.|.|++||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999999874

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.88  E-value=3.3e-06  Score=58.14  Aligned_cols=32  Identities=25%  Similarity=0.308  Sum_probs=23.6

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG   57 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g   57 (181)
                      +++.|.||+|||||||.+.|..-.   .|.+.++.
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~   34 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR   34 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC---CCCEEech
Confidence            478899999999999999875422   34555543

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.86  E-value=2.6e-06  Score=60.16  Aligned_cols=29  Identities=21%  Similarity=0.242  Sum_probs=23.9

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCCCCCc
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFYDVSS   50 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~~p~~   50 (181)
                      +.+++|.|++||||||+.+.|+-.+....
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~   29 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG   29 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            36899999999999999999987654433

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.86  E-value=3.4e-06  Score=60.33  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      ++||.||+|||||||.+.|.-.+.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            688999999999999999986543

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=3.9e-06  Score=57.84  Aligned_cols=23  Identities=39%  Similarity=0.517  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .+.|+||+||||||+.+.|+-.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999998765

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.81  E-value=4.5e-06  Score=58.17  Aligned_cols=32  Identities=34%  Similarity=0.420  Sum_probs=25.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG   57 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g   57 (181)
                      .++.|.||+||||||+.+.|+..+.   +.+.+++
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~   34 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG   34 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence            4789999999999999999997763   3444444

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.81  E-value=4.7e-06  Score=58.24  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+||+||||||+.+.|+--
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3679999999999999999754

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=3.2e-06  Score=60.42  Aligned_cols=26  Identities=38%  Similarity=0.595  Sum_probs=23.1

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .|-++.|+|++||||||+.+.|+-.+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            47799999999999999999998654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.76  E-value=1.5e-05  Score=56.66  Aligned_cols=23  Identities=43%  Similarity=0.459  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|+.|+|||||++.|+|-.
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTST
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999998753

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.76  E-value=5.5e-06  Score=59.69  Aligned_cols=23  Identities=30%  Similarity=0.405  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|++|+|||||++.|.|.-
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            49999999999999999999853

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.74  E-value=7e-06  Score=59.09  Aligned_cols=22  Identities=45%  Similarity=0.644  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHhcCC
Q psy10472         25 VAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++|+||||||||||++.|+.-.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999987653

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=9.6e-06  Score=58.16  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      ..++|+||||+|||||++-|...
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999988754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=9.7e-06  Score=58.58  Aligned_cols=21  Identities=43%  Similarity=0.558  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10472         25 VAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~gl   45 (181)
                      ++|+||||||||||.+.|+-.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            679999999999999998643

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.67  E-value=1.1e-05  Score=59.63  Aligned_cols=23  Identities=35%  Similarity=0.693  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +++|+|+.|||||||++.|....
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            68999999999999999997543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.1e-05  Score=58.93  Aligned_cols=23  Identities=22%  Similarity=0.505  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++||.|++|||||||.+.|+-.+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999997654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.66  E-value=1.2e-05  Score=56.53  Aligned_cols=23  Identities=39%  Similarity=0.423  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|+.|+|||||++.|+|-.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999854

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.66  E-value=1.1e-05  Score=57.93  Aligned_cols=25  Identities=32%  Similarity=0.464  Sum_probs=21.8

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ..+++|+||.||||||+.+.|+--+
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999999998643

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.7e-05  Score=56.71  Aligned_cols=27  Identities=26%  Similarity=0.346  Sum_probs=24.4

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      +++|+++.|.||+|||||||...++.-
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            789999999999999999999887754

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.62  E-value=8.2e-06  Score=58.21  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10472         25 VAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~gl   45 (181)
                      |||+|++++|||||++.|+|-
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999874

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.62  E-value=1.4e-05  Score=54.83  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|++|+|||||++.+.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999975

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.62  E-value=1.1e-05  Score=57.14  Aligned_cols=22  Identities=32%  Similarity=0.394  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      -++|+|++|+|||||++.|.|-
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999985

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=4.3e-05  Score=57.54  Aligned_cols=24  Identities=38%  Similarity=0.470  Sum_probs=21.3

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHh
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLE   43 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~   43 (181)
                      -+|+++.|.|++|+|||||+-.|+
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHH
Confidence            369999999999999999987665

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.61  E-value=1.5e-05  Score=54.84  Aligned_cols=23  Identities=30%  Similarity=0.379  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|++|||||||++.+.+-.
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999997643

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.60  E-value=1.1e-05  Score=56.78  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=21.4

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .-.++|+|++|||||||++.+.+-.
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468999999999999999998754

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=1.7e-05  Score=55.92  Aligned_cols=22  Identities=41%  Similarity=0.439  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      +++|+|.+|+|||||++.|.|-
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.59  E-value=1.6e-05  Score=55.76  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHhcCC
Q psy10472         25 VAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++|+|++||||||+.+.|+-.+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6889999999999999998665

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.59  E-value=1.8e-05  Score=56.14  Aligned_cols=23  Identities=43%  Similarity=0.424  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +++|+|++|+|||||++.|+|-.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999863

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.57  E-value=1.8e-05  Score=54.69  Aligned_cols=22  Identities=36%  Similarity=0.537  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|++|||||||++.+.+-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999999775

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.57  E-value=2.3e-05  Score=56.11  Aligned_cols=25  Identities=32%  Similarity=0.658  Sum_probs=22.4

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhc
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~g   44 (181)
                      ++|=.++|+||.||||||+.+.|+-
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            4677889999999999999999994

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.56  E-value=1.6e-05  Score=57.21  Aligned_cols=28  Identities=25%  Similarity=0.470  Sum_probs=24.5

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++.+.++.|+||.||||||+.+.|+--+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567899999999999999999998754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.56  E-value=1.7e-05  Score=62.20  Aligned_cols=37  Identities=27%  Similarity=0.496  Sum_probs=30.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG   57 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g   57 (181)
                      .+.-+.|.||.||||||||+.|++..+|..=-|.+..
T Consensus       165 ~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd  201 (323)
T d1g6oa_         165 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED  201 (323)
T ss_dssp             HTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred             hCCCEEEEeeccccchHHHHHHhhhcccccceeeccc
Confidence            3445899999999999999999999988776667743

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=2e-05  Score=56.88  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|++|||||||++.|.+-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999875

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=2.3e-05  Score=56.35  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=23.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +-.+++|+||.||||||+.+.|+--+
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            34579999999999999999999766

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.54  E-value=1.9e-05  Score=55.73  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .+.|+|++||||||+-+.|+-.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=2.7e-05  Score=55.38  Aligned_cols=35  Identities=29%  Similarity=0.359  Sum_probs=26.5

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCE
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGV   58 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~   58 (181)
                      +..+++.++|++||||||+.+-++-.    .|.+.++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~D   46 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNRD   46 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh----cCCEEEchH
Confidence            45679999999999999999988542    344555543

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=2.4e-05  Score=54.16  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|+.|+|||||++.|.|.-
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999863

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.50  E-value=2.3e-05  Score=55.33  Aligned_cols=25  Identities=32%  Similarity=0.492  Sum_probs=21.6

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      .++.|.|++||||||+.+.|+..+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3678899999999999999987653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.50  E-value=1.5e-05  Score=56.57  Aligned_cols=22  Identities=36%  Similarity=0.569  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHhcCC
Q psy10472         25 VAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +||+|++++|||||++.|.|..
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999998753

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.49  E-value=1.9e-05  Score=56.51  Aligned_cols=23  Identities=39%  Similarity=0.602  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +++|+||.||||||+.+.|+--+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999997554

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.48  E-value=3e-05  Score=54.80  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999996544

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3e-05  Score=55.51  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +++|+||.||||||..+.|+--+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998543

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.48  E-value=2.8e-05  Score=54.55  Aligned_cols=22  Identities=41%  Similarity=0.540  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHhcCC
Q psy10472         25 VAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +.|+|++||||||+-+.|+-.+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999999999998654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.42  E-value=5.1e-05  Score=52.77  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|+.|||||||++.+.+-.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            47899999999999999998854

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.42  E-value=2.8e-05  Score=55.75  Aligned_cols=24  Identities=33%  Similarity=0.542  Sum_probs=21.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      -+++|-|+.||||||+++.|...+
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999998765

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.42  E-value=3.3e-05  Score=57.77  Aligned_cols=37  Identities=16%  Similarity=0.274  Sum_probs=28.4

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISG   57 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g   57 (181)
                      .+....+.|.||+|||||||.+.|++-+.  .+-+.++.
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~   65 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   65 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhh--cceEEEec
Confidence            33445689999999999999999999764  23456665

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=1.8e-05  Score=55.83  Aligned_cols=24  Identities=33%  Similarity=0.381  Sum_probs=21.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      =.++|+|++++|||||++.|.+..
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            359999999999999999998864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.40  E-value=4.3e-05  Score=54.98  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +++++|.+|||||||.+.|+..+
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.39  E-value=4.4e-05  Score=54.23  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .+.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.37  E-value=4.1e-05  Score=54.74  Aligned_cols=21  Identities=48%  Similarity=0.746  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      ++||.|++||||||+.+.|.-
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.37  E-value=4.7e-05  Score=55.49  Aligned_cols=23  Identities=30%  Similarity=0.634  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +++|-||+||||||+.+.|+--+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57888999999999999998543

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=5.3e-05  Score=54.92  Aligned_cols=30  Identities=33%  Similarity=0.533  Sum_probs=24.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhc---CCCCCcceE
Q psy10472         24 KVAIVGSSGNGKSTIVALLER---FYDVSSGNI   53 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g---l~~p~~G~i   53 (181)
                      +++|.||+||||||+-+.|+-   +..-++|.+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            899999999999999999974   444445554

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.31  E-value=4.8e-05  Score=57.49  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|.+|+|||||++.|.|-.
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            48999999999999999999964

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.31  E-value=6.5e-05  Score=53.20  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999997544

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=3.8e-05  Score=59.75  Aligned_cols=24  Identities=33%  Similarity=0.488  Sum_probs=21.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      ++||.|++||||||+.+.|..++.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHh
Confidence            899999999999999999987753

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.30  E-value=6.8e-05  Score=54.91  Aligned_cols=42  Identities=24%  Similarity=0.327  Sum_probs=30.8

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCC--CcceEEECCEECC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDV--SSGNITISGVDLK   61 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p--~~G~i~i~g~~i~   61 (181)
                      ++|-++.+.|.||||||||.+.|.-.+..  ..-.+.++|..+.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR   65 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR   65 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence            57889999999999999999999743321  1234677776543

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=5.9e-05  Score=53.33  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+||.||||||..+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.29  E-value=6.1e-05  Score=52.71  Aligned_cols=22  Identities=41%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|.+|||||||++.|.+-
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999885

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=4.4e-05  Score=56.22  Aligned_cols=27  Identities=33%  Similarity=0.545  Sum_probs=24.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      ++.+++|-|+-||||||+++.|+..+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            367899999999999999999998763

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=7e-05  Score=54.80  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=23.7

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhc
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~g   44 (181)
                      +++|+++.|.||+|||||||...++-
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999999987753

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.27  E-value=1.7e-05  Score=54.92  Aligned_cols=23  Identities=35%  Similarity=0.414  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+|++|+|||||++.|.|-.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999999853

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=6.3e-05  Score=54.39  Aligned_cols=22  Identities=27%  Similarity=0.280  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      -++|+|+.|||||||++.+.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.24  E-value=7.8e-05  Score=51.91  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|++|+|||||++.+.+-
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999988653

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=8.8e-05  Score=53.84  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=23.3

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +|.+++|-|+-||||||+++.|.-.+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999998644

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00018  Score=50.23  Aligned_cols=28  Identities=32%  Similarity=0.477  Sum_probs=22.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC-----CCCCcc
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF-----YDVSSG   51 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl-----~~p~~G   51 (181)
                      .++++|.+|+|||||++.+.+-     +.|+-|
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~   36 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE   36 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCccCccee
Confidence            4789999999999999987652     345555

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.22  E-value=7.6e-05  Score=52.99  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHhcCC
Q psy10472         25 VAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +||+|+..||||||++.|.+..
T Consensus         8 IaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEeCCCCcHHHHHHHHHHhc
Confidence            8999999999999999999753

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.21  E-value=8.6e-05  Score=53.93  Aligned_cols=21  Identities=38%  Similarity=0.643  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      ++||.|+.||||||+.+++.-
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998863

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=9.5e-05  Score=52.40  Aligned_cols=23  Identities=26%  Similarity=0.583  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .+.|+||.||||||+.+.|+--+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47799999999999999998654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=9.8e-05  Score=54.00  Aligned_cols=27  Identities=26%  Similarity=0.258  Sum_probs=23.8

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++|-+++|-|+-||||||+.+.|.-.+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999987654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=4.8e-05  Score=59.61  Aligned_cols=27  Identities=22%  Similarity=0.417  Sum_probs=23.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      ..-+++|.||.|||||||+..|...+.
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            456799999999999999999986543

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=9.3e-05  Score=51.88  Aligned_cols=21  Identities=38%  Similarity=0.602  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++|+|++|+|||||++.+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            378999999999999999875

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.20  E-value=8.8e-05  Score=54.40  Aligned_cols=27  Identities=44%  Similarity=0.789  Sum_probs=22.4

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      ++.+++++||+|+||||.+-=|+..+.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~   31 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ   31 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467999999999999998777776554

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.20  E-value=0.0001  Score=52.99  Aligned_cols=23  Identities=30%  Similarity=0.732  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|+||.||||||+.+.|+--+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            67899999999999999998654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.19  E-value=8.9e-05  Score=54.47  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .+.|.||+|+|||||+++++..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            47899999999999999998754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.00011  Score=54.38  Aligned_cols=25  Identities=24%  Similarity=0.391  Sum_probs=22.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      ..+.|.||+|+||||++++++..+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999998764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.18  E-value=0.0001  Score=54.70  Aligned_cols=26  Identities=19%  Similarity=0.225  Sum_probs=22.3

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .+.++.|.||.|+|||||++.++.-.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            56799999999999999999886543

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.14  E-value=0.00012  Score=51.30  Aligned_cols=20  Identities=25%  Similarity=0.463  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10472         25 VAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~g   44 (181)
                      ++++|++|+|||||++.+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            89999999999999998864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.14  E-value=0.00013  Score=54.90  Aligned_cols=33  Identities=30%  Similarity=0.402  Sum_probs=26.7

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHhc
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~g   44 (181)
                      |+++..=+.+|+++.|.|++|+|||||+.-++-
T Consensus        25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            444433378999999999999999999887764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00015  Score=50.52  Aligned_cols=22  Identities=36%  Similarity=0.558  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|++|+|||||++.+.+-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999988753

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.00013  Score=58.59  Aligned_cols=24  Identities=33%  Similarity=0.613  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      .++|+|++|+|||||++.|.|...
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~~   81 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIGN   81 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            389999999999999999999653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.12  E-value=0.00011  Score=51.57  Aligned_cols=22  Identities=23%  Similarity=0.465  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|+.|+|||||++.+.+-
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.11  E-value=0.00015  Score=52.68  Aligned_cols=24  Identities=29%  Similarity=0.635  Sum_probs=21.8

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHH
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALL   42 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l   42 (181)
                      +++|+++.|.|++|+|||||..-+
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHH
Confidence            889999999999999999997544

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00014  Score=53.45  Aligned_cols=26  Identities=19%  Similarity=0.151  Sum_probs=23.9

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhc
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~g   44 (181)
                      |++|.++.|.||+|||||||...++.
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999999887764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.00012  Score=53.67  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHhcCC
Q psy10472         25 VAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +.|.||+|+|||||+++++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999998753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.09  E-value=0.00014  Score=53.60  Aligned_cols=25  Identities=24%  Similarity=0.422  Sum_probs=22.5

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHh
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLE   43 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~   43 (181)
                      +++|+++.|.||+|||||||.--++
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence            7899999999999999999987554

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00015  Score=53.11  Aligned_cols=28  Identities=25%  Similarity=0.336  Sum_probs=25.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDV   48 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p   48 (181)
                      +|.+++|-|+-||||||+.+.|.-.+..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            6899999999999999999999876653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00026  Score=49.42  Aligned_cols=21  Identities=29%  Similarity=0.583  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++|+|.+|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999997764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00015  Score=51.05  Aligned_cols=21  Identities=43%  Similarity=0.776  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++++|+.|+|||||++.+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999998765

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.07  E-value=0.00016  Score=53.11  Aligned_cols=27  Identities=19%  Similarity=0.309  Sum_probs=24.0

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      +++|.++.|.||+|||||||+.-++--
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            789999999999999999998777644

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.06  E-value=0.00016  Score=52.80  Aligned_cols=27  Identities=19%  Similarity=0.207  Sum_probs=24.2

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      +++|+++.|.|++|+|||||.--++--
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            789999999999999999998877643

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00022  Score=49.50  Aligned_cols=21  Identities=29%  Similarity=0.540  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++++|++|+|||||++-+.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.05  E-value=0.00013  Score=53.69  Aligned_cols=28  Identities=21%  Similarity=0.391  Sum_probs=23.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCcc
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDVSSG   51 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G   51 (181)
                      .+.+.||+|+||||+.++|+..+....+
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~   64 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNIH   64 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCCcc
Confidence            4789999999999999999987765543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.04  E-value=7.4e-05  Score=57.47  Aligned_cols=24  Identities=29%  Similarity=0.628  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      ++||.|+|||||||+.+.|.-.+.
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Confidence            899999999999999999877653

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.03  E-value=0.0002  Score=52.94  Aligned_cols=29  Identities=21%  Similarity=0.455  Sum_probs=24.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCCCCcc
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYDVSSG   51 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~p~~G   51 (181)
                      ..+.|.||.|+||||+++.++..++...+
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~   72 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKDKTT   72 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence            57899999999999999999987754433

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.0002  Score=50.65  Aligned_cols=21  Identities=29%  Similarity=0.382  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10472         25 VAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~gl   45 (181)
                      ++|+|+.|+|||||++.+.+-
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            889999999999999998754

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00019  Score=52.22  Aligned_cols=22  Identities=36%  Similarity=0.593  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      ++||+|+.||||||..+++..+
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            6899999999999999998643

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00019  Score=50.37  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|++|+|||||++.+.+-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3789999999999999987654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.00  E-value=0.00016  Score=55.91  Aligned_cols=37  Identities=19%  Similarity=0.422  Sum_probs=26.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEE
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVD   59 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~   59 (181)
                      ++.-+.++||+|||||+|.|+|+..+..  --+.+++-.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~   84 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATK   84 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhcccc--chhcccccc
Confidence            3446678999999999999999987531  234555433

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.00  E-value=0.00017  Score=53.23  Aligned_cols=24  Identities=21%  Similarity=0.451  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      -+.+.||.|+|||||.+++++.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            477999999999999999998653

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00021  Score=49.85  Aligned_cols=23  Identities=30%  Similarity=0.549  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|++|+|||||++.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            47899999999999999998764

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00012  Score=53.85  Aligned_cols=27  Identities=33%  Similarity=0.542  Sum_probs=21.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      .-.+++++||+|+||||.+-=|+..+.
T Consensus         8 ~p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            346899999999999998777776554

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00024  Score=49.41  Aligned_cols=21  Identities=33%  Similarity=0.502  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++|+|+.|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.97  E-value=0.00021  Score=50.60  Aligned_cols=21  Identities=38%  Similarity=0.619  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++++|.+|+|||||++.+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998774

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00025  Score=53.46  Aligned_cols=28  Identities=21%  Similarity=0.269  Sum_probs=23.3

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++...-+.+.||+|||||+|.+.|+..+
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHc
Confidence            4445568899999999999999999865

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.96  E-value=0.00041  Score=49.39  Aligned_cols=32  Identities=34%  Similarity=0.370  Sum_probs=24.1

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHh
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLE   43 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~   43 (181)
                      .++..-+.+ .|.-+.|.|+||+|||||.-.+.
T Consensus         4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_           4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence            445444444 47789999999999999887765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00026  Score=49.16  Aligned_cols=22  Identities=32%  Similarity=0.526  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|++|+|||||++.+.+-
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999987654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.95  E-value=0.00036  Score=49.74  Aligned_cols=32  Identities=31%  Similarity=0.338  Sum_probs=25.7

Q ss_pred             ccceeeEEecCCcEEEEECCCCCcHHHHHHHHh
Q psy10472         11 ILKDFNLRIPAGQKVAIVGSSGNGKSTIVALLE   43 (181)
Q Consensus        11 vl~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~   43 (181)
                      .++...+.+ .|.-+.|.|+||+|||||...+.
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            355555666 68889999999999999987765

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00027  Score=49.38  Aligned_cols=21  Identities=29%  Similarity=0.681  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++|+|+.|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00036  Score=48.90  Aligned_cols=23  Identities=30%  Similarity=0.613  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|..|+|||||++.+.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCc
Confidence            47899999999999999998754

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.93  E-value=0.00018  Score=52.88  Aligned_cols=26  Identities=27%  Similarity=0.523  Sum_probs=20.4

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +..+++++||+|+||||.+-=|+-.+
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999866666544

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0006  Score=48.07  Aligned_cols=22  Identities=18%  Similarity=0.428  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|.+|+|||||++.+.+-
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999977653

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.92  E-value=0.00023  Score=52.49  Aligned_cols=22  Identities=23%  Similarity=0.450  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      ++||+|...||||||++.|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            6999999999999999999874

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00034  Score=48.58  Aligned_cols=22  Identities=36%  Similarity=0.513  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|+.|+|||||++-+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999988753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00051  Score=47.80  Aligned_cols=21  Identities=43%  Similarity=0.621  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++++|++|+|||||++-+.+
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999998875

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.91  E-value=0.00026  Score=50.87  Aligned_cols=23  Identities=39%  Similarity=0.582  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +++|-|.-||||||+++.|...+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999998654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.90  E-value=0.00027  Score=51.66  Aligned_cols=27  Identities=33%  Similarity=0.490  Sum_probs=21.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      ...++.++||+|+||||.+-=|+..+.
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            356889999999999998877776553

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.90  E-value=0.0003  Score=49.28  Aligned_cols=28  Identities=21%  Similarity=0.192  Sum_probs=25.4

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++|.+++|.|+=|||||||.|.++.-+
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            4789999999999999999999998665

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.90  E-value=0.00027  Score=48.92  Aligned_cols=20  Identities=20%  Similarity=0.394  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10472         25 VAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~g   44 (181)
                      ++++|..|+|||||++.+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00032  Score=49.11  Aligned_cols=20  Identities=30%  Similarity=0.541  Sum_probs=17.8

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10472         25 VAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~g   44 (181)
                      ++++|++|+|||||++-+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            88999999999999977654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00032  Score=48.49  Aligned_cols=22  Identities=18%  Similarity=0.363  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|..|+|||||++.+.+-
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.88  E-value=0.00015  Score=51.18  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|++|+|||||++.+.+-
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999998643

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.87  E-value=0.00029  Score=49.03  Aligned_cols=21  Identities=38%  Similarity=0.612  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++|+|.+|+|||||++-+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999999874

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00025  Score=49.86  Aligned_cols=22  Identities=27%  Similarity=0.463  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|++|+|||||++.+..-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999887754

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00038  Score=48.29  Aligned_cols=22  Identities=32%  Similarity=0.474  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++|+|.+|+|||||++.+.+-
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999887653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00028  Score=49.60  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|..|+|||||++.+.+-
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999988763

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.85  E-value=0.00025  Score=53.08  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      -+.|.||.|||||+|.+.|+...
T Consensus        42 ~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhcc
Confidence            47899999999999999999753

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00031  Score=48.81  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++|+|.+|+|||||++.+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.00064  Score=47.38  Aligned_cols=21  Identities=33%  Similarity=0.574  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++++|..|+|||||++.+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998765

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.00033  Score=53.71  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      ++||.|+.|||||||.+.|.-.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            7899999999999999877533

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.81  E-value=0.00032  Score=54.65  Aligned_cols=24  Identities=38%  Similarity=0.558  Sum_probs=21.4

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .-+++|.||.|||||||+..|...
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHHH
Confidence            456999999999999999999864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.80  E-value=0.00031  Score=51.24  Aligned_cols=22  Identities=36%  Similarity=0.410  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHhcCC
Q psy10472         25 VAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +.+.||+|+||||+.++++..+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHH
Confidence            6799999999999999998643

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.00035  Score=48.61  Aligned_cols=22  Identities=32%  Similarity=0.459  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|..|+|||||++-+.+-
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999977643

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.79  E-value=0.00032  Score=56.21  Aligned_cols=33  Identities=24%  Similarity=0.254  Sum_probs=26.0

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCCCcce
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSSGN   52 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~   52 (181)
                      .++.++.+.||.||||||++..+..........
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~  188 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN  188 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCce
Confidence            356699999999999999999998865433334

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00035  Score=49.32  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++|+|.+|+|||||++.+..
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999988764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.78  E-value=0.00034  Score=52.86  Aligned_cols=28  Identities=18%  Similarity=0.335  Sum_probs=24.4

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +++..-+.|.||+|+|||+|.+++++.+
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence            4455668899999999999999999976

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.00031  Score=50.20  Aligned_cols=20  Identities=30%  Similarity=0.587  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10472         25 VAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~g   44 (181)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            89999999999999998774

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.78  E-value=0.0004  Score=50.86  Aligned_cols=28  Identities=32%  Similarity=0.500  Sum_probs=23.6

Q ss_pred             EEEEECCCCCcHHHHHHHH-hcCCCCCcc
Q psy10472         24 KVAIVGSSGNGKSTIVALL-ERFYDVSSG   51 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l-~gl~~p~~G   51 (181)
                      .+.|+|.+|+|||||++-+ .+-..|+-|
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            5799999999999999976 455668877

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00033  Score=48.95  Aligned_cols=20  Identities=25%  Similarity=0.571  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10472         25 VAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~g   44 (181)
                      ++++|..|+|||||++.+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00035  Score=48.92  Aligned_cols=21  Identities=33%  Similarity=0.591  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++|+|..|+|||||++-+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.75  E-value=0.00034  Score=52.38  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .-+.+.||.|+|||+|.+.|+..+
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEecCCCCChhHHHHHHHHHc
Confidence            348999999999999999999764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00057  Score=47.54  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|..|+|||||++.+..-
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998843

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.71  E-value=0.00025  Score=49.67  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|++|+|||||++.+..-.
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999997544

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.69  E-value=0.00041  Score=50.82  Aligned_cols=26  Identities=35%  Similarity=0.565  Sum_probs=17.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ...+++++||+|+||||.+-=|+..+
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            45679999999999999877666554

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.00042  Score=50.46  Aligned_cols=21  Identities=29%  Similarity=0.540  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10472         25 VAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~gl   45 (181)
                      +.+.||.|+||||++++++..
T Consensus        38 lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHH
Confidence            779999999999999999874

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.00028  Score=49.40  Aligned_cols=21  Identities=29%  Similarity=0.591  Sum_probs=9.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++++|..|+|||||++.+++
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999987765

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00049  Score=52.74  Aligned_cols=30  Identities=23%  Similarity=0.296  Sum_probs=27.0

Q ss_pred             EEecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         17 LRIPAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +.|..|+..+|+|++|+|||||+..|+...
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            568899999999999999999999998754

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.00036  Score=51.46  Aligned_cols=33  Identities=15%  Similarity=0.399  Sum_probs=24.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCcEEEEEecCchhh
Q psy10472        123 ALDNESEKLVQAALESACKGRTVLMIAHRLSTV  155 (181)
Q Consensus       123 ~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~  155 (181)
                      .|.......+.+.+........+|++|++.+.+
T Consensus       142 ~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i  174 (252)
T d1sxje2         142 SLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI  174 (252)
T ss_dssp             SSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred             ccccccchhhhcccccccccccceeeeccccch
Confidence            466777777777777665667789999988643

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.66  E-value=0.00062  Score=47.85  Aligned_cols=30  Identities=30%  Similarity=0.540  Sum_probs=25.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCcceE
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDVSSGNI   53 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G~i   53 (181)
                      .++|+|..|+|||||++-+..-..|+.|..
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~   33 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence            478999999999999999877767777743

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00027  Score=49.43  Aligned_cols=21  Identities=38%  Similarity=0.582  Sum_probs=18.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++++|++|+|||||++.+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999997754

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.64  E-value=0.00057  Score=51.30  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=21.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .-+.|.||+|||||+|.++++...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceeEEecCCCCCchHHHHHHHHHh
Confidence            348899999999999999999864

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.64  E-value=0.00023  Score=55.33  Aligned_cols=26  Identities=35%  Similarity=0.455  Sum_probs=23.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYDV   48 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~p   48 (181)
                      --+.|.||.|+|||||+|.++++++|
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            35799999999999999999999976

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.63  E-value=0.00054  Score=47.72  Aligned_cols=21  Identities=43%  Similarity=0.574  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++|+|..|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00055  Score=47.64  Aligned_cols=21  Identities=38%  Similarity=0.667  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999997654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.00058  Score=48.40  Aligned_cols=28  Identities=29%  Similarity=0.456  Sum_probs=23.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhc--CCCCCcc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER--FYDVSSG   51 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g--l~~p~~G   51 (181)
                      .+.|+|.+|+|||||++-+.-  -..|+-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            478999999999999998832  2468888

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00061  Score=47.26  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .++++|.+|+|||||++-+..-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999987643

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0006  Score=48.24  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++|+|.+|+|||||++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            489999999999999988663

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.54  E-value=0.0004  Score=51.55  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++.+.||.|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            35567999999999999999765

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.53  E-value=0.00051  Score=55.74  Aligned_cols=24  Identities=25%  Similarity=0.589  Sum_probs=21.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      =+.++||+|||||-|.|.|++++.
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999763

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.00053  Score=51.86  Aligned_cols=41  Identities=22%  Similarity=0.280  Sum_probs=31.0

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCC-CCCcceEEECCEE
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFY-DVSSGNITISGVD   59 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~-~p~~G~i~i~g~~   59 (181)
                      ++.|.++-|.||+|||||||+-.++... ++..--++++.+.
T Consensus        51 i~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          51 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            6789999999999999999977666543 3434456777654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.48  E-value=0.00072  Score=47.63  Aligned_cols=21  Identities=29%  Similarity=0.661  Sum_probs=18.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++++|.+|+|||||++-+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999986654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.00071  Score=48.07  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=18.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      .++++|++|+|||||++.+..
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999987753

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.45  E-value=0.0012  Score=46.52  Aligned_cols=31  Identities=35%  Similarity=0.338  Sum_probs=23.0

Q ss_pred             cceeeEEecCCcEEEEECCCCCcHHHHHHHHh
Q psy10472         12 LKDFNLRIPAGQKVAIVGSSGNGKSTIVALLE   43 (181)
Q Consensus        12 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~l~   43 (181)
                      ++..-+. -.|.-+.|.|+||+|||||.-.+.
T Consensus         6 ~H~~~v~-~~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2           6 LHGVLVD-VYGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EESEEEE-ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHH
Confidence            4443343 457789999999999999886654

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.00069  Score=51.59  Aligned_cols=24  Identities=38%  Similarity=0.304  Sum_probs=21.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      -+++|+||-++||||||+.|.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            379999999999999999999864

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.37  E-value=0.0011  Score=47.27  Aligned_cols=22  Identities=27%  Similarity=0.581  Sum_probs=20.2

Q ss_pred             EEEECCCCCcHHHHHHHHhcCC
Q psy10472         25 VAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +||+|.-.+|||||++.|.|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999999854

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.32  E-value=0.0011  Score=48.59  Aligned_cols=21  Identities=19%  Similarity=0.330  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10472         24 KVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~g   44 (181)
                      ++||.|+-||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999954

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.31  E-value=0.00083  Score=50.95  Aligned_cols=42  Identities=21%  Similarity=0.335  Sum_probs=31.1

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcce-EEECCEE
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGN-ITISGVD   59 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~-i~i~g~~   59 (181)
                      =++.|.++-+.||+|||||||+-.++....-..|. |+|+.+.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            36789999999999999999976665544434444 5667654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0011  Score=48.49  Aligned_cols=25  Identities=40%  Similarity=0.630  Sum_probs=22.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      .+++|=|+-||||||+++.|.-.+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            5899999999999999999987653

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0015  Score=50.46  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=22.1

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ...+.++||+|+|||.|.+.|+..+
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhc
Confidence            3368899999999999999999875

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.16  E-value=0.0012  Score=50.72  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      -+||+|..-+|||||++.|+|.-
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             cEeEECCCCCCHHHHHHHHHCCC
Confidence            38999999999999999998863

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.12  E-value=0.0011  Score=50.26  Aligned_cols=41  Identities=24%  Similarity=0.357  Sum_probs=31.3

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcc-eEEECCEE
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSG-NITISGVD   59 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G-~i~i~g~~   59 (181)
                      ++.|.++-|.||+|||||||.-.++....-..| -++||.+.
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~   95 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH   95 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc
Confidence            678999999999999999999888766543334 45666653

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.11  E-value=0.0016  Score=51.28  Aligned_cols=30  Identities=27%  Similarity=0.364  Sum_probs=26.8

Q ss_pred             EecCCcEEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         18 RIPAGQKVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        18 ~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      .++++.++++.||.|+||||+.+.|++.+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            457788999999999999999999999873

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.07  E-value=0.0019  Score=49.20  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      .++++|.-.||||||++.|+|.--
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCCC
Confidence            579999999999999999999763

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.05  E-value=0.0018  Score=49.07  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .++++|.-.||||||+++|+|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999975

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.00  E-value=0.0021  Score=49.00  Aligned_cols=34  Identities=26%  Similarity=0.414  Sum_probs=27.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC------------CCCcceEEECC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY------------DVSSGNITISG   57 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~------------~p~~G~i~i~g   57 (181)
                      .+||+|...||||||++.|++--            .|.-|.|.+.+
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d   57 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD   57 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc
Confidence            59999999999999999999753            34557776544

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.97  E-value=0.0019  Score=45.35  Aligned_cols=28  Identities=25%  Similarity=0.433  Sum_probs=22.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC---CCCCcc
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF---YDVSSG   51 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl---~~p~~G   51 (181)
                      .+.++|..|+|||||++-+..-   +.|+-|
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG   34 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG   34 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence            4789999999999999988543   346666

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.94  E-value=0.0016  Score=49.41  Aligned_cols=35  Identities=23%  Similarity=0.404  Sum_probs=27.9

Q ss_pred             EEecCCcEEEEECCCCCcHHHHHHHHhcC-CCCCcc
Q psy10472         17 LRIPAGQKVAIVGSSGNGKSTIVALLERF-YDVSSG   51 (181)
Q Consensus        17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl-~~p~~G   51 (181)
                      +.+-.|+..+|+|++|+|||||+..++.- .+-..+
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~   98 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG   98 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSS
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCC
Confidence            56889999999999999999998777644 333344

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.86  E-value=0.0044  Score=46.66  Aligned_cols=34  Identities=29%  Similarity=0.435  Sum_probs=26.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCC-----------CCCcceEEECC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFY-----------DVSSGNITISG   57 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~-----------~p~~G~i~i~g   57 (181)
                      .++|+|-.-+|||||++.|++--           .|.-|.|.+.+
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d   48 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEeccc
Confidence            58999999999999999999553           45567776543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.78  E-value=0.0022  Score=48.40  Aligned_cols=20  Identities=45%  Similarity=0.728  Sum_probs=18.2

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q psy10472         24 KVAIVGSSGNGKSTIVALLE   43 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~   43 (181)
                      -++|+|+.|||||||+..|+
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            37999999999999999994

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.77  E-value=0.0025  Score=46.06  Aligned_cols=20  Identities=35%  Similarity=0.551  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10472         25 VAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~g   44 (181)
                      ++|+|..++|||||+..|..
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            79999999999999999963

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.76  E-value=0.0026  Score=46.25  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10472         25 VAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~gl   45 (181)
                      +.|.||+|||||-|+.+++--
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0021  Score=47.08  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      ++.|.|.=||||||||+-+..-
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6889999999999999999874

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.72  E-value=0.0034  Score=45.04  Aligned_cols=24  Identities=25%  Similarity=0.598  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      -++|+|.-.+|||||+..|+|...
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhhc
Confidence            489999999999999999998653

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.0029  Score=50.14  Aligned_cols=33  Identities=18%  Similarity=0.284  Sum_probs=22.5

Q ss_pred             EEEEECCCCCcHHHHHHHHh-cCCCCCcceEEEC
Q psy10472         24 KVAIVGSSGNGKSTIVALLE-RFYDVSSGNITIS   56 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~-gl~~p~~G~i~i~   56 (181)
                      -+.|+|++|||||++++.+. .+.....+-|.+|
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD   85 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD   85 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             eEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence            48999999999999987543 3333333444444

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.54  E-value=0.0057  Score=47.54  Aligned_cols=32  Identities=22%  Similarity=0.226  Sum_probs=25.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCcceEEE
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITI   55 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i   55 (181)
                      .++|=|+=||||||+++.|...+....+.+.+
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~   39 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF   39 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence            57888999999999999999987655444443

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.48  E-value=0.0034  Score=47.58  Aligned_cols=20  Identities=20%  Similarity=0.298  Sum_probs=18.1

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q psy10472         24 KVAIVGSSGNGKSTIVALLE   43 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~   43 (181)
                      -++|+|..|||||||...|+
T Consensus         8 ni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            37999999999999999984

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.0042  Score=45.59  Aligned_cols=33  Identities=15%  Similarity=0.119  Sum_probs=25.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCcEEEEEecCchhh
Q psy10472        123 ALDNESEKLVQAALESACKGRTVLMIAHRLSTV  155 (181)
Q Consensus       123 ~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~  155 (181)
                      .|....+..++..++....+..+|++|++..-+
T Consensus       126 ~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i  158 (239)
T d1njfa_         126 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL  158 (239)
T ss_dssp             GSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred             cCCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence            567777778888887666678899999987754

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.0047  Score=44.48  Aligned_cols=34  Identities=9%  Similarity=0.119  Sum_probs=25.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhh
Q psy10472        122 GALDNESEKLVQAALESACKGRTVLMIAHRLSTV  155 (181)
Q Consensus       122 ~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~  155 (181)
                      ..|...++..+++.+++-.++..+|++|++++-+
T Consensus       118 d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~l  151 (207)
T d1a5ta2         118 ALLTDAAANALLKTLEEPPAETWFFLATREPERL  151 (207)
T ss_dssp             GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred             hhhhhhhhHHHHHHHHhhcccceeeeeecChhhh
Confidence            3566677778888887665677889999998743

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.31  E-value=0.0052  Score=46.26  Aligned_cols=23  Identities=26%  Similarity=0.309  Sum_probs=20.4

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhc
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~g   44 (181)
                      ..+++|.|.-|.|||||.+.+..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998864

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=95.24  E-value=0.0038  Score=47.31  Aligned_cols=36  Identities=17%  Similarity=0.173  Sum_probs=28.1

Q ss_pred             EEecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcce
Q psy10472         17 LRIPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGN   52 (181)
Q Consensus        17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~   52 (181)
                      +.|-+|+..+|+|++|+|||+|+..+.-...-+...
T Consensus        62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v   97 (276)
T d1fx0a3          62 IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVI   97 (276)
T ss_dssp             SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCE
T ss_pred             ccccCCceEeeccCCCCChHHHHHHHHhhhcccCce
Confidence            578899999999999999999998655444444433

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.0057  Score=46.09  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      .-+.|+||+|+|||+++.-++..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            45789999999999999998864

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.07  E-value=0.0052  Score=47.56  Aligned_cols=29  Identities=28%  Similarity=0.457  Sum_probs=23.0

Q ss_pred             EEecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         17 LRIPAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        17 l~i~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ...++| .+.+.||+|+|||.|.+.|++-.
T Consensus       119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence            344444 56668999999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.0068  Score=43.52  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=20.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         23 QKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        23 e~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      .-+.|+||+|.|||+++.-|+..+
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHH
Confidence            357899999999999999998754

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.98  E-value=0.0066  Score=46.70  Aligned_cols=36  Identities=19%  Similarity=0.204  Sum_probs=26.0

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCCC-CCcceEEECC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFYD-VSSGNITISG   57 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~~-p~~G~i~i~g   57 (181)
                      ...+.++||+|+|||.|.+.|+-.+. ....-+.++.
T Consensus        53 ~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~   89 (315)
T d1qvra3          53 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM   89 (315)
T ss_dssp             SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred             ceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEec
Confidence            33678999999999999999997652 2233445554

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.96  E-value=0.0068  Score=47.04  Aligned_cols=35  Identities=20%  Similarity=0.401  Sum_probs=27.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCE
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYDVSSGNITISGV   58 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~   58 (181)
                      +++|=|+=||||||+++.|.-.+......+.+-.+
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~E   41 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGE   41 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeC
Confidence            58899999999999999999877655445544333

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.01  Score=45.51  Aligned_cols=25  Identities=28%  Similarity=0.506  Sum_probs=20.0

Q ss_pred             eeEEe-cCCcEEEEECCCCCcHHHHH
Q psy10472         15 FNLRI-PAGQKVAIVGSSGNGKSTIV   39 (181)
Q Consensus        15 isl~i-~~Ge~~~liG~nGsGKSTLl   39 (181)
                      .|.++ +.|++..+.|-||+|||||-
T Consensus         6 csan~~~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1           6 CSANVGEKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEEECTTSCEEEEECSTTSSHHHHH
T ss_pred             cccccCCCCCEEEEEccCCCCcccce
Confidence            34444 35899999999999999965

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.82  E-value=0.0068  Score=47.63  Aligned_cols=27  Identities=19%  Similarity=0.561  Sum_probs=22.3

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ++++. +.++||+|+|||-|.|.|+.++
T Consensus        66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          66 LSKSN-ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence            34554 6778999999999999999876

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.82  E-value=0.0082  Score=45.13  Aligned_cols=58  Identities=10%  Similarity=0.078  Sum_probs=37.7

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPV   81 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~   81 (181)
                      .++-.++.+.||.++|||||+.+|..++ +..|.+  +..+ .+.....+..+++.+ .+++.
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~~--~~~~-~~f~l~~l~~k~~~~-~~e~~  158 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGCV--NWTN-ENFPFNDCVDKMVIW-WEEGK  158 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEEC--CTTC-SSCTTGGGSSCSEEE-ECSCC
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHHh-cchhhc--cccC-CCccccccCCCEEEE-EeCCC
Confidence            4566789999999999999999999998 555543  2211 122334444454544 45553

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=94.72  E-value=0.011  Score=45.56  Aligned_cols=24  Identities=29%  Similarity=0.529  Sum_probs=19.4

Q ss_pred             eEEec-CCcEEEEECCCCCcHHHHH
Q psy10472         16 NLRIP-AGQKVAIVGSSGNGKSTIV   39 (181)
Q Consensus        16 sl~i~-~Ge~~~liG~nGsGKSTLl   39 (181)
                      |.++. .|++..+.|.||+|||||-
T Consensus         7 san~~~~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1           7 SANVGKEGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEECTTCCEEEEEECTTSCHHHHT
T ss_pred             ccccCCCCCEEEEEccCCCCccccc
Confidence            44444 4899999999999999964

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.71  E-value=0.0084  Score=42.89  Aligned_cols=21  Identities=29%  Similarity=0.593  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10472         25 VAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~gl   45 (181)
                      ++++|.-.+|||||+..|.+.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            799999999999999999864

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.63  E-value=0.008  Score=46.59  Aligned_cols=24  Identities=38%  Similarity=0.462  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl~~   47 (181)
                      .++|=|+=||||||+++.|...+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            478999999999999999987653

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.55  E-value=0.0051  Score=46.79  Aligned_cols=27  Identities=30%  Similarity=0.411  Sum_probs=23.9

Q ss_pred             EEecCCcEEEEECCCCCcHHHHHHHHh
Q psy10472         17 LRIPAGQKVAIVGSSGNGKSTIVALLE   43 (181)
Q Consensus        17 l~i~~Ge~~~liG~nGsGKSTLl~~l~   43 (181)
                      +.+-.|+.++|+|++|+|||||+.-++
T Consensus        63 ~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          63 VPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             cCccCCCEEEeecCCCCChHHHHHHHH
Confidence            578899999999999999999986554

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.19  E-value=0.012  Score=42.72  Aligned_cols=19  Identities=37%  Similarity=0.599  Sum_probs=17.5

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q psy10472         25 VAIVGSSGNGKSTIVALLE   43 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~   43 (181)
                      ++++|.-++|||||+..|.
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            7999999999999999884

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.06  E-value=0.014  Score=44.98  Aligned_cols=19  Identities=37%  Similarity=0.636  Sum_probs=17.6

Q ss_pred             CCcEEEEECCCCCcHHHHH
Q psy10472         21 AGQKVAIVGSSGNGKSTIV   39 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl   39 (181)
                      .|++..+.|-||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            6889999999999999987

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.00  E-value=0.027  Score=43.91  Aligned_cols=21  Identities=38%  Similarity=0.517  Sum_probs=17.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHH
Q psy10472         21 AGQKVAIVGSSGNGKSTIVAL   41 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~   41 (181)
                      .+.++.|.||.|+||||++..
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHH
Confidence            356999999999999998743

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=93.81  E-value=0.0059  Score=39.99  Aligned_cols=21  Identities=19%  Similarity=0.281  Sum_probs=17.9

Q ss_pred             ecCCcEEEEECCCCCcHHHHH
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIV   39 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl   39 (181)
                      +++|+.+.|.+|.|||||+..
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            467999999999999999543

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.76  E-value=0.013  Score=44.27  Aligned_cols=16  Identities=25%  Similarity=0.648  Sum_probs=13.7

Q ss_pred             EEEEECCCCCcHHHHH
Q psy10472         24 KVAIVGSSGNGKSTIV   39 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl   39 (181)
                      .+.|.|+.||||||.|
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4778899999999865

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=93.64  E-value=0.02  Score=41.62  Aligned_cols=19  Identities=32%  Similarity=0.475  Sum_probs=17.9

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q psy10472         25 VAIVGSSGNGKSTIVALLE   43 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~   43 (181)
                      ++++|.-.+|||||+..|+
T Consensus        12 i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            7899999999999999995

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.62  E-value=0.016  Score=43.11  Aligned_cols=16  Identities=19%  Similarity=0.623  Sum_probs=13.7

Q ss_pred             EEEEECCCCCcHHHHH
Q psy10472         24 KVAIVGSSGNGKSTIV   39 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl   39 (181)
                      -+.|+|+.||||||.|
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4689999999999764

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=93.56  E-value=0.027  Score=42.03  Aligned_cols=28  Identities=25%  Similarity=0.323  Sum_probs=23.2

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCCCCC
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFYDVS   49 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~~p~   49 (181)
                      +-.++++|-.-+|||||++.|.|-....
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~~~~  139 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKNIAK  139 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred             ceEEEEEecCccchhhhhhhhhccceEE
Confidence            3458999999999999999999975443

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=93.44  E-value=0.026  Score=38.02  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=21.0

Q ss_pred             CcEEEEECCCCCcHHH-HHHHHhcCC
Q psy10472         22 GQKVAIVGSSGNGKST-IVALLERFY   46 (181)
Q Consensus        22 Ge~~~liG~nGsGKST-Ll~~l~gl~   46 (181)
                      |.+..++||=.||||| |++.+-.+.
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~   27 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLE   27 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHH
Confidence            6788999999999999 778776553

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.18  E-value=0.016  Score=41.70  Aligned_cols=28  Identities=21%  Similarity=0.317  Sum_probs=25.6

Q ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         19 IPAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +++-.++++.||.++|||++...|+.++
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            5777899999999999999999999886

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.74  E-value=0.022  Score=44.95  Aligned_cols=20  Identities=35%  Similarity=0.604  Sum_probs=17.0

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10472         25 VAIVGSSGNGKSTIVALLER   44 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~g   44 (181)
                      +.|+||+|+|||+++.-|+.
T Consensus        46 ~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHH
Confidence            68999999999999876653

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.70  E-value=0.042  Score=36.15  Aligned_cols=40  Identities=15%  Similarity=0.223  Sum_probs=28.0

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHH-hcCCCCCcc-eEEE-CCEE
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALL-ERFYDVSSG-NITI-SGVD   59 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l-~gl~~p~~G-~i~i-~g~~   59 (181)
                      ++|=.+.+.|-+|||||||.+.| ..+++-..| .|.+ +|.+
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~n   46 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN   46 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCC
Confidence            35667889999999999999998 555554333 4553 4443

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=92.66  E-value=0.018  Score=42.85  Aligned_cols=25  Identities=16%  Similarity=0.251  Sum_probs=19.9

Q ss_pred             ecCCcEEEEECCCCCcHHH--HHHHHh
Q psy10472         19 IPAGQKVAIVGSSGNGKST--IVALLE   43 (181)
Q Consensus        19 i~~Ge~~~liG~nGsGKST--Ll~~l~   43 (181)
                      +.+|+.+.|.+|.|||||+  |..++.
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~   32 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVR   32 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            5689999999999999996  334443

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.63  E-value=0.025  Score=37.22  Aligned_cols=23  Identities=30%  Similarity=0.261  Sum_probs=17.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHh
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLE   43 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~   43 (181)
                      ..+...|.+|.|||||+++-.+.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHH
Confidence            34667889999999999875443

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.54  E-value=0.033  Score=40.93  Aligned_cols=19  Identities=37%  Similarity=0.525  Sum_probs=17.4

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q psy10472         25 VAIVGSSGNGKSTIVALLE   43 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~   43 (181)
                      ++++|..++|||||+..|+
T Consensus         9 i~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           9 VVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            6899999999999998884

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.44  E-value=0.026  Score=43.84  Aligned_cols=19  Identities=26%  Similarity=0.466  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q psy10472         25 VAIVGSSGNGKSTIVALLE   43 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~   43 (181)
                      +||+|.-|+|||||+..|.
T Consensus        20 I~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            8999999999999999994

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=92.31  E-value=0.041  Score=46.54  Aligned_cols=27  Identities=33%  Similarity=0.460  Sum_probs=23.1

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ...+.+.|.|.||||||+-.|.|+..+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            457899999999999999988886654

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.26  E-value=0.042  Score=46.70  Aligned_cols=27  Identities=26%  Similarity=0.416  Sum_probs=23.7

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ...+.+.|.|+||||||.-.|.|+..+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999987765

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.25  E-value=0.026  Score=41.64  Aligned_cols=18  Identities=28%  Similarity=0.497  Sum_probs=17.3

Q ss_pred             EEEECCCCCcHHHHHHHH
Q psy10472         25 VAIVGSSGNGKSTIVALL   42 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l   42 (181)
                      ++|+|.-++|||||+..|
T Consensus        27 i~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             EEEEECGGGTHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHH
Confidence            799999999999999988

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.09  E-value=0.058  Score=39.64  Aligned_cols=31  Identities=35%  Similarity=0.460  Sum_probs=24.7

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCCCCCc
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFYDVSS   50 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~~p~~   50 (181)
                      ..+.-+.|.|+.|+||+++.+.|...-....
T Consensus        21 ~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~   51 (247)
T d1ny5a2          21 CAECPVLITGESGVGKEVVARLIHKLSDRSK   51 (247)
T ss_dssp             TCCSCEEEECSTTSSHHHHHHHHHHHSTTTT
T ss_pred             CCCCCEEEECCCCcCHHHHHHHHHHhcCCcc
Confidence            3456789999999999999999987654443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.07  E-value=0.048  Score=38.74  Aligned_cols=102  Identities=12%  Similarity=0.104  Sum_probs=59.7

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhcCCCCCcceEEECCEECCCCChhhhccCcEEEEccCCCCccccHHHHhhcCCCCCCHH
Q psy10472         22 GQKVAIVGSSGNGKSTIVALLERFYDVSSGNITISGVDLKHLDGTWLRGNVIGLINQEPVLFATSVRENIRYGDSSVSDE  101 (181)
Q Consensus        22 Ge~~~liG~nGsGKSTLl~~l~gl~~p~~G~i~i~g~~i~~~~~~~~r~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~  101 (181)
                      +.-+.+.||+|+||||+.+.++....-.         +-   ...+     +-++-.+.               ....-+
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~i~~~---------~~---~h~D-----~~~i~~~~---------------~~I~Id   62 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEYVEKF---------PP---KASD-----VLEIDPEG---------------ENIGID   62 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTS---------CC---CTTT-----EEEECCSS---------------SCBCHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHhcc---------cc---CCCC-----EEEEeCCc---------------CCCCHH
Confidence            4568899999999999999998754110         00   0000     11111100               112234


Q ss_pred             HHHHHHHHhcccccccc------CCCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCchhh
Q psy10472        102 QIEEAAKLANAHGFISE------FPSGALDNESEKLVQAALESACKGRTVLMIAHRLSTV  155 (181)
Q Consensus       102 ~~~~~~~~~~~~~~~~~------~P~~~LD~~~~~~i~~~l~~~~~~~tii~vtHd~~~~  155 (181)
                      .++++.+.+........      .....|...++..+++.|++-..++..|++|++.+.+
T Consensus        63 ~IR~i~~~~~~~~~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~l  122 (198)
T d2gnoa2          63 DIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYL  122 (198)
T ss_dssp             HHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred             HHHHHHHHHhhCcccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhC
Confidence            44444444433321111      1234677788888999888766788899999998754

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=91.92  E-value=0.048  Score=46.27  Aligned_cols=27  Identities=22%  Similarity=0.368  Sum_probs=23.5

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +..+.+.|.|.||||||+-.|.|+..+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            357899999999999999998887665

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.63  E-value=0.055  Score=36.03  Aligned_cols=26  Identities=35%  Similarity=0.328  Sum_probs=20.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      +|.+..|+||=.|||||-|--.+-.+
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHH
Confidence            48899999999999999554444333

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=91.14  E-value=0.06  Score=46.28  Aligned_cols=27  Identities=26%  Similarity=0.497  Sum_probs=22.7

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ...+.+.|.|.||||||+-.|.|+..+
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            457899999999999998888777654

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.05  E-value=0.027  Score=40.79  Aligned_cols=22  Identities=18%  Similarity=0.297  Sum_probs=17.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHHH
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALL   42 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l   42 (181)
                      .|+-+.+++|.|+|||+..-+.
T Consensus        57 ~g~~~~i~apTGsGKT~~~~~~   78 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFGLAM   78 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHHHHH
T ss_pred             CCCCEEEEecCCChHHHHHHHH
Confidence            5888899999999999765443

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=90.40  E-value=0.084  Score=44.88  Aligned_cols=27  Identities=26%  Similarity=0.528  Sum_probs=23.4

Q ss_pred             cCCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ...+.+.|.|+||||||+-.|.++..+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999887764

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=90.37  E-value=0.068  Score=45.86  Aligned_cols=26  Identities=27%  Similarity=0.382  Sum_probs=21.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFY   46 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~   46 (181)
                      ..+.+.|.|.||||||.-.|.|+..+
T Consensus       120 ~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         120 ENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            46899999999999999877776654

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.27  E-value=0.069  Score=37.51  Aligned_cols=19  Identities=16%  Similarity=0.371  Sum_probs=15.9

Q ss_pred             cCCcEEEEECCCCCcHHHH
Q psy10472         20 PAGQKVAIVGSSGNGKSTI   38 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTL   38 (181)
                      ..|.-+.|..|.|||||+.
T Consensus        38 ~~~~~~il~apTGsGKT~~   56 (202)
T d2p6ra3          38 FSGKNLLLAMPTAAGKTLL   56 (202)
T ss_dssp             TTCSCEEEECSSHHHHHHH
T ss_pred             HcCCCEEEEcCCCCchhHH
Confidence            3567788999999999975

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.96  E-value=0.16  Score=34.04  Aligned_cols=26  Identities=31%  Similarity=0.291  Sum_probs=20.1

Q ss_pred             cCCcEEEEECCCCCcHHHHH-HHHhcC
Q psy10472         20 PAGQKVAIVGSSGNGKSTIV-ALLERF   45 (181)
Q Consensus        20 ~~Ge~~~liG~nGsGKSTLl-~~l~gl   45 (181)
                      +.|.+..|+||=.|||||-| +.+-.+
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHh
Confidence            36899999999999999954 444443

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.40  E-value=0.17  Score=35.22  Aligned_cols=26  Identities=15%  Similarity=0.221  Sum_probs=21.3

Q ss_pred             cEEEEECCC-CCcHHHHHHHHhcCCCC
Q psy10472         23 QKVAIVGSS-GNGKSTIVALLERFYDV   48 (181)
Q Consensus        23 e~~~liG~n-GsGKSTLl~~l~gl~~p   48 (181)
                      +.+.|.|-+ |+||||+--.|+..+.-
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~   28 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKA   28 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHH
Confidence            468899997 99999998888876643

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.90  E-value=0.25  Score=34.04  Aligned_cols=19  Identities=32%  Similarity=0.462  Sum_probs=13.9

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q psy10472         25 VAIVGSSGNGKSTIVALLE   43 (181)
Q Consensus        25 ~~liG~nGsGKSTLl~~l~   43 (181)
                      +.+.+|.|||||...-.++
T Consensus        26 ~lv~~pTGsGKT~i~~~~~   44 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIA   44 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHH
Confidence            5688999999997544333

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.74  E-value=0.31  Score=33.96  Aligned_cols=22  Identities=23%  Similarity=0.243  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10472         24 KVAIVGSSGNGKSTIVALLERF   45 (181)
Q Consensus        24 ~~~liG~nGsGKSTLl~~l~gl   45 (181)
                      ++.|+|++.||||.+...++.-
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS
T ss_pred             CEEEECCCCccHHHHHHHHHhc
Confidence            4689999999999999988754

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.90  E-value=0.38  Score=33.79  Aligned_cols=26  Identities=38%  Similarity=0.617  Sum_probs=21.3

Q ss_pred             CcEEEEE-CCCCCcHHHHHHHHhcCCC
Q psy10472         22 GQKVAIV-GSSGNGKSTIVALLERFYD   47 (181)
Q Consensus        22 Ge~~~li-G~nGsGKSTLl~~l~gl~~   47 (181)
                      |.++++. +.-|+||||+---|+..+.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la   28 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALG   28 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence            5678888 6679999999988887665

>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.37  E-value=0.46  Score=36.55  Aligned_cols=25  Identities=24%  Similarity=0.456  Sum_probs=20.6

Q ss_pred             eEEecCCcEEEEEC--CCCCcHHHHHH
Q psy10472         16 NLRIPAGQKVAIVG--SSGNGKSTIVA   40 (181)
Q Consensus        16 sl~i~~Ge~~~liG--~nGsGKSTLl~   40 (181)
                      -++=+.|+.+.+.|  ||+||||+|.-
T Consensus        10 gvt~P~g~~~yvaaAFPSaCGKTnlAM   36 (363)
T d1khba1          10 GITNPEGEKKYLAAAFPSACGKTNLAM   36 (363)
T ss_dssp             EEECTTSCEEEEEEECCTTSCHHHHHT
T ss_pred             eecCCCCCEEEEEEecCccccchhHHH
Confidence            34556799999998  99999999764

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=81.14  E-value=0.56  Score=32.30  Aligned_cols=27  Identities=26%  Similarity=0.438  Sum_probs=23.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhcCCCCC
Q psy10472         21 AGQKVAIVGSSGNGKSTIVALLERFYDVS   49 (181)
Q Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~gl~~p~   49 (181)
                      |+.+++|.|-|  ||||.-.+|.-++...
T Consensus         1 p~kvI~VTGTn--GKTTt~~mi~~iL~~~   27 (214)
T d1gg4a4           1 PARVVALTGSS--GKTSVKEMTAAILSQC   27 (214)
T ss_dssp             CCEEEEEECSS--CHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHHhC
Confidence            57899999999  5999999999888754