Psyllid ID: psy10491
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 520 | 2.2.26 [Sep-21-2011] | |||||||
| Q9V7S5 | 529 | Putative inorganic phosph | yes | N/A | 0.851 | 0.837 | 0.508 | 1e-132 | |
| O61369 | 483 | Putative inorganic phosph | N/A | N/A | 0.821 | 0.884 | 0.517 | 1e-131 | |
| Q9MZD1 | 495 | Sialin OS=Ovis aries GN=S | N/A | N/A | 0.882 | 0.927 | 0.323 | 6e-73 | |
| Q9NRA2 | 495 | Sialin OS=Homo sapiens GN | yes | N/A | 0.882 | 0.927 | 0.325 | 4e-72 | |
| Q8BN82 | 495 | Sialin OS=Mus musculus GN | yes | N/A | 0.882 | 0.927 | 0.317 | 2e-70 | |
| Q8NDX2 | 589 | Vesicular glutamate trans | no | N/A | 0.867 | 0.765 | 0.317 | 3e-67 | |
| Q1L8X9 | 590 | Vesicular glutamate trans | no | N/A | 0.863 | 0.761 | 0.318 | 8e-66 | |
| Q7TSF2 | 588 | Vesicular glutamate trans | no | N/A | 0.823 | 0.727 | 0.325 | 7e-65 | |
| Q8BFU8 | 601 | Vesicular glutamate trans | no | N/A | 0.823 | 0.712 | 0.322 | 3e-64 | |
| Q9P2U7 | 560 | Vesicular glutamate trans | no | N/A | 0.859 | 0.798 | 0.304 | 2e-63 |
| >sp|Q9V7S5|PICO_DROME Putative inorganic phosphate cotransporter OS=Drosophila melanogaster GN=Picot PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 473 bits (1217), Expect = e-132, Method: Compositional matrix adjust.
Identities = 239/470 (50%), Positives = 322/470 (68%), Gaps = 27/470 (5%)
Query: 20 LKPKPKG-LGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNP----------------E 62
L+ +P+ R++ TFMLF+GMANAYVMRTNMSVAIVAM N +
Sbjct: 29 LEQQPQRCFATRYFVTFMLFLGMANAYVMRTNMSVAIVAMVNHTAIKSGEAEEYDDECGD 88
Query: 63 SSIHVDSK-----SWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAV 117
I +D +WS+ +G +LSSFFYGYV+TQIP G+L K + S + L YGM++N+V
Sbjct: 89 RDIPIDDSQDGEFAWSSALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSV 148
Query: 118 FALLVPVSSQS--IWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQ 175
FA LVPV+++ +W L AVRFIQG+GEGPIVPCTHA+LAKWIPP ERS +G VY+GAQ
Sbjct: 149 FAFLVPVAARGGGVWGLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQ 208
Query: 176 FGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKE 235
FGTIIS P+SG LA F GWP+IFYVFG++ +W + F+ V+E+P S + EK+
Sbjct: 209 FGTIISMPLSGLLAEYGFDGGWPSIFYVFGIVGTVWSIAFLIFVHEDPSSHPTIDEREKK 268
Query: 236 YILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVL 295
YI S++G D++ K+ IP+ I+KS PF +IL AHMG N+GYETLMT LPT++K+VL
Sbjct: 269 YINDSLWGTDVV---KSPPIPFKAIIKSLPFYAILFAHMGHNYGYETLMTELPTYMKQVL 325
Query: 296 HFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFI 355
F + NGL+S+ PY+AM++ S ++ +AD+ I K S ATRKL+ SIG+YGPG+ I
Sbjct: 326 RFSLKSNGLLSSLPYLAMWLFSMFISVVADWMISSKRFSHTATRKLINSIGQYGPGVALI 385
Query: 356 IPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLA 415
G T+ L + + NGGIY+GFK+NH+D++P FAG LMSITNCSAN+ G+LA
Sbjct: 386 AASYTGCDRALTLAILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMSITNCSANLAGLLA 445
Query: 416 PTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYWDK 465
P +G L++ M W++VF ++A +YI C T Y +F SG +QYWD
Sbjct: 446 PIAAGHLISDPSKPMMGQWQIVFFIAAFVYIICGTFYNIFGSGERQYWDN 495
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May be an inorganic phosphate cotransporter. Drosophila melanogaster (taxid: 7227) |
| >sp|O61369|PICO_DROAN Putative inorganic phosphate cotransporter OS=Drosophila ananassae GN=Picot PE=3 SV=1 | Back alignment and function description |
|---|
Score = 467 bits (1202), Expect = e-131, Method: Compositional matrix adjust.
Identities = 234/452 (51%), Positives = 311/452 (68%), Gaps = 25/452 (5%)
Query: 36 MLFIGMANAYVMRTNMSVAIVAMTNP---------------ESSIHVDSKS-----WSTV 75
MLF+GMANAYVMRTNMSVAIVAM N + I +D W+
Sbjct: 1 MLFLGMANAYVMRTNMSVAIVAMVNHTAIKSGEEEYDDECGDRDIPIDDSQDGEFPWNAA 60
Query: 76 ERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQS--IWCLA 133
+G +LSSFFYGYV+TQIP G+L K + S + L YGM++N+VFA LVPV+++ +W L
Sbjct: 61 LQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFAFLVPVAAREGGVWGLC 120
Query: 134 AVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTF 193
AVRFIQG+GEGPIVPCTHA+LAKWIPP ERS +G VY+GAQFGTIIS P+SG LA F
Sbjct: 121 AVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFGTIISMPLSGLLAEYGF 180
Query: 194 LQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKAS 253
GWP+IFYVFG++ +W + F+ VYE+P + ++ EK+YI S++G D+I K+
Sbjct: 181 DGGWPSIFYVFGIVGTVWSIAFLIFVYEDPSTHPKIDEREKKYINESLWGTDVI---KSP 237
Query: 254 SIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAM 313
IP+ IVKS PF +IL AHMG N+GYETLMT LPT++K+VL F + NGL+S+ PY+AM
Sbjct: 238 PIPFKSIVKSLPFYAILFAHMGHNYGYETLMTELPTYMKQVLRFSLKSNGLLSSLPYLAM 297
Query: 314 FITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLIL 373
++ S ++ +AD+ I K S ATRK++ SIG+YGPGL I G T+ L +
Sbjct: 298 WLLSMFISVIADWMISSKRFSLTATRKIINSIGQYGPGLALIAASYTGCDRALTLAILTI 357
Query: 374 AMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLS 433
+ NGGIY+GFK+NH+D++P FAG LMSITNCSAN+ G+LAP +G L++ M
Sbjct: 358 GVGLNGGIYSGFKINHLDLTPRFAGFLMSITNCSANLAGLLAPIAAGNLISDPSKPVMGQ 417
Query: 434 WKVVFLVSAVLYITCATVYLLFSSGRKQYWDK 465
W++VF ++A +YI C T Y +F SG +Q+WD
Sbjct: 418 WQIVFFIAAFVYIICGTFYNIFGSGERQFWDN 449
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May be an inorganic phosphate cotransporter. Drosophila ananassae (taxid: 7217) |
| >sp|Q9MZD1|S17A5_SHEEP Sialin OS=Ovis aries GN=SLC17A5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 275 bits (703), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 159/492 (32%), Positives = 259/492 (52%), Gaps = 33/492 (6%)
Query: 3 DPEATTSIDPATKPPKILKPKPKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPE 62
D E + P + +P P R+ F+ F G Y +R N+SVA+V M +
Sbjct: 12 DGEEGSDRTPLLQRAPRAEPAPVCCSARYNLAFLSFFGFFVLYSLRVNLSVALVDMVDSN 71
Query: 63 SSIHVDSKS----------------------WSTVERGLLLSSFFYGYVLTQIPIGLLTK 100
++ + S W +G +L SFFYGY++TQIP G +
Sbjct: 72 TTAKDNRTSYECAEHSAPIKVLHNQTGKKYRWDAETQGWILGSFFYGYIITQIPGGYVAS 131
Query: 101 NHDSHKMLAYGMVVNAVFALLVPVSSQ-SIWCLAAVRFIQGMGEGPIVPCTHAILAKWIP 159
+L +G+ A+F L P+++ + L A+R ++G+GEG P HA+ + W P
Sbjct: 132 RSGGKLLLGFGIFATAIFTLFTPLAADFGVGALVALRALEGLGEGVTYPAMHAMWSSWAP 191
Query: 160 PGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLV 219
P ERS L I Y+GAQ GT++S P+SG + Y W +FY FG++ +IW +L+I LV
Sbjct: 192 PLERSKLLSISYAGAQLGTVVSLPLSGVICY---YMNWTYVFYFFGIVGIIWFILWICLV 248
Query: 220 YENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFG 279
+ P + K ++ EKEYIL S+ + + K S+PW ++KS P +I+VAH N+
Sbjct: 249 SDTPETHKTITPYEKEYILSSL--KNQLSSQK--SVPWIPMLKSLPLWAIVVAHFSYNWT 304
Query: 280 YETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATR 339
+ TL+T+LPT++KEVL F++ +NG +SA PY+ ++ + AD + ST R
Sbjct: 305 FYTLLTLLPTYMKEVLRFNIQENGFLSAVPYLGCWLCMILSGQAADNLRARWNFSTLWVR 364
Query: 340 KLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGI 399
++ + IG GP + + +G ++ + L ++ G +GF +NH+DI+P +AGI
Sbjct: 365 RVFSLIGMIGPAIFLVAAGFIGCDYSLAVAFLTISTTLGGFCSSGFSINHLDIAPSYAGI 424
Query: 400 LMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGR 459
L+ ITN A + GM+ P I+ L + + W+ VF ++A + + A + LF+ G
Sbjct: 425 LLGITNTFATIPGMIGPIIARSLT---PENTIGEWQTVFCIAAAINVFGAIFFTLFAKGE 481
Query: 460 KQYWDKNGGEGR 471
Q W + +G
Sbjct: 482 VQNWAISDHQGH 493
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Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes (Probable). Receptor for CM101, a polysaccharide produced by group B Streptococcus with antipathoangiogenic properties. Ovis aries (taxid: 9940) |
| >sp|Q9NRA2|S17A5_HUMAN Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 272 bits (696), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 160/492 (32%), Positives = 253/492 (51%), Gaps = 33/492 (6%)
Query: 3 DPEATTSIDPATKPPKILKPKPKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPE 62
D E +T P + P R+ + F G Y +R N+SVA+V M +
Sbjct: 12 DGEESTDRTPLLPGAPRAEAAPVCCSARYNLAILAFFGFFIVYALRVNLSVALVDMVDSN 71
Query: 63 SSIHVDSKS----------------------WSTVERGLLLSSFFYGYVLTQIPIGLLTK 100
+++ + S W +G +L SFFYGY++TQIP G +
Sbjct: 72 TTLEDNRTSKACPEHSAPIKVHHNQTGKKYQWDAETQGWILGSFFYGYIITQIPGGYVAS 131
Query: 101 NHDSHKMLAYGMVVNAVFALLVPVSSQ-SIWCLAAVRFIQGMGEGPIVPCTHAILAKWIP 159
+L +G++ AV L P+++ + L +R ++G+GEG P HA+ + W P
Sbjct: 132 KIGGKMLLGFGILGTAVLTLFTPIAADLGVGPLIVLRALEGLGEGVTFPAMHAMWSSWAP 191
Query: 160 PGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLV 219
P ERS L I Y+GAQ GT+IS P+SG + Y W +FY FG I + W +L+I+LV
Sbjct: 192 PLERSKLLSISYAGAQLGTVISLPLSGIICY---YMNWTYVFYFFGTIGIFWFLLWIWLV 248
Query: 220 YENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFG 279
+ P KR+S EKEYIL S+ + S+PW I+KS P +I+VAH N+
Sbjct: 249 SDTPQKHKRISHYEKEYILSSLRN----QLSSQKSVPWVPILKSLPLWAIVVAHFSYNWT 304
Query: 280 YETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATR 339
+ TL+T+LPT++KE+L F++ +NG +S+ PY+ ++ + AD K ST R
Sbjct: 305 FYTLLTLLPTYMKEILRFNVQENGFLSSLPYLGSWLCMILSGQAADNLRAKWNFSTLCVR 364
Query: 340 KLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGI 399
++ + IG GP + + +G ++ + L ++ G +GF +NH+DI+P +AGI
Sbjct: 365 RIFSLIGMIGPAVFLVAAGFIGCDYSLAVAFLTISTTLGGFCSSGFSINHLDIAPSYAGI 424
Query: 400 LMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGR 459
L+ ITN A + GM+ P I+ L + + W+ VF ++A + + A + LF+ G
Sbjct: 425 LLGITNTFATIPGMVGPVIAKSLT---PDNTVGEWQTVFYIAAAINVFGAIFFTLFAKGE 481
Query: 460 KQYWDKNGGEGR 471
Q W N G
Sbjct: 482 VQNWALNDHHGH 493
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Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes. Homo sapiens (taxid: 9606) |
| >sp|Q8BN82|S17A5_MOUSE Sialin OS=Mus musculus GN=Slc17a5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 267 bits (682), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/492 (31%), Positives = 259/492 (52%), Gaps = 33/492 (6%)
Query: 3 DPEATTSIDPATKPPKILKPKPKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPE 62
D E ++ P + + P R+ + F G Y +R N+SVA+V M +
Sbjct: 12 DDEESSDSTPLLPGARQTEAAPVCCSARYNLAILAFCGFFVLYALRVNLSVALVDMVDSN 71
Query: 63 SSI---------------------HVDSK-SWSTVERGLLLSSFFYGYVLTQIPIGLLTK 100
+++ H K W +G +L SFFYGY++TQIP G +
Sbjct: 72 TTLTDNRTSKECAEHSAPIKVHHNHTGKKYKWDAETQGWILGSFFYGYIVTQIPGGYIAS 131
Query: 101 NHDSHKMLAYGMVVNAVFALLVPVSSQ-SIWCLAAVRFIQGMGEGPIVPCTHAILAKWIP 159
+L G++ +VF L P+++ + L +R ++G+GEG P HA+ + W P
Sbjct: 132 RVGGKLLLGLGILGTSVFTLFTPLAADLGVVTLVVLRALEGLGEGVTFPAMHAMWSSWAP 191
Query: 160 PGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLV 219
P ERS L I Y+GAQ GT+IS P+SG + Y W +FY+FG++ ++W +L++++V
Sbjct: 192 PLERSKLLTISYAGAQLGTVISLPLSGIICY---YMNWTYVFYLFGIVGIVWFILWMWIV 248
Query: 220 YENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFG 279
+ P + K +S EKEYI+ S+ + + K +PWG I+KS P +I+VAH N+
Sbjct: 249 SDTPETHKTISHYEKEYIVSSL--KNQLSSQKV--VPWGSILKSLPLWAIVVAHFSYNWS 304
Query: 280 YETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATR 339
+ TL+T+LPT++KE+L F++ +NG +SA PY ++ + ADY K ST + R
Sbjct: 305 FYTLLTLLPTYMKEILRFNVQENGFLSALPYFGCWLCMILCGQAADYLRVKWNFSTISVR 364
Query: 340 KLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGI 399
++ + +G GP + + +G ++ + L ++ G +GF +NH+DI+P +AGI
Sbjct: 365 RIFSLVGMVGPAVFLVAAGFIGCDYSLAVAFLTISTTLGGFASSGFSINHLDIAPSYAGI 424
Query: 400 LMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGR 459
L+ ITN A + GM P I+ L + + W+ VF ++A + + A + LF+ G
Sbjct: 425 LLGITNTFATIPGMTGPIIAKSLT---PDNTIREWQTVFCIAAAINVFGAIFFTLFAKGE 481
Query: 460 KQYWDKNGGEGR 471
Q W + G
Sbjct: 482 VQSWALSDHHGH 493
|
Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes. Mus musculus (taxid: 10090) |
| >sp|Q8NDX2|VGLU3_HUMAN Vesicular glutamate transporter 3 OS=Homo sapiens GN=SLC17A8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (654), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 152/479 (31%), Positives = 257/479 (53%), Gaps = 28/479 (5%)
Query: 3 DPEATTSIDPATKPPKILKPKPK-------GLGYRHWTTFMLFIGMANAYVMRTNMSVAI 55
+ E ++ +P + +P P GL R+ M +G ++ +R N+ VAI
Sbjct: 41 EEEDNIELNEEGRPVQTSRPSPPLCDCHCCGLPKRYIIAIMSGLGFCISFGIRCNLGVAI 100
Query: 56 VAMTNPESSIHVDSK--------SWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM 107
V M N S+++VD K +W GL+ SFF+GY++TQIP G ++ ++++
Sbjct: 101 VEMVN-NSTVYVDGKPEIQTAQFNWDPETVGLIHGSFFWGYIMTQIPGGFISNKFAANRV 159
Query: 108 LAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFL 166
+ + + + +P +++ + C+ VR +QG+ EG P H + +KW PP ERS L
Sbjct: 160 FGAAIFLTSTLNMFIPSAARVHYGCVMCVRILQGLVEGVTYPACHGMWSKWAPPLERSRL 219
Query: 167 GGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSD 226
+ G+ G +++ P++G L GW ++FY++G+ +IW + ++ YE P +
Sbjct: 220 ATTSFCGSYAGAVVAMPLAGVLVQ---YIGWSSVFYIYGMFGIIWYMFWLLQAYECPAAH 276
Query: 227 KRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTM 286
+S EEK YI SI G + L S PW S P +I+VA+ +++ + L+
Sbjct: 277 PTISNEEKTYIETSIGEGANVVSLSKFSTPWKRFFTSLPVYAIIVANFCRSWTFYLLLIS 336
Query: 287 LPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIG 346
P + +EV F + K GL+SA P++ M I + LADY ++IL+T A RK+M
Sbjct: 337 QPAYFEEVFGFAISKVGLLSAVPHMVMTIVVPIGGQLADYLRSRQILTTTAVRKIMNC-- 394
Query: 347 EYGPGLMFIIPVILGFTHTP--TIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSIT 404
G G+ + +++GF+HT I L+LA+ +G +GF VNH+DI+P +A ILM I+
Sbjct: 395 -GGFGMEATLLLVVGFSHTKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGIS 453
Query: 405 NCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYW 463
N + GM+ P I G + +H W+ VFL++A+++ + Y +F+SG KQ W
Sbjct: 454 NGVGTLSGMVCPLIVGAMT---RHKTREEWQNVFLIAALVHYSGVIFYGVFASGEKQEW 509
|
Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate. Homo sapiens (taxid: 9606) |
| >sp|Q1L8X9|VGLU3_DANRE Vesicular glutamate transporter 3 OS=Danio rerio GN=slc17a8 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 251 bits (642), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 151/474 (31%), Positives = 257/474 (54%), Gaps = 25/474 (5%)
Query: 5 EATTSIDPATKP---PKILKPKPKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNP 61
E T P P P +L GL R+ + +G ++ +R N+ VAIV M N
Sbjct: 47 ELTEDGRPVAAPKRSPPLLDCGCFGLPKRYIIAMLSGLGFCISFGIRCNLGVAIVEMVN- 105
Query: 62 ESSIHVDSKS--------WSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMV 113
++++++ + W GL+ SFF+GY++TQIP G ++ ++++ +
Sbjct: 106 NNTVYINGTAVMQPAQFNWDPETVGLIHGSFFWGYIVTQIPGGFISNKLAANRVFGAAIF 165
Query: 114 VNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYS 172
+ +V + +P +++ + C+ VR +QG+ EG P H + +KW PP ERS L +
Sbjct: 166 LTSVLNMFIPSAARVHYGCVMFVRILQGLVEGVTYPACHGMWSKWAPPLERSRLATTSFC 225
Query: 173 GAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVE 232
G+ G +I+ P++G L GWP++FY++GV +IW + +I L Y +P +S E
Sbjct: 226 GSYAGAVIAMPLAGILVQ---YVGWPSVFYIYGVFGIIWYIFWILLAYNSPAVHPTISEE 282
Query: 233 EKEYILYSI-FGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFL 291
E+ YI SI G +++ + PW + S P +I+VA+ +++ + L+ P +
Sbjct: 283 ERNYIETSIGEGANLMSSTEKFKTPWREFFTSMPVYAIIVANFCRSWTFYLLLISQPAYF 342
Query: 292 KEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPG 351
+EV F + K G++SA P++ M I + LAD+ +KILST RK+M G G
Sbjct: 343 EEVFGFPISKVGILSAVPHMVMTIIVPIGGQLADFLRSRKILSTTTVRKIMNC---GGFG 399
Query: 352 LMFIIPVILGFTHTPTIVC--LILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSAN 409
+ + +++GF+HT + LILA+ +G +GF VNH+DI+P +A ILM I+N
Sbjct: 400 MEATLLLVVGFSHTRAVAISFLILAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGT 459
Query: 410 VVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYW 463
+ GM+ P I G L +H L W+ VF+++++++ T Y +F+SG KQ W
Sbjct: 460 LSGMVCPLIVGALT---KHKTRLEWQHVFVIASMVHYTGVIFYAIFASGEKQDW 510
|
Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. Danio rerio (taxid: 7955) |
| >sp|Q7TSF2|VGLU3_RAT Vesicular glutamate transporter 3 OS=Rattus norvegicus GN=Slc17a8 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 248 bits (634), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 146/449 (32%), Positives = 246/449 (54%), Gaps = 21/449 (4%)
Query: 26 GLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSK--------SWSTVER 77
G+ R+ M +G ++ +R N+ VAIV M N S+++VD K +W
Sbjct: 71 GIPKRYIIAVMSGLGFCISFGIRCNLGVAIVEMVN-NSTVYVDGKPEIQTAQFNWDPETV 129
Query: 78 GLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVR 136
GL+ SFF+GY++TQIP G ++ ++++ + + + + +P +++ + C+ VR
Sbjct: 130 GLIHGSFFWGYIVTQIPGGFISNKFAANRVFGAAIFLTSTLNMFIPSAARVHYGCVMCVR 189
Query: 137 FIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQG 196
+QG+ EG P H + +KW PP ERS L + G+ G +++ P++G L G
Sbjct: 190 ILQGLVEGVTYPACHGMWSKWAPPLERSRLATTSFCGSYAGAVVAMPLAGVLVQ---YIG 246
Query: 197 WPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIP 256
W ++FY++G+ +IW + ++ YE P +S EE+ YI SI G + L + P
Sbjct: 247 WASVFYIYGMFGIIWYMFWLLQAYECPAVHPTISNEERTYIETSIGEGANLASLSKFNTP 306
Query: 257 WGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFIT 316
W S P +I+VA+ +++ + L+ P + +EV F + K GL+SA P++ M I
Sbjct: 307 WRRFFTSLPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFAISKVGLLSAVPHMVMTIV 366
Query: 317 SSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTP--TIVCLILA 374
+ LADY +KIL+T A RK+M G G+ + +++GF+HT I L+LA
Sbjct: 367 VPIGGQLADYLRSRKILTTTAVRKIMNC---GGFGMEATLLLVVGFSHTKGVAISFLVLA 423
Query: 375 MACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSW 434
+ +G +GF VNH+DI+P +A ILM I+N + GM+ P I G + +H W
Sbjct: 424 VGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPLIVGAMT---KHKTREEW 480
Query: 435 KVVFLVSAVLYITCATVYLLFSSGRKQYW 463
+ VFL++A+++ + Y +F+SG KQ W
Sbjct: 481 QNVFLIAALVHYSGVIFYGVFASGEKQDW 509
|
Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate. Rattus norvegicus (taxid: 10116) |
| >sp|Q8BFU8|VGLU3_MOUSE Vesicular glutamate transporter 3 OS=Mus musculus GN=Slc17a8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (628), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 145/449 (32%), Positives = 245/449 (54%), Gaps = 21/449 (4%)
Query: 26 GLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSK--------SWSTVER 77
G+ R+ M +G ++ +R N+ VAIV M N S+++VD K +W
Sbjct: 84 GIPKRYIIAVMSGLGFCISFGIRCNLGVAIVEMVN-NSTVYVDGKPEIQTAQFNWDPETV 142
Query: 78 GLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVR 136
GL+ SFF+GY++TQIP G ++ + ++ + + + + +P +++ + C+ VR
Sbjct: 143 GLIHGSFFWGYIVTQIPGGFISNKFAASRVFGAAIFLTSTLNMFIPSAARVHYGCVMGVR 202
Query: 137 FIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQG 196
+QG+ EG P H + +KW PP ERS L + G+ G +++ P++G L G
Sbjct: 203 ILQGLVEGVTYPACHGMWSKWAPPLERSRLATTSFCGSYAGAVVAMPLAGVLVQ---YIG 259
Query: 197 WPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIP 256
W ++FY++G+ +IW + ++ YE P + +S E+ YI SI G + L + P
Sbjct: 260 WASVFYIYGMFGIIWYMFWLLQAYECPAAHPTISNAERTYIETSIGEGANLASLSKFNTP 319
Query: 257 WGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFIT 316
W S P +I+VA+ +++ + L+ P + +EV F + K GL+SA P++ M I
Sbjct: 320 WRRFFTSLPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFAISKVGLLSAVPHMVMTIV 379
Query: 317 SSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTP--TIVCLILA 374
+ LADY +KIL+T A RK+M G G+ + +++GF+HT I L+LA
Sbjct: 380 VPIGGQLADYLRSRKILTTTAVRKIMNC---GGFGMEATLLLVVGFSHTKGVAISFLVLA 436
Query: 375 MACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSW 434
+ +G +GF VNH+DI+P +A ILM I+N + GM+ P I G + +H W
Sbjct: 437 VGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPLIVGAMT---KHKTREEW 493
Query: 435 KVVFLVSAVLYITCATVYLLFSSGRKQYW 463
+ VFL++A+++ + Y +F+SG KQ W
Sbjct: 494 QNVFLIAALVHYSGVIFYGVFASGEKQDW 522
|
Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate. Mus musculus (taxid: 10090) |
| >sp|Q9P2U7|VGLU1_HUMAN Vesicular glutamate transporter 1 OS=Homo sapiens GN=SLC17A7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (621), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/467 (30%), Positives = 252/467 (53%), Gaps = 20/467 (4%)
Query: 10 IDPATKPPKILKPKPKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESS----- 64
+ T+ P ++ GL R+ M +G ++ +R N+ VAIV+M N ++
Sbjct: 42 VTTQTRDPPVVDCTCFGLPRRYIIAIMSGLGFCISFGIRCNLGVAIVSMVNNSTTHRGGH 101
Query: 65 --IHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLV 122
+ SW GL+ SFF+GY++TQIP G + + ++++ + +V + +L+
Sbjct: 102 VVVQKAQFSWDPETVGLIHGSFFWGYIVTQIPGGFICQKFAANRVFGFAIVATSTLNMLI 161
Query: 123 PVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIIS 181
P +++ + C+ VR +QG+ EG P H I +KW PP ERS L + G+ G +++
Sbjct: 162 PSAARVHYGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTAFCGSYAGAVVA 221
Query: 182 YPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSI 241
P++G L GW ++FYV+G + W + ++ + YE+P +S EE++YI +I
Sbjct: 222 MPLAGVLVQ---YSGWSSVFYVYGSFGIFWYLFWLLVSYESPALHPSISEEERKYIEDAI 278
Query: 242 -FGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMI 300
++ L S PW S P +I+VA+ +++ + L+ P + +EV F++
Sbjct: 279 GESAKLMNPLTKFSTPWRRFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEIS 338
Query: 301 KNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVIL 360
K GL+SA P++ M I + +AD+ ++I+ST RKLM G G+ + +++
Sbjct: 339 KVGLVSALPHLVMTIIVPIGGQIADFLRSRRIMSTTNVRKLMNC---GGFGMEATLLLVV 395
Query: 361 GFTHTP--TIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTI 418
G++H+ I L+LA+ +G +GF VNH+DI+P +A ILM I+N + GM+ P I
Sbjct: 396 GYSHSKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPII 455
Query: 419 SGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYWDK 465
G + +H W+ VFL++++++ Y +F+SG KQ W +
Sbjct: 456 VGAMT---KHKTREEWQYVFLIASLVHYGGVIFYGVFASGEKQPWAE 499
|
Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 520 | ||||||
| 194756752 | 515 | picot [Drosophila ananassae] gi|19062193 | 0.865 | 0.873 | 0.503 | 1e-131 | |
| 195425514 | 507 | GK10727 [Drosophila willistoni] gi|19415 | 0.861 | 0.883 | 0.509 | 1e-131 | |
| 19922400 | 516 | picot, isoform A [Drosophila melanogaste | 0.85 | 0.856 | 0.510 | 1e-131 | |
| 195488117 | 516 | GE14046 [Drosophila yakuba] gi|194178279 | 0.85 | 0.856 | 0.508 | 1e-131 | |
| 24654215 | 529 | picot, isoform B [Drosophila melanogaste | 0.851 | 0.837 | 0.508 | 1e-130 | |
| 194882453 | 516 | GG22252 [Drosophila erecta] gi|190658512 | 0.85 | 0.856 | 0.508 | 1e-130 | |
| 350412710 | 511 | PREDICTED: putative inorganic phosphate | 0.871 | 0.886 | 0.504 | 1e-130 | |
| 195380511 | 532 | GJ21355 [Drosophila virilis] gi|19414381 | 0.848 | 0.828 | 0.509 | 1e-130 | |
| 195171663 | 515 | GL11822 [Drosophila persimilis] gi|19846 | 0.863 | 0.871 | 0.505 | 1e-129 | |
| 195057652 | 514 | GH22706 [Drosophila grimshawi] gi|193899 | 0.851 | 0.861 | 0.504 | 1e-129 |
| >gi|194756752|ref|XP_001960639.1| picot [Drosophila ananassae] gi|190621937|gb|EDV37461.1| picot [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/475 (50%), Positives = 322/475 (67%), Gaps = 25/475 (5%)
Query: 13 ATKPPKILKPKPKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNP----------- 61
+++ + KP R++ TFMLF+GMANAYVMRTNMSVAIVAM N
Sbjct: 10 SSQEKDLEKPALGCFATRYFVTFMLFLGMANAYVMRTNMSVAIVAMVNHTAIKSGEEEYD 69
Query: 62 ----ESSIHVDSKS-----WSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGM 112
+ I +D W+ +G +LSSFFYGYV+TQIP G+L K + S + L YGM
Sbjct: 70 DECGDRDIPIDDSQDGEFPWNAALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGM 129
Query: 113 VVNAVFALLVPVSSQS--IWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIV 170
++N+VFA LVPV+++ +W L AVRFIQG+GEGPIVPCTHA+LAKWIPP ERS +G V
Sbjct: 130 LINSVFAFLVPVAAREGGVWGLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAV 189
Query: 171 YSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVS 230
Y+GAQFGTIIS P+SG LA F GWP+IFYVFG++ +W + F+ VYE+P + ++
Sbjct: 190 YAGAQFGTIISMPLSGLLAEYGFDGGWPSIFYVFGIVGTVWSIAFLIFVYEDPSTHPKID 249
Query: 231 VEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTF 290
EK+YI S++G D+I K+ IP+ IVKS PF +IL AHMG N+GYETLMT LPT+
Sbjct: 250 EREKKYINESLWGTDVI---KSPPIPFKSIVKSLPFYAILFAHMGHNYGYETLMTELPTY 306
Query: 291 LKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGP 350
+K+VL F + NGL+S+ PY+AM++ S ++ +AD+ I K S ATRK++ SIG+YGP
Sbjct: 307 MKQVLRFSLKSNGLLSSLPYLAMWLLSMFISVIADWMISSKRFSLTATRKIINSIGQYGP 366
Query: 351 GLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANV 410
GL I G T+ L + + NGGIY+GFK+NH+D++P FAG LMSITNCSAN+
Sbjct: 367 GLALIAASYTGCDRALTLAILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMSITNCSANL 426
Query: 411 VGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYWDK 465
G+LAP +G L++ M W++VF ++A +YI C T Y +F SG +Q+WD
Sbjct: 427 AGLLAPIAAGNLISDPSKPVMGQWQIVFFIAAFVYIICGTFYNIFGSGERQFWDN 481
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195425514|ref|XP_002061045.1| GK10727 [Drosophila willistoni] gi|194157130|gb|EDW72031.1| GK10727 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 242/475 (50%), Positives = 322/475 (67%), Gaps = 27/475 (5%)
Query: 13 ATKPPKILKPKPKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNP----------- 61
A+ + KP R++ TFMLF+GMANAYVMRTNMSVAIVAM N
Sbjct: 10 ASTEKDLEKPHLGCFATRYFVTFMLFLGMANAYVMRTNMSVAIVAMVNHTAVNEGNEVFD 69
Query: 62 ----ESSIHVDSKS-----WSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGM 112
+ I VD+ WS+ +G +LSSFFYGYV+TQIP G+L K + + L YGM
Sbjct: 70 DECGDRDIPVDNGQDGEFKWSSSLQGYILSSFFYGYVITQIPFGILAKKFGAMRFLGYGM 129
Query: 113 VVNAVFALLVPVSSQS--IWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIV 170
++N+VFA LVPV+++ +W L AVRFIQG+GEGPIVPCTHA+LAKWIPP ERS +G V
Sbjct: 130 LINSVFAFLVPVAAREGGVWGLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAV 189
Query: 171 YSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVS 230
Y+GAQFGTIIS P+SG LA F GWP+IFYVFGV+ +W + F+F V+E+P S +
Sbjct: 190 YAGAQFGTIISMPLSGLLAEYGFDGGWPSIFYVFGVVGTVWSIAFLFFVHEDPSSHPTID 249
Query: 231 VEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTF 290
EK YI +++G D+I K+ IP+ I KS PF +IL+AHMG N+GYETLMT LPT+
Sbjct: 250 EREKRYINDALWGADVI---KSPPIPFKAIAKSLPFYAILLAHMGHNYGYETLMTELPTY 306
Query: 291 LKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGP 350
+K+VL F + NGL+S+ PY+AM++ S ++ +AD+ I K S ATRKL+ SIG+YGP
Sbjct: 307 MKQVLRFSLKSNGLLSSLPYLAMWLFSMFISVIADWMISSKRFSLTATRKLINSIGQYGP 366
Query: 351 GLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANV 410
GL I G T+ L + + NGGIY+GFK+NH+D++P FAG LM+ITNC AN+
Sbjct: 367 GLALIAASYTGCDRALTLAILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMAITNCLANL 426
Query: 411 VGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYWDK 465
G+LAP +G L+N + M W++VF ++A +YI C T Y LF SG +Q+WD+
Sbjct: 427 AGLLAPIAAGNLIN--NNPTMGQWQIVFFIAAFVYIICGTFYNLFGSGERQFWDQ 479
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|19922400|ref|NP_611146.1| picot, isoform A [Drosophila melanogaster] gi|7302896|gb|AAF57968.1| picot, isoform A [Drosophila melanogaster] gi|17862338|gb|AAL39646.1| LD22509p [Drosophila melanogaster] gi|220946938|gb|ACL86012.1| Picot-PA [synthetic construct] gi|220956502|gb|ACL90794.1| Picot-PA [synthetic construct] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/468 (51%), Positives = 319/468 (68%), Gaps = 26/468 (5%)
Query: 21 KPKPKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNP----------------ESS 64
KP R++ TFMLF+GMANAYVMRTNMSVAIVAM N +
Sbjct: 18 KPALGCFATRYFVTFMLFLGMANAYVMRTNMSVAIVAMVNHTAIKSGEAEEYDDECGDRD 77
Query: 65 IHVDSK-----SWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFA 119
I +D +WS+ +G +LSSFFYGYV+TQIP G+L K + S + L YGM++N+VFA
Sbjct: 78 IPIDDSQDGEFAWSSALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFA 137
Query: 120 LLVPVSSQS--IWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFG 177
LVPV+++ +W L AVRFIQG+GEGPIVPCTHA+LAKWIPP ERS +G VY+GAQFG
Sbjct: 138 FLVPVAARGGGVWGLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFG 197
Query: 178 TIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYI 237
TIIS P+SG LA F GWP+IFYVFG++ +W + F+ V+E+P S + EK+YI
Sbjct: 198 TIISMPLSGLLAEYGFDGGWPSIFYVFGIVGTVWSIAFLIFVHEDPSSHPTIDEREKKYI 257
Query: 238 LYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHF 297
S++G D++ K+ IP+ I+KS PF +IL AHMG N+GYETLMT LPT++K+VL F
Sbjct: 258 NDSLWGTDVV---KSPPIPFKAIIKSLPFYAILFAHMGHNYGYETLMTELPTYMKQVLRF 314
Query: 298 DMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIP 357
+ NGL+S+ PY+AM++ S ++ +AD+ I K S ATRKL+ SIG+YGPG+ I
Sbjct: 315 SLKSNGLLSSLPYLAMWLFSMFISVVADWMISSKRFSHTATRKLINSIGQYGPGVALIAA 374
Query: 358 VILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPT 417
G T+ L + + NGGIY+GFK+NH+D++P FAG LMSITNCSAN+ G+LAP
Sbjct: 375 SYTGCDRALTLAILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMSITNCSANLAGLLAPI 434
Query: 418 ISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYWDK 465
+G L++ M W++VF ++A +YI C T Y +F SG +QYWD
Sbjct: 435 AAGHLISDPSKPMMGQWQIVFFIAAFVYIICGTFYNIFGSGERQYWDN 482
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195488117|ref|XP_002092178.1| GE14046 [Drosophila yakuba] gi|194178279|gb|EDW91890.1| GE14046 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 238/468 (50%), Positives = 318/468 (67%), Gaps = 26/468 (5%)
Query: 21 KPKPKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNP----------------ESS 64
KP R++ TFMLF+GMANAYVMRTNMSVAIVAM N +
Sbjct: 18 KPALGCFATRYFVTFMLFLGMANAYVMRTNMSVAIVAMVNHTAIKSGEAEEYDDECGDRD 77
Query: 65 IHVDSKS-----WSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFA 119
I +D WS+ +G +LSSFFYGYV+TQIP G+L K + S + L YGM++N+VFA
Sbjct: 78 IPIDDSQDGEFVWSSALQGYILSSFFYGYVITQIPFGILAKKYGSMRFLGYGMLINSVFA 137
Query: 120 LLVPVSSQS--IWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFG 177
LVPV+++ +W L AVRFIQG+GEGPIVPCTHA+LAKWIPP ERS +G VY+GAQFG
Sbjct: 138 FLVPVAARGGGVWGLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFG 197
Query: 178 TIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYI 237
TIIS P+SG LA F GWP+IFYVFG++ +W + F+ V+E+P S + EK+YI
Sbjct: 198 TIISMPLSGLLAEYGFDGGWPSIFYVFGIVGTVWSIAFLIFVHEDPSSHPTIDEREKKYI 257
Query: 238 LYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHF 297
S++G D++ K+ IP+ I+KS PF +IL AHMG N+GYETLMT LPT++K+VL F
Sbjct: 258 NDSLWGSDVV---KSPPIPFKAIIKSLPFYAILFAHMGHNYGYETLMTELPTYMKQVLRF 314
Query: 298 DMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIP 357
+ NGL+S+ PY+AM++ S ++ +AD+ I K S ATRKL+ SIG+YGPG+ I
Sbjct: 315 SLKSNGLLSSLPYLAMWLFSMFISVVADWMISSKRFSHTATRKLINSIGQYGPGIALIAA 374
Query: 358 VILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPT 417
G T+ L + + NGGIY+GFK+NH+D++P FAG LMSITNCSAN+ G+LAP
Sbjct: 375 SYTGCDRALTLAILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMSITNCSANLAGLLAPI 434
Query: 418 ISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYWDK 465
+G L++ M W++VF ++A +YI C T Y +F SG +Q+WD
Sbjct: 435 AAGHLISDPSKPMMGQWQIVFFIAAFVYIICGTFYNIFGSGERQFWDN 482
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|24654215|ref|NP_725600.1| picot, isoform B [Drosophila melanogaster] gi|29428061|sp|Q9V7S5.1|PICO_DROME RecName: Full=Putative inorganic phosphate cotransporter gi|7302897|gb|AAF57969.1| picot, isoform B [Drosophila melanogaster] gi|297591846|gb|ADI46800.1| RH11868p [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 239/470 (50%), Positives = 322/470 (68%), Gaps = 27/470 (5%)
Query: 20 LKPKPKG-LGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNP----------------E 62
L+ +P+ R++ TFMLF+GMANAYVMRTNMSVAIVAM N +
Sbjct: 29 LEQQPQRCFATRYFVTFMLFLGMANAYVMRTNMSVAIVAMVNHTAIKSGEAEEYDDECGD 88
Query: 63 SSIHVDSK-----SWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAV 117
I +D +WS+ +G +LSSFFYGYV+TQIP G+L K + S + L YGM++N+V
Sbjct: 89 RDIPIDDSQDGEFAWSSALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSV 148
Query: 118 FALLVPVSSQS--IWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQ 175
FA LVPV+++ +W L AVRFIQG+GEGPIVPCTHA+LAKWIPP ERS +G VY+GAQ
Sbjct: 149 FAFLVPVAARGGGVWGLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQ 208
Query: 176 FGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKE 235
FGTIIS P+SG LA F GWP+IFYVFG++ +W + F+ V+E+P S + EK+
Sbjct: 209 FGTIISMPLSGLLAEYGFDGGWPSIFYVFGIVGTVWSIAFLIFVHEDPSSHPTIDEREKK 268
Query: 236 YILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVL 295
YI S++G D++ K+ IP+ I+KS PF +IL AHMG N+GYETLMT LPT++K+VL
Sbjct: 269 YINDSLWGTDVV---KSPPIPFKAIIKSLPFYAILFAHMGHNYGYETLMTELPTYMKQVL 325
Query: 296 HFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFI 355
F + NGL+S+ PY+AM++ S ++ +AD+ I K S ATRKL+ SIG+YGPG+ I
Sbjct: 326 RFSLKSNGLLSSLPYLAMWLFSMFISVVADWMISSKRFSHTATRKLINSIGQYGPGVALI 385
Query: 356 IPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLA 415
G T+ L + + NGGIY+GFK+NH+D++P FAG LMSITNCSAN+ G+LA
Sbjct: 386 AASYTGCDRALTLAILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMSITNCSANLAGLLA 445
Query: 416 PTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYWDK 465
P +G L++ M W++VF ++A +YI C T Y +F SG +QYWD
Sbjct: 446 PIAAGHLISDPSKPMMGQWQIVFFIAAFVYIICGTFYNIFGSGERQYWDN 495
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194882453|ref|XP_001975325.1| GG22252 [Drosophila erecta] gi|190658512|gb|EDV55725.1| GG22252 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 238/468 (50%), Positives = 319/468 (68%), Gaps = 26/468 (5%)
Query: 21 KPKPKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNP----------------ESS 64
KP R++ TFMLF+GMANAYVMRTNMSVAIVAM N +
Sbjct: 18 KPALGCFATRYFVTFMLFLGMANAYVMRTNMSVAIVAMVNHTAIKSGEAEQYDDECGDRD 77
Query: 65 IHVDSK-----SWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFA 119
I +D +W++ +G +LSSFFYGYV+TQIP G+L K + S + L YGM++N+VFA
Sbjct: 78 IPIDDSQDGEFAWNSALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFA 137
Query: 120 LLVPVSSQS--IWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFG 177
LVPV+++ +W L AVRFIQG+GEGPIVPCTHA+LAKWIPP ERS +G VY+GAQFG
Sbjct: 138 FLVPVAARGGGVWGLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFG 197
Query: 178 TIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYI 237
TIIS P+SG LA F GWP+IFYVFGV+ +W + F+ V+E+P S + EK+YI
Sbjct: 198 TIISMPLSGLLAEYGFDGGWPSIFYVFGVVGTVWSIAFLIFVHEDPSSHPTIDEREKKYI 257
Query: 238 LYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHF 297
S++G D++ K+ IP+ I+KS PF +IL AHMG N+GYETLMT LPT++K+VL F
Sbjct: 258 NDSLWGNDVV---KSPPIPFKAIIKSLPFYAILFAHMGHNYGYETLMTELPTYMKQVLRF 314
Query: 298 DMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIP 357
+ NGL+S+ PY+AM++ S ++ +AD+ I K S ATRKL+ SIG+YGPG+ I
Sbjct: 315 SLKSNGLLSSLPYLAMWLFSMFISVVADWMISSKRFSHTATRKLINSIGQYGPGIALIAA 374
Query: 358 VILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPT 417
G T+ L + + NGGIY+GFK+NH+D++P FAG LMSITNCSAN+ G+LAP
Sbjct: 375 SYTGCDRALTLAILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMSITNCSANLAGLLAPI 434
Query: 418 ISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYWDK 465
+G L++ M W++VF ++A +YI C T Y +F SG +Q+WD
Sbjct: 435 AAGHLISDPSKPMMGQWQIVFFIAAFVYIICGTFYNIFGSGERQFWDN 482
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350412710|ref|XP_003489736.1| PREDICTED: putative inorganic phosphate cotransporter-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 246/488 (50%), Positives = 331/488 (67%), Gaps = 35/488 (7%)
Query: 15 KPPKILK---PKPKGL-GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNP--------- 61
+P ++ + P P L G RH T MLF+GMANAYVMRTNMSVAIVAM N
Sbjct: 17 RPAEVFETEVPLPSALVGSRHIVTLMLFLGMANAYVMRTNMSVAIVAMINHTAIVNKEEV 76
Query: 62 --------ESSIHVDSKS---WSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAY 110
SSI S W + ++G LLSSFFYGYVLTQIP G+L K + S L
Sbjct: 77 VVNECGIVNSSITSSSDGQFVWDSTKQGYLLSSFFYGYVLTQIPFGILAKRYGSKYFLGV 136
Query: 111 GMVVNAVFALLVPVSSQ-SIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGI 169
GM++N++F LLVP+S++ + L VRFIQG+GEGPIVPCTHA+LAKWIPP ERS +G
Sbjct: 137 GMLINSLFGLLVPMSARLGYYYLMGVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAF 196
Query: 170 VYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRV 229
VY+GAQFGT+IS P+SG L+ F GWP+IFYVFG + IWCV F+ +VYE+P S R+
Sbjct: 197 VYAGAQFGTVISMPLSGILSEYGFDGGWPSIFYVFGAVGTIWCVAFLLMVYEDPESHPRI 256
Query: 230 SVEEKEYILYSIFGGDIIEDLKASS--IPWGDIVKSGPFLSILVAHMGQNFGYETLMTML 287
S +EK+YIL +++G + ASS +PW IV S PF +IL+AHMGQN+GYETLMT+L
Sbjct: 257 SEDEKKYILSALWG-----NAGASSPPVPWKSIVSSLPFWAILIAHMGQNYGYETLMTLL 311
Query: 288 PTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGE 347
PTF+K++LHFD+ NG +S+ PY+AM+I S +++++AD+ I + G+TRK++ SIG+
Sbjct: 312 PTFMKQILHFDIKSNGTVSSLPYLAMWIFSMLVSHVADWMISSGKFNHGSTRKIINSIGQ 371
Query: 348 YGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCS 407
GP + I+ G T+ L + + NGGIY+GFKVNH+DISP FAG+LMS TNC
Sbjct: 372 LGPAIALIVASYTGCNSWLTVTILTIGVGLNGGIYSGFKVNHLDISPRFAGVLMSFTNCL 431
Query: 408 ANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYWDK-N 466
AN+ G+LAP +G ++ W++VF++SA +YI CA Y +FSSG++Q WD +
Sbjct: 432 ANLAGLLAPITAGYII--VSPPSQAKWRIVFMISAGVYIVCALFYAIFSSGQRQPWDNPD 489
Query: 467 GGEGRMER 474
E + E+
Sbjct: 490 KDEDKNEK 497
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195380511|ref|XP_002049014.1| GJ21355 [Drosophila virilis] gi|194143811|gb|EDW60207.1| GJ21355 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 239/469 (50%), Positives = 323/469 (68%), Gaps = 28/469 (5%)
Query: 20 LKPKPKGLGY-RHWTTFMLFIGMANAYVMRTNMSVAIVAMTNP---------------ES 63
L +P+G R++ TFMLF+GMANAYVMRTNMSVAIVAM N +
Sbjct: 25 LHDRPRGWATTRYFVTFMLFLGMANAYVMRTNMSVAIVAMVNHTAIQQGEEILDDECGDR 84
Query: 64 SIHVDSKS-----WSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVF 118
+ VD+ WS+ +G +LSSFFYGYV+TQIP G+L K + + + L +GM++N+VF
Sbjct: 85 ELEVDNGEDGEFPWSSSLQGYILSSFFYGYVITQIPFGILAKKYGALRFLGWGMLINSVF 144
Query: 119 ALLVPVSSQS--IWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQF 176
A +VPV+++ ++ L AVRFIQG+GEGPIVPCTHA+LAKWIPP ERS +G VY+GAQF
Sbjct: 145 AFVVPVAAREGGVYGLCAVRFIQGLGEGPIVPCTHALLAKWIPPNERSRMGAAVYAGAQF 204
Query: 177 GTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEY 236
GTIIS P+SG LA F GWP+IFYVFGV+ IW + F+ L+YE+P S R+ EK Y
Sbjct: 205 GTIISMPLSGLLAEYGFSGGWPSIFYVFGVVGTIWSIAFLILIYEDPSSHPRIDEREKRY 264
Query: 237 ILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLH 296
I S++G D+I K+ IP+ I+KS PF +IL AHMG N+GYETLMT LPT++K+VL
Sbjct: 265 INDSLWGTDVI---KSPPIPFKAIIKSLPFYAILFAHMGHNYGYETLMTELPTYMKQVLR 321
Query: 297 FDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFII 356
F + NGL+S+ PY+AM++ S ++ +AD+ I K + ATRK++ SIG+YGPGL I
Sbjct: 322 FSLKSNGLLSSLPYLAMWLFSMFISVVADWMISSKRFTLTATRKIINSIGQYGPGLALIA 381
Query: 357 PVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAP 416
G T+ L + + NGGIY+GFK+NH+D++P FAG LM+ITNCSAN+ G+LAP
Sbjct: 382 ASYTGCDRALTLAILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMAITNCSANLAGLLAP 441
Query: 417 TISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYWDK 465
+G L+N M W++VF ++A +YI C T Y +F SG +Q+WD
Sbjct: 442 IAAGNLIN--NKPTMGQWQIVFFIAAFVYIICGTFYNIFGSGERQFWDN 488
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195171663|ref|XP_002026623.1| GL11822 [Drosophila persimilis] gi|198461550|ref|XP_001362044.2| GA20823 [Drosophila pseudoobscura pseudoobscura] gi|194111549|gb|EDW33592.1| GL11822 [Drosophila persimilis] gi|198137376|gb|EAL26624.2| GA20823 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 240/475 (50%), Positives = 319/475 (67%), Gaps = 26/475 (5%)
Query: 18 KILKPKPKGL-GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNP--------------- 61
K L+ P G R++ TFMLF+GMANAYVMRTNMSVAIVAM N
Sbjct: 14 KDLEKPPLGFFATRYFVTFMLFLGMANAYVMRTNMSVAIVAMVNHTAIKTTDEEIVDECG 73
Query: 62 ESSIHVDSKS-----WSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNA 116
+ + +D WS+ +G +LSSFFYGYV+TQIP G+L K S + L YGM+VN+
Sbjct: 74 DRDLPIDDSQDGEFVWSSSLQGYILSSFFYGYVITQIPFGILAKRFGSLRFLGYGMLVNS 133
Query: 117 VFALLVPVSSQS--IWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGA 174
VFA LVPV+++ +W L AVRFIQG+GEGPIVPCTHA+LAKWIPP ERS +G VY+GA
Sbjct: 134 VFAFLVPVAARQGGVWGLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGA 193
Query: 175 QFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEK 234
QFGTIIS P+SG LA F GWP+IFYVFG++ +W + F+ VYE+P + EK
Sbjct: 194 QFGTIISMPLSGLLAEYGFDGGWPSIFYVFGIVGTVWSIAFLIFVYEDPTVHPSIDEREK 253
Query: 235 EYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEV 294
+YI S++G D++ K IP+ I+KS PF +IL AHMG N+GYETLMT LPT++K+V
Sbjct: 254 KYINDSLWGTDVV---KNPPIPFKAILKSMPFYAILFAHMGHNYGYETLMTELPTYMKQV 310
Query: 295 LHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMF 354
L F + NGL+S+ PY+AM++ S ++ +AD+ I K S TRKL+ SIG+YGPG+
Sbjct: 311 LRFSLKSNGLLSSLPYLAMWLFSMFISVIADWMISSKRFSHTVTRKLINSIGQYGPGIAL 370
Query: 355 IIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGML 414
I G T+ L + + NGGIY+GFK+NH+D++P FAG LM+ITNCSAN+ G+L
Sbjct: 371 IAASYTGCDRALTLAILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMAITNCSANLAGLL 430
Query: 415 APTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYWDKNGGE 469
AP +G L++ M W++VF ++A +YI C T Y +F SG +QYWD G+
Sbjct: 431 APIAAGNLISDQSKPIMGQWQIVFFIAAFVYIICGTFYNIFGSGERQYWDNPEGD 485
|
Source: Drosophila persimilis Species: Drosophila persimilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195057652|ref|XP_001995299.1| GH22706 [Drosophila grimshawi] gi|193899505|gb|EDV98371.1| GH22706 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/470 (50%), Positives = 324/470 (68%), Gaps = 27/470 (5%)
Query: 18 KILKPKPKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNP---------------E 62
++ KP+ R++ TFMLF+GMANAYVMRTNMSVAIVAM N +
Sbjct: 12 EVEKPQLGWATTRYFVTFMLFLGMANAYVMRTNMSVAIVAMVNHTAIQHGEEILDDECGD 71
Query: 63 SSIHVDSK-----SWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAV 117
+ VD+ +W++ +G +LSSFFYGYV+TQIP G+L K + + + L +GM+VN+V
Sbjct: 72 RELEVDNGEDGEFAWNSSLQGYILSSFFYGYVITQIPFGILAKKYGAMRFLGWGMLVNSV 131
Query: 118 FALLVPVSSQS--IWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQ 175
FA LVPV+++ ++ L AVRFIQG+GEGPIVPCTHA+LAKW+PP ERS +G VY+GAQ
Sbjct: 132 FAFLVPVAAREGGVYGLCAVRFIQGLGEGPIVPCTHALLAKWVPPNERSRMGAAVYAGAQ 191
Query: 176 FGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKE 235
FGTIIS P+SG LA F GWP+IFYVFGV+ +W + F+ LV+E+P + R+ EK
Sbjct: 192 FGTIISMPLSGLLAEYGFSGGWPSIFYVFGVVGTLWSIAFLILVFEDPSTHPRIDEREKR 251
Query: 236 YILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVL 295
YI S++G D+I K+ IP+ I+KS PF +IL AHMG N+GYETLMT LPT++K+VL
Sbjct: 252 YINDSLWGTDVI---KSPPIPFKAIMKSLPFYAILFAHMGHNYGYETLMTELPTYMKQVL 308
Query: 296 HFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFI 355
F + NG++SA PY+AM++ S ++ +AD+ I K S ATRK++ SIG+YGPGL I
Sbjct: 309 RFSLKSNGMLSALPYLAMWLFSMFISVVADWMISSKRFSLTATRKIINSIGQYGPGLALI 368
Query: 356 IPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLA 415
G T+ L + + NGGIY+GFK+NH+D++P FAG LM+ITNCSAN+ G+LA
Sbjct: 369 AASYTGCDRALTLAILTVGVGLNGGIYSGFKINHLDLTPRFAGFLMAITNCSANLAGLLA 428
Query: 416 PTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYWDK 465
P +G L+N M W++VF ++A +YI C T Y +F SG +Q+WD
Sbjct: 429 PIAAGNLIN--NKPTMGQWQIVFFIAAFVYIICGTFYNIFGSGVRQFWDN 476
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 520 | ||||||
| FB|FBgn0024315 | 529 | Picot "Picot" [Drosophila mela | 0.75 | 0.737 | 0.531 | 3.4e-126 | |
| UNIPROTKB|O61369 | 483 | Picot "Putative inorganic phos | 0.748 | 0.805 | 0.532 | 1e-124 | |
| FB|FBgn0029727 | 479 | CG6978 [Drosophila melanogaste | 0.815 | 0.885 | 0.487 | 2.6e-109 | |
| FB|FBgn0030452 | 559 | MFS10 "Major Facilitator Super | 0.326 | 0.304 | 0.438 | 4e-83 | |
| FB|FBgn0010651 | 497 | l(2)08717 "lethal (2) 08717" [ | 0.740 | 0.774 | 0.378 | 1.4e-78 | |
| FB|FBgn0033234 | 477 | CG8791 [Drosophila melanogaste | 0.828 | 0.903 | 0.350 | 1e-77 | |
| FB|FBgn0034394 | 491 | CG15096 [Drosophila melanogast | 0.825 | 0.873 | 0.373 | 3.4e-77 | |
| FB|FBgn0034392 | 497 | MFS15 "Major Facilitator Super | 0.832 | 0.871 | 0.377 | 1.5e-74 | |
| UNIPROTKB|F1RQG9 | 497 | SLC17A5 "Uncharacterized prote | 0.734 | 0.768 | 0.356 | 3.7e-72 | |
| UNIPROTKB|E2R8R4 | 495 | SLC17A5 "Uncharacterized prote | 0.823 | 0.864 | 0.349 | 4.1e-72 |
| FB|FBgn0024315 Picot "Picot" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1127 (401.8 bits), Expect = 3.4e-126, Sum P(2) = 3.4e-126
Identities = 211/397 (53%), Positives = 286/397 (72%)
Query: 71 SWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQS-- 128
+WS+ +G +LSSFFYGYV+TQIP G+L K + S + L YGM++N+VFA LVPV+++
Sbjct: 102 AWSSALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFAFLVPVAARGGG 161
Query: 129 IWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYL 188
+W L AVRFIQG+GEGPIVPCTHA+LAKWIPP ERS +G VY+GAQFGTIIS P+SG L
Sbjct: 162 VWGLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFGTIISMPLSGLL 221
Query: 189 A-YGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDII 247
A YG F GWP+IFYVFG++ +W + F+ V+E+P S + EK+YI S++G D++
Sbjct: 222 AEYG-FDGGWPSIFYVFGIVGTVWSIAFLIFVHEDPSSHPTIDEREKKYINDSLWGTDVV 280
Query: 248 EDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISA 307
K+ IP+ I+KS PF +IL AHMG N+GYETLMT LPT++K+VL F + NGL+S+
Sbjct: 281 ---KSPPIPFKAIIKSLPFYAILFAHMGHNYGYETLMTELPTYMKQVLRFSLKSNGLLSS 337
Query: 308 TPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPT 367
PY+AM++ S ++ +AD+ I K S ATRKL+ SIG+YGPG+ I G T
Sbjct: 338 LPYLAMWLFSMFISVVADWMISSKRFSHTATRKLINSIGQYGPGVALIAASYTGCDRALT 397
Query: 368 IVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQ 427
+ L + + NGGIY+GFK+NH+D++P FAG LMSITNCSAN+ G+LAP +G L++
Sbjct: 398 LAILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMSITNCSANLAGLLAPIAAGHLISDPS 457
Query: 428 HDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYWD 464
M W++VF ++A +YI C T Y +F SG +QYWD
Sbjct: 458 KPMMGQWQIVFFIAAFVYIICGTFYNIFGSGERQYWD 494
|
|
| UNIPROTKB|O61369 Picot "Putative inorganic phosphate cotransporter" [Drosophila ananassae (taxid:7217)] | Back alignment and assigned GO terms |
|---|
Score = 1132 (403.5 bits), Expect = 1.0e-124, Sum P(2) = 1.0e-124
Identities = 211/396 (53%), Positives = 285/396 (71%)
Query: 72 WSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQS--I 129
W+ +G +LSSFFYGYV+TQIP G+L K + S + L YGM++N+VFA LVPV+++ +
Sbjct: 57 WNAALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFAFLVPVAAREGGV 116
Query: 130 WCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLA 189
W L AVRFIQG+GEGPIVPCTHA+LAKWIPP ERS +G VY+GAQFGTIIS P+SG LA
Sbjct: 117 WGLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFGTIISMPLSGLLA 176
Query: 190 -YGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIE 248
YG F GWP+IFYVFG++ +W + F+ VYE+P + ++ EK+YI S++G D+I
Sbjct: 177 EYG-FDGGWPSIFYVFGIVGTVWSIAFLIFVYEDPSTHPKIDEREKKYINESLWGTDVI- 234
Query: 249 DLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISAT 308
K+ IP+ IVKS PF +IL AHMG N+GYETLMT LPT++K+VL F + NGL+S+
Sbjct: 235 --KSPPIPFKSIVKSLPFYAILFAHMGHNYGYETLMTELPTYMKQVLRFSLKSNGLLSSL 292
Query: 309 PYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTI 368
PY+AM++ S ++ +AD+ I K S ATRK++ SIG+YGPGL I G T+
Sbjct: 293 PYLAMWLLSMFISVIADWMISSKRFSLTATRKIINSIGQYGPGLALIAASYTGCDRALTL 352
Query: 369 VCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQH 428
L + + NGGIY+GFK+NH+D++P FAG LMSITNCSAN+ G+LAP +G L++
Sbjct: 353 AILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMSITNCSANLAGLLAPIAAGNLISDPSK 412
Query: 429 DEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYWD 464
M W++VF ++A +YI C T Y +F SG +Q+WD
Sbjct: 413 PVMGQWQIVFFIAAFVYIICGTFYNIFGSGERQFWD 448
|
|
| FB|FBgn0029727 CG6978 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1080 (385.2 bits), Expect = 2.6e-109, P = 2.6e-109
Identities = 219/449 (48%), Positives = 303/449 (67%)
Query: 30 RHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKS----------WSTVERGL 79
R + MLF GMANAYVMRTNMSVAIVAM N + H S + WS +G
Sbjct: 41 RFFVVLMLFSGMANAYVMRTNMSVAIVAMVNHTAISHTKSSTQSKERDGDFEWSYKLQGY 100
Query: 80 LLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQS--IWCLAAVRF 137
+LSSFFYGYV+TQIP GL+ K + + L +GM++N++ A +P+S++S + L VRF
Sbjct: 101 ILSSFFYGYVITQIPFGLMIKYYGARHFLGWGMMINSLAAFFIPISARSGGVVGLCVVRF 160
Query: 138 IQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGW 197
IQG+GEGPIVPC+H++LA+W+PP ERS G VY+GAQFGTI+S P+SG LA+ F GW
Sbjct: 161 IQGLGEGPIVPCSHSLLAQWVPPNERSLAGAAVYAGAQFGTIVSMPLSGLLAHYGFDGGW 220
Query: 198 PAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPW 257
P+IFY+FG+ IWC++FI LV E+P R+S E+ +I+ +I+ E S IP+
Sbjct: 221 PSIFYIFGLFSTIWCIIFICLVQESPAVSTRISEAERRHIMEAIWQAQPEE---RSRIPF 277
Query: 258 GDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITS 317
I KS PF +ILVAH G N+GYETLMTMLPT++ VL+ ++ NG+IS+ PY+AM+I +
Sbjct: 278 LGIAKSPPFYAILVAHAGHNYGYETLMTMLPTYMYRVLNVNIRTNGIISSLPYLAMWILA 337
Query: 318 SVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTP---TIVCLILA 374
V LAD IR+ T RKLM S+G+YGP + I +GF H T V IL
Sbjct: 338 IVFGILADCLIRRNFSIT-VVRKLMNSLGQYGPAVALIS---VGFVHHSLWLTSVIFILG 393
Query: 375 MACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSW 434
M NG IY GFK+NH+D+SP FAG+L+S+TNC AN+VG++AP ++G +++ + +W
Sbjct: 394 MGLNGAIYCGFKINHLDLSPRFAGLLISVTNCVANLVGLMAPMVAGHVID--PKPSVENW 451
Query: 435 KVVFLVSAVLYITCATVYLLFSSGRKQYW 463
++VF ++A ++I A+ Y +F+SG KQ W
Sbjct: 452 RIVFYIAAGVFIFTASFYNVFASG-KQQW 479
|
|
| FB|FBgn0030452 MFS10 "Major Facilitator Superfamily Transporter 10" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 422 (153.6 bits), Expect = 4.0e-83, Sum P(3) = 4.0e-83
Identities = 75/171 (43%), Positives = 114/171 (66%)
Query: 72 WSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQ-SIW 130
W +GL+L SFFYGYVLTQ+P G + + + K+ YG+++ AVF L+ P+++ +
Sbjct: 137 WDEATQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLITAVFTLITPLAAHWDLP 196
Query: 131 CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAY 190
L VR ++GMGEG P HA+LA WIPP ER+ IVY+G+ GT+IS P++G+L
Sbjct: 197 LLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGSNIGTVISMPLAGWLCS 256
Query: 191 GTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSI 241
FL GWP+ FY+FG++ ++W + +++LVY+ P R+S E+EYI S+
Sbjct: 257 LDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPSDHPRISESEREYIERSL 307
|
|
| FB|FBgn0010651 l(2)08717 "lethal (2) 08717" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 730 (262.0 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
Identities = 148/391 (37%), Positives = 224/391 (57%)
Query: 76 ERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAA 134
E+G L +SFF+GY++TQ+P G + + + + ML YG+ + A+ +L P+S Q W LA
Sbjct: 89 EKGNLQASFFFGYIVTQVPGGYIAQRYGAKTMLMYGLGIAALITMLSPMSLQFGWVALAV 148
Query: 135 VRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFL 194
+RF+ G+ +G + P THA+LAKW P ER LG + YSGAQFGT++ SG++A
Sbjct: 149 MRFVMGLAQGAVHPATHALLAKWSPADERGMLGTLCYSGAQFGTVVMLATSGFIADSVL- 207
Query: 195 QGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASS 254
GWP+IFY+ G IW V + P + +S E +YI S G + K +
Sbjct: 208 -GWPSIFYLGGACGFIWMVFWYLFSASTPEEHRLISPGELKYITDSRSDGKMQSAEKLAP 266
Query: 255 IPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMF 314
PW I S PFLS+LV H FGY L+ +PT++K++ H D+ K L+S+ PY+ M
Sbjct: 267 TPWKAIFSSLPFLSLLVVHCTHIFGYWLLLMQIPTYMKKIYHVDIKKGALLSSLPYMVML 326
Query: 315 ITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLI-L 373
+ S +L+ +K+ +S RK+ SIG + P L I + + P V L+ L
Sbjct: 327 LLSFFFVWLSKVLQKKEGMSLSFNRKIFNSIGHWIPMLSLIALGYVPADNAPLAVTLLTL 386
Query: 374 AMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLS 433
+ +G Y GF+VNHID+SP +AG LM ITNC+ANV+ +AP I G ++ +
Sbjct: 387 TVGISGATYLGFQVNHIDLSPNYAGTLMGITNCAANVMSGIAPVIVGQIV--VDETSVTE 444
Query: 434 WKVVFLVSAVLYITCATVYLLFSSGRKQYWD 464
W++VFL++A Y ++++F Q+WD
Sbjct: 445 WRLVFLLAAAFYFLGNLLFVIFGRTEVQWWD 475
|
|
| FB|FBgn0033234 CG8791 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 155/442 (35%), Positives = 250/442 (56%)
Query: 26 GLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFF 85
GLG RHW +LF+GM Y R N+S AIV MT +S+ +W T ++ L+LSSFF
Sbjct: 14 GLGVRHWQAVLLFVGMMINYFQRVNISAAIVPMT--QSTAGAPFYTWDTSDKSLILSSFF 71
Query: 86 YGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEG 144
+GYV++Q+P GLL K + +L + + P++++S W + +R + G+ +G
Sbjct: 72 WGYVVSQVPAGLLAKRFGAKLVLGLATAIGGILCFFHPIAAKSGWQSICVLRVLTGLVQG 131
Query: 145 PIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVF 204
+ PC H +LAKW+P ER L VYSGAQFGT + SG++ + GWP +FY+
Sbjct: 132 TVYPCVHTLLAKWVPRTERGLLTTGVYSGAQFGTAVILVTSGFIFESSM--GWPGLFYLS 189
Query: 205 GVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSG 264
G + L W +LF + P + R+S E EYI S+ G + ++ +PW I +S
Sbjct: 190 GGLSLAWALLFFWQAANEPVTASRISKGEVEYI-ESLTGSN--SSSQSMPVPWMSIFRSP 246
Query: 265 PFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLA 324
F +L AH G +G+ TL+T +PT++ VL ++ N +S+ PY AM + V++ ++
Sbjct: 247 AFYGLLAAHCGFTWGFYTLLTEMPTYMSMVLQLNVKSNAFLSSLPYFAMGLLCFVVSPIS 306
Query: 325 DYFIRKKILSTGATRKLMTSIGEYGPGLMFI-IPVILGFTHTPTIVCLILAMACNGGIYA 383
D I + +S RKL SIG++GP I + + T I+ L LA+ N G
Sbjct: 307 DLLINRGTISITTARKLFNSIGQWGPMACLIGLGYMTADEKTWAILLLTLAVGINAGCSC 366
Query: 384 GFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAV 443
G+ +NHID+SP FAG +M +TN A V ++AP + G +++ ++ W++VF ++
Sbjct: 367 GYLINHIDLSPNFAGPMMGVTNGIAGVTSIIAPLVVGAIVS--DEEDPSQWRMVFFITGG 424
Query: 444 LYITCATVYLLFSSGRKQYWDK 465
+Y+ C T++++F Q W++
Sbjct: 425 IYLVCNTIFVIFGKATIQIWNE 446
|
|
| FB|FBgn0034394 CG15096 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 169/452 (37%), Positives = 258/452 (57%)
Query: 26 GLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVD--SKSWSTVERGLLLSS 83
GLG RH+ +LF + AY R N+SVA+VAMT+ +S++ D +WS + LLLSS
Sbjct: 32 GLGVRHFQVLLLFFALTVAYGCRVNLSVAVVAMTDA-ASVNPDFPEYNWSEKTKSLLLSS 90
Query: 84 FFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQ-SIWCLA-AVRFIQGM 141
FF+GYV+TQ+P G L + + M+ G+ + ++ +L P+ ++ W L A+R ++G+
Sbjct: 91 FFWGYVITQVPAGQLARKYGGKVMILSGLAICSILNILTPICAKIGGWQLVCALRVVEGL 150
Query: 142 GEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIF 201
+G + P TH IL++W PP ER+ LG YSG QFGTI+ SG +A GWP+IF
Sbjct: 151 CQGVVFPSTHTILSQWAPPKERATLGTCAYSGNQFGTILMLATSGVIAASPI--GWPSIF 208
Query: 202 YVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYS----IFGGDIIEDLKAS-SIP 256
Y+ G I +W V++ F +P K +S EEK+ I S + GG E K P
Sbjct: 209 YISGGIGCVWSVVYFFFGAGSPQECKSISAEEKKLIEMSQADEVSGGQ--EQPKEQLPTP 266
Query: 257 WGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFIT 316
W S FL ++V+H N+G+ TL+T +P+++K +L D+ N L+S+ PY+ MF
Sbjct: 267 WLSFFTSPAFLVLIVSHSVHNWGFWTLLTEIPSYMKNILGKDIKSNALLSSLPYVCMFAM 326
Query: 317 SSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTP----TIVCLI 372
S V + ++ + +S +RKL SIG + P + V LG+ + +V L
Sbjct: 327 SFVFSSISAQLNNRNCISRSTSRKLFNSIGLWIP---MVTLVGLGYVNPDQSELAVVLLC 383
Query: 373 LAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEML 432
+ NG Y GF NHID+SP FAGILM ITN AN++ ++AP I G ++ +HD
Sbjct: 384 FTVGMNGATYLGFNTNHIDLSPNFAGILMGITNGVANIMSIIAPLIVGFIVT-NEHDPE- 441
Query: 433 SWKVVFLVSAVLYITCATVYLLFSSGRKQYWD 464
W++VF ++A Y+ T+Y++F Q W+
Sbjct: 442 QWRIVFFIAAGFYLVGNTLYVIFGKANVQPWN 473
|
|
| FB|FBgn0034392 MFS15 "Major Facilitator Superfamily Transporter 15" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 169/448 (37%), Positives = 256/448 (57%)
Query: 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSI-HVDSKSWSTVERGLLLSSFFY 86
G RH ++F G+A AY +R N+SVAIVAMT+ +S W+ + LLSSFF+
Sbjct: 25 GVRHLQCILVFFGLAVAYSLRVNLSVAIVAMTDRNASNPDFPEFDWNESTKSYLLSSFFW 84
Query: 87 GYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSS-QSIWCLAAV-RFIQGMGEG 144
GYV+TQIP G L+ + + ML YG+++ + ALL P + W + V R +QG+ +G
Sbjct: 85 GYVVTQIPGGYLSAIYGAKYMLFYGVLICSCLALLTPFCAVNGGWTVVVVLRAVQGLCQG 144
Query: 145 PIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVF 204
I P TH L+KW P ER L G YSG+QFGT++ VSGY+A + GWP+ FY+
Sbjct: 145 VIFPSTHTFLSKWAPAEERGRLVGYTYSGSQFGTVVMLSVSGYIASSSL--GWPSTFYIP 202
Query: 205 GVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFG---GDI-IEDLKASSIPWGDI 260
G + ++W ++++L P ++ E+ +I S D E+ PW I
Sbjct: 203 GCVGIVWSFVWLYLCSSTPAQHPTITPNERRFIESSGQARRPSDAGREEQPRPPTPWWRI 262
Query: 261 VKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVL 320
S PFL +++AH N+G+ TL+T +PTF+K VL D+ NG +SA PY AM + + V
Sbjct: 263 FTSVPFLVLVLAHCANNWGFWTLLTEIPTFMKNVLGMDIKNNGPLSALPYFAMILLTCVF 322
Query: 321 NYLADYFIRK-KILSTGATRKLMTSIGEYGPGLMFI-IPVIL-GFTHTPTIVCLILA-MA 376
+L+D ++ ++ G +RK ++G + P L I + I G + + L+ A +A
Sbjct: 323 IWLSDTLKQRGTVIPLGFSRKFFNTLGMWLPMLALIGLGYITEGEANVRLAIGLLTAAVA 382
Query: 377 CNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKV 436
N Y GF VNHID+SP +AG LM ITNC+AN + +LAP I GL++ W + + W++
Sbjct: 383 TNSATYLGFHVNHIDLSPNYAGTLMGITNCAANFMSILAPLIVGLIV-WDETNPA-QWRI 440
Query: 437 VFLVSAVLYITCATVYLLFSSGRKQYWD 464
VF +A +Y +++LF R Q W+
Sbjct: 441 VFFFTAFVYFIGNLLFMLFGRTRVQPWN 468
|
|
| UNIPROTKB|F1RQG9 SLC17A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
Identities = 141/395 (35%), Positives = 231/395 (58%)
Query: 72 WSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQ-SIW 130
W+ +G +L SFFYGY++TQIP G + +L +G++ +VF LL P+++ +
Sbjct: 103 WNAETQGWILGSFFYGYIITQIPGGYIASRSGGKLLLGFGILGTSVFTLLTPLAADFGVG 162
Query: 131 CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYS--GAQFGTIISYPVSGYL 188
L A+R ++G+GEG P HA+ + W PP ERS L I Y+ GAQ GT++S P+SG +
Sbjct: 163 ALIALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAVLGAQLGTVVSLPLSGII 222
Query: 189 AYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIE 248
+ +L W +FY+FG++ +IW +L+ +LV + P + + +S EKEYIL S+ + +
Sbjct: 223 CF--YLN-WTYVFYLFGLVGIIWFILWTWLVSDTPDTHRTISPYEKEYILSSL--RNQLS 277
Query: 249 DLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISAT 308
K S+PW ++KS P +I+VAH N+ + TL+T+LPT++KEVL F++ +NG +SA
Sbjct: 278 SQK--SVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAV 335
Query: 309 PYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTI 368
PY ++ + AD K ST R++ + IG +GP + + +G ++ +
Sbjct: 336 PYFGCWVCMILSGQAADNLRAKWNFSTLCVRRVFSLIGMFGPAVFLVAAGFIGCDYSLAV 395
Query: 369 VCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQH 428
L ++ G +GF ++H+DI+P +AGIL+ ITN A + GM+ P I+ L
Sbjct: 396 AFLTISTTLGGFCSSGFSISHLDIAPSYAGILLGITNTFATIPGMIGPVIARSLT---PE 452
Query: 429 DEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYW 463
+ + W+ VF ++A L + A + LF G Q W
Sbjct: 453 NTIREWQTVFCIAAALNVFGAIFFTLFGKGEVQGW 487
|
|
| UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 162/464 (34%), Positives = 259/464 (55%)
Query: 30 RHWTTFMLFIGMANAYVMRTNMSVAIVAM-----------TNPESSIH------VDSKS- 71
R+ + F G Y +R N+SVA+V M T+ E + H + +++
Sbjct: 39 RYNLAVLAFFGFFVLYALRVNLSVALVDMVDSNTTLADNRTSKECAEHSAPIKVLHNQTG 98
Query: 72 ----WSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQ 127
W +G +L SFFYGY++TQIP G + +L +G++ AVF L P+++
Sbjct: 99 KRYQWDAETQGWILGSFFYGYIITQIPGGYIASKVGGKLLLGFGILGTAVFTLFTPIAAD 158
Query: 128 -SIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG 186
+ L +R ++G+GEG P HA+ + W PP ERS L I Y+GAQ GT+IS P+SG
Sbjct: 159 FGVGALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSG 218
Query: 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDI 246
+ F W +FY+FG++ +IW +L+IFLV E P + K +S +EKEYIL S+ +
Sbjct: 219 IIC---FYMNWTYVFYLFGIVGIIWFILWIFLVSETPETHKTISRQEKEYILSSL--KNQ 273
Query: 247 IEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLIS 306
+ K S+PW ++KS P +I+VAH N+ + TL+T+LPT++KE+L F++ +NGL+S
Sbjct: 274 LSSQK--SVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGLLS 331
Query: 307 ATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTP 366
A PY ++ + AD K ST R++ + IG GP + + +G ++
Sbjct: 332 ALPYFGCWLCMILSGQAADNLRAKWNFSTICVRRVFSLIGMIGPAVFLVAAGFIGCDYSL 391
Query: 367 TIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWF 426
+V L ++ G +GF +NH+DI+P +AGIL+ ITN A + GM+ P I+ L
Sbjct: 392 AVVFLTISTTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMVGPVIAKSLT--- 448
Query: 427 QHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYW---DKNG 467
+ + W+ VF ++A + + A + LF+ G Q W D++G
Sbjct: 449 PDNTIREWQTVFYIAAAINVFGAIFFSLFAKGEVQNWALDDRHG 492
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9NRA2 | S17A5_HUMAN | No assigned EC number | 0.3252 | 0.8826 | 0.9272 | yes | N/A |
| Q8BN82 | S17A5_MOUSE | No assigned EC number | 0.3170 | 0.8826 | 0.9272 | yes | N/A |
| Q8GX78 | ANTR2_ARATH | No assigned EC number | 0.3157 | 0.775 | 0.7449 | yes | N/A |
| Q9V7S5 | PICO_DROME | No assigned EC number | 0.5085 | 0.8519 | 0.8374 | yes | N/A |
| Q652N5 | PHT44_ORYSJ | No assigned EC number | 0.325 | 0.7692 | 0.6768 | yes | N/A |
| O61369 | PICO_DROAN | No assigned EC number | 0.5176 | 0.8211 | 0.8840 | N/A | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 520 | |||
| TIGR00894 | 465 | TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph | 1e-110 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-33 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 3e-31 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 3e-30 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 5e-18 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 2e-13 | |
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 4e-12 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 3e-11 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 7e-10 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-06 | |
| TIGR00712 | 438 | TIGR00712, glpT, glycerol-3-phosphate transporter | 3e-06 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 6e-05 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 7e-05 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 1e-04 | |
| COG0477 | 338 | COG0477, ProP, Permeases of the major facilitator | 1e-04 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 2e-04 | |
| TIGR00711 | 485 | TIGR00711, efflux_EmrB, drug resistance transporte | 5e-04 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 0.003 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 0.004 |
| >gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Score = 335 bits (860), Expect = e-110
Identities = 155/454 (34%), Positives = 227/454 (50%), Gaps = 29/454 (6%)
Query: 33 TTFMLFIGMANAYVMRTNM------SVAIVAMTNPESSIHVDSKS--------------W 72
+F LF+ + S+ +VAM N E+S + S W
Sbjct: 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKW 73
Query: 73 STVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQ-SIWC 131
S +GL+LSS FYG ++ QIP+G L + + GM +++V ++++P ++ I
Sbjct: 74 SGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIAL 133
Query: 132 LAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYG 191
+ R IQG+ +G + P TH I+ KW PP ERS L G+ SG Q GT I P+SG+L
Sbjct: 134 VVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCE- 192
Query: 192 TFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLK 251
GWP IFYVFG++ W +L+ ++P +S EK+YI S+ G
Sbjct: 193 -SWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGS---T 248
Query: 252 ASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYI 311
S+P I KS P +I A G + Y L T LPTF+ VL +NGL+S+ PY+
Sbjct: 249 RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYL 308
Query: 312 AMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCL 371
++ S YLAD+ K LS A RK+ IG GPG+ L TI+ L
Sbjct: 309 FAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIIL 368
Query: 372 ILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEM 431
LA A + G AG +N +D++P F G + IT + G++A T++G +L+ D
Sbjct: 369 TLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILS---QDSK 425
Query: 432 LSWKVVFLVSAVLYITCATVYLLFSSGRKQYWDK 465
W +VFL+ A + I C YL+F S +Q W K
Sbjct: 426 NVWLIVFLIMAFVNILCVIFYLIFGSAERQDWAK 459
|
[Transport and binding proteins, Anions]. Length = 465 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 8e-33
Identities = 95/427 (22%), Positives = 175/427 (40%), Gaps = 81/427 (18%)
Query: 34 TFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQI 93
+LF+G + + R +S A+ + + S + GL++S+F GY L +
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLL--------AEDLGLSASQAGLIVSAFSLGYALGSL 52
Query: 94 PIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAI 153
G L+ ++L G+++ A+ +LL+ +S S+W L RF+ G+G G + P A+
Sbjct: 53 LAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS-SLWLLLVGRFLLGLGGGALYPAAAAL 111
Query: 154 LAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCV 213
+A+W PP ER G+ +G G ++ + G LA GW +F + ++ L+ +
Sbjct: 112 IAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE---SLGWRWLFLILAILGLLLAL 168
Query: 214 LFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAH 273
L +FL+ L + +A
Sbjct: 169 LLLFLL--------------------------------------------RLLLLLALAF 184
Query: 274 MGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKIL 333
+FGY L+T LP +L+EVL + GL+ + + + + + L+D R+++L
Sbjct: 185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLL 244
Query: 334 STGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDIS 393
GL+ +L P++ L++A+ G + ++
Sbjct: 245 LLI--------------GLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLA 290
Query: 394 PCFA-----GILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITC 448
A G + N ++ G L P ++GLLL + + VFL+ A L +
Sbjct: 291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL------DTGGYGGVFLILAALALLA 344
Query: 449 ATVYLLF 455
A + LL
Sbjct: 345 ALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 3e-31
Identities = 93/381 (24%), Positives = 160/381 (41%), Gaps = 36/381 (9%)
Query: 37 LFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIG 96
LF+ A + R+ + A+ + S E GLLL++F GY L Q G
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLA-------EDLGISPTEIGLLLTAFSLGYALAQPLAG 53
Query: 97 LLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILAK 156
L+ ++L G+++ A+ LL + + S+W L +R +QG+G G + P A++A
Sbjct: 54 RLSDRFGRRRVLLIGLLLFALGLLL-LLFASSLWLLLVLRVLQGLGGGALFPAAAALIAD 112
Query: 157 WIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFI 216
W PP ER G++ +G G + + G LA L GW A F + ++ L+ VL
Sbjct: 113 WFPPEERGRALGLLSAGFGLGAALGPLLGGLLAS---LFGWRAAFLILAILALLAAVLAA 169
Query: 217 FLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQ 276
L+ P KR E+ A +P ++ P L +L+A +
Sbjct: 170 LLLPRPPPESKRPKPAEE---------------APAPLVPAWKLLLRDPVLWLLLALLLF 214
Query: 277 NFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTG 336
F + L+T LP + EVL + GL+ + I +L L+D G
Sbjct: 215 GFAFFALLTYLPLYQ-EVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRL--------G 265
Query: 337 ATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC- 395
R+L+ ++ + + + L + +V L+L G ++ D++P
Sbjct: 266 RRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKE 325
Query: 396 FAGILMSITNCSANVVGMLAP 416
G + N + ++ G L P
Sbjct: 326 ERGTASGLYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 3e-30
Identities = 96/394 (24%), Positives = 159/394 (40%), Gaps = 33/394 (8%)
Query: 73 STVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCL 132
S + G + S+F +GYV+ Q P G L + K LA +V+ VF L + + L
Sbjct: 27 SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-GAYVSL 85
Query: 133 AAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGT 192
+R + G E P P I+A W P ER+ I S G II P+ G++
Sbjct: 86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWI---L 142
Query: 193 FLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIE--DL 250
W F + GV+ +IW VL++ + + P + EE++YI + GG + E
Sbjct: 143 IHFSWQWAFIIEGVLGIIWGVLWLKFIPDPP-QKAKWLTEEEKYI---VVGGLLAEQQGK 198
Query: 251 KASSIPWGDI---VKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISA 307
S+ I +K + + N G +T PT+L + +++ G +++
Sbjct: 199 GPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMAS 258
Query: 308 TPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGF-THTP 366
P I FI + L+D +R+ A RK + ++ +L F T+
Sbjct: 259 LPGIVGFIGMILGGRLSDLLLRRGKSLVFA-RKT--------AIIAGLVLSLLMFATNYV 309
Query: 367 TIVCLILAMACNGGIYAGFKVNHIDISPCF-----AGILMSITNCSANVVGMLAPTISGL 421
I LA+ G G + AG+ + N N+ G++ P + G
Sbjct: 310 NIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGA 369
Query: 422 LLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLF 455
+ S+ +V A L + A YLL
Sbjct: 370 IA-----ATTGSFAGALMVVAALALIGALSYLLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 5e-18
Identities = 83/413 (20%), Positives = 148/413 (35%), Gaps = 46/413 (11%)
Query: 38 FIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGL 97
FIG A Y++R N ++A+ + V+ S + GLLLSSF Y +++ +G
Sbjct: 1 FIGYAAYYLVRKNFALAMPYL--------VEEIGLSKTDLGLLLSSFSIAYGISKFVMGS 52
Query: 98 LTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILAKW 157
++ + L G+++ A+ L S S+W +AA+ + G+ +G P + KW
Sbjct: 53 VSDRSNPRVFLPIGLILCAIVNLFF-GFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKW 111
Query: 158 IPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIF 217
ER G + P+ L L W +F V G+I +I L F
Sbjct: 112 FSRSERGTWVSFWNCSHNVGGGLLPPL--VLFGIAELYSWHWVFIVPGIIAIIVS-LICF 168
Query: 218 LVYENPHSDKRVSVEEKEYILYSIFGGDI-IEDLKASSIPWGDIVKSGPFLSILVAHMGQ 276
L+ + + E+ + E+L I ++ + L ++ +G
Sbjct: 169 LLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLN-KVL-WYIS-LGY 225
Query: 277 NFGYETLMTML---PTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKIL 333
F Y +L P +L + F K + + + + +L+D +
Sbjct: 226 VFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRG 285
Query: 334 STGATRKLMTSIGEYGPGLMFIIPVILGFTHTPT------IVCLI-LAMACNGGIYAGFK 386
L+ + +L + P ++CL L G
Sbjct: 286 PLAVFFM----------ALIIV--SLLVYWLNPAANPLMDLICLFALGFLVYGPQ-MLIG 332
Query: 387 VNHIDISPCFA-GILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVF 438
V +++P A G A + G+LA G L + F W F
Sbjct: 333 VIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF------GWAGAF 379
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-13
Identities = 76/387 (19%), Positives = 141/387 (36%), Gaps = 49/387 (12%)
Query: 78 GLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRF 137
G L++++ G L + LLT + ++L + + V LL + + S L R
Sbjct: 51 GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL-APSFAVLLLARA 109
Query: 138 IQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGW 197
+ G+ G A+ A+ +PPG+R +V++G T++ P+ +L G GW
Sbjct: 110 LAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL--GQLF-GW 166
Query: 198 PAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPW 257
A F V+ L+ +L L+ P S+ L
Sbjct: 167 RATFLAIAVLALLALLLLWKLL---PPSEIS-------------------GSLPGPLRTL 204
Query: 258 GDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITS 317
+++ L L+A G+ L T + FL+ V F + L+ IA FI +
Sbjct: 205 LRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGN 264
Query: 318 SVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMAC 377
+ LAD R+ +++ L+ + + L FT + L L
Sbjct: 265 LLGGRLADRGPRRALIA--------------ALLLLALALLALTFTGASPALALALLFLW 310
Query: 378 NGGIYAGFKVNHIDISPCF---AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSW 434
+ ++ A + S+ + N+ L + GL+L+ +
Sbjct: 311 GFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL------GY 364
Query: 435 KVVFLVSAVLYITCATVYLLFSSGRKQ 461
V A L + + LL + ++
Sbjct: 365 AATGWVGAALLLLALLLALLSARKDRR 391
|
Length = 394 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 4e-12
Identities = 79/372 (21%), Positives = 152/372 (40%), Gaps = 32/372 (8%)
Query: 10 IDPATKPPKILKPKPKGLGYRHWTT---FMLFIGMANAYVMRTNMSVAIVAMTNPESSIH 66
KP L Y+ W +FIG A Y+ R N ++A+ A+
Sbjct: 4 KFKPAKPKLRLPASEIDKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPAL-------- 55
Query: 67 VDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSS 126
++ S + G+L S+F Y +++ +G+L+ + +A+G++++A+ +L S
Sbjct: 56 IEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILF-GFS 114
Query: 127 QSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG 186
S++ A + + G +G P + W ER I + G ++ V+
Sbjct: 115 PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVAL 174
Query: 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEE-KEYILYSIFGGD 245
LA+ F GW A FY G+I +I ++ +FL+ + P S+ +EE + L
Sbjct: 175 -LAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEK 233
Query: 246 IIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTML---PTFLKEVLHFDMIKN 302
E L A I ++K+ + +A++ F Y + P +L EV F ++K
Sbjct: 234 ENEGLTAWQIFVKYVLKNKLIWLLALANV---FVYVVRYGINDWGPLYLSEVKGFSLVKA 290
Query: 303 GLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGF 362
+ +A + + +L+D + + R M I + + ++ +
Sbjct: 291 NWAISLFEVAGLPGTLLAGWLSDKLFKGR-------RGPMALI--FMLLITA---SLVLY 338
Query: 363 THTPTIVCLILA 374
P L+ A
Sbjct: 339 WLAPNGSYLLDA 350
|
Length = 448 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 78/385 (20%), Positives = 148/385 (38%), Gaps = 60/385 (15%)
Query: 69 SKSW--STVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSS 126
S W V+ G L S+ G + G L ++L + +++ +VF LL +
Sbjct: 44 SAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLC-ALA 102
Query: 127 QSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG 186
++ L +RF+ G+G G ++P +A+++++ P R G+++ G G + ++G
Sbjct: 103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG 162
Query: 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFI--------FLVYENPHSDKRVSVEEKEYIL 238
+L + GW ++FYV G+ L+ +L + FLV + P + +R+ +
Sbjct: 163 WLIP---VFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQ 219
Query: 239 YSIFGGDIIEDLKASSIPWGDIVK-------SGPFLSILVAHMGQNFGYETLMTMLPTFL 291
+ + KA+ + K + + + + + G L LP +
Sbjct: 220 AE--AQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLM 277
Query: 292 KEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPG 351
E L F + A I S + +LAD +
Sbjct: 278 VE-LGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL--------------LLL 322
Query: 352 LMFIIPVILGFT-HTPTIVCLILAMA--CNGGIYAGFKVNHIDISPCFAGILMSITNCSA 408
L + V++G T +PT++ L+ A+A G +G P T A
Sbjct: 323 LGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYP---------TAIRA 373
Query: 409 NVVG----------MLAPTISGLLL 423
VG ++ P ++G LL
Sbjct: 374 TGVGWAIGIGRLGAIIGPILAGYLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 7e-10
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 4/144 (2%)
Query: 78 GLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRF 137
GLLL+ + G ++ GLLT +L G+ + + + +SS +I L RF
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS-NITVLIIARF 59
Query: 138 IQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGW 197
+QG G + A++A PP ER G++ +G G ++ P+ G L FL GW
Sbjct: 60 LQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVL--AQFL-GW 116
Query: 198 PAIFYVFGVICLIWCVLFIFLVYE 221
A F ++ L +L FL+ E
Sbjct: 117 RAPFLFLAILALAAFILLAFLLPE 140
|
Length = 141 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 22/190 (11%)
Query: 269 ILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFI 328
+ +A G L LP +L E L + GL+ + + + L+D F
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 329 RKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPT--IVCLILAMACNGGIYAGFK 386
R+++L G L + ++L F + +V +L G ++
Sbjct: 61 RRRVLLIGL-------------LLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAA 107
Query: 387 VNHIDISP-CFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLY 445
D P G + + + + L P + GLL + F W+ FL+ A+L
Sbjct: 108 ALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLF------GWRAAFLILAILA 161
Query: 446 ITCATVYLLF 455
+ A + L
Sbjct: 162 LLAAVLAALL 171
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 5/158 (3%)
Query: 63 SSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHK-MLAYGMVVNAVFALL 121
+ S E GLLLS F G +L + GLL+ + +L G+++ A+ LL
Sbjct: 199 PLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLL 258
Query: 122 VPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIIS 181
+ ++ L A+ + G G G P + ++ PP R G+ + G +
Sbjct: 259 LALAPSLALLLVAL-LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALG 317
Query: 182 YPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLV 219
++G L G+ +F + + L+ +L + L
Sbjct: 318 PLLAGLLLDT---GGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 64/310 (20%), Positives = 122/310 (39%), Gaps = 17/310 (5%)
Query: 32 WTTFM-LFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVL 90
W F+ +F G A Y++R N ++A+ + + +S E G LS+ Y
Sbjct: 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLV---------EQGFSKGELGFALSAISIAYGF 76
Query: 91 TQIPIGLLTKNHDSHKMLAYGMVVNAVFALL---VPVSSQSIWCLAAVRFIQGMGEGPIV 147
++ +G ++ + L G++++A LL VP ++ SI + + F+ G +G
Sbjct: 77 SKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGW 136
Query: 148 PCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVI 207
P + W ER + I G I + L F W A Y +
Sbjct: 137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLV-LLGMAWFND-WHAALYFPAIC 194
Query: 208 CLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFL 267
+I + ++ + P S +EE + ++L A I ++ +
Sbjct: 195 AIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLW 254
Query: 268 SILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVL-NYLADY 326
I +A++ ++ PT+LKEV HF + + Y I ++L +++D
Sbjct: 255 YIAIANVFVYLLRYGVLDWSPTYLKEVKHFA-LDKSSWAYFLYEYAGIPGTLLCGWMSDK 313
Query: 327 FIRKKILSTG 336
+ +TG
Sbjct: 314 VFKGNRGATG 323
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar [Transport and binding proteins, Other]. Length = 438 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 70/325 (21%), Positives = 114/325 (35%), Gaps = 41/325 (12%)
Query: 77 RGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVR 136
L S FF G +L G L+ K+L +V AV +L S + R
Sbjct: 129 VDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLT-AFSPNYTVFLVFR 187
Query: 137 FIQGMGEGPIVPCTHAILAKWIPPGER---SFLGGIVYSGAQFGTIISYPVSGYLAYGTF 193
+ GMG G I + +++P +R L + +S + +AY F
Sbjct: 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLV-------LLPLVAY--F 238
Query: 194 LQGWPAIFYVFGVICLIWCVLFIFLVYENPH---SDKRVSVEEKEYILYSI--FGGDIIE 248
+ W + + + L + V E+P S R +EE IL I G +
Sbjct: 239 IPDWRWLQLAVSLPTFL-FFLLSWFVPESPRWLISQGR--IEEALKILQRIAKINGKKLP 295
Query: 249 DLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKN-GLISA 307
S D+ S S L N TL M+ F ++ ++ + G +
Sbjct: 296 AEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGG 355
Query: 308 TPYIAMFITSSV------LNYLA-DYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVIL 360
Y+ +FI+ V + L D R+ ++ + L+ +PV L
Sbjct: 356 NIYLDLFISGLVELPAKLITLLLIDRLGRRYTMA------ASLLLAGVALLLLLFVPVDL 409
Query: 361 GFTHTPTIVCLILAMACNGGIYAGF 385
F T LA+ GI + F
Sbjct: 410 YFLRT------ALAVLGKFGITSAF 428
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 7e-05
Identities = 54/320 (16%), Positives = 105/320 (32%), Gaps = 54/320 (16%)
Query: 160 PGERSFLGGIVYSGAQFGTIISY----PVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLF 215
P ER+ L GA G ++ P+ L G +G+ + ++ ++ ++
Sbjct: 132 PKERTSLASYRRIGATIGGLLVAVIAPPLVALLGGGNGAKGYFLAALIIAILAVVGFLIC 191
Query: 216 IFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMG 275
E RVSV ++ S+ + + K+ P L +L+ ++
Sbjct: 192 FAGTKE------RVSVPPEQKEKVSLRDM------------FKALFKNRPLLILLLLYLL 233
Query: 276 QNFGYETLMTMLPTFLKEVLHF-DMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILS 334
+L + VL + ++ IA + + + +LA F +K+
Sbjct: 234 NALAMAVRNGLLLYYFTYVLGNAGLF--SVLLLIGTIAAILGAPLWPWLAKRFGKKRTFL 291
Query: 335 TGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTI-VCLILAMACNGGIY---AGFKVNHI 390
G + ++ L V ++LA G + +
Sbjct: 292 LGML----------LAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLADVV 341
Query: 391 DISPC-----FAGILMSITNCSANVVGMLAPTISGLLLNWF--------QHDEMLS--WK 435
D GI S+ + + + G L I GLLL + Q LS
Sbjct: 342 DYGEWKTGKRREGITFSLYSFADKLGGALGGAIVGLLLAFAGYVANATAQSAAALSGIRL 401
Query: 436 VVFLVSAVLYITCATVYLLF 455
+ L+ AVL + + +
Sbjct: 402 LFTLIPAVLALLALLILRFY 421
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 127 QSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG 186
L R + G+G G +P A+ ++ + P R ++Y G FG ++ +
Sbjct: 101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGV 160
Query: 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPH-SDKRVSVEEKEYILYSIFGG 244
A W IFYV GV L+ L + + E+ + + +++ +L ++FG
Sbjct: 161 LAAGDA---AWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGE 216
|
Length = 406 |
| >gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (102), Expect = 1e-04
Identities = 60/303 (19%), Positives = 121/303 (39%), Gaps = 9/303 (2%)
Query: 71 SWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVS-SQSI 129
S + GLLLS+FF GY + + G L + K+L G+++ + LL+ ++ + +
Sbjct: 35 SSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGL 94
Query: 130 WCLAAVRFIQGMGEGPIVPCTHAILAKWIPP-GERSFLGGIVYSGAQFGTIISYPVSGYL 188
L +R +QG+G G ++P A+L++W P ER G+V GA + P+ L
Sbjct: 95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGL 154
Query: 189 AYGTFLQGWPAIFYVFGVICLIWCVLFIFL-------VYENPHSDKRVSVEEKEYILYSI 241
G L GW A F + ++ L+ +L + L + + + +L +
Sbjct: 155 LLGALLWGWRAAFLLAALLGLLLLILVLLLDLLLAAPRLPLAVGLALIELGKLLLLLLIL 214
Query: 242 FGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIK 301
G ++ L + L + +A + G L+ +LP L +
Sbjct: 215 LLGGLVLLLLGLYLSAAGFGLRALLLGLGLALLALFVGALILLVLLPILLGAAGGLSALV 274
Query: 302 NGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILG 361
I + + + + + ++ + R ++ + L+ ++ + L
Sbjct: 275 GAAGGLLALILLGLAGLLGTLVGGSLLVDRLGRSLGLRAILLAGALLLAILLLVLLLALV 334
Query: 362 FTH 364
T
Sbjct: 335 LTI 337
|
Length = 338 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 59/298 (19%), Positives = 108/298 (36%), Gaps = 31/298 (10%)
Query: 64 SIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVP 123
+ + + STV GL++S F G ++ + G L K L G V+ + ALL
Sbjct: 35 LTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQG 94
Query: 124 VS-SQSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISY 182
+ +S + L R I G+G G I +++ P R LG + G FG +++
Sbjct: 95 FAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAA 154
Query: 183 PVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSD----KRVSVEEKEYIL 238
+ L + GW + + +L + + P S + +EE +L
Sbjct: 155 IIGLGLNKYSNSDGWRIPLGL----QFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVL 210
Query: 239 YSIFGGD--------IIEDLKASSIPWGDIVKS--------GPFLSILVAHMGQNF-GYE 281
+ G + L+ S L ++ + Q G
Sbjct: 211 AKLRGVSDVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGIN 270
Query: 282 TLMTMLPTFLKEV-LHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGAT 338
+ PT + + L ++ ++ ++ FI +L D F R+ +L GA
Sbjct: 271 AIFYYSPTIFETLGLSDSLLVTIIVGVVNFVFTFIAI----FLVDRFGRRPLLLLGAA 324
|
Length = 449 |
| >gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 60/339 (17%), Positives = 118/339 (34%), Gaps = 49/339 (14%)
Query: 33 TTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQ 92
T +L +G A + T ++VAI + S + W L +
Sbjct: 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGS-SLSQVQWVITSYMLANA--------IS 53
Query: 93 IPI-GLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTH 151
IP+ G L K + ++ + +LL V+ ++ + R IQG G GP++P +
Sbjct: 54 IPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP-NLELMIIFRVIQGFGGGPLIPLSF 112
Query: 152 AILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIW 211
+ L PP +R I + + G++ W IF + I +I
Sbjct: 113 STLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWI---IENYHWRWIFLINVPIGIIV 169
Query: 212 CVLFIFLVYENPHSDKRVSVEEKEYILYSI-FGGDIIEDLKASSIPWGD--------IVK 262
V+ F + + + +L S+ G + + W D I
Sbjct: 170 VVV-AFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITG 228
Query: 263 SGPFLSILVAHMGQN-------------------------FGYETLMTMLPTFLKEVLHF 297
++ +V + + G +LP +L++VL +
Sbjct: 229 LVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGY 288
Query: 298 DMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTG 336
++ GL +A ++S + + D +K+++ G
Sbjct: 289 TALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIG 327
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.003
Identities = 60/302 (19%), Positives = 106/302 (35%), Gaps = 34/302 (11%)
Query: 135 VRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFL 194
R + G+G G + A + + P R+ G++ SG G +++ V Y
Sbjct: 106 ARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV--YSLVVPVW 163
Query: 195 -QGWPAIFY--VFGVICLIWCVLFI--FLVYENPHSDKR------VSVEEKEYILYSIFG 243
GW A+F+ + +I +W I ++ H+ K + E+ + +I
Sbjct: 164 GDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVM 223
Query: 244 GDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNG 303
++++ W F+ ++V + N + +LPT+LK L
Sbjct: 224 TLAAAMVQSAGKRW------PTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVA 277
Query: 304 LISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFT 363
I I + V +L D+ R+K G + IIPV
Sbjct: 278 NIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLA-----------GQLLIIPVFA-IG 325
Query: 364 HTPTIVCLILAM--ACNGGIYAGFKVNHIDISPCFA-GILMSITNCSANVVGMLAPTISG 420
++ L L GI+ + + P + T N+ G LAP I
Sbjct: 326 ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGA 385
Query: 421 LL 422
LL
Sbjct: 386 LL 387
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 63/269 (23%), Positives = 94/269 (34%), Gaps = 36/269 (13%)
Query: 116 AVFALLVPVSSQSIWC---LAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYS 172
+ LL ++ IW L R IQG G LA++ PPG+R F G
Sbjct: 80 LLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQV 139
Query: 173 GAQFGTIIS----YPVSGYLAYGTFLQ-GWPAIFYVFGVICLIWCVLFIFLVYENPHSDK 227
GA G +++ +S L L+ GW F V V+ LI L
Sbjct: 140 GAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL------------- 186
Query: 228 RVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIV--KSGPFLSILVAHMGQNFGYETLMT 285
R ++EE +F E K P + + PFL L + + + T
Sbjct: 187 RRNLEET-----PVFE-KAQEKHKKKRGPIAETLTKHRKPFLLGLGLVIATTTTFYLITT 240
Query: 286 MLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTG-------AT 338
LPT+L + L L+ I FIT + L+D R+ +L A
Sbjct: 241 YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAV 300
Query: 339 RKLMTSIGEYGPGLMFIIPVILGFTHTPT 367
LM + L F + + +
Sbjct: 301 PLLMALLDSGSFTLFFFLVLGMALIGGMY 329
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 520 | |||
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| KOG2532|consensus | 466 | 100.0 | ||
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| KOG2533|consensus | 495 | 100.0 | ||
| KOG1330|consensus | 493 | 100.0 | ||
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 100.0 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 100.0 | |
| PRK10054 | 395 | putative transporter; Provisional | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.98 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.98 | |
| KOG0569|consensus | 485 | 99.98 | ||
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.98 | |
| KOG2504|consensus | 509 | 99.97 | ||
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| KOG3764|consensus | 464 | 99.97 | ||
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.97 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.97 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.97 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.97 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.97 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.97 | |
| KOG0253|consensus | 528 | 99.96 | ||
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.96 | |
| KOG0252|consensus | 538 | 99.96 | ||
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.96 | |
| KOG0254|consensus | 513 | 99.96 | ||
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.96 | |
| KOG2615|consensus | 451 | 99.96 | ||
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.96 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.96 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.95 | |
| KOG0255|consensus | 521 | 99.95 | ||
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.95 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.94 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.93 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.93 | |
| KOG4686|consensus | 459 | 99.93 | ||
| KOG2563|consensus | 480 | 99.91 | ||
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.91 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.9 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.9 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.9 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.89 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.89 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.89 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.88 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.88 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.87 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.87 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.86 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.85 | |
| KOG3626|consensus | 735 | 99.82 | ||
| KOG2325|consensus | 488 | 99.8 | ||
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.8 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.76 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.74 | |
| KOG2816|consensus | 463 | 99.73 | ||
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.61 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.59 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.59 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.57 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.56 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.54 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.53 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.52 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.5 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.49 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.47 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.46 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.46 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.46 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.46 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.45 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.45 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.45 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.45 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.45 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.44 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.43 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.42 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.41 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.41 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.4 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.4 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.4 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.4 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.4 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.39 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.39 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.38 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.37 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.37 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.36 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.35 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.35 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.34 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.33 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.33 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.32 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.31 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.31 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.3 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.3 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.3 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.3 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.29 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.29 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.28 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.27 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.27 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.26 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.26 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.25 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.25 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.24 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.24 | |
| KOG3762|consensus | 618 | 99.23 | ||
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.23 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.23 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.22 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.22 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.21 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.2 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.19 | |
| KOG3098|consensus | 461 | 99.19 | ||
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.19 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.17 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.17 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.17 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.16 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.16 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.16 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.15 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.15 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.15 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.14 | |
| KOG0637|consensus | 498 | 99.13 | ||
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.13 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.12 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.12 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.12 | |
| KOG0569|consensus | 485 | 99.12 | ||
| KOG1330|consensus | 493 | 99.12 | ||
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.1 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.1 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.1 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.08 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.08 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.08 | |
| KOG2504|consensus | 509 | 99.08 | ||
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.07 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.07 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.06 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.06 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.06 | |
| KOG4686|consensus | 459 | 99.04 | ||
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.04 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.04 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.03 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.02 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.99 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.97 | |
| KOG3764|consensus | 464 | 98.96 | ||
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.94 | |
| KOG4332|consensus | 454 | 98.93 | ||
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.89 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.89 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.88 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.87 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.84 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.84 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.83 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.81 | |
| KOG3574|consensus | 510 | 98.79 | ||
| KOG0253|consensus | 528 | 98.79 | ||
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.78 | |
| KOG2615|consensus | 451 | 98.77 | ||
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.77 | |
| KOG2532|consensus | 466 | 98.72 | ||
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.63 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.61 | |
| KOG3810|consensus | 433 | 98.59 | ||
| PRK11462 | 460 | putative transporter; Provisional | 98.58 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.52 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.48 | |
| KOG3762|consensus | 618 | 98.47 | ||
| KOG0255|consensus | 521 | 98.44 | ||
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.41 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.39 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.38 | |
| KOG0252|consensus | 538 | 98.37 | ||
| KOG0254|consensus | 513 | 98.35 | ||
| KOG2533|consensus | 495 | 98.33 | ||
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.27 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.24 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.19 | |
| KOG1237|consensus | 571 | 98.18 | ||
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.15 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.14 | |
| KOG2816|consensus | 463 | 98.05 | ||
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.02 | |
| KOG2325|consensus | 488 | 97.94 | ||
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.8 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.74 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.7 | |
| KOG1479|consensus | 406 | 97.7 | ||
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.65 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.55 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.51 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.47 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.31 | |
| KOG2563|consensus | 480 | 97.29 | ||
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.27 | |
| KOG3626|consensus | 735 | 97.25 | ||
| KOG3880|consensus | 409 | 97.02 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 97.02 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.89 | |
| KOG3097|consensus | 390 | 96.77 | ||
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.63 | |
| KOG0637|consensus | 498 | 96.56 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.35 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.31 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.3 | |
| KOG3098|consensus | 461 | 95.73 | ||
| KOG4830|consensus | 412 | 94.57 | ||
| KOG1479|consensus | 406 | 94.1 | ||
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 93.81 | |
| KOG1237|consensus | 571 | 92.93 | ||
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 92.89 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 92.26 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 90.57 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 90.06 | |
| KOG3574|consensus | 510 | 90.02 | ||
| KOG2601|consensus | 503 | 87.17 | ||
| KOG4332|consensus | 454 | 85.98 | ||
| KOG2601|consensus | 503 | 83.11 | ||
| PF02990 | 521 | EMP70: Endomembrane protein 70; InterPro: IPR00424 | 81.05 |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=330.03 Aligned_cols=406 Identities=20% Similarity=0.261 Sum_probs=335.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCc
Q psy10491 25 KGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDS 104 (520)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Gr 104 (520)
...++|+.+++.+++++...++.|.+++.+.|.+. ++.++|.+|+|++.+.+.++|.++-.+.|.++||.++
T Consensus 22 ~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~--------e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~np 93 (448)
T COG2271 22 TYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALI--------EDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNP 93 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHH--------HhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence 34567788999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhh
Q psy10491 105 HKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYP 183 (520)
Q Consensus 105 r~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~ 183 (520)
|+.+.+++++.++.++++++++ +. .+.++.++.|..+|..+|++...++.|++++|||+..++++.+.++|..+.|+
T Consensus 94 r~fm~~gLilsai~nil~Gfs~--s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~ 171 (448)
T COG2271 94 RYFMAFGLILSAIVNILFGFSP--SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPL 171 (448)
T ss_pred ceeehHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHH
Confidence 9999999999999999999997 77 99999999999999999999999999999999999999999999999999999
Q ss_pred hh--hhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhc-cCCccccccccCccchhhh
Q psy10491 184 VS--GYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSI-FGGDIIEDLKASSIPWGDI 260 (520)
Q Consensus 184 l~--~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 260 (520)
+. +.+..+ .+||..|++.++++++..++.++.++|+|+...-.+.++......+. .+....+.....+.-.+.+
T Consensus 172 ~~~la~~~~~---~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YV 248 (448)
T COG2271 172 VALLAFFAFH---GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYV 248 (448)
T ss_pred HHHHHHHHhc---cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHH
Confidence 99 888887 79999999999999999999999999999876554443322111111 0000000011122345667
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHH--hhccccccch
Q psy10491 261 VKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFI--RKKILSTGAT 338 (520)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~~~~~~~~~~ 338 (520)
++||.+|.++++.++.+..-+++..|.|.|+.|..|+|...++...+.+-++++.|.++.||++||+. ||.+.
T Consensus 249 L~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~----- 323 (448)
T COG2271 249 LKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM----- 323 (448)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH-----
Confidence 89999999999999999999999999999999999999999999999999999999999999999975 44443
Q ss_pred hhhhhhhhchhhhhhhhhhhccCCCh-HHH-HHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhh-HHhH
Q psy10491 339 RKLMTSIGEYGPGLMFIIPVILGFTH-TPT-IVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANV-VGML 414 (520)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~-g~~i 414 (520)
..+.+++..+++..+...++.. +.. +.++.+|++. .+..-.......|+.|++ .|++.|+...+.++ |.+.
T Consensus 324 ----~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~I-yGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~ 398 (448)
T COG2271 324 ----ALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLI-YGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAAL 398 (448)
T ss_pred ----HHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH-hhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHh
Confidence 3455555555555555555442 333 3333333333 333344556667888988 99999999999999 8899
Q ss_pred HHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10491 415 APTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGR 459 (520)
Q Consensus 415 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (520)
+....|++.| ..+|...|++..+.++++.++++...+.+
T Consensus 399 a~~~~g~i~d------~~gW~g~Fi~~~~~a~l~~lll~~~~~~~ 437 (448)
T COG2271 399 AGLPLGYIAD------TWGWDGGFIVLSIAALLAILLLLPVWNAE 437 (448)
T ss_pred cCCcceeeEe------cCCCcchHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999 47999999999888888887776665443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=318.87 Aligned_cols=380 Identities=20% Similarity=0.223 Sum_probs=330.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhH
Q psy10491 29 YRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKML 108 (520)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l 108 (520)
..+..++.+.++.|...........++|++. +|+|+|..+.|++.|+|.+++++++|+...+.||+.||+++
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA--------~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lL 81 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVGLLPPIA--------ADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLL 81 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHhchHHHH--------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 3456677788888888999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhh
Q psy10491 109 AYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGY 187 (520)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~ 187 (520)
+..+.++.++++++++++ || .++++|++.|+..|..++...++..+..|+++|++++++...+.+++.++|.+++.+
T Consensus 82 l~~l~lFi~~n~l~alAp--~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ 159 (394)
T COG2814 82 LGLLALFIVSNLLSALAP--SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF 159 (394)
T ss_pred HHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH
Confidence 999999999999999998 88 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHH
Q psy10491 188 LAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFL 267 (520)
Q Consensus 188 l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (520)
+.+. +|||+.|++.+.++++..+..+..+| |++..+ +...+.....+++|+|+++
T Consensus 160 ig~~---~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~--------------------~~~~~~~~~~~~l~~p~v~ 214 (394)
T COG2814 160 LGQL---FGWRATFLAIAVLALLALLLLWKLLP--PSEISG--------------------SLPGPLRTLLRLLRRPGVL 214 (394)
T ss_pred HHHH---hhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCC--------------------CCCcchhHHHHHhcCchHH
Confidence 9998 99999999999999998888999999 221111 1111122346789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhc
Q psy10491 268 SILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGE 347 (520)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 347 (520)
...+..++...+.+...+|+..++++..|++....+++...++++.++|+.++|++.|| +.++.+ ....
T Consensus 215 ~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l----------~~~~ 283 (394)
T COG2814 215 LGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRAL----------IAAL 283 (394)
T ss_pred HHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHH----------HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 777665 4555
Q ss_pred hhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhcccc
Q psy10491 348 YGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQ 427 (520)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~ 427 (520)
.+..+.+..+.+..++.+.......+..+..............+..|+.++.+.+++....|+|..+|..++|.++|
T Consensus 284 ~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~--- 360 (394)
T COG2814 284 LLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLD--- 360 (394)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 66667777777777776666665555555544444455555556777899999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy10491 428 HDEMLSWKVVFLVSAVLYITCATVYLLFSSGRK 460 (520)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (520)
+.++....++.+++.+++.++.+...+.++
T Consensus 361 ---~~g~~~~~~~~a~l~~~a~~~~~~~~~~~~ 390 (394)
T COG2814 361 ---ALGYAATGWVGAALLLLALLLALLSARKDR 390 (394)
T ss_pred ---hhchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 689999999999999999888877655443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=336.59 Aligned_cols=427 Identities=36% Similarity=0.600 Sum_probs=328.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCC--------------CcccCCCCCChhhhHHHHHHHHHHHHHh
Q psy10491 26 GLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPES--------------SIHVDSKSWSTVERGLLLSSFFYGYVLT 91 (520)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------------~~~~~~~~~s~~~~g~~~s~~~~~~~~~ 91 (520)
..+.|+.+..++++++.+.+.|+.+++...+.+.++.. ..+..+++++..+.|++.+++.+++.++
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~ 92 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII 92 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence 45678889999999999999999999999998875221 1122389999999999999999999999
Q ss_pred hhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHH
Q psy10491 92 QIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIV 170 (520)
Q Consensus 92 ~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~ 170 (520)
+++.|+++||+|||+++.++.++++++.+++.++..+++ .+++.|+++|++.+...+....++.||+|+++|++++++.
T Consensus 93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 172 (465)
T TIGR00894 93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS 172 (465)
T ss_pred HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999999999999999988866532356 8999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHhhhhhhhhhcccccc-CcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccc
Q psy10491 171 YSGAQFGTIISYPVSGYLAYGTFLQ-GWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIED 249 (520)
Q Consensus 171 ~~~~~~G~~~g~~l~~~l~~~~~~~-gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (520)
..+..+|.++++++++.+.+. . +||+.|++.++++++..++.+++.+|+|+..++.++++++...+...+.. .
T Consensus 173 ~~~~~~g~~i~~~l~~~l~~~---~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~---~ 246 (465)
T TIGR00894 173 TSGFQLGTFIFLPISGWLCES---WGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQK---G 246 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---cCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhccccc---C
Confidence 999999999999999999876 4 99999999999888866666677777776544444433333222111110 1
Q ss_pred cccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q psy10491 250 LKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIR 329 (520)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 329 (520)
+.+.+.++++++++|.+|...+..++.....+.+.+|+|.|+++.+|++..+.++..++..++..++.++.|+++||+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~ 326 (465)
T TIGR00894 247 STRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKS 326 (465)
T ss_pred CCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223468899999999999999999999999999999999999899999999999999999999999999999999987
Q ss_pred hccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHh
Q psy10491 330 KKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSAN 409 (520)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~ 409 (520)
|+.......++....++..+..+..+............+.++.++.+..+...+.......+..|+.+|.+.|+.+..++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 406 (465)
T TIGR00894 327 SKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGF 406 (465)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHH
Confidence 76543222222222232222222222222222233333444444444444444445555667788889999999999999
Q ss_pred hHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q psy10491 410 VVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQ 461 (520)
Q Consensus 410 ~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (520)
+++.++|.+.|.+.+. ....+|...|.+.+++.+++.++.....+.++.
T Consensus 407 l~~~i~p~l~g~~~~~---~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 455 (465)
T TIGR00894 407 IGGLIASTLAGNILSQ---DSKNVWLIVFLIMAFVNILCVIFYLIFGSAERQ 455 (465)
T ss_pred HHHHHHHHhhheeeCC---CCchHHHHHHHHHHHHHHHHHHHeeeeecceec
Confidence 9999999999998871 112468899999998888887776655444333
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=321.15 Aligned_cols=389 Identities=36% Similarity=0.696 Sum_probs=348.3
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~ 146 (520)
.+++++..+.+++.+.+++|+.+++++.|+++||+|.|+++..+.++.++++++..++...++ .+++.|++||++.|..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 589999999999999999999999999999999999999999999999999999999964455 7899999999999999
Q ss_pred hhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy10491 147 VPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSD 226 (520)
Q Consensus 147 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~ 226 (520)
+|+...+.+.|.|++||++..++...+..+|.+++-+++|++.+.. .||+++|++.++++++..++.+++..|+|.+.
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~--~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h 223 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESS--LGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH 223 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC--CCCchHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 9999999999999999999999999999999999999999999873 79999999999999998888888889999988
Q ss_pred CCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHH
Q psy10491 227 KRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLIS 306 (520)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 306 (520)
+...++|++.+.+.+.+.. .++..+.+++++++++.+|.+.+..++.+++.+.+..|+|.|+++++|++..+.|++.
T Consensus 224 ~~is~~El~~I~~~k~~~~---~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~s 300 (466)
T KOG2532|consen 224 PNISEKELKYIEKGKSEAH---VKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLS 300 (466)
T ss_pred CCCCHHHHHHHHhcccccc---cCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHH
Confidence 8888888887776654332 2222678999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCCh-HHHHHHHHHHHHHhhcccccc
Q psy10491 307 ATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTH-TPTIVCLILAMACNGGIYAGF 385 (520)
Q Consensus 307 ~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 385 (520)
++..+...+..++.|.++||..+| .+.....||.+..++....++.++.+.+.+... +..++++.+.....+...+..
T Consensus 301 alP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf 379 (466)
T KOG2532|consen 301 ALPFLAMAIVKFVAGQLSDRLTFR-ILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGF 379 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhh
Confidence 999999999999999999999998 777778899999999999999999999988644 466667777777777777777
Q ss_pred ceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCcccCCC
Q psy10491 386 KVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYWDK 465 (520)
Q Consensus 386 ~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (520)
.....+..|++.+..+|+.+.+..+.+.++|.+.|.+.. +. ....|+..|.+.+++.+++.++..++...++.++.+
T Consensus 380 ~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~--~~-t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~~~w~~ 456 (466)
T KOG2532|consen 380 YKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT--DN-TREEWRIVFLIAAGILIVGNIIFLFFGSGEPAPWTK 456 (466)
T ss_pred HhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC--CC-CHHHHHHHHHHHHHHHHHhchheeEeecCcccCccC
Confidence 777777799999999999999999999999999999995 12 467999999999999999998877776555555544
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=336.43 Aligned_cols=406 Identities=16% Similarity=0.133 Sum_probs=300.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcch
Q psy10491 27 LGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHK 106 (520)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~ 106 (520)
.+..+.++.+++++++..+.++..+++..|.+. +++|++..+.|++.+++.+++.+++++.|+++||+|||+
T Consensus 24 ~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~--------~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~ 95 (467)
T PRK09556 24 FKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMI--------STYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQ 95 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHH--------HhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccc
Confidence 344566778888999999999999999999999 899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHh-----HhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHH
Q psy10491 107 MLAYGMVVNAVFALLVPV-----SSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTII 180 (520)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~-----~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~ 180 (520)
++.+++++++++.++.++ ++ ++ .+++.|+++|++.+...+...++++||+|+++||+++|++..+.++|.++
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l 173 (467)
T PRK09556 96 FLPFLLILSAICMLGFGASLGSGSV--SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAG 173 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhH
Confidence 999998888887777665 34 67 99999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhcc-CCccccccccC-cc-ch
Q psy10491 181 SYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIF-GGDIIEDLKAS-SI-PW 257 (520)
Q Consensus 181 g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~ 257 (520)
++++..++.+.....+||..|.+.+++.++..++.+++.+++|++....+.++. ..+... +....++++.. .. ..
T Consensus 174 ~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 251 (467)
T PRK09556 174 AGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEI--FGEPISEEDKETESTDMTKWQIFV 251 (467)
T ss_pred HHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhc--ccCccchhhhccccccCcHHHHHH
Confidence 999987776541113699999998888888777777777777654332222110 000000 00000000000 01 12
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q psy10491 258 GDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGA 337 (520)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~ 337 (520)
++.+++|.+|...+..++......+...|+|.|+++.+|++..+++.......++.+++.++.|+++||+++|+...
T Consensus 252 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~--- 328 (467)
T PRK09556 252 EYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALV--- 328 (467)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH---
Confidence 23789999999999998888888888999999999889999999999999999999999999999999999987652
Q ss_pred hhhhhhhhhchhhhhhh--hhhhccCCChHHH-HHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhh-HH
Q psy10491 338 TRKLMTSIGEYGPGLMF--IIPVILGFTHTPT-IVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANV-VG 412 (520)
Q Consensus 338 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~-g~ 412 (520)
....+..++. ..+. ..++.... +..++++.+..+.. ........|..|++ +|++.|+.+...++ |+
T Consensus 329 -------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~ 399 (467)
T PRK09556 329 -------ACIALALIIFTLGVYQ-HATSEYMYLASLFALGFLVFGPQ-LLIGVAAVGFVPKKAIGVANGIKGTFAYLFGD 399 (467)
T ss_pred -------HHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHhhHH-HHHHHHHHhhcchhhHHHHHHHHHHHHHHHhH
Confidence 2211111111 1111 12232222 33333332222211 11223444677765 99999999999997 66
Q ss_pred hHHHHHHHHhhc-cccc-----cccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 413 MLAPTISGLLLN-WFQH-----DEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 413 ~i~~~~~g~l~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
+++|.+.|.+.| ..+. ....+|+..|.+..++.+++.++.+.+.
T Consensus 400 ~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 400 SFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred HHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 1100 0134699999999888888877766553
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=318.06 Aligned_cols=375 Identities=15% Similarity=0.106 Sum_probs=293.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhH
Q psy10491 29 YRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKML 108 (520)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l 108 (520)
++|..+..+.++.+....+.....+.+|.+. +++|.++++.|++.+++.+++.+++++.|+++||+|||+++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~--------~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 77 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIA--------QSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLL 77 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHcchHHHH--------hHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 3455555555555554444445566788888 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhh
Q psy10491 109 AYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGY 187 (520)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~ 187 (520)
..+.++.+++++++++++ ++ .++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~--~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~ 155 (390)
T PRK03545 78 IGLFVLFIASHVLSALAW--NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRV 155 (390)
T ss_pred HHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999996 66 999999999999998889999999999999999999999999999999999999999
Q ss_pred hhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHH
Q psy10491 188 LAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFL 267 (520)
Q Consensus 188 l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (520)
+.+. .|||+.|++.++++++..++.+..+||.+++++. .....++++|+|+++
T Consensus 156 l~~~---~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~ 208 (390)
T PRK03545 156 IGQY---LGWRTTFLAIGGGALITLLLLIKLLPLLPSEHSG------------------------SLKSLPLLFRRPALV 208 (390)
T ss_pred HHHH---hcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc------------------------hHHHHHHHHhCcHHH
Confidence 9887 8999999999988887666666666664432110 011235678888887
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhc
Q psy10491 268 SILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGE 347 (520)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 347 (520)
...+..++..........+.+.++++..|.+..+++.+.....++.++++++.+++.||+++|... .+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-----------~~~ 277 (390)
T PRK03545 209 SLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-----------IAI 277 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-----------HHH
Confidence 766666666666666677888888887899999999999999999999999999999999877543 333
Q ss_pred hhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhcccc
Q psy10491 348 YGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQ 427 (520)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~ 427 (520)
.+...+...+....++.+......++.+.......+.......+..|+++++++|+.+...++|..+||.+.|.+.|
T Consensus 278 ~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~--- 354 (390)
T PRK03545 278 ALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSL--- 354 (390)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 33333333222222333333333333333333444445555667778889999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 428 HDEMLSWKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
..+++..|+..+++.+++.+..+...+
T Consensus 355 ---~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 355 ---HLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred ---ccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 679999999999888888877766553
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=322.97 Aligned_cols=392 Identities=18% Similarity=0.205 Sum_probs=294.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM 107 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~ 107 (520)
+.+|.++.+++++++++++|+.+++...|.+. +|+|++..+.|++.+++.+++.+++++.|+++||+|||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~--------~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~ 75 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMG--------KDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRW 75 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhH--------hhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHH
Confidence 35688888999999999999999999999888 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhh
Q psy10491 108 LAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG 186 (520)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~ 186 (520)
+..++++++++++++++++ ++ .+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|.++++++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 76 IAGIMVLWGIASTATMFAT--GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSG 153 (412)
T ss_pred HHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986 77 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccc---cccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCC--cc--cccc-ccC----c
Q psy10491 187 YLAYGT---FLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGG--DI--IEDL-KAS----S 254 (520)
Q Consensus 187 ~l~~~~---~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~-~~~----~ 254 (520)
++.+.. +..|||+.|++.+++.++..++.++++||+|++.+...+++++...+..... .. .+.. +.. +
T Consensus 154 ~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (412)
T TIGR02332 154 YILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQR 233 (412)
T ss_pred HHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHH
Confidence 886420 1269999999999888887777788889988654322222222211111000 00 0000 000 1
Q ss_pred cchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhh-cCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy10491 255 IPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEV-LHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKIL 333 (520)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 333 (520)
..+++++ +|.+|...+..++....++.+.+|+|.++++. .|++..+++.+.....++.+++.++.|+++||+++|+..
T Consensus 234 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~ 312 (412)
T TIGR02332 234 SMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHH 312 (412)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHH
Confidence 1234444 57888888888888888889999999999873 467888889999999999999999999999999877643
Q ss_pred cccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHH
Q psy10491 334 STGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVG 412 (520)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~ 412 (520)
. .....+..+++....... ........+...........+.......+..|+ +|++++|+.+...++|+
T Consensus 313 ~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~ 382 (412)
T TIGR02332 313 T---------ALPYLFAAAGWLLASATD-HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGS 382 (412)
T ss_pred H---------HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhh
Confidence 1 122222222222222222 222222222222211112222233344455554 59999999999999999
Q ss_pred hHHHHHHHHhhccccccccchhHHHHHHHHHHH
Q psy10491 413 MLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLY 445 (520)
Q Consensus 413 ~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 445 (520)
+++|.+.|.+.| ...+|...+++++++.
T Consensus 383 ~~~p~~~g~i~~-----~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 383 ALSPFLIGILKD-----ATGSFNSGLWFVAALL 410 (412)
T ss_pred hhhhhhcccccc-----cCCCCchhHHHHHHHH
Confidence 999999999998 2335888888776654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=321.54 Aligned_cols=401 Identities=15% Similarity=0.172 Sum_probs=296.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM 107 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~ 107 (520)
+.++.+...+++.++..++++..++..+|.+. +++|++..+.|++.+++.+++.+++++.|+++||+|||++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~ 90 (434)
T PRK11663 19 YWRRHILITMYLGYALFYFTRKSFNAAMPEML--------ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYF 90 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHH--------HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchh
Confidence 34566777788888899999999999999999 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhh
Q psy10491 108 LAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG 186 (520)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~ 186 (520)
+.++.++.+++.+++++++ ++ .+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|.++++++++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 168 (434)
T PRK11663 91 MGIGLIATGIINILFGFSS--SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVG 168 (434)
T ss_pred HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986 66 88999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccc-cCccch-hhhccch
Q psy10491 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLK-ASSIPW-GDIVKSG 264 (520)
Q Consensus 187 ~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~ 264 (520)
.+.+. .|||+.|++.+++.++..++..+.+||+|++....+.++.+...++.. ...++.+ +.+..+ ...+++|
T Consensus 169 ~l~~~---~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 243 (434)
T PRK11663 169 AIALH---YGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELA--QQQEGAGLSRKEILTKYVLLNP 243 (434)
T ss_pred HHHHc---ccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccc--hhccccCCChhhhHHHHHhcCh
Confidence 99887 899999999888877766666667788765432111100000000000 0000000 001111 2356788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHh--hccccccchhhhh
Q psy10491 265 PFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIR--KKILSTGATRKLM 342 (520)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~--~~~~~~~~~~~~~ 342 (520)
.+|.+.+..++.......+..|+|.|+++.+|++..+++...+...++..+++++.|++.||+.+ |+... ..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~------~~ 317 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMN------LI 317 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHH------HH
Confidence 89988888887777788888999999987789999999999999999999999999999999843 22221 00
Q ss_pred hhhhchhhhhhhhhhhccCCChHHH-HHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHHhHHHHHHH
Q psy10491 343 TSIGEYGPGLMFIIPVILGFTHTPT-IVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVGMLAPTISG 420 (520)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g 420 (520)
..++.....+.+.... ..+.... ...+.++.+. ............+..|+ ++|+++|+.++..++|++++|.+.|
T Consensus 318 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g 394 (434)
T PRK11663 318 FAAGILLSVGSLWLMP--FASYVMQAACFFTIGFFV-FGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLA 394 (434)
T ss_pred HHHHHHHHHHHHHHcc--cccHHHHHHHHHHHHHHH-hhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHH
Confidence 0112222222221111 1122221 2222222211 11111222344566655 5999999999999999999999999
Q ss_pred HhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy10491 421 LLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSG 458 (520)
Q Consensus 421 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (520)
++.| ..+|...|+..+++.+++.+..+...++
T Consensus 395 ~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 426 (434)
T PRK11663 395 KVLE------IWHWTGFFVVISIAAGISALLLLPFLNA 426 (434)
T ss_pred HHHH------hcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999 5689999999988888877766654443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=316.34 Aligned_cols=397 Identities=14% Similarity=0.080 Sum_probs=284.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHH
Q psy10491 30 RHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLA 109 (520)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~ 109 (520)
+++.+...+...+...++...+++..|.+. +++|++..+.+++.+++.+++.+++++.|+++||+|||+++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~ 105 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIR--------DNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSA 105 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 455566666777777787788888889898 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhh
Q psy10491 110 YGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYL 188 (520)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l 188 (520)
.+.++++++.+++++++ ++ .++++|++.|++.+.. .....+++|++|+++||+++++.....++|..+++.+.+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i 182 (476)
T PLN00028 106 FLLMLTAPAVFCMSLVS--SATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV 182 (476)
T ss_pred HHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886 66 8889999999998764 45667899999999999999999887777877776666544
Q ss_pred hc----c--ccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhcc
Q psy10491 189 AY----G--TFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVK 262 (520)
Q Consensus 189 ~~----~--~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (520)
.. . .+..|||+.|++.+++.++..++.+++.++.|+.. .++.++ +. .. ++......+++.++
T Consensus 183 ~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~----~~~~~~---~~--~~---~~~~~~~~~~~~~~ 250 (476)
T PLN00028 183 FPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGN----YRELKK---SG--TM---PKDSFSKVLRYGVT 250 (476)
T ss_pred HHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCc----hhhHHh---cC--cc---ccccHHHHHHHHHc
Confidence 32 1 01148999999999988876666555544444321 011000 00 00 00111123566778
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhh
Q psy10491 263 SGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLM 342 (520)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 342 (520)
++++|.+.+..+........+..++|.|+.+.+|+++.+++.+.+...++.++++++.|+++||+++|+... .|+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~---~r~~~ 327 (476)
T PLN00028 251 NYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMR---GRLWA 327 (476)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcc---hhHHH
Confidence 899888887777666666777889999998888999999999999999999999999999999999875321 12222
Q ss_pred hhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHh
Q psy10491 343 TSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLL 422 (520)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l 422 (520)
..+...+.++..+.+.... +.......+++..+......+....+..++.|+++|++.|+.+..+++|+.++|.+.+ .
T Consensus 328 ~~~~~~l~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~-~ 405 (476)
T PLN00028 328 LWIVQTLGGVFCIWLGRAN-SLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF-T 405 (476)
T ss_pred HHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHH-h
Confidence 2333333333333333332 2222222222222222223334445556777888999999988877777777776654 1
Q ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy10491 423 LNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRK 460 (520)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (520)
. ...+|..+|++.+++.+++.++.++.+..++
T Consensus 406 ~------~~~~y~~~f~~~~~~~~i~~~~~~~~~~~~~ 437 (476)
T PLN00028 406 G------SSYSTETGISLMGVMIIACTLPVAFIHFPQW 437 (476)
T ss_pred c------CCccHhhHHHHHHHHHHHHHHHHHheeccch
Confidence 1 2457999999999999998888877764443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=321.67 Aligned_cols=404 Identities=13% Similarity=0.138 Sum_probs=304.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcch
Q psy10491 27 LGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHK 106 (520)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~ 106 (520)
.+++|.++++++++.+...++...++.++|.+. ++++++..+.+++.+++.++++++++++|+++||+|||+
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~--------~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~ 233 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAE--------KDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQ 233 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 355777888888899999999999999999998 799999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhh
Q psy10491 107 MLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVS 185 (520)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~ 185 (520)
++++++++.+++.+++++++ ++ .++++|++.|++.++..+...++++|++|+++|++.++++.++..+|.++++.++
T Consensus 234 ~lii~lil~~i~~ll~afa~--s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la 311 (742)
T TIGR01299 234 CLLICLSVNGFFAFFSSFVQ--GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 67 9999999999999999999999999999999999999999999999999999888
Q ss_pred hhhhccc----------cccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-ChHHHHHHHhhccCCccc-------
Q psy10491 186 GYLAYGT----------FLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRV-SVEEKEYILYSIFGGDII------- 247 (520)
Q Consensus 186 ~~l~~~~----------~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~------- 247 (520)
..+.... ...+||+.|++.+++.++ .++..+++||+|++.... +.++..+..++......+
T Consensus 312 ~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll-~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~ 390 (742)
T TIGR01299 312 WAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVF-AIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEK 390 (742)
T ss_pred HHHHHhccchhccccccccccHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhH
Confidence 7665421 114799999888776665 566778899999864322 222222222221110000
Q ss_pred -----------------c--ccccC----------------ccchhhhccc---hhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy10491 248 -----------------E--DLKAS----------------SIPWGDIVKS---GPFLSILVAHMGQNFGYETLMTMLPT 289 (520)
Q Consensus 248 -----------------~--~~~~~----------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (520)
+ ..... ...++++++. ++.+.+++.+++..++++++..|+|.
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~ 470 (742)
T TIGR01299 391 VFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPD 470 (742)
T ss_pred HHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 0123445544 24567788888899999999999998
Q ss_pred HHHhh----c-------------------------------------CC-----C-------------------------
Q psy10491 290 FLKEV----L-------------------------------------HF-----D------------------------- 298 (520)
Q Consensus 290 ~~~~~----~-------------------------------------g~-----s------------------------- 298 (520)
++.+. + |+ +
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 550 (742)
T TIGR01299 471 MIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCT 550 (742)
T ss_pred HHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccc
Confidence 86541 0 00 0
Q ss_pred -------------------------------------------cchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy10491 299 -------------------------------------------MIKNGLISATPYIAMFITSSVLNYLADYFIRKKILST 335 (520)
Q Consensus 299 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 335 (520)
.........+..++.+++.++.|+++||+|||+.+
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l-- 628 (742)
T TIGR01299 551 FIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRML-- 628 (742)
T ss_pred hhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH--
Confidence 00123335566788899999999999999999987
Q ss_pred cchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhH
Q psy10491 336 GATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGML 414 (520)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i 414 (520)
.+++++.+++.+.+.+.++.....+..+++ .++.....+....+..|++|.+ |++++|+.++...+|+++
T Consensus 629 --------~~~~~lsai~~ll~~~~~s~~~ll~~~~l~-g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaii 699 (742)
T TIGR01299 629 --------AGSMVLSCISCFFLSFGNSESAMIALLCLF-GGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVL 699 (742)
T ss_pred --------HHHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666554433333333333 3334455667778888998887 999999999999999999
Q ss_pred HHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10491 415 APTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGR 459 (520)
Q Consensus 415 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (520)
+|.+.|.+.+ .+...+|++++++.++++++.+++++++
T Consensus 700 gp~i~g~L~~-------~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 700 GILIFGSFVG-------ITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999998887 2456778888888888777777775543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=314.56 Aligned_cols=395 Identities=15% Similarity=0.151 Sum_probs=269.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhh-hHH-----HHHHHHHHHHHhhhhhhhhhcccCc
Q psy10491 31 HWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVE-RGL-----LLSSFFYGYVLTQIPIGLLTKNHDS 104 (520)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-~g~-----~~s~~~~~~~~~~~~~g~l~Dr~Gr 104 (520)
+..+...+++.+++++|...++...|.+. ++++.+.++ .++ +.++..+++.+++++.|+++||+||
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Gr 86 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALG--------KVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGR 86 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44666778899999999999999999988 566433322 122 2578889999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhHhhhHH-H--------HHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhH
Q psy10491 105 HKMLAYGMVVNAVFALLVPVSSQSIW-C--------LAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQ 175 (520)
Q Consensus 105 r~~l~~~~~~~~~~~~~~~~~~~~~~-~--------l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~ 175 (520)
|+++.+++++++++++++++++ ++ . ++++|+++|++.|+.++...++++|++|+++||++.++...+..
T Consensus 87 r~~l~~~~~l~~i~~~~~a~~~--~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~ 164 (490)
T PRK10642 87 QKILAITIVIMSISTFCIGLIP--SYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSI 164 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence 9999999999999999999996 54 3 89999999999999999999999999999999999999999988
Q ss_pred HHHHHhhhhhhhhhcc-----ccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCcccccc
Q psy10491 176 FGTIISYPVSGYLAYG-----TFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDL 250 (520)
Q Consensus 176 ~G~~~g~~l~~~l~~~-----~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (520)
+|.++|+.+...+... ...+|||++|++.+++.++ .++....+||+|++..+.+..++. .... ..
T Consensus 165 ~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~------~~~~---~~ 234 (490)
T PRK10642 165 AGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQG------DREG---LQ 234 (490)
T ss_pred HHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhhh------cccc---cc
Confidence 9988888766544320 0127999999997766554 445556778876642211100000 0000 01
Q ss_pred ccCccchhhhccc-hhHHH-HHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy10491 251 KASSIPWGDIVKS-GPFLS-ILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFI 328 (520)
Q Consensus 251 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 328 (520)
+..+.++++++++ ++.+. .....++....++.+..|+|.|+++.+|++..+.++......++..++.++.|+++||+|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 314 (490)
T PRK10642 235 DGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFG 314 (490)
T ss_pred ccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1123345566653 23222 223334456677788889999998878999888888888888889999999999999999
Q ss_pred hhccccccchhhhhhhhhchhhh-hhhhhhhc-cCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHH
Q psy10491 329 RKKILSTGATRKLMTSIGEYGPG-LMFIIPVI-LGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITN 405 (520)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~ 405 (520)
||+.+ ..+.++.. .+...+.. ..++........++..+..+........+..+.+|++ |+++.|+.+
T Consensus 315 rr~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~ 384 (490)
T PRK10642 315 RRPFV----------ILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAF 384 (490)
T ss_pred cHHHH----------HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHH
Confidence 99875 23322111 11111111 1122222222222222222222333344445667766 999999877
Q ss_pred HHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy10491 406 CSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRK 460 (520)
Q Consensus 406 ~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (520)
....+++.++|.+.+++.+. ..++...++...+..+++.+..++.+++++
T Consensus 385 ~~~~~~g~~~p~i~g~l~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~pes~~ 434 (490)
T PRK10642 385 NISVLVAGLTPTLAAWLVES-----TQNLMMPAYYLMVVAVIGLITGVTMKETAN 434 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----hCCchHHHHHHHHHHHHHHHHHHHhccccC
Confidence 77778889999999999871 223455555555566666666666655443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=306.80 Aligned_cols=382 Identities=12% Similarity=0.087 Sum_probs=268.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCC---CCChhhhHHHHH---HHHHHHHHhhhhhhhhhcc
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSK---SWSTVERGLLLS---SFFYGYVLTQIPIGLLTKN 101 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~s~~~~g~~~s---~~~~~~~~~~~~~g~l~Dr 101 (520)
+++++.+...+++++++++|...++...|.+. +++ +.+..+.+.+.+ +.+++..++++++|+++||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr 89 (432)
T PRK10406 18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFA--------HIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK 89 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677778899999999999999999998 565 345554444444 4455555999999999999
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhHhhh------HH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHh
Q psy10491 102 HDSHKMLAYGMVVNAVFALLVPVSSQS------IW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGA 174 (520)
Q Consensus 102 ~Grr~~l~~~~~~~~~~~~~~~~~~~~------~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~ 174 (520)
+|||+++.++++++++++++++++++. .. .++++|+++|++.|+.++...++++|++|+++||++.++...+.
T Consensus 90 ~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~ 169 (432)
T PRK10406 90 HGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTL 169 (432)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHH
Confidence 999999999999999999999988511 13 69999999999999999999999999999999999999999888
Q ss_pred HHHHHHhhhhhhhhhcc-----ccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccc
Q psy10491 175 QFGTIISYPVSGYLAYG-----TFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIED 249 (520)
Q Consensus 175 ~~G~~~g~~l~~~l~~~-----~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (520)
..|.++++.+...+... ....|||++|++.++++++ .+.....+||+++.+. + +
T Consensus 170 ~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll-~~~~~~~~~e~~~~~~-------~-------------~ 228 (432)
T PRK10406 170 IGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV-ALWLRRQLDETSQQET-------R-------------A 228 (432)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH-HHHHHhcCCCCchHHH-------h-------------h
Confidence 88888888776554421 0127999999988777665 3334444555543210 0 0
Q ss_pred cccCccchhhhccchhHHHHHHHHHH-HHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy10491 250 LKASSIPWGDIVKSGPFLSILVAHMG-QNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFI 328 (520)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 328 (520)
.++..++++++++|+.+...+...+ ....++.+..|+|.|+++.+|++..+.+...+...+...++.++.|+++||++
T Consensus 229 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~g 307 (432)
T PRK10406 229 -LKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIG 307 (432)
T ss_pred -hcccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0012346778888888776665544 36677788899999998888999888888888888888888999999999999
Q ss_pred hhccccccchhhhhhhhhchhhhhhhh-hh--hccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHH
Q psy10491 329 RKKILSTGATRKLMTSIGEYGPGLMFI-IP--VILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSIT 404 (520)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~ 404 (520)
||+.+. +...+..+... .. ....+..........++.+..+...+....+..|.+|++ |++++|+.
T Consensus 308 rr~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~ 377 (432)
T PRK10406 308 RRTSML----------CFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLS 377 (432)
T ss_pred chHHHH----------HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHH
Confidence 988652 22221111111 11 111112222222222222222233344556677888876 99999999
Q ss_pred HHHHhh-HHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHh
Q psy10491 405 NCSANV-VGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLF 455 (520)
Q Consensus 405 ~~~~~~-g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (520)
+...++ .+...|.+.+.+.+ ...+...++..+++.+++.+..++.
T Consensus 378 ~~~g~~~~g~~~p~~~~~l~~------~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 378 YAVANALFGGSAEYVALSLKS------IGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHHHHhHHHHHHHHHHH------hCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 988765 34557777775533 2335556666666666666665554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=307.08 Aligned_cols=383 Identities=16% Similarity=0.136 Sum_probs=294.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcc
Q psy10491 26 GLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSH 105 (520)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr 105 (520)
+++++|.++.++++..+.+.++...++...|.+. +++|.++.+.|++.+++.++..+++++.|+++||+|||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r 80 (406)
T PRK11551 9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMA--------QEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRK 80 (406)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3457888888899999999999999999999999 89999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhh
Q psy10491 106 KMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPV 184 (520)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l 184 (520)
+++..+.++..++.+++++++ ++ .+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 158 (406)
T PRK11551 81 RILIVSVALFGLFSLATAQAW--DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI 158 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988886 66 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhcc--
Q psy10491 185 SGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVK-- 262 (520)
Q Consensus 185 ~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 262 (520)
++.+.+. .+||+.|++.+++.++..++..+++||++++.++...++. ++...+..++
T Consensus 159 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ 217 (406)
T PRK11551 159 GVLAAGD---AAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQ------------------RAPVLRALFGEG 217 (406)
T ss_pred HHHHccc---cCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchh------------------hhhhHHHHhhhh
Confidence 9888776 8999999998877777666666778887653221110000 0001111121
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhh
Q psy10491 263 -SGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKL 341 (520)
Q Consensus 263 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 341 (520)
.++.+...+..++.....+....+.|.++++ .|+++.+.+.+.+...++.++++++.|++.||+++|+.+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-------- 288 (406)
T PRK11551 218 RATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVV-------- 288 (406)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------
Confidence 2233444444555555666777889999988 599999999999999999999999999999999998876
Q ss_pred hhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHH
Q psy10491 342 MTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISG 420 (520)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g 420 (520)
..+.....+++..+...++.....+..++.+. ......+....+..+..|++ |+++.|+.+....+|..++|.+.|
T Consensus 289 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g 365 (406)
T PRK11551 289 --LLIYAGILASLAALAAAPSFAGMLLAGFAAGL-FVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAG 365 (406)
T ss_pred --HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHh
Confidence 23333334444444433322222223333333 33334455555666666655 999999999999999999999999
Q ss_pred HhhccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 421 LLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 421 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
.+.+ ...++...++....+.+++.++.+...
T Consensus 366 ~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 366 QLLA-----LGRSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred hhhc-----cCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998 124566667777666666666655543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=312.10 Aligned_cols=372 Identities=15% Similarity=0.089 Sum_probs=293.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhH
Q psy10491 29 YRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKML 108 (520)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l 108 (520)
++|..+..++++.++..+|.+.++.++|.+. +++|.+.++.+|+.+.|.+++.++.+++|+++||+|||+++
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~--------~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l 74 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLS--------MTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLL 74 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 4677888999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhc-CCCcchhHHHHHHHHhHHHHHHhhhhhh
Q psy10491 109 AYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWI-PPGERSFLGGIVYSGAQFGTIISYPVSG 186 (520)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~~G~~~g~~l~~ 186 (520)
+++.++++++++++++++ ++ .++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|..+||++++
T Consensus 75 ~~~~~~~~~~~~~~~~a~--~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg 152 (495)
T PRK14995 75 MLGGTLFGLASLAAAFSP--TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGG 152 (495)
T ss_pred HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999996 67 9999999999999998888888887776 6789999999999999999999999999
Q ss_pred hhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CChHHHHH----------HHhhccCC-----------
Q psy10491 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKR-VSVEEKEY----------ILYSIFGG----------- 244 (520)
Q Consensus 187 ~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~----------~~~~~~~~----------- 244 (520)
.+.++ .||||.|++...+.++..++..+++|+++++..+ .+...... ..+.....
T Consensus 153 ~l~~~---~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 229 (495)
T PRK14995 153 ILLEH---FYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTL 229 (495)
T ss_pred Hhhcc---CChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHH
Confidence 99998 8999999999888888777777888886543322 11111000 00000000
Q ss_pred ----------ccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHH
Q psy10491 245 ----------DIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMF 314 (520)
Q Consensus 245 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ 314 (520)
..+|.+..++....+++|+|.++...+..++......+...++|.|+++.+|+++.++|+...+..++..
T Consensus 230 ~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~ 309 (495)
T PRK14995 230 LTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASG 309 (495)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 0011222233334678899999888888888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccC--CChHH-HHHHHHHHHHHhhccccccce-eec
Q psy10491 315 ITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILG--FTHTP-TIVCLILAMACNGGIYAGFKV-NHI 390 (520)
Q Consensus 315 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~ 390 (520)
++.++.|++.||+++|+.+ ..+..+..++...+.... .+.+. ....++.+.+. +...+.... ...
T Consensus 310 ~~~~~~g~l~~r~g~~~~~----------~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~-g~~~~~~~~~~~~ 378 (495)
T PRK14995 310 FSGPIAGILVSRLGLRLVA----------TGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSA-ASALLASTSAIMA 378 (495)
T ss_pred HHHHHHHHHHHHcCchHHH----------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhH-HHHHHHHHHHHHh
Confidence 9999999999999998765 455555554444333222 22222 23333344443 344443333 344
Q ss_pred cCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 391 DISPCFAGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 391 ~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
.+++++++.+.++.++..++|+.+|+.+.|.+.+
T Consensus 379 ~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 379 AAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred cCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455669999999999999999999999999875
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=310.40 Aligned_cols=403 Identities=16% Similarity=0.200 Sum_probs=287.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM 107 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~ 107 (520)
+++|.++..+++.+...+.++..++...|.+. ++ |++..+.|++.+++.+++.+++++.|+++||+|||++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~--------~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~ 95 (452)
T PRK11273 25 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV--------EQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF 95 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------Hc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchh
Confidence 34566666677777788888888888889887 66 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHh--hhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHH-Hhhh
Q psy10491 108 LAYGMVVNAVFALLVPVSS--QSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTI-ISYP 183 (520)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~--~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~-~g~~ 183 (520)
++++.++.+++.+++++++ ..++ .+++.|++.|++.+...+.....+.|++|+++|++++++++.+.++|.. .+++
T Consensus 96 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l 175 (452)
T PRK11273 96 LPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLL 175 (452)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999888762 1245 8899999999999988888888999999999999999999999999874 4555
Q ss_pred hhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccc-hhhhcc
Q psy10491 184 VSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIP-WGDIVK 262 (520)
Q Consensus 184 l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 262 (520)
++..+... .+||+.|++.+++.++..++.++++||+|++....++++.+....+.. ....+++...+.. .+.++|
T Consensus 176 ~~~~~~~~---~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (452)
T PRK11273 176 FLLGMAWF---NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDY-NEKHEQELTAKQIFMQYVLP 251 (452)
T ss_pred HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhcccccc-ccccCCCccHHHHHHHHHHc
Confidence 44344333 599999999998888877777888888776532221111100000000 0000000000111 133678
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHh--hccccccchhh
Q psy10491 263 SGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIR--KKILSTGATRK 340 (520)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~--~~~~~~~~~~~ 340 (520)
+|.+|...+..++.+...++...++|.|+++..|++..+++.+..+..++.+++.++.|+++||+++ |....
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~------ 325 (452)
T PRK11273 252 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG------ 325 (452)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHH------
Confidence 8999998888888888888888999999999889999999999888999999999999999999954 32220
Q ss_pred hhhhhhchhhhhhhhhhhccC-CChHHH-HHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHHhH-HH
Q psy10491 341 LMTSIGEYGPGLMFIIPVILG-FTHTPT-IVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVGML-AP 416 (520)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i-~~ 416 (520)
.....+..++...+.... .+.... +..+.++.+.. ...........+..|+ .+|+++|+.+...++|+.+ +|
T Consensus 326 ---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~ 401 (452)
T PRK11273 326 ---VFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAS 401 (452)
T ss_pred ---HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhh
Confidence 111222222222222211 122222 22222222221 1111222334466665 5999999999999998765 79
Q ss_pred HHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10491 417 TISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGR 459 (520)
Q Consensus 417 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (520)
.+.|.+.| ..+|+..|++++++++++++....+.+.+
T Consensus 402 ~v~g~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 438 (452)
T PRK11273 402 AIVGYTVD------FFGWDGGFMVMIGGSILAVILLIVVMIGE 438 (452)
T ss_pred hhHHHHHH------HhcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999 56799999999888888877776655443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=304.78 Aligned_cols=392 Identities=23% Similarity=0.340 Sum_probs=302.7
Q ss_pred HHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHH
Q psy10491 40 GMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFA 119 (520)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~ 119 (520)
+++..++|+..++...|.+. +++|.+..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~--------~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 73 (399)
T TIGR00893 2 VTVINYLDRANLSFAAPMLQ--------EDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFT 73 (399)
T ss_pred eehHHHHHHHhhhHhHHHHH--------HhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHH
Confidence 34567788889999999988 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcc
Q psy10491 120 LLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWP 198 (520)
Q Consensus 120 ~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr 198 (520)
+++++++ ++ .++++|++.|++.+...+...+++.|++|+++|++++++.+....+|.++++++++.+.+. .+||
T Consensus 74 ~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~ 148 (399)
T TIGR00893 74 GLQAFAG--AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH---FSWQ 148 (399)
T ss_pred HHHHHHc--CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh---CCch
Confidence 9999986 66 9999999999999999999999999999999999999999999999999999999998887 8999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhcc-CCccccccccCccchhhhccchhHHHHHHHHHHHH
Q psy10491 199 AIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIF-GGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQN 277 (520)
Q Consensus 199 ~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (520)
+.|++.+++.++..++.++..||++++.+...+++++...+... +...++.++..+...++.+++|+++...+..++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (399)
T TIGR00893 149 WAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVN 228 (399)
T ss_pred HHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHH
Confidence 99999988888766666667777765443333322221111111 11111122233455678889999999999999999
Q ss_pred HHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhh
Q psy10491 278 FGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIP 357 (520)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (520)
.....+..+.|.|+++.+|.++.+.+.+.+...++.+++.++.+++.||+++|+...... ......+..+..+.....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 306 (399)
T TIGR00893 229 IGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFA--RKTAIIAGLVLSLLMFAT 306 (399)
T ss_pred hHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH--HHHHHHHHHHHHHHHHHh
Confidence 999999999999999888999999999999999999999999999999999996221100 000011111111111111
Q ss_pred hccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccch-hH
Q psy10491 358 VILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLS-WK 435 (520)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~-~~ 435 (520)
.. .+..+.......++.+..+ ..+....+..+..|++ |++++|+.+.+.++|..++|.+.|.+.+ ..+ |.
T Consensus 307 ~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~------~~g~~~ 378 (399)
T TIGR00893 307 NY-VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA------TTGSFA 378 (399)
T ss_pred cc-chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhcc------CCCchh
Confidence 11 1122333333334443333 5666677777777765 9999999999999999999999999999 445 88
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10491 436 VVFLVSAVLYITCATVYLL 454 (520)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~ 454 (520)
..+++.+++.+++.+..+.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 379 GALMVVAALALIGALSYLL 397 (399)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888777766543
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=299.46 Aligned_cols=375 Identities=15% Similarity=0.151 Sum_probs=282.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM 107 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~ 107 (520)
...|.....++++.+..... ..+++.+|.+. +|+|+|.++.|++.+++.+++.+++++.|+++||+|||++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~--------~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~ 76 (393)
T PRK09705 6 PLNFMLLVLVLIGLNMRPLL-TSVGPLLPQLR--------QASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRS 76 (393)
T ss_pred chHHHHHHHHHHHHHcchhh-hccchhHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHH
Confidence 34455555555555544433 66788999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhh
Q psy10491 108 LAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG 186 (520)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~ 186 (520)
+..++.+++++.+++++++ ++ .++++|+++|++.+...+....++.+++| ++|+++++++..+...|..+|+.+++
T Consensus 77 l~~~~~l~~~~~~~~~~a~--~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~ 153 (393)
T PRK09705 77 VAISLLLIAVGALMRELYP--QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITP 153 (393)
T ss_pred HHHHHHHHHHHHHHHHHCc--chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 77 99999999999999999999999999996 88999999999999999999999999
Q ss_pred hhhccccccCcchHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchh
Q psy10491 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYE-NPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGP 265 (520)
Q Consensus 187 ~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (520)
.+.++. .+||+.+.+.++..++ .++.++...+ .|+.++ +. +...++.+++|+
T Consensus 154 ~l~~~~--~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------------------~~---~~~~~~~l~~~~ 206 (393)
T PRK09705 154 WLVQHS--ETWYQTLAWWALPAVV-ALFAWWWQSAREVASSH---------------------KT---TTTPVRVVFTPR 206 (393)
T ss_pred HHHHhc--CCHHHHHHHHHHHHHH-HHHHHHHHhcCCCcccc---------------------CC---CcCCcccccCHh
Confidence 988761 3899998776666544 2333332222 111100 00 011244567888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhh
Q psy10491 266 FLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSI 345 (520)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 345 (520)
.|.+.+..++....+.....|+|.++++ +|.+..+++...++.+++.++++++.+++.||+++|+.. ..
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~----------~~ 275 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLL----------ML 275 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHH----------HH
Confidence 8888777777788888899999999988 699999999999999999999999999999999998775 34
Q ss_pred hchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeec-cCCCC-cchhHHHHHHHHHhhHHhHHHHHHHHhh
Q psy10491 346 GEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHI-DISPC-FAGILMSITNCSANVVGMLAPTISGLLL 423 (520)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 423 (520)
+..+..++...+...+..... ....+.+.+. +...+....... ...|+ ++|+.+|+.+...++++.++|.+.|++.
T Consensus 276 ~~~l~~~~~~~~~~~~~~~~~-~~~~l~g~g~-g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~ 353 (393)
T PRK09705 276 ALVLQLVGFCGFIWLPLQLPV-LWAMVCGLGL-GGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR 353 (393)
T ss_pred HHHHHHHHHHHHHHccchHHH-HHHHHHHHhc-cchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333322222 2222223332 333333333333 33343 4999999999999999999999999999
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10491 424 NWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGR 459 (520)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (520)
|. ..+|...|.+..++.++..++.+.+..++
T Consensus 354 ~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (393)
T PRK09705 354 SI-----SGNYLMDWAFHALCVVGLMIITLRFAPAR 384 (393)
T ss_pred HH-----hCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 92 23588888888887777776666555443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=297.12 Aligned_cols=358 Identities=14% Similarity=0.075 Sum_probs=266.6
Q ss_pred HHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHH
Q psy10491 44 AYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVP 123 (520)
Q Consensus 44 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~ 123 (520)
+......+++.+|.+. +|+|+|..+.|++.+++.+++.+++++.|+++||+|||+++..++.....+.+ ..
T Consensus 3 ~~~~~~~~~~~lp~i~--------~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~ 73 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVA--------EDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RL 73 (368)
T ss_pred hhHHHHHHHhhHHHHH--------HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HH
Confidence 3445567888999999 89999999999999999999999999999999999999887665555544433 33
Q ss_pred hHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHH
Q psy10491 124 VSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFY 202 (520)
Q Consensus 124 ~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~ 202 (520)
.. ..++ .++++|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.++++++++.+.++ .|||+.|+
T Consensus 74 ~~-~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~---~gWr~~f~ 148 (368)
T TIGR00903 74 LD-PFNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA---GGLQLLII 148 (368)
T ss_pred HH-hccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHH
Confidence 33 1277 999999999999985 566677779999999999999999999999999999999999887 89999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHH
Q psy10491 203 VFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYET 282 (520)
Q Consensus 203 i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (520)
+.++++++..++.++.+||+|++.++.... + +...++++++++|.+|.+.+..++....+++
T Consensus 149 ~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~-~-----------------~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 210 (368)
T TIGR00903 149 PIAAVAAAGIILVLAALPALPFQAAEGFGF-K-----------------DAVKEFGALAGRKDLWIIGAILGFGVALFDN 210 (368)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCcch-H-----------------HHHHHHHHHHcChhHHHHHHHHHHHHHHHHH
Confidence 999998887888888899987653211000 0 0012367889999999999999999999999
Q ss_pred HHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCC
Q psy10491 283 LMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGF 362 (520)
Q Consensus 283 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (520)
+.+|+|.|+++ .|++.. .+.......+.+.++ .++++||..|++... ........+.++....+....+
T Consensus 211 ~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~------~~~~~~~~~~a~~~~~~~~~~~ 279 (368)
T TIGR00903 211 LAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRS------IYIRAAALLIAAFFLALAFELN 279 (368)
T ss_pred HHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHH------HHHHHHHHHHHHHHHHHHHccc
Confidence 99999999977 588764 555555555555544 477888876542110 0011122222333333333322
Q ss_pred ChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHH
Q psy10491 363 THTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVS 441 (520)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~ 441 (520)
....+....+..++.....+....+..|++|++ ||+++|+.+..+++++..+|.+.+.+.. +....|.+.
T Consensus 280 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--------~~~~~f~~~ 350 (368)
T TIGR00903 280 -RLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--------SAEAYFTFL 350 (368)
T ss_pred -cHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--------CHHHHHHHH
Confidence 223333333344444445555667788988886 9999999999999999999999988875 566778888
Q ss_pred HHHHHHHHHHHH
Q psy10491 442 AVLYITCATVYL 453 (520)
Q Consensus 442 ~~~~~~~~~~~~ 453 (520)
++..+++.+..+
T Consensus 351 ~~~~~i~~~~~~ 362 (368)
T TIGR00903 351 AILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHHH
Confidence 888887777664
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=278.83 Aligned_cols=383 Identities=15% Similarity=0.162 Sum_probs=327.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM 107 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~ 107 (520)
+.+++.+.+..++...+++....++++.+.+. +++|+|+.|.+++.++..+..++..++.|.+.||+|.|++
T Consensus 10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~--------~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~ 81 (417)
T COG2223 10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIK--------SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKW 81 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHH
Confidence 44566677788888888999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhh-HH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhh
Q psy10491 108 LAYGMVVNAVFALLVPVSSQS-IW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVS 185 (520)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~-~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~ 185 (520)
..+++++..+.++..+++.++ ++ ++++++++.|++ |+.+.+....++.|+|||++|.++|+.. ..++|..+...++
T Consensus 82 ~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~ 159 (417)
T COG2223 82 TILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVA 159 (417)
T ss_pred HHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHH
Confidence 999999999999999998433 34 999999999999 5678999999999999999999999999 8899999999999
Q ss_pred hhhhccccccC---cchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCc-cchhhhc
Q psy10491 186 GYLAYGTFLQG---WPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASS-IPWGDIV 261 (520)
Q Consensus 186 ~~l~~~~~~~g---wr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 261 (520)
..+... .+ ||....+..+..++..++.++.+.|.|+.+...+ +.. ...+.++
T Consensus 160 P~v~~~---~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~---------------------~~~~~~~~~v~ 215 (417)
T COG2223 160 PLVAVA---FGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVK---------------------PQLPAQLKAVF 215 (417)
T ss_pred HHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccc---------------------ccchhHHHHHh
Confidence 998887 67 9999999999988888899999988877422111 111 4567788
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhh
Q psy10491 262 KSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKL 341 (520)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 341 (520)
++++.|.+++.++..+.++.++..++|.|+++++|.++.++|.+.....+.+.+.++++|+++||+|.+|..
T Consensus 216 ~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~-------- 287 (417)
T COG2223 216 SNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVT-------- 287 (417)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHH--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhhchhhhhhhhhhhccC------CChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHH
Q psy10491 342 MTSIGEYGPGLMFIIPVILG------FTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLA 415 (520)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~ 415 (520)
...+..+.++...+.... .+.......++....+.+......+-.+...+|++.|.+.|+....+.+|+..-
T Consensus 288 --~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~l 365 (417)
T COG2223 288 --LAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFL 365 (417)
T ss_pred --HHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccch
Confidence 344455555544444443 233555555555566667777778888888899999999999999999999999
Q ss_pred HHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10491 416 PTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGR 459 (520)
Q Consensus 416 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (520)
|...|...+ ....+...|+++..+.+++.+..+....++
T Consensus 366 p~~~g~~~~-----~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 366 PLAFGVSLD-----LTGSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred hHHHHHHHH-----hcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999 234699999999999999988777665443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=290.95 Aligned_cols=367 Identities=13% Similarity=0.124 Sum_probs=276.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHH
Q psy10491 30 RHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLA 109 (520)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~ 109 (520)
.|+.+..+.++.+............+|.+. +++|+++++.|+..+++.++..+++++.|+++||+|||+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~ 89 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMA--------QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVI 89 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHH
Confidence 555555566665555556556666788888 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhh
Q psy10491 110 YGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYL 188 (520)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l 188 (520)
.+.++.+++.+++++++ ++ .+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l 167 (394)
T PRK10213 90 LFAVLLTLSCLLVSFAN--SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFL 167 (394)
T ss_pred HHHHHHHHHHHHHHHHC--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998885 66 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHH
Q psy10491 189 AYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLS 268 (520)
Q Consensus 189 ~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (520)
.+. .|||+.|++.++++++..+.....+||++++.++ .....++.+++|+++.
T Consensus 168 ~~~---~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~------------------------~~~~~~~~l~~~~~~~ 220 (394)
T PRK10213 168 GEL---IGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSH------------------------QKQNTFRLLQRPGVMA 220 (394)
T ss_pred Hhh---cCHHHHHHHHHHHHHHHHHHHHHHCCCCCccccc------------------------chhHHHHHhcCHHHHH
Confidence 987 8999999998877766444444455664321100 0112356788999888
Q ss_pred HHHHHHHHHHHHHHHHHHh-HHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhc
Q psy10491 269 ILVAHMGQNFGYETLMTML-PTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGE 347 (520)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 347 (520)
..+..++..........+. |.|. +.+|+++.+.+.+....+++.+++.++.+++.||.+++... ....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~----------~~~~ 289 (394)
T PRK10213 221 GMIAIFMSFAGQFAFFTYIRPVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALA----------GAPL 289 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH----------HHHH
Confidence 7776666666666666676 5555 45699999999999999999999999999999995443222 1222
Q ss_pred hhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhcccc
Q psy10491 348 YGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQ 427 (520)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~ 427 (520)
......+...... ++.+......++.++..+...+.......+..|++++++.++.....++|..+||.+.|++.|
T Consensus 290 ~~~~~~~~l~~~~-~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~--- 365 (394)
T PRK10213 290 VLAVSALVLTLWG-SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALD--- 365 (394)
T ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 2222222222222 233333333333333445555555555555667777788888888889999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHH
Q psy10491 428 HDEMLSWKVVFLVSAVLYITCATV 451 (520)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~ 451 (520)
..++...+...+++.++..+.
T Consensus 366 ---~~g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 366 ---NIGLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred ---ccChhhHHHHHHHHHHHHHHH
Confidence 567777777777655554433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=294.60 Aligned_cols=380 Identities=12% Similarity=0.133 Sum_probs=293.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM 107 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~ 107 (520)
..|+++...+++++++...+...++..+|.+. +++|+|.++.+++.+.+.+++.+++++.|++.||+|||++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~--------~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~ 74 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIA--------EYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQ 74 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34566777788889999999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhh
Q psy10491 108 LAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG 186 (520)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~ 186 (520)
+..+.++.+++.+++++++ ++ .+++.|+++|++.+...+...+++.|++|+++|+++++..+....+|..++|.+.+
T Consensus 75 ~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 152 (394)
T PRK03699 75 LIFGFALMILAVAGLMFSH--SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAA 152 (394)
T ss_pred HHHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999985 66 99999999999999888999999999999999999999999999999999999988
Q ss_pred hhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhH
Q psy10491 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPF 266 (520)
Q Consensus 187 ~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (520)
.+.... .+||+.|++.+++.++..++.++ .+.|+..++.+++ .++.. ++ ..++.+
T Consensus 153 ~l~~~~--~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~----------------~~~~~----~~-~~~~~~ 207 (394)
T PRK03699 153 YLLARS--IEWYWVYACIGLVYVAIFILTLF--SEFPALGKHAPKA----------------DKPVA----KE-KWGIGV 207 (394)
T ss_pred HHHhcc--ccHHHHHHHHHHHHHHHHHHHHh--cCCccccccCccc----------------cCccc----cc-cCChHH
Confidence 876431 69999999988877664433322 2222211110000 00000 11 124567
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhh
Q psy10491 267 LSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIG 346 (520)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 346 (520)
+...+..++.......+..|+|.|+++.+|+++.+++.+.+...++..+++++.+++.||+++|+.+ ...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l----------~~~ 277 (394)
T PRK03699 208 LFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRIL----------TVL 277 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHH----------HHH
Confidence 7777777777777788889999999888899999999999999999999999999999999999876 233
Q ss_pred chhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhccc
Q psy10491 347 EYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWF 426 (520)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 426 (520)
..+..+.+..+...++..+.....+..+. +.+..++.......+..|++++...|......++|..++|.+.|++.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~-- 354 (394)
T PRK03699 278 AGLALVLMYLFVNTDDPSHLLYAILGLGF-FSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVA-- 354 (394)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHH--
Confidence 33333333333333333333333333333 334444555555566667777888899999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10491 427 QHDEMLSWKVVFLVSAVLYITCATVYLLFSSGR 459 (520)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (520)
..+++..++..+++.+++.++++...+..
T Consensus 355 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (394)
T PRK03699 355 ----HFGLQAALLTANGLYAVVFVMCILLGFVS 383 (394)
T ss_pred ----HhCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888776666655443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=298.06 Aligned_cols=368 Identities=15% Similarity=0.157 Sum_probs=283.5
Q ss_pred HHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHH
Q psy10491 34 TFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMV 113 (520)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~ 113 (520)
....++...+.......+++..|.+. +++|++.++.|++.+++.+++.+++++.|+++||+|||+++.++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~ 76 (377)
T TIGR00890 5 VLVGTVIMCFTSGYVYTWTLLAPPLG--------RYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGI 76 (377)
T ss_pred EeHHHHHHHHHhhHHhhhhhHHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHH
Confidence 33344444444455677888999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccc
Q psy10491 114 VNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGT 192 (520)
Q Consensus 114 ~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~ 192 (520)
+.+++.+++++++ ++ .++++|++.|++.+...+.....+.+++| ++|+++.++...+.++|..+++++.+.+.+.
T Consensus 77 ~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~- 152 (377)
T TIGR00890 77 LYGLGFTFYAIAD--SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL- 152 (377)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc-
Confidence 9999999999996 77 99999999999999888888889999995 6899999999999999998877777777766
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHH
Q psy10491 193 FLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVA 272 (520)
Q Consensus 193 ~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (520)
.+||+.|++.+++.++..++.++++++++++..+.+. +.+.+....++.+++|+++...+.
T Consensus 153 --~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~ 213 (377)
T TIGR00890 153 --EGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI-----------------EVSVKDYTVWEMLRTPQFWVLYLS 213 (377)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCc-----------------ccchhhhhHHHHHcCccHHHHHHH
Confidence 7999999999998888777767676665432211100 001111234677888888887777
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhh
Q psy10491 273 HMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGL 352 (520)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 352 (520)
.++..........+.+.|.++ +|.+..+.+.+.+...++.++++++.|++.||++||+.+ .++..+..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~----------~~~~~~~~~ 282 (377)
T TIGR00890 214 FFLNAVSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTM----------SIVFGISAV 282 (377)
T ss_pred HHHHhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----------hHHHHHHHH
Confidence 777666666666677777766 688888889999999999999999999999999999876 455555555
Q ss_pred hhhhhhccCCCh-HHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccc
Q psy10491 353 MFIIPVILGFTH-TPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDE 430 (520)
Q Consensus 353 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~ 430 (520)
+.......+... ..............+...+.......|..|++ |+++.|+.+...++|..++|.+.|.+.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~------ 356 (377)
T TIGR00890 283 GMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT------ 356 (377)
T ss_pred HHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 554444443222 22222222223333444444555566666555 9999999999999999999999999998
Q ss_pred cchhHHHHHHHHHHHHHHH
Q psy10491 431 MLSWKVVFLVSAVLYITCA 449 (520)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~ 449 (520)
..+|+..|.+.+++.+++.
T Consensus 357 ~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 357 EIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hhchhhHHHHHHHHHHHhc
Confidence 5689999988887776654
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=304.60 Aligned_cols=418 Identities=14% Similarity=0.084 Sum_probs=285.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcc
Q psy10491 26 GLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSH 105 (520)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr 105 (520)
-.+++++++.++.++.+.+++|...++...|.+...... .+.+.+..+.+++.+.+.+++.++++++|+++||+|||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr 86 (502)
T TIGR00887 10 FGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYH---GKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRK 86 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 345677788889999999999999999988877631110 13455677889999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhh----HH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHH
Q psy10491 106 KMLAYGMVVNAVFALLVPVSSQS----IW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTII 180 (520)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~~----~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~ 180 (520)
+++.+++++..++.+++++++.+ ++ .++++|+++|++.|...+....+++|++|+++|++++++.+....+|.++
T Consensus 87 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~ 166 (502)
T TIGR00887 87 RVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILA 166 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887410 26 99999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccc--------------------cccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--CChHHHHHHH
Q psy10491 181 SYPVSGYLAYGT--------------------FLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKR--VSVEEKEYIL 238 (520)
Q Consensus 181 g~~l~~~l~~~~--------------------~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~--~~~~~~~~~~ 238 (520)
++.++..+.... .+.+||++|.+.++++++ ..+..+++||+|++... .++++..+..
T Consensus 167 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i-~~~~~~~lpESpr~l~~~~~~~~~a~~~~ 245 (502)
T TIGR00887 167 GAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALL-ALYFRLTIPETPRYTADVAKDVEQAASDM 245 (502)
T ss_pred HHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHH-HHHHHHhCCCCHHHHHHhCcchHHHHHHH
Confidence 998887654210 014799999888777766 55567789999987422 1112122111
Q ss_pred hhccC----Ccccc------ccccCccchhhhccc---hhH----HHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcch
Q psy10491 239 YSIFG----GDIIE------DLKASSIPWGDIVKS---GPF----LSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIK 301 (520)
Q Consensus 239 ~~~~~----~~~~~------~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 301 (520)
.+..+ ...++ +++..+.++++++++ ++. +......+...+.+++...+.|.++++ .|++...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~ 324 (502)
T TIGR00887 246 SAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPA 324 (502)
T ss_pred HHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCc
Confidence 11110 00000 001112356777653 222 222233344455566777788999976 4887553
Q ss_pred hHH------------HHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccC---CChHH
Q psy10491 302 NGL------------ISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILG---FTHTP 366 (520)
Q Consensus 302 ~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 366 (520)
.+. ......++.+++.++.+++.||+|||+.+ .++..+..+++..+.... .....
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l----------~~~~~~~~~~~~~l~~~~~~~~~~~~ 394 (502)
T TIGR00887 325 ATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQ----------LMGFFILTVLFFVLGFAYNHLSTHGF 394 (502)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHH----------HHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 221 22334456677888999999999999876 334444333333332211 11111
Q ss_pred HHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccc----cccchhHHHHHHH
Q psy10491 367 TIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQH----DEMLSWKVVFLVS 441 (520)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~----~~~~~~~~~~~~~ 441 (520)
.....+...+......+....+..|++|.+ |+++.|+.+.++.++++++|.+.+.+.+..+. ....++...|++.
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~ 474 (502)
T TIGR00887 395 LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIF 474 (502)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHH
Confidence 122222222223344555667778999988 99999999999999999999999999871100 0023456677888
Q ss_pred HHHHHHHHHHHHHhcCC
Q psy10491 442 AVLYITCATVYLLFSSG 458 (520)
Q Consensus 442 ~~~~~~~~~~~~~~~~~ 458 (520)
+++.+++.+..++++++
T Consensus 475 ~~~~~~~~i~~~~lpEt 491 (502)
T TIGR00887 475 ALFMFLGILFTLLIPET 491 (502)
T ss_pred HHHHHHHHHHheEeccC
Confidence 87777776655544443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=306.48 Aligned_cols=397 Identities=15% Similarity=0.146 Sum_probs=285.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcc
Q psy10491 26 GLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSH 105 (520)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr 105 (520)
...++|.++..+++.....+.+...++...|.+. +++|++.++.+++.+.+.++..++.++.|+++||+|||
T Consensus 13 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r 84 (455)
T TIGR00892 13 DGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQ--------QIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCR 84 (455)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHH--------HHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCch
Confidence 3456788888888777777777777888899998 89999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhhHH-HHH-HHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhh
Q psy10491 106 KMLAYGMVVNAVFALLVPVSSQSIW-CLA-AVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYP 183 (520)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~~~~-~l~-~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~ 183 (520)
++++.+.++.+++.+++++++ ++ .++ ..|+++|++.+...+...+++.++++ ++|++++++.+.+..+|..++|+
T Consensus 85 ~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~ 161 (455)
T TIGR00892 85 PVVIAGGLLASLGMILASFSS--NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAP 161 (455)
T ss_pred HHHHhhHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHH
Confidence 999999999999999999985 55 554 56799999998877788889999995 78999999999999999999999
Q ss_pred hhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCcc----ccccccCccchhh
Q psy10491 184 VSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDI----IEDLKASSIPWGD 259 (520)
Q Consensus 184 l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 259 (520)
+++.+.+. .|||+.|++.+++.++..+..++..++.+..... +.++++. ......... ...++..+....+
T Consensus 162 l~~~l~~~---~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (455)
T TIGR00892 162 LNQYLFES---FGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVS-KSKSKEG-LPPDGSTKKLSKKSTAEKINRFLDFS 236 (455)
T ss_pred HHHHHHHH---hChHHHHHHHHHHHHHHHHHHHHhCCCCcccccc-ccccccc-CCCCCccccccccchhhhhhhhcchH
Confidence 99999887 8999999999988876555444443432211000 0000000 000000000 0000001111135
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHH--Hhhccccccc
Q psy10491 260 IVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYF--IRKKILSTGA 337 (520)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~~~~ 337 (520)
++++|+++...+..++...+......++|.|+++ .|++..+++.+.++.+++.++++++.+++.||. ++++...
T Consensus 237 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~--- 312 (455)
T TIGR00892 237 LFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYL--- 312 (455)
T ss_pred HhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHH---
Confidence 7889999988888888788878888899999987 599999999999999999999999999999973 2232220
Q ss_pred hhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHHhHHH
Q psy10491 338 TRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVGMLAP 416 (520)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~ 416 (520)
...+..+.++..+...... +.+..+...++.++..+...+.......+..|+ ++++++|+.+...++|++++|
T Consensus 313 -----~~~~~~~~~l~~ll~~~~~-~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp 386 (455)
T TIGR00892 313 -----FSFALLFNGLTHLLCALAG-DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGP 386 (455)
T ss_pred -----HHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccc
Confidence 1222222233333333333 333333333333333444455555555555554 599999999999999999999
Q ss_pred HHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy10491 417 TISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYL 453 (520)
Q Consensus 417 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (520)
.+.|.+.+. ..+|+..|++.+++.+++.+...
T Consensus 387 ~i~G~l~~~-----~g~~~~~f~~~~~~~li~~~~~~ 418 (455)
T TIGR00892 387 PLAGRLVDA-----TKNYKYIFYASGSIVVSAGLFLA 418 (455)
T ss_pred cceeeeehh-----cCCcchHHHHhhHHHHHHHHHHH
Confidence 999999982 23588888888877776665433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=299.05 Aligned_cols=375 Identities=17% Similarity=0.142 Sum_probs=273.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM 107 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~ 107 (520)
+.++..+..++++++.+.++.....+..|.+. +++|+++.+.+++.+++.+++.+++++.|+++||+|||++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~ 85 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIK--------ADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPL 85 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence 45666778888999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhh
Q psy10491 108 LAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG 186 (520)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~ 186 (520)
+.++.++.+++.+++++++ ++ .++++|+++|++.+...+....++.|++|+++|++++++...+..+|.++++.+.+
T Consensus 86 l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~ 163 (426)
T PRK12307 86 MMWSIVAYSVGTGLSGLAS--GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMP 163 (426)
T ss_pred HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999996 66 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhH
Q psy10491 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPF 266 (520)
Q Consensus 187 ~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (520)
.+.+. .+||+.|++..+..++ .+......||++++.++ +. +. ..+......+.....+++++++|.+
T Consensus 164 ~l~~~---~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~~~~~-----~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (426)
T PRK12307 164 SFAEA---YGWRAAFFVGLLPVLL-VIYIRARAPESKEWEEA-----KL---SG-KGKHSQSAWSVFSLSMKGLFNRAQF 230 (426)
T ss_pred HHccc---CCHHHHHHHHHHHHHH-HHHHHHHCCCChHHHHh-----hh---hc-cccccccchhhhhHHHHHHHhhchH
Confidence 88887 8999999885433222 22222222333211100 00 00 0000000111112356778888877
Q ss_pred HHHHHHHH---HHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhh
Q psy10491 267 LSILVAHM---GQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMT 343 (520)
Q Consensus 267 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 343 (520)
+....... ........+..++|.|+++. |+++.+.+.+.+...++.++++++.|++.||++||+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~---------- 299 (426)
T PRK12307 231 PLTLCVFIVLFSIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTF---------- 299 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH----------
Confidence 65443322 22233344677899999884 99999999999999999999999999999999998875
Q ss_pred hhhchhhhhhhhhhhccCCChHHHHHHHHHHHHH-hhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHH
Q psy10491 344 SIGEYGPGLMFIIPVILGFTHTPTIVCLILAMAC-NGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGL 421 (520)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~ 421 (520)
..+.++..+..+.................++... .....+.......+..|++ +|+++|+.+...++++.++|.+.|+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~ 379 (426)
T PRK12307 300 SIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATW 379 (426)
T ss_pred HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHH
Confidence 3444443333333332222222222222222221 1222233444556777765 9999999999999999999999999
Q ss_pred hhccccccccchhHHHHHHHH
Q psy10491 422 LLNWFQHDEMLSWKVVFLVSA 442 (520)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~ 442 (520)
+.+ ..++....++..
T Consensus 380 l~~------~~g~~~~~~~~~ 394 (426)
T PRK12307 380 LGI------TMGLGAALTFIV 394 (426)
T ss_pred HHH------cccHHHHHHHHH
Confidence 998 455554433333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=295.58 Aligned_cols=391 Identities=15% Similarity=0.110 Sum_probs=272.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCC--CCChhhhHHHH-----HHHHHHHHHhhhhhhhh
Q psy10491 26 GLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSK--SWSTVERGLLL-----SSFFYGYVLTQIPIGLL 98 (520)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~s~~~~g~~~-----s~~~~~~~~~~~~~g~l 98 (520)
...+++......+++++++++|...++...|.+.. +++ +.++. .+++. ++..+++.+++++.|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l 87 (438)
T PRK09952 16 SLSRARRAALGSFAGAVVDWYDFLLYGITAALVFN-------REFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHF 87 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34455667778888999999999999988775431 333 45555 45553 35556778999999999
Q ss_pred hcccCcchhHHHHHHHHHHHHHHHHhHhhhHH---------HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHH
Q psy10491 99 TKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW---------CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGI 169 (520)
Q Consensus 99 ~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~---------~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~ 169 (520)
+||+|||+++.+++++++++++++++++ ++ .++++|+++|++.|+.++....++.|++|+++|++..+.
T Consensus 88 ~Dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~ 165 (438)
T PRK09952 88 GDRLGRKRMLMLTVWMMGIATALIGLLP--SFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSG 165 (438)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHH
Confidence 9999999999999999999999999996 43 388999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHhhhhhhhhhccc-----cccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCC
Q psy10491 170 VYSGAQFGTIISYPVSGYLAYGT-----FLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGG 244 (520)
Q Consensus 170 ~~~~~~~G~~~g~~l~~~l~~~~-----~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (520)
.+.+..+|.+++..+...+.... ...|||++|++.+++.++ .+.....+||+|++.++. ++. +
T Consensus 166 ~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~~~~~~~---~~~----~---- 233 (438)
T PRK09952 166 VQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESAEFEQQQ---HEQ----A---- 233 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHH---hhc----c----
Confidence 99999999999988777665310 127999999988776544 333334455654321110 000 0
Q ss_pred ccccccccCccchhhhccchhHHHHHH-HHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHH
Q psy10491 245 DIIEDLKASSIPWGDIVKSGPFLSILV-AHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYL 323 (520)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l 323 (520)
+.+.+....+.++++|+.+...+ ..++.....+....|.|.|+++.+|++......+....++...++.++.|++
T Consensus 234 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l 309 (438)
T PRK09952 234 ----AAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWL 309 (438)
T ss_pred ----cccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111233567777665544 4455566677788899999988889888766556666677788889999999
Q ss_pred HHHHHhhccccccchhhhhhhhhchhhhhhhhhhh--c-cCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chh
Q psy10491 324 ADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPV--I-LGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGI 399 (520)
Q Consensus 324 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~ 399 (520)
+||++||+.+ ..+.++..++..... . ..+.....+...++..+..+...+....+..|.+|.+ |++
T Consensus 310 ~Dr~grr~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~t 379 (438)
T PRK09952 310 ADRFGRRRVY----------ITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYS 379 (438)
T ss_pred HHHhCchHHH----------HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHH
Confidence 9999999876 233222222221111 1 1222223233333333333444555667777888776 899
Q ss_pred HHHHHHHHH-hhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 400 LMSITNCSA-NVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 400 ~~g~~~~~~-~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
+.|+.+... .+++.++|.+.+++.+.. ..+|...+...+++.+++.+..+..+
T Consensus 380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~----~~~~~~~~~~~~~~~~i~~v~~~~~~ 433 (438)
T PRK09952 380 GAGVGYQVASVVGGGFTPFIAAALVTYF----GGSWHSVAIYLLAGCLISAMTALLMK 433 (438)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHHHHHHHHcc
Confidence 999976664 489999999999998821 23577778888888887777766553
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=292.14 Aligned_cols=371 Identities=16% Similarity=0.188 Sum_probs=280.2
Q ss_pred HHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHH
Q psy10491 34 TFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMV 113 (520)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~ 113 (520)
+..+.+..+..........+.+|.+. +++|++.++.|++.+++.+++.++++++|+++||+|||+++.++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 76 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELA--------HDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVA 76 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHH--------HHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHH
Confidence 34556677777777778888999998 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccc
Q psy10491 114 VNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGT 192 (520)
Q Consensus 114 ~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~ 192 (520)
+.+++.+++++++ ++ .+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++++++.+.+.
T Consensus 77 ~~~~~~~l~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~- 153 (382)
T PRK10091 77 LCVIGNAMFTLSS--SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE- 153 (382)
T ss_pred HHHHHHHHHHHhC--cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh-
Confidence 9999999999996 66 9999999999999988888899999999999999999999999999999999999999887
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHH
Q psy10491 193 FLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVA 272 (520)
Q Consensus 193 ~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (520)
.+||+.|++.+++.++..+..++.+||.+++.+. +. + ...+.+|+++.+.....
T Consensus 154 --~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~----------------------~-~~~~~~~~~~~~~~~~~ 207 (382)
T PRK10091 154 --FSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKG-GL----------------------R-EQFHFLRSPAPWLIFAA 207 (382)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc-CH----------------------H-HHHHHhcChHHHHHHHH
Confidence 8999999999988877666666677775432110 00 0 01234577777766665
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhh
Q psy10491 273 HMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGL 352 (520)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 352 (520)
.++..........+++.++++.+|+++.+.+++.+..+++.++++++.+++.||+++++.. ..+..+..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~----------~~~~~~~~i 277 (382)
T PRK10091 208 TMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIA----------AVTDFIIVL 277 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHH----------HHHHHHHHH
Confidence 5555555555666778888877899999999999999999999999999999999998876 344444444
Q ss_pred hhhhhhccCCChHHHHH-HHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccc
Q psy10491 353 MFIIPVILGFTHTPTIV-CLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDE 430 (520)
Q Consensus 353 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~ 430 (520)
+.+.+....+..+.... ..+.+.+..+...+.......+..+++ ++.+ ..+...++|.++||.+.|.+.| .
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~-----~ 350 (382)
T PRK10091 278 ALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLT-----L 350 (382)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHH-----c
Confidence 44433332223222222 222222222222222222333333333 4443 4467789999999999999998 2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy10491 431 MLSWKVVFLVSAVLYITCATVYLLFSSG 458 (520)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (520)
..+|+..+.+.+++..+...+.....++
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (382)
T PRK10091 351 GLAYNYVALPAALLSFAAMSSLLLYGRY 378 (382)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 3678889888877777766655555443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=295.86 Aligned_cols=387 Identities=16% Similarity=0.172 Sum_probs=277.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcc
Q psy10491 26 GLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSH 105 (520)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr 105 (520)
..+++|..+..++++++.+.++...+++..|.+. +++|++..+.+++.+++.++..+++++.|+++||+|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r 77 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVA--------GEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRR 77 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3456788888999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhh
Q psy10491 106 KMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPV 184 (520)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l 184 (520)
+++.++.++.+++.+++++++ ++ .+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 155 (405)
T TIGR00891 78 LPMVTSIVLFSAGTLACGFAP--GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV 155 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986 67 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHH-HHHHHhhccCCcc--ccccccCccchhhhc
Q psy10491 185 SGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEE-KEYILYSIFGGDI--IEDLKASSIPWGDIV 261 (520)
Q Consensus 185 ~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 261 (520)
++.+.+..+ .+||+.|++.+++.++ .++....+||++++.++.+.++ .....++...... ++..+......++..
T Consensus 156 ~~~l~~~~~-~~w~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (405)
T TIGR00891 156 YSLVVPVWG-DGWRALFFISILPIIF-ALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSA 233 (405)
T ss_pred HHHHHHhcC-ccHHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhh
Confidence 999887610 2499999886655554 4445556677654321111110 0000000000000 000000000111111
Q ss_pred cc-h-hHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchh
Q psy10491 262 KS-G-PFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATR 339 (520)
Q Consensus 262 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 339 (520)
++ + .+....+..............++|.|+.+.+|++..+.+.+.+...++.++++++.+++.||+++|+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~------ 307 (405)
T TIGR00891 234 GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAY------ 307 (405)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh------
Confidence 11 1 122333333444445556677899999888899999999999999999999999999999999999876
Q ss_pred hhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHH
Q psy10491 340 KLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTI 418 (520)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~ 418 (520)
..+..+..+..........+.+.......+..++.....+.......+..|++ ||+++|+.+...++++.++|.+
T Consensus 308 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~ 383 (405)
T TIGR00891 308 ----VCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPII 383 (405)
T ss_pred ----HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHH
Confidence 23333322222211112223233333222222333344445555666766655 9999999999999999999999
Q ss_pred HHHhhccccccccch-hHHHHHH
Q psy10491 419 SGLLLNWFQHDEMLS-WKVVFLV 440 (520)
Q Consensus 419 ~g~l~~~~~~~~~~~-~~~~~~~ 440 (520)
.|.+.| ..+ |+..+..
T Consensus 384 ~g~l~~------~~g~~~~~~~~ 400 (405)
T TIGR00891 384 GALLAQ------RLDEYGTALAS 400 (405)
T ss_pred HHHHHH------hccccchhHHh
Confidence 999999 344 6655544
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=291.34 Aligned_cols=357 Identities=12% Similarity=0.086 Sum_probs=279.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcch
Q psy10491 27 LGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHK 106 (520)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~ 106 (520)
+++.++..+.+.+..+...+....+.+.+|.+. +++|.+..+.++..+.+.+++.+++++.|+++||+|||+
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~ 79 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVV--------EDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRP 79 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence 345567777777888888888888888899888 899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhh
Q psy10491 107 MLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVS 185 (520)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~ 185 (520)
++.++..+.+++.+++.+++ ++ .+++.|+++|++.+...+...+++.|++|+++|++++++......+|..++|.++
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 157 (406)
T PRK15402 80 VMLAGVAFFILTCLAILLAQ--SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVG 157 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998886 66 8999999999999988899999999999999999999999988899999999999
Q ss_pred hhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchh
Q psy10491 186 GYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGP 265 (520)
Q Consensus 186 ~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (520)
+.+.++ .+||+.|++.+++.++..+..++..||++++.++... .++....+++++++|+
T Consensus 158 ~~l~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 216 (406)
T PRK15402 158 AALIHV---LPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLS------------------LKELGRDYKLVLKNRR 216 (406)
T ss_pred HHHHHc---cCccHHHHHHHHHHHHHHHHHHHhCCCCCcccccccc------------------HHHHHHHHHHHHcCcH
Confidence 999887 8999999998888887666666667776533211100 0011223467889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhh
Q psy10491 266 FLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSI 345 (520)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 345 (520)
++...+..++.......+..+.|.++.+.+|+++.+.+.......++.+++.++.+++.||+++|+.+ .+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~----------~~ 286 (406)
T PRK15402 217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLI----------RM 286 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH----------HH
Confidence 98887777777666667777889998888899999989888888888899999999999999998876 34
Q ss_pred hchhhhhhhhhhhcc----CCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHH
Q psy10491 346 GEYGPGLMFIIPVIL----GFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGL 421 (520)
Q Consensus 346 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~ 421 (520)
+..+..++...+... ....++.....++.+...+...+..........++++|++.++.+....++..+|+.+.+.
T Consensus 287 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~ 366 (406)
T PRK15402 287 GLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKH 366 (406)
T ss_pred HHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444433333221 1222222222222222333333443333444456679999999999999999999999999
Q ss_pred hhc
Q psy10491 422 LLN 424 (520)
Q Consensus 422 l~~ 424 (520)
+++
T Consensus 367 l~~ 369 (406)
T PRK15402 367 AYL 369 (406)
T ss_pred ccc
Confidence 988
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=286.82 Aligned_cols=382 Identities=11% Similarity=0.037 Sum_probs=288.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM 107 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~ 107 (520)
+..++.+.+..++.++.+.....++++.+.+.+ +++|+|.+|.+++.+++.++++++.++.|++.||+|.|++
T Consensus 30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~-------~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v 102 (462)
T PRK15034 30 HIARRNLWISVSCLLLAFCVWMLFSAVTVNLNK-------IGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRW 102 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence 344677888889999999999999999999873 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhh---hHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhh
Q psy10491 108 LAYGMVVNAVFALLVPVSSQ---SIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYP 183 (520)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~---~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~ 183 (520)
+.++.+++++.+++.+++.+ +++ .+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..++++
T Consensus 103 ~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~ 181 (462)
T PRK15034 103 TVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQL 181 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999998611 277 999999999998 7789999999999999999999999998777777776666
Q ss_pred hhhhhh-----cc----------ccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCcccc
Q psy10491 184 VSGYLA-----YG----------TFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIE 248 (520)
Q Consensus 184 l~~~l~-----~~----------~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (520)
+...+. .. ++..+||.++++.+++.++..++.++++++.++.+ .
T Consensus 182 l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~--~------------------- 240 (462)
T PRK15034 182 VAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSR--A------------------- 240 (462)
T ss_pred HHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc--c-------------------
Confidence 655433 11 01145888888888888876777777655543211 0
Q ss_pred ccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy10491 249 DLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFI 328 (520)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 328 (520)
......+++|+|+.|.+++.+++.+..+.++..++|.|+++.+ +.........+..+...+.++++|+++||+|
T Consensus 241 ----~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG 314 (462)
T PRK15034 241 ----SIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFG 314 (462)
T ss_pred ----CHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 1123466889999999999999999999999999999998865 3333333344456778888999999999999
Q ss_pred hhccccccchhhhhhhhhchhhhhhhh-hhhccCC----ChHHHHHHHHHHHHHhhccccccceeeccCCCC--------
Q psy10491 329 RKKILSTGATRKLMTSIGEYGPGLMFI-IPVILGF----THTPTIVCLILAMACNGGIYAGFKVNHIDISPC-------- 395 (520)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------- 395 (520)
+++.+. ++.+...+... .+...+. +.+.....++....+.+.......-++...+|+
T Consensus 315 ~~~vl~----------~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~ 384 (462)
T PRK15034 315 GVRVTL----------INFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKM 384 (462)
T ss_pred chHHHH----------HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccc
Confidence 998763 33332322221 1112221 123333333333333344444444444444442
Q ss_pred --------------cchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10491 396 --------------FAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGR 459 (520)
Q Consensus 396 --------------~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (520)
+.|.+.|+..+.+.+|+.+-|.+.|...+ ...++...|+.+.+..++|..+.+....++
T Consensus 385 ~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~-----~~g~~~~~~~~~~~~~~~~~~~~w~~y~r~ 457 (462)
T PRK15034 385 KGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLN-----MTGSPVGAMKVFLIFYIVCVLLTWLVYGRR 457 (462)
T ss_pred cccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHH-----HcCCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 57889999999999999999999999988 245789999999999999998888766544
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=302.61 Aligned_cols=407 Identities=18% Similarity=0.167 Sum_probs=280.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHH
Q psy10491 30 RHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLA 109 (520)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~ 109 (520)
.+...+++.++.++..++...++...|.+..+.+.....+-+.+..+.+++.+++.++..++++++|+++||+|||+++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~ 105 (481)
T TIGR00879 26 VALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLL 105 (481)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHH
Confidence 34444445556667778888888888888732221111122244899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhh-HH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhh--
Q psy10491 110 YGMVVNAVFALLVPVSSQS-IW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVS-- 185 (520)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~-~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~-- 185 (520)
++.++..++.+++.+.... ++ .+++.|+++|++.+...+...++++|++|+++|++++++.+.+..+|..+++.++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 185 (481)
T TIGR00879 106 IIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSG 185 (481)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998665321 34 8999999999999999999999999999999999999999999999999999998
Q ss_pred -hhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-ChHHHHHHHhhccCCcccc---------------
Q psy10491 186 -GYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRV-SVEEKEYILYSIFGGDIIE--------------- 248 (520)
Q Consensus 186 -~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------- 248 (520)
....+. .+||+.|++.++..++ .++..+++||+|+..... +.++..+...+.......+
T Consensus 186 ~~~~~~~---~~w~~~f~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (481)
T TIGR00879 186 KVSLNNT---LGWRIPLGLQLIPAGL-LFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRS 261 (481)
T ss_pred hhcCCCC---ccHHHHHHHHHHHHHH-HHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 555555 7999999996665555 555666788876432111 1111111111100000000
Q ss_pred -ccccCccchhhhcc------chhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHH
Q psy10491 249 -DLKASSIPWGDIVK------SGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLN 321 (520)
Q Consensus 249 -~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g 321 (520)
+.+..+..+.+.++ .+.++...+..+...........+.|.++++ .|++..+.+....+..++.+++.++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g 340 (481)
T TIGR00879 262 IEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAI 340 (481)
T ss_pred HHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 00000111222222 2223333333343333444556677777766 599998888999999999999999999
Q ss_pred HHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhh---ccC-C------ChHHHHHHHHHHHHHhhccccccceeecc
Q psy10491 322 YLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPV---ILG-F------THTPTIVCLILAMACNGGIYAGFKVNHID 391 (520)
Q Consensus 322 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (520)
++.||+++|+.+ .++..+..++++.+. ... . .........+...+......+.......+
T Consensus 341 ~l~d~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (481)
T TIGR00879 341 FLVDRFGRRPLL----------LIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSE 410 (481)
T ss_pred HHHHHhcchHHH----------HHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhc
Confidence 999999999876 344444444433333 111 1 11222233333334444455666667678
Q ss_pred CCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 392 ISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 392 ~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
..|++ |++++|+.+...+++++++|.+.+.+.+ ..++...|++.+++++++.++.+++.+
T Consensus 411 ~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~------~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 411 IFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE------SIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCccceehhHHHHHHHHHHHHheecc
Confidence 87775 9999999999999999999999999998 567888888888888887777665443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=299.64 Aligned_cols=418 Identities=16% Similarity=0.124 Sum_probs=282.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM 107 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~ 107 (520)
+.+....++..++.+...+|...+++..|.+.+++.+...++++.+..+.+++.+++.++..++++++|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 44566677777888999999999999888888665554456779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHh----------hhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHH
Q psy10491 108 LAYGMVVNAVFALLVPVSS----------QSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQF 176 (520)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~----------~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~ 176 (520)
++++.+++.++.++++++. .+.+ .++++|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 9999999999988887631 1245 7899999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhcc-----ccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-ChHHHHHHHhhccCCccccc-
Q psy10491 177 GTIISYPVSGYLAYG-----TFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRV-SVEEKEYILYSIFGGDIIED- 249 (520)
Q Consensus 177 G~~~g~~l~~~l~~~-----~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 249 (520)
|.++++.++..+... ....|||++|++.+++.++. ++..+++||+|++.... +.++.+...++.......+.
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~-~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLF-LMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA 246 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHH-HHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHH
Confidence 999998877655421 01269999999988877774 44567789987643211 12221111111111000000
Q ss_pred cccC-------ccchhhhccchhHHH---HHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHH
Q psy10491 250 LKAS-------SIPWGDIVKSGPFLS---ILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSV 319 (520)
Q Consensus 250 ~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~ 319 (520)
.+.. ....+..+....... .....+..........++.|.++++ .|.+...........++..+++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~ 325 (479)
T PRK10077 247 LQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVL 325 (479)
T ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHH
Confidence 0000 000000110000000 0111111222233445667777766 5888877777778888899999999
Q ss_pred HHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhcc--CCC-h-HHHHHHHHHHHHHhhccccccceeeccCCCC
Q psy10491 320 LNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVIL--GFT-H-TPTIVCLILAMACNGGIYAGFKVNHIDISPC 395 (520)
Q Consensus 320 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 395 (520)
.+++.||++||+.+ ..+..+..++.+.+... .+. . .......+.+.+......+....+..|..|+
T Consensus 326 ~g~l~dr~g~r~~~----------i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 395 (479)
T PRK10077 326 AIMTVDKFGRKPLQ----------IIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN 395 (479)
T ss_pred HHHHHHHhcChHHH----------HHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCCh
Confidence 99999999999876 34444444444433221 111 1 2222233333333333446667778888876
Q ss_pred c-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 396 F-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 396 ~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
+ |++++|+.+..++++..+++.+.+.+.+........++...|++.+++.++++++.+++.+
T Consensus 396 ~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 396 AIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 458 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence 5 9999999999999999999888776552000011456677788877777776666554433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=298.31 Aligned_cols=388 Identities=14% Similarity=0.117 Sum_probs=271.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM 107 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~ 107 (520)
+++|+.+..++++++++.++....++..|.+. +++|+++.+.+++.+.+.+++.++.++.|+++||+|||++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 87 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQ--------GEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLA 87 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 45677888899999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhh
Q psy10491 108 LAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG 186 (520)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~ 186 (520)
+.++.++.+++.++.++++ ++ .+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 165 (496)
T PRK03893 88 MVISIVLFSVGTLACGFAP--GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS 165 (496)
T ss_pred HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986 66 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHH-HHHHhhccCCccccccccCcc--------ch
Q psy10491 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEK-EYILYSIFGGDIIEDLKASSI--------PW 257 (520)
Q Consensus 187 ~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~ 257 (520)
.+.+. .+||+.|++..+..++ .++....+||+++..++.+.++. +...+..... +++.... ..
T Consensus 166 ~l~~~---~~w~~~f~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 237 (496)
T PRK03893 166 LVVPV---WGWRALFFIGILPIIF-ALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRG----EHRIINILLTLAAAAAL 237 (496)
T ss_pred HHhcc---CCHHHHHHHHHHHHHH-HHHHHHhCCCchhhhhhccccccchhHHHHHhcc----hhHHHHHHHHHHHHHHH
Confidence 99887 8999999875443332 33334445554332111100000 0000000000 0000000 00
Q ss_pred hhhc-------------------------------cchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHH
Q psy10491 258 GDIV-------------------------------KSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLIS 306 (520)
Q Consensus 258 ~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 306 (520)
...+ +.+......+..+...........++|.|+++.+|++..+++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~ 317 (496)
T PRK03893 238 WFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVL 317 (496)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 0000 000011111111111111123557899999877899999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCCh-HHHHHHHHHHHHHhhcccccc
Q psy10491 307 ATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTH-TPTIVCLILAMACNGGIYAGF 385 (520)
Q Consensus 307 ~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 385 (520)
+...++.+++.++.|++.||+++|+.+ ..+..+..+..+......... +......+...+......+..
T Consensus 318 ~~~~~~~~~g~~~~g~l~dr~g~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (496)
T PRK03893 318 FFSGFGAAVGCCVGGFLGDWLGTRKAY----------VCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLL 387 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHH----------HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhh
Confidence 999999999999999999999998875 333333333332222222222 222222222222222333444
Q ss_pred ceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHH
Q psy10491 386 KVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCA 449 (520)
Q Consensus 386 ~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (520)
..+..+..|++ ||+++|+.+....+|+.++|.+.|.+.| ..++...+...+++..+..
T Consensus 388 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~------~~g~~~~~~~~~~~~~~~~ 446 (496)
T PRK03893 388 PKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ------RLDLGTALASLSFSLTFVV 446 (496)
T ss_pred HHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc------cCChHHHHHHHHHHHHHHH
Confidence 55566666655 9999999999999999999999999999 5677777765554444433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=293.92 Aligned_cols=401 Identities=17% Similarity=0.196 Sum_probs=286.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHH
Q psy10491 30 RHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLA 109 (520)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~ 109 (520)
++..+..+.+.+...+.++..+....|.+. + +|+++++.+++.+++.++..+++++.|+++||+|||+.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--------~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~ 95 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLV--------E-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLP 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHH--------H-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehH
Confidence 466667777788888888888888888776 4 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhh--hHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhh
Q psy10491 110 YGMVVNAVFALLVPVSSQ--SIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG 186 (520)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~--~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~ 186 (520)
.+.++.+++.++.++.+. +++ .+.+.|++.|++.+..++.....+.|++|+++|++++++.+.+.++|..+++++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~ 175 (438)
T TIGR00712 96 AGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVL 175 (438)
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence 999999999888776521 256 78899999999999999999999999999999999999999999999999988876
Q ss_pred hhhc-cccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccC-CccccccccCcc-chhhhccc
Q psy10491 187 YLAY-GTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFG-GDIIEDLKASSI-PWGDIVKS 263 (520)
Q Consensus 187 ~l~~-~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~ 263 (520)
.+.. + .+||+.|++.++++++..++.++++||+|++.+..+.++.+. +...+ ....+.+.+.+. ..+.++++
T Consensus 176 ~~~~~~---~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (438)
T TIGR00712 176 LGMAWF---NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRN--DYPDDYNEKAEQELTAKEIFMQYVLPN 250 (438)
T ss_pred HHHHHh---hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhccc--ccccccccccccccchHHHHHHHHccC
Confidence 5444 3 689999999999888877777778888765422111110000 00000 000000000011 11246788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhh
Q psy10491 264 GPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMT 343 (520)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 343 (520)
+.+|...+..++.....+++..++|.|+++..|+++.+++++..+..+..++++++.|++.||+++++.... .
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~-------~ 323 (438)
T TIGR00712 251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGAT-------G 323 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHH-------H
Confidence 999988888888777878888999999999889999999999999999999999999999999975543210 0
Q ss_pred hhhchhhhhhhhhhhccC-CChHHH-HHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHH-hHHHHHH
Q psy10491 344 SIGEYGPGLMFIIPVILG-FTHTPT-IVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVG-MLAPTIS 419 (520)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~-~i~~~~~ 419 (520)
........++...+.... .+.+.. ...+.++.+. ............+..|+ +||+++|+.+...++++ +++|.+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~ 402 (438)
T TIGR00712 324 VFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 402 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhH
Confidence 111111111111111111 122222 2222222211 11111112234466665 59999999999988875 6899999
Q ss_pred HHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy10491 420 GLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSG 458 (520)
Q Consensus 420 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (520)
|.+.| ..+|..++++..++.+++.+..+++.++
T Consensus 403 G~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (438)
T TIGR00712 403 GYTVD------FFGWDGGFMVMIGGSILAVILLIVVMIG 435 (438)
T ss_pred HHHHH------hccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999 5579999988888877777766665443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=292.03 Aligned_cols=370 Identities=17% Similarity=0.202 Sum_probs=280.5
Q ss_pred HHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHH
Q psy10491 33 TTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGM 112 (520)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~ 112 (520)
.+..++++.++..++...+.+..|.+. +++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~--------~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~ 82 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMA--------QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAI 82 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 455677788888889888899999998 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcc
Q psy10491 113 VVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYG 191 (520)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~ 191 (520)
++.+++.+++++++ ++ .+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||++++.+.++
T Consensus 83 ~~~~~~~~~~~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~ 160 (471)
T PRK10504 83 VLFTLGSLFCALSG--TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY 160 (471)
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 99999999988885 66 8899999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHH----------HhhccCC-----------------
Q psy10491 192 TFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYI----------LYSIFGG----------------- 244 (520)
Q Consensus 192 ~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~----------~~~~~~~----------------- 244 (520)
.|||+.|++..+...+..++.....|+.+....+.+....... .......
T Consensus 161 ---~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (471)
T PRK10504 161 ---ASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVA 237 (471)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHH
Confidence 8999999998887777666666666655433322221110000 0000000
Q ss_pred ----ccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHH
Q psy10491 245 ----DIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVL 320 (520)
Q Consensus 245 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 320 (520)
..+++...++....+++|+|+++...+..++..........+.|.|++..+|.++.+.++...+..++.+++.++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 317 (471)
T PRK10504 238 LLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIV 317 (471)
T ss_pred HHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111122223458899999988888888888777777889999998789999999999999999999999999
Q ss_pred HHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCC-C-hHHHH-HHHHHHHHHhhccccccceeeccCCC-Cc
Q psy10491 321 NYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGF-T-HTPTI-VCLILAMACNGGIYAGFKVNHIDISP-CF 396 (520)
Q Consensus 321 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p-~~ 396 (520)
+++.||+++|+.+ ..+..+..+....+.+... . .+... ..++.+ ...+...+.......+..| +.
T Consensus 318 ~~l~~r~g~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 386 (471)
T PRK10504 318 VQVVNRFGYRRVL----------VATTLGLALVSLLFMLVALLGWYYLLPFVLFLQG-MVNSTRFSSMNTLTLKDLPDNL 386 (471)
T ss_pred HHHHHHcCchHHH----------HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCHHh
Confidence 9999999999876 3444444444333333321 2 22222 222222 2223333344444444444 55
Q ss_pred chhHHHHHHHHHhhHHhHHHHHHHHhhccc
Q psy10491 397 AGILMSITNCSANVVGMLAPTISGLLLNWF 426 (520)
Q Consensus 397 ~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 426 (520)
+|.++|+.++...+|..+|+.+.|.+.+..
T Consensus 387 ~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~ 416 (471)
T PRK10504 387 ASSGNSLLSMIMQLSMSIGVTIAGLLLGLF 416 (471)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998843
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=292.02 Aligned_cols=365 Identities=19% Similarity=0.182 Sum_probs=273.4
Q ss_pred HHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHH
Q psy10491 39 IGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVF 118 (520)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~ 118 (520)
++++..++++..++...|.+. +++|++..+.|++.+++.+++.++.++.|+++||+|||+++.++.++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~--------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 73 (379)
T TIGR00881 2 IGYAAYYLVRKNFALAMPYLV--------EEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIV 73 (379)
T ss_pred chhhHHHHhHHhhhhhhHHHH--------HHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHH
Confidence 456778889999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhh-hhhhhhhccccccC
Q psy10491 119 ALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISY-PVSGYLAYGTFLQG 196 (520)
Q Consensus 119 ~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~-~l~~~l~~~~~~~g 196 (520)
.+++++++ ++ .+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .+++.+.+. .+
T Consensus 74 ~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~ 148 (379)
T TIGR00881 74 NLFFGFST--SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL---YS 148 (379)
T ss_pred HHHHHHhh--hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc---CC
Confidence 99999996 66 9999999999999999999999999999999999999999999999999999 466666666 79
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHH
Q psy10491 197 WPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQ 276 (520)
Q Consensus 197 wr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (520)
||+.|++.+++.++..++.+++.||++++.+..+.++......+..+...+++.+..+...++++++|.++.+.+..++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (379)
T TIGR00881 149 WHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFV 228 (379)
T ss_pred chhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999888887677777777776654322111110000000000000001112223456778899999988888888
Q ss_pred HHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhh
Q psy10491 277 NFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFII 356 (520)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (520)
......+..+.|.|+++.+|+++.+.+.+.+...++.+++.++.+++.||..+++.... .........++...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~-------~~~~~~~~~~~~~~ 301 (379)
T TIGR00881 229 YVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPL-------AVFFMALIIVSLLV 301 (379)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHH-------HHHHHHHHHHHHHH
Confidence 88888899999999998889999999999999999999999999999998754433210 01111112222222
Q ss_pred hhccCC-ChHHH-HHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 357 PVILGF-THTPT-IVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 357 ~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
...... +.... ...+..+. ......+.......+..|++ ||++.|+.+...++|+.++|.+.|.+.|
T Consensus 302 ~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 371 (379)
T TIGR00881 302 YWLNPAANPLMDLICLFALGF-LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD 371 (379)
T ss_pred HhcCcchhHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 222111 22222 22222222 22223333344555666655 9999999999999999999999999999
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=281.23 Aligned_cols=346 Identities=17% Similarity=0.163 Sum_probs=270.2
Q ss_pred HHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHH
Q psy10491 37 LFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNA 116 (520)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~ 116 (520)
+....+........+.+..|.+. +++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~p~~~--------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 10 LGCLSILGPLGIDMYLPAFPEIA--------ADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFA 81 (385)
T ss_pred HHHHHHHHHHHHHHhcccHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence 33334555667777888889888 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcccccc
Q psy10491 117 VFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQ 195 (520)
Q Consensus 117 ~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~ 195 (520)
++.+++++++ ++ .+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+. .
T Consensus 82 ~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~ 156 (385)
T TIGR00710 82 LSSLGLALSN--NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW---L 156 (385)
T ss_pred HHHHHHHHHc--cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---c
Confidence 9999998886 66 9999999999999999999999999999999999999999999999999999999999887 8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHH
Q psy10491 196 GWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMG 275 (520)
Q Consensus 196 gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (520)
+||+.|++.+++.++..++.++..||++++.++.+.+ .....+++++++|+++...+....
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 217 (385)
T TIGR00710 157 SWHAIFAFLSLAGILLSALIFFILPETLPYEARIQIS-------------------TYFETFLLLLKSKMFWGYALIYGA 217 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCCHH-------------------HHHHHHHHHHcCchhHHHHHHHHH
Confidence 9999999988888876666666777765433221111 111234667888888888777777
Q ss_pred HHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhh
Q psy10491 276 QNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFI 355 (520)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (520)
..........+.|.++++.+|.++.+.+.+.....++.+++.++.+++.||+++|+.+ ..+..+..++..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~----------~~~~~~~~~~~~ 287 (385)
T TIGR00710 218 SFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLL----------RMGLILFAVSAV 287 (385)
T ss_pred HHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH----------HHHHHHHHHHHH
Confidence 7777778888899999888899999999999999999999999999999999998876 233333333332
Q ss_pred hhhcc---C-CChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 356 IPVIL---G-FTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 356 ~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
.+... . ...........+.+...+...+.......+..|++++++.++.+.....++.+.+.+.+.+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 288 LLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22221 1 111222222233333334455555556667778889999999999988777777777774444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=282.09 Aligned_cols=369 Identities=12% Similarity=0.113 Sum_probs=265.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHH
Q psy10491 32 WTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYG 111 (520)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~ 111 (520)
+.+..+++..++..+......+.+|.... +++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~-------~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~ 87 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVH-------DQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFG 87 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHH
Confidence 34455667777777887878888886432 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHh--h----hHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhh
Q psy10491 112 MVVNAVFALLVPVSS--Q----SIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPV 184 (520)
Q Consensus 112 ~~~~~~~~~~~~~~~--~----~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l 184 (520)
.++.+++.+.+.++. + .++ .+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l 167 (399)
T PRK05122 88 LCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPL 167 (399)
T ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHH
Confidence 999888777665542 1 145 789999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccch
Q psy10491 185 SGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSG 264 (520)
Q Consensus 185 ~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (520)
++.+.+. .|||+.+++.+++.++.. + +.++.|+...+.+ + +.++++.++
T Consensus 168 ~~~l~~~---~g~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~------------------~----~~~~~~~~~-- 216 (399)
T PRK05122 168 GVLLYHW---GGLAGLGLLIMLLALLGL-L---LARPRPAVPPVKG------------------E----RLPFRRVLG-- 216 (399)
T ss_pred HHHHHHc---ccHHHHHHHHHHHHHHHH-H---HHhcCCCCCCCCc------------------c----chhHHHHHH--
Confidence 9999887 899999887666544322 2 2222221111000 0 001222222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhh
Q psy10491 265 PFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTS 344 (520)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 344 (520)
+.+.......+..+.+.....+++.|+.+. |++ ..+...+...++.+++.++.+++.||+++|+.+ .
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~----------~ 283 (399)
T PRK05122 217 RVWPYGMGLALASIGFGTIATFITLYYAAR-GWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVA----------I 283 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHH----------H
Confidence 222222333344455556667888888764 663 456667788888999999999999999988765 3
Q ss_pred hhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCC-CcchhHHHHHHHHHhhHHhHHHHHHHHhh
Q psy10491 345 IGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISP-CFAGILMSITNCSANVVGMLAPTISGLLL 423 (520)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 423 (520)
.+..+..++.......++........++.+.+. +...+.......+..| ++||+++|+.+...++|..++|.+.|.+.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 362 (399)
T PRK05122 284 VSLLVEILGLLLLWLAPSPWMALIGAALTGFGF-SLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVA 362 (399)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555544444433223323333333333 3344443333444444 55999999999999999999999999999
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy10491 424 NWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSG 458 (520)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (520)
+ ..+|+..+++.+++.+++.++.+.++++
T Consensus 363 ~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 363 S------WFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred H------HcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8 5689999999988888887777666543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=294.43 Aligned_cols=368 Identities=17% Similarity=0.177 Sum_probs=288.7
Q ss_pred HHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHH
Q psy10491 33 TTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGM 112 (520)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~ 112 (520)
.+..++++.++..++....++.+|.+. +++|.+..+.+|+.+.+.++..++.++.|+++||+|||++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~--------~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 74 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIA--------GDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLIST 74 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHH
Confidence 456777888999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcc
Q psy10491 113 VVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYG 191 (520)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~ 191 (520)
++.+++.+++++++ ++ .+++.|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.+++++.++
T Consensus 75 ~~~~~~~~~~~~~~--~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 152 (485)
T TIGR00711 75 FAFTLGSLLCGVAP--NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN 152 (485)
T ss_pred HHHHHHHHHHhCcC--CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC
Confidence 99999999999996 77 9999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHH------------HHhhccCCc--------------
Q psy10491 192 TFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEY------------ILYSIFGGD-------------- 245 (520)
Q Consensus 192 ~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~------------~~~~~~~~~-------------- 245 (520)
.+||+.|++.++++++..++.++.+||+++..++..+ .... ...+..+..
T Consensus 153 ---~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (485)
T TIGR00711 153 ---YHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFD-FLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITG 228 (485)
T ss_pred ---cCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCc-HHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHH
Confidence 8999999999988887777777777775443222111 1000 000000000
Q ss_pred --------cccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHH
Q psy10491 246 --------IIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITS 317 (520)
Q Consensus 246 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~ 317 (520)
.++.+++++....+++++|+++...+..++..+..+....++|.|+++.+|+++.++++...+..++.+++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~ 308 (485)
T TIGR00711 229 LVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSS 308 (485)
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 001112222333567889999988888888888888888999999999899999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhc--cCC-ChHHHH-HHHHHHHHHhhccccccceeeccCC
Q psy10491 318 SVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVI--LGF-THTPTI-VCLILAMACNGGIYAGFKVNHIDIS 393 (520)
Q Consensus 318 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (520)
++.|++.||+++|+.+ .++..+..++...+.+ .++ ..+... ...+.+.+......+........++
T Consensus 309 ~~~g~l~~r~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~ 378 (485)
T TIGR00711 309 PIAGRMGDKIDPRKLV----------TIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLP 378 (485)
T ss_pred HHHHHHHhhcCcHHHH----------HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999998876 4555555555554442 222 222222 2333333332222233333344455
Q ss_pred CCcchhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 394 PCFAGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 394 p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
++++|++.|+.+..+++|+.+|+.+.|.+.+
T Consensus 379 ~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 379 PHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5669999999999999999999999999987
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=281.27 Aligned_cols=373 Identities=13% Similarity=0.058 Sum_probs=272.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHH
Q psy10491 32 WTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYG 111 (520)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~ 111 (520)
.....+.+..+...+....+.+.+|.+. ++++.+..+.++..+++.+++.++++++|+++||+|||++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~p~l~~i~--------~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~ 87 (413)
T PRK15403 16 FFPMALILYDFAAYLTTDLIQPGIINVV--------RDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITG 87 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHH
Confidence 3334455556667778888899999988 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhc
Q psy10491 112 MVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAY 190 (520)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~ 190 (520)
.++++++++++++++ ++ .++++|+++|++.+...+...+++.|++|+++|++++++......+|..+||++++.+.+
T Consensus 88 ~~~~~~~~~~~~~a~--~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~ 165 (413)
T PRK15403 88 ALIFTLACAATLFTT--SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH 165 (413)
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999986 77 999999999999887777788899999999999999999999999999999999999988
Q ss_pred cccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHH
Q psy10491 191 GTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSIL 270 (520)
Q Consensus 191 ~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (520)
+ .|||+.|++.+++.++..++.++.+||+++++++... .+.....+++++|||+++...
T Consensus 166 ~---~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~------------------~~~~~~~~~~ll~~~~~~~~~ 224 (413)
T PRK15403 166 F---VHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFS------------------AKSVLRDFRNVFRNRLFLTGA 224 (413)
T ss_pred h---cCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCC------------------hHHHHHHHHHHHcCHHHHHHH
Confidence 7 7999999999988887666666677886542211100 001122456788999999988
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhh
Q psy10491 271 VAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGP 350 (520)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 350 (520)
+..++.......+..+.|.++++.+|+++.+.++.......+.+++..+.+++.++..+++..... .....++..+.
T Consensus 225 l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~---~~~~~ig~~l~ 301 (413)
T PRK15403 225 ATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRA---VPIQLVGLALL 301 (413)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHH---HHHHHHHHHHH
Confidence 888888888888888999999998899999999998888888888877777766443333322100 00011222221
Q ss_pred hhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhccccccc
Q psy10491 351 GLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDE 430 (520)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~ 430 (520)
.++.. ...+.....+....+...+.+...+........-.+..+|++.++.+.....+..+++...|++.+
T Consensus 302 ~~~~~---~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~------ 372 (413)
T PRK15403 302 IVGNL---LWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWF------ 372 (413)
T ss_pred HHHHH---HccccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 11111 112222222223222233333344444322222222338999999999999999999999999887
Q ss_pred cchhHHHHHHHHHHHHHH
Q psy10491 431 MLSWKVVFLVSAVLYITC 448 (520)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~ 448 (520)
.+-...|...+++..+.
T Consensus 373 -~~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 373 -NGGRLPFHLLAVVAGVI 389 (413)
T ss_pred -cCCchHHHHHHHHHHHH
Confidence 24455555555444443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=283.52 Aligned_cols=356 Identities=16% Similarity=0.129 Sum_probs=244.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHH-HHHH-----HHHHHHhhhhhhhhhccc
Q psy10491 29 YRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLL-LSSF-----FYGYVLTQIPIGLLTKNH 102 (520)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~-~s~~-----~~~~~~~~~~~g~l~Dr~ 102 (520)
.|++....++++.+++++|+..++...|.+. ++++.++.+.+++ .+.. .++..+++++.|+++||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~ 83 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIA--------KTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV 83 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Confidence 3455678899999999999999999999999 7888888776544 3332 223347889999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHhHhhhHH---------HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHH
Q psy10491 103 DSHKMLAYGMVVNAVFALLVPVSSQSIW---------CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSG 173 (520)
Q Consensus 103 Grr~~l~~~~~~~~~~~~~~~~~~~~~~---------~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~ 173 (520)
|||+.++.+.++++++++++++++ ++ .++++|+++|++.+...+....+++|++|+++|++++++...+
T Consensus 84 Grr~~l~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~ 161 (434)
T PRK15075 84 GRRKGLIVTLSIMASGTLLIAFVP--GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSAS 161 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHH
Confidence 999999999999999999999996 43 3689999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhhhhhcc-----ccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCcccc
Q psy10491 174 AQFGTIISYPVSGYLAYG-----TFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIE 248 (520)
Q Consensus 174 ~~~G~~~g~~l~~~l~~~-----~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (520)
..+|..+++.+++.+... .+..|||++|++..+...+ .+++++.+++.++ . ..+.
T Consensus 162 ~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~-----~~~~~~~~~e~~~--~-~~~~------------ 221 (434)
T PRK15075 162 QQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF-----IFLIRRSLEETEE--F-LARK------------ 221 (434)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH-----HHHHHHhcCCCHH--H-HHhh------------
Confidence 888888888887776321 0127999999875433211 1222322221100 0 0000
Q ss_pred ccccCccchhhhccchhHHHH-HHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy10491 249 DLKASSIPWGDIVKSGPFLSI-LVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYF 327 (520)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 327 (520)
++.+.+..+++..++++.+.. .+..+.....++....|.|.|+++.+|++..+.++...+..++.+++.++.|+++||+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~ 301 (434)
T PRK15075 222 HRPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI 301 (434)
T ss_pred hccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000111223334455555443 3333445556777888999999988899999989888889999999999999999999
Q ss_pred Hhhccccccchhhhhhhhhchhhhh-hhhhhh-c-cCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHH
Q psy10491 328 IRKKILSTGATRKLMTSIGEYGPGL-MFIIPV-I-LGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSI 403 (520)
Q Consensus 328 g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~ 403 (520)
+||+.+. .+..+..+ ...... . ............++...+.+...+.......|..|++ |+++.|+
T Consensus 302 g~r~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~ 371 (434)
T PRK15075 302 GRRPVLI----------AFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSL 371 (434)
T ss_pred cchHHHH----------HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeH
Confidence 9998752 22222111 111111 1 1112111222122222222333344445566777765 9999999
Q ss_pred HHHHHhh-HHhHHHHHHHHhhc
Q psy10491 404 TNCSANV-VGMLAPTISGLLLN 424 (520)
Q Consensus 404 ~~~~~~~-g~~i~~~~~g~l~~ 424 (520)
.+.+... ++.++|.+.|++.|
T Consensus 372 ~~~~~~~~~g~~~p~~~g~i~~ 393 (434)
T PRK15075 372 AYSLATAIFGGFTPAISTWLIH 393 (434)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH
Confidence 7665554 58889999999999
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=277.40 Aligned_cols=366 Identities=13% Similarity=0.110 Sum_probs=274.3
Q ss_pred HHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHH-HHHHHHH
Q psy10491 39 IGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAY-GMVVNAV 117 (520)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~-~~~~~~~ 117 (520)
+.++...+......+.+|...+ +++|.+..+.|++.+++.+...+.+++.|+++||+||||.++. +..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~-------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~ 76 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLS-------EEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAAL 76 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHH-------cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 3455556666666666665432 7899999999999999999999999999999999999987654 5666667
Q ss_pred HHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhH--HHHHHHHhHHHHHHhhhhhhhhhccccc
Q psy10491 118 FALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFL--GGIVYSGAQFGTIISYPVSGYLAYGTFL 194 (520)
Q Consensus 118 ~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~--~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 194 (520)
+.+++++++ ++ .+++.|++.|.+.+...|...++..|+.|+++|++. .+....+.++|.++|+++++.+.+.
T Consensus 77 ~~~~~~~~~--~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~--- 151 (375)
T TIGR00899 77 ACLLFAWNR--NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG--- 151 (375)
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh---
Confidence 778888885 66 888899999988888888889999999887777754 6888888999999999999999887
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHH
Q psy10491 195 QGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHM 274 (520)
Q Consensus 195 ~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (520)
.+||+.|++.+++.++..++.++++||.|++.++.+ ...+.++.+++|+++...+..+
T Consensus 152 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 209 (375)
T TIGR00899 152 FGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL----------------------TRLEVRGLLASRDTRLLFVACT 209 (375)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc----------------------CcchhhhhhcCcchHHHHHHHH
Confidence 899999999998887766777777888664322110 0111234566777776666655
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhh
Q psy10491 275 GQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMF 354 (520)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (520)
+..........++|.++++.+|.++.+.+.+.....+...++.++.|++.||+++|+.+ ..+..+..+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~----------~~~~~~~~~~~ 279 (375)
T TIGR00899 210 LMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLM----------LLAALAGVAFY 279 (375)
T ss_pred HHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHH----------HHHHHHHHHHH
Confidence 55555556667889999888899999999888877777888899999999999999876 23333333333
Q ss_pred hhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchh
Q psy10491 355 IIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSW 434 (520)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~ 434 (520)
......+ +.+.......+.+++.+...+....+..+..|++++++.|+.+...++|..++|.+.|.+.+ ..+|
T Consensus 280 ~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~------~~g~ 352 (375)
T TIGR00899 280 TGLAADN-SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAE------RWSY 352 (375)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH------hccc
Confidence 3332222 22333333333333334444555566778888888899999999999999999999999998 5688
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy10491 435 KVVFLVSAVLYITCATVYLLF 455 (520)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~ 455 (520)
+..|++.+++.+++.++..+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T TIGR00899 353 HAVYWFAIVMLIVALFCLLLI 373 (375)
T ss_pred hhHHHHHHHHHHHHHHHHhee
Confidence 999999888888887776544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=279.53 Aligned_cols=377 Identities=15% Similarity=0.124 Sum_probs=278.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM 107 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~ 107 (520)
+.....+..+++.++...+.+...+...|.+. +++|+++.+.|++.+.+.+++.+++++.|++.||+|||++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~--------~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~ 93 (438)
T PRK10133 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQ--------QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG 93 (438)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 33455556677777888888899999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH---HhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhh
Q psy10491 108 LAYGMVVNAVFALLV---PVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYP 183 (520)
Q Consensus 108 l~~~~~~~~~~~~~~---~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~ 183 (520)
+..+.++++++.+++ ++++ ++ .++++|+++|+|.+...+..+.++.|+.++++|...+++.+....+|..+++.
T Consensus 94 l~~g~~~~~~~~~l~~~~~~a~--~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~ 171 (438)
T PRK10133 94 IITGLFLYALGAALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVV 171 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999886 3454 77 99999999999999999999999999877777777899999999999999999
Q ss_pred hhhhhhccc---------------cc--------cCcchHHHHHHHHHH-HHHHHHHHHhhcCCCCCCCCChHHHHHHHh
Q psy10491 184 VSGYLAYGT---------------FL--------QGWPAIFYVFGVICL-IWCVLFIFLVYENPHSDKRVSVEEKEYILY 239 (520)
Q Consensus 184 l~~~l~~~~---------------~~--------~gwr~~f~i~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 239 (520)
+++.+.... .. .+||++|+....+.. +..++....+||.+++++ ++ +
T Consensus 172 ~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~--~~-~------ 242 (438)
T PRK10133 172 FGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH--SD-A------ 242 (438)
T ss_pred HHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc--cc-c------
Confidence 987654110 00 256666754343333 222222222343221110 00 0
Q ss_pred hccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHH-HhhcCCCcchhHHHHHhHHHHHHHHHH
Q psy10491 240 SIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFL-KEVLHFDMIKNGLISATPYIAMFITSS 318 (520)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~ 318 (520)
+........++++++|.++...+..++......+...|.+.|+ ++.+|+++.++++......++.+++++
T Consensus 243 ---------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~ 313 (438)
T PRK10133 243 ---------KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRF 313 (438)
T ss_pred ---------cccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1111123346788999988777777777777777788888885 566799999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCcch
Q psy10491 319 VLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAG 398 (520)
Q Consensus 319 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g 398 (520)
+.+++.||+++|+.+ ..+..+..+.+....+.++ .. ....+.+.+++.+..+|.......+..|++.+
T Consensus 314 ~~g~l~~r~g~~~~l----------~~~~~~~~~~~~~~~~~~~-~~-~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~ 381 (438)
T PRK10133 314 TGTWLISRFAPHKVL----------AAYALIAMALCLISAFAGG-HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQDTK 381 (438)
T ss_pred HHHHHHHHcCHHHHH----------HHHHHHHHHHHHHHHHcCC-hH-HHHHHHHHHHHHHHHHHHHHHHHHcccchhhc
Confidence 999999999999876 3333333333333333332 22 23334445555677888888888888888788
Q ss_pred hHHHHHHHHHhhHHhHHHHHHHHhhccccccccch-hHHHHHHHHHHHHHHHHH
Q psy10491 399 ILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLS-WKVVFLVSAVLYITCATV 451 (520)
Q Consensus 399 ~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 451 (520)
++.++.. ...+|+.++|.+.|.+.| ..+ .+.+|++..++.+.....
T Consensus 382 ~as~l~~-~~~~g~~~~~~i~G~l~~------~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 382 YGSSFIV-MTIIGGGIVTPVMGFVSD------AAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred cchhHHh-HHhccchHHHHHHHHHHH------hccchHHHHHHHHHHHHHHHHH
Confidence 8888876 455789999999999998 444 677777655554444443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=279.03 Aligned_cols=351 Identities=15% Similarity=0.140 Sum_probs=260.8
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHH---hHhhhHH-HHHHHHHHHhccc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVP---VSSQSIW-CLAAVRFIQGMGE 143 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~-~l~~~r~l~G~g~ 143 (520)
+++|.++.+.|++.+.+.+++.+++++.|+++||+||||++..+.++.+++.+++. +. .+++ .+++.|+++|++.
T Consensus 41 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~i~G~g~ 119 (402)
T TIGR00897 41 KALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLG-HANYPLILLFYGIRGLGY 119 (402)
T ss_pred HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc-CccHHHHHHHHHHHHcch
Confidence 67899999999999999999999999999999999999999999999998877653 22 2256 8889999999998
Q ss_pred cCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHH-HHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcC
Q psy10491 144 GPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGT-IISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYEN 222 (520)
Q Consensus 144 ~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~-~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~ 222 (520)
+...+...+.+.+++|+++|++++|+.+.+.++|. ++++++++.+.+. .||+..+|......++..++..+..++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (402)
T TIGR00897 120 PLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA---FGEMNTLWSALAFVLTGGVIALFSNKDI 196 (402)
T ss_pred HHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 88888888899999999999999999999999997 6899999988876 7877666655444444334444445544
Q ss_pred CCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchh
Q psy10491 223 PHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKN 302 (520)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 302 (520)
+++.++.+ ++ +.++.+..+++++|+|+++...+..++.....+++.++.|.|+++ +|++..+.
T Consensus 197 ~~~~~~~~-~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~ 259 (402)
T TIGR00897 197 FTPQHMQT-RE---------------KFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEW 259 (402)
T ss_pred CCcccccC-Cc---------------chhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHH
Confidence 32111100 00 001112235678899999988888888888888889999999977 69999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhh---c-cCCChHH-HHHHHHHHHHH
Q psy10491 303 GLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPV---I-LGFTHTP-TIVCLILAMAC 377 (520)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~-~~~~~~~~~~~ 377 (520)
+.+.....++..++.++.|+++||+++|+... ..+.....+....+. . ..++.+. ....++.+.+.
T Consensus 260 ~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~---------~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 330 (402)
T TIGR00897 260 LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR---------WFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFL 330 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH---------HHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 99989999999999999999999999887641 111121222111111 1 1222222 23333344333
Q ss_pred hhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 378 NGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 378 ~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
. ...+. .....+..|++||++.|+.+...++++.++|.+.|.+.+ ..++...+++.+++.+++.++..+.+
T Consensus 331 ~-~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~------~~g~~~~~~~~a~~~~i~~~~~~~~~ 401 (402)
T TIGR00897 331 A-GYVPL-AAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIG------FFGAIGVVWIFAALYVVSAFLTAFIR 401 (402)
T ss_pred H-HHHHH-HHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh------hcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 22332 334467788889999999999999999999999999999 56888899999888888777766653
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=289.50 Aligned_cols=369 Identities=15% Similarity=0.164 Sum_probs=270.4
Q ss_pred eeeeeccCCCCCcccCCCCCC---hhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhH
Q psy10491 53 VAIVAMTNPESSIHVDSKSWS---TVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSI 129 (520)
Q Consensus 53 ~~~~~i~~~~~~~~~~~~~~s---~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 129 (520)
...|.+. +|++++ ..+.+++.+++.+++.+++++.|+++||+|||++++++.++.+++.++.++++ +
T Consensus 110 ~~~~~i~--------~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~--~ 179 (505)
T TIGR00898 110 TFSSTIV--------TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP--N 179 (505)
T ss_pred cccccEE--------EEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcc--c
Confidence 4455666 899999 89999999999999999999999999999999999999999999999999996 7
Q ss_pred H-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHH
Q psy10491 130 W-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVIC 208 (520)
Q Consensus 130 ~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~ 208 (520)
+ .+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ .+||+.|++.+++.
T Consensus 180 ~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~~wr~~~~~~~i~~ 253 (505)
T TIGR00898 180 YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI------PDWRWLQLAVSLPT 253 (505)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHH
Confidence 7 9999999999999999999999999999999999999999999999999999888665 35999999999888
Q ss_pred HHHHHHHHHHhhcCCCCCCCC-ChHHHHHHHhhcc---CC-----------ccccccccCccchhhhccchhHHHHHHHH
Q psy10491 209 LIWCVLFIFLVYENPHSDKRV-SVEEKEYILYSIF---GG-----------DIIEDLKASSIPWGDIVKSGPFLSILVAH 273 (520)
Q Consensus 209 ~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (520)
++..+ ..+++||+|++.... +.++..+..++.. .. ...+..+.++..+++++++|+++...+..
T Consensus 254 ~~~~~-~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (505)
T TIGR00898 254 FLFFL-LSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCL 332 (505)
T ss_pred HHHHH-HHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHH
Confidence 77544 447889988754222 2222222111110 00 00000111234678899999887766665
Q ss_pred HHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhh
Q psy10491 274 MGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLM 353 (520)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (520)
....+........++.+..+ .+.+. .......++..+++.++.+++.||+|||+.+ .++..+.+++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~----------~~~~~~~~~~ 398 (505)
T TIGR00898 333 MMLWFTTAFSYYGLVLDLGN-LGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRYTM----------AASLLLAGVA 398 (505)
T ss_pred HHHHHHHHHHHHHHhccccc-cCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH----------HHHHHHHHHH
Confidence 55444433333333333333 35443 2334456777888999999999999999876 4555555555
Q ss_pred hhhhhccCCCh-HHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhcccccccc
Q psy10491 354 FIIPVILGFTH-TPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEM 431 (520)
Q Consensus 354 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~ 431 (520)
++.+.+.++.. +......+++.++.....+..+.+..|..|++ |++++|+.+++..+|++++|.+.+ +.+
T Consensus 399 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~------- 470 (505)
T TIGR00898 399 LLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE------- 470 (505)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-------
Confidence 55555554432 33333444444444555666777888988877 999999999999999999999998 443
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy10491 432 LSWKVVFLVSAVLYITCATVYLLFSSGRK 460 (520)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (520)
.++...+.+.+++.+++.++.+++++++.
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~lpet~~ 499 (505)
T TIGR00898 471 KWLFLPLVLFGGLALLAGILTLFLPETKG 499 (505)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 45667788888888887777777665443
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=279.13 Aligned_cols=386 Identities=19% Similarity=0.196 Sum_probs=282.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhheeee-eccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHH
Q psy10491 31 HWTTFMLFIGMANAYVMRTNMSVAIV-AMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLA 109 (520)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~ 109 (520)
..++..++..++..+.+...++.... .+. +|.+....+.+++.++++++++++.++.|.+.||++..+.+.
T Consensus 44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~--------edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~ 115 (495)
T KOG2533|consen 44 LFILPFLCYLYFHAYLDKSSIVNASLSGLK--------EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLS 115 (495)
T ss_pred HHHHHHHHHHHHHHhcchhcchhHHHcCCc--------cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHH
Confidence 44555566667777777765554322 223 788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhh
Q psy10491 110 YGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYL 188 (520)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l 188 (520)
...+++++..++..... ++ .+++.|++.|+.++..+|....+++.|+.+++|++.++++.+..++|.++|++++..+
T Consensus 116 ~~~~~w~~~~~~~~~~~--s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~ 193 (495)
T KOG2533|consen 116 VSGILWGLFGFLTAAVH--SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGV 193 (495)
T ss_pred HHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHh
Confidence 99999988888887775 77 9999999999999999999999999999999999999999999999999999999886
Q ss_pred hcc---ccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCcccc-ccccCccchhhhccch
Q psy10491 189 AYG---TFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIE-DLKASSIPWGDIVKSG 264 (520)
Q Consensus 189 ~~~---~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 264 (520)
.+. ....||||.|++.+++.++..+++++++|+.|.+..-.+++|+....++.++..... .++.++..+++.+++|
T Consensus 194 ~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp 273 (495)
T KOG2533|consen 194 FKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDP 273 (495)
T ss_pred hhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhch
Confidence 431 112799999999999999999999999999999776666666554444433222221 1225667889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHH----Hhhccccccchhh
Q psy10491 265 PFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYF----IRKKILSTGATRK 340 (520)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----g~~~~~~~~~~~~ 340 (520)
.+|...+..++.....+++.+|+|.|+.+..|+|..++..+..+..++++++.++.|+++||. .+|...
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~------- 346 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLF------- 346 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHH-------
Confidence 999999999999999999999999999996679999999999999999999999999999994 444333
Q ss_pred hhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccC-CCCc-chhHHHHHHHHHhhHHhHHHHH
Q psy10491 341 LMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDI-SPCF-AGILMSITNCSANVVGMLAPTI 418 (520)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~-~g~~~g~~~~~~~~g~~i~~~~ 418 (520)
.....+...++...+.... .........+.+........+.......+. .++. +-+..++.....+.+++++|.+
T Consensus 347 --~~~~~~~~~~g~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~ 423 (495)
T KOG2533|consen 347 --IVFLCLYAIIGAISLLAAA-VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQL 423 (495)
T ss_pred --HHHHHHHHHHHHHHHHhhc-cchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhh
Confidence 1233333333433333332 222222222222222223333333333333 3333 4455555555556666555555
Q ss_pred HHHhhccccccccchhHHHHHHH
Q psy10491 419 SGLLLNWFQHDEMLSWKVVFLVS 441 (520)
Q Consensus 419 ~g~l~~~~~~~~~~~~~~~~~~~ 441 (520)
.-.... ....+...|...
T Consensus 424 ~~~~~a-----p~y~~~~~f~~~ 441 (495)
T KOG2533|consen 424 FRSLDA-----PRYGWGAVFYML 441 (495)
T ss_pred cccccC-----cchhhhhHHHHH
Confidence 432222 234666666333
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=269.41 Aligned_cols=381 Identities=16% Similarity=0.166 Sum_probs=283.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCc
Q psy10491 25 KGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDS 104 (520)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Gr 104 (520)
......++.+.++++...++++|+..+....+.+. +.||++++..|++.+.+.+.+.+++|++|+++|||+|
T Consensus 26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~--------~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR 97 (493)
T KOG1330|consen 26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQ--------TYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNR 97 (493)
T ss_pred cccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHH--------HhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCc
Confidence 34556678888999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhh
Q psy10491 105 HKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPV 184 (520)
Q Consensus 105 r~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l 184 (520)
|+++.+|..++.++.++++++. ..|+++++|.+.|+|.+...|+++.+++|.+|.++|++++++++.+..+|..+|.++
T Consensus 98 ~~v~~vG~~iW~~Av~~~~fs~-~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vv 176 (493)
T KOG1330|consen 98 KRVIAVGIFIWTLAVFASGFSN-HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVV 176 (493)
T ss_pred ceEEeeHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEe
Confidence 9999999999999999999994 334999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccch
Q psy10491 185 SGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSG 264 (520)
Q Consensus 185 ~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (520)
+..+.+.. ..|||.|++.++++++++++.+++++|+++..+...+.+.+. .........+.+.+.|++
T Consensus 177 gs~va~~~--~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~----------~~~~ts~~kDl~~l~~~~ 244 (493)
T KOG1330|consen 177 GSVVASLT--FWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM----------VKPFTSVWKDLKVLAKIK 244 (493)
T ss_pred eeeeccCc--cceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcC----------CCCccchHHHHHHHHccC
Confidence 99998873 349999999999999999999999998876432211111000 001112223344455667
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhh---cCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhh
Q psy10491 265 PFLSILVAHMGQNFGYETLMTMLPTFLKEV---LHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILS-TGATRK 340 (520)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~-~~~~~~ 340 (520)
.+....+......+....+..|.|.++... .|++.....++..+...++.+|.+++|.++||+.++..-. ......
T Consensus 245 v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q 324 (493)
T KOG1330|consen 245 VFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQ 324 (493)
T ss_pred ceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHH
Confidence 666666666666666666666777665543 3666677777788888999999999999999976632210 001111
Q ss_pred hhhhhhchhhhhhhhhhhccCCC-hHHHHHHHHHHHHHhhcccccccee-eccCCCCcchhHHHHHHHHHh-hHHhHHHH
Q psy10491 341 LMTSIGEYGPGLMFIIPVILGFT-HTPTIVCLILAMACNGGIYAGFKVN-HIDISPCFAGILMSITNCSAN-VVGMLAPT 417 (520)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~g~~~g~~~~~~~-~g~~i~~~ 417 (520)
.....+..+....+.+....... .+..+++++++............-+ ..-++|++|.+++++...+.. +|-+-+|+
T Consensus 325 ~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ 404 (493)
T KOG1330|consen 325 LSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPY 404 (493)
T ss_pred HHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcc
Confidence 12223333333333333333332 2445555555555544444444444 444566669999999877665 45566777
Q ss_pred HHHHhhccc
Q psy10491 418 ISGLLLNWF 426 (520)
Q Consensus 418 ~~g~l~~~~ 426 (520)
+.|.+.|..
T Consensus 405 ivGilsd~l 413 (493)
T KOG1330|consen 405 IVGILSDKL 413 (493)
T ss_pred eehhHHHHh
Confidence 999998843
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=270.86 Aligned_cols=364 Identities=14% Similarity=0.106 Sum_probs=255.9
Q ss_pred HHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHH
Q psy10491 34 TFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMV 113 (520)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~ 113 (520)
+..+.++.++.........+.+|.... +++|.|..+.|++.+++.+++.++++++|+++||+||||++..+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~-------~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~ 89 (392)
T PRK12382 17 LFRIAFAVFLTYMTVGLPLPVIPLFVH-------HDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGML 89 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHH-------HhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHH
Confidence 334445556666666666777775332 7899999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHh---Hh---hhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhh
Q psy10491 114 VNAVFALLVPV---SS---QSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG 186 (520)
Q Consensus 114 ~~~~~~~~~~~---~~---~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~ 186 (520)
...++.+.... .+ .+++ .+++.|+++|++.+...+...+++.|++|+++|++++++.+.+...|..+||++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~ 169 (392)
T PRK12382 90 ACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGL 169 (392)
T ss_pred HHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 87766543322 11 1266 89999999999999888989999999999999999999999999999999999999
Q ss_pred hhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhH
Q psy10491 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPF 266 (520)
Q Consensus 187 ~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (520)
.+.+. .|||+.+.+..+..++. +.+.++.|+.+.+.+ ++ .+.++.++ .+
T Consensus 170 ~l~~~---~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------------------~~----~~~~~~~~--~~ 218 (392)
T PRK12382 170 LLHSH---FGFAALALTTMVLPLLA----WAFNGTVRKVPAHAG------------------ER----PSLWSVVG--LI 218 (392)
T ss_pred HHHhc---cChHHHHHHHHHHHHHH----HHHHHhccCCCCCcc------------------cC----chHHHHHH--HH
Confidence 99887 89998877655443331 122222221111000 00 01112111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhh
Q psy10491 267 LSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIG 346 (520)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 346 (520)
+...+..++..........+.|.|+++. |++. .+.......++.++++++.|++.||+++|+.+ ..+
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~----------~~~ 285 (392)
T PRK12382 219 WKPGLGLALQGVGFAVIGTFVSLYFASK-GWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVA----------IVS 285 (392)
T ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHhc-CCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeh----------HHH
Confidence 2222222333445556667888888774 6653 45666677888889999999999999998876 345
Q ss_pred chhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCC-CCcchhHHHHHHHHHhhHHhHHHHHHHHhhcc
Q psy10491 347 EYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDIS-PCFAGILMSITNCSANVVGMLAPTISGLLLNW 425 (520)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 425 (520)
..+..++.......+ +.+.......+.+...+...+.......+.. +++||++.|+.+...++|..++|.+.|.+.|
T Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~- 363 (392)
T PRK12382 286 LLVETVGLLLLWLAP-TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT- 363 (392)
T ss_pred HHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 555555555444443 3333333333333333444444444444444 4569999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHh
Q psy10491 426 FQHDEMLSWKVVFLVSAVLYITCATVYLLF 455 (520)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (520)
..+|+..|.+.+++.+++.++.+..
T Consensus 364 -----~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 364 -----SFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred -----HhCchHHHHHHHHHHHHHHHHHHhh
Confidence 5689999999998888887766654
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=275.16 Aligned_cols=352 Identities=15% Similarity=0.146 Sum_probs=270.6
Q ss_pred HHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHH
Q psy10491 37 LFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNA 116 (520)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~ 116 (520)
++.+.++..+......+.+|.+. .+++.+..+.|++.+++.+++.++++++|+++||+|||+++..+.++.+
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~ 75 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYV--------LAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRA 75 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--------HHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHH
Confidence 34455666666666777778777 6788999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhHhh----hHHHHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccc
Q psy10491 117 VFALLVPVSSQ----SIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGT 192 (520)
Q Consensus 117 ~~~~~~~~~~~----~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~ 192 (520)
++.++..++.. +.+.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++|+++++.+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~- 154 (365)
T TIGR00900 76 VLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT- 154 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 88888877721 3448999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHh-hcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHH
Q psy10491 193 FLQGWPAIFYVFGVICLIWCVLFIFLV-YENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILV 271 (520)
Q Consensus 193 ~~~gwr~~f~i~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (520)
.|||+.|++.++..++..++.++.. ||+++++++ +.+++ ..++....++.++|+|.++...+
T Consensus 155 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 217 (365)
T TIGR00900 155 --LGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQ-ALSNA--------------VLRDTREGIKFVLKNPLLRTLLL 217 (365)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHhcccccCCCcccc-ccchh--------------HHHHHHhHHHHHHcCcHHHHHHH
Confidence 8999999988776665443333322 222211111 10000 00111224566788899888888
Q ss_pred HHHHHHHHHHHHH-HHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhh
Q psy10491 272 AHMGQNFGYETLM-TMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGP 350 (520)
Q Consensus 272 ~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 350 (520)
..++......... .+.|.+.++.+|.++.+.+.+.....++.+++.++.+++.||.++++.. ..+..+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~ 287 (365)
T TIGR00900 218 LALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALM----------TGAIFVI 287 (365)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH----------HHHHHHH
Confidence 8777777776666 7889999887899999999999999999999999999999999998765 3444444
Q ss_pred hhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 351 GLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
++......+.+++.+...+..++.++..+...+....+..+..|++ |+++.|+.+...+++..++|.+.|.+.|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 288 GLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554444444322333333333333444555566666666666655 9999999999999999999999999988
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=271.16 Aligned_cols=332 Identities=16% Similarity=0.236 Sum_probs=253.2
Q ss_pred HhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhh
Q psy10491 48 RTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQ 127 (520)
Q Consensus 48 ~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~ 127 (520)
...+.+.+|.+. +++|+++.+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.+++
T Consensus 7 ~~~~~p~~~~~~--------~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~- 77 (377)
T PRK11102 7 IDMYLPALPVIA--------ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ- 77 (377)
T ss_pred HHHHhccHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc-
Confidence 345567788888 78999999999999999999999999999999999999999999999999999999885
Q ss_pred hHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHH
Q psy10491 128 SIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGV 206 (520)
Q Consensus 128 ~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~ 206 (520)
++ .+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+. .+||+.|++.++
T Consensus 78 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~ 153 (377)
T PRK11102 78 -TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW---FSWHAIFWVLAL 153 (377)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cChHHHHHHHHH
Confidence 66 9999999999999999999999999999999999999999999999999999999999887 799999999888
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHH
Q psy10491 207 ICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTM 286 (520)
Q Consensus 207 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (520)
+.++..++..+.+||++++.++.+.+ .++....+++.+++|+++...+..++.......+..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (377)
T PRK11102 154 AAILAAALVFFFIPETLPKERRQPFH-----------------LRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTA 216 (377)
T ss_pred HHHHHHHHHHHhCCccCcccccCCCC-----------------hHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHc
Confidence 88876667777778765432211100 0011123456788888887777777777777777788
Q ss_pred hHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhh---hhhhhhhhccCCC
Q psy10491 287 LPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGP---GLMFIIPVILGFT 363 (520)
Q Consensus 287 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 363 (520)
.|.++.+.+|+++.+.+.+.....++.+++.++.+++.||+++|+.+. .+..+. .+........+..
T Consensus 217 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 286 (377)
T PRK11102 217 GPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLR----------FGLWIQFIMGIWLVVSALLDLG 286 (377)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH----------HHHHHHHHHHHHHHHHHHHhhh
Confidence 888888888999999999999999999999999999999999998762 333221 2222222222222
Q ss_pred hHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHh-hHHhHHHHHH
Q psy10491 364 HTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSAN-VVGMLAPTIS 419 (520)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~-~g~~i~~~~~ 419 (520)
.+.........................+..|+++|++.++.+.... ++..+++.+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 287 FWALVVGVAAFVGCVSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222223333334445566778889999999877654 5555666554
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=279.59 Aligned_cols=369 Identities=13% Similarity=0.053 Sum_probs=270.2
Q ss_pred HHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHH
Q psy10491 40 GMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFA 119 (520)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~ 119 (520)
..++..+......+.+|.+. ++++.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~ 96 (417)
T PRK10489 25 ARFISIFGLGLLGVAVPVQI--------QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGF 96 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHH
Confidence 34444455556667778777 6778899999999999999999999999999999999999999888887776
Q ss_pred HHHHh---HhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcccccc
Q psy10491 120 LLVPV---SSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQ 195 (520)
Q Consensus 120 ~~~~~---~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~ 195 (520)
+..++ ...+++ .+++.|+++|++.+...++..+++.|++|+++|+++.++.....++|..+|+.+++.+.+. .
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~---~ 173 (417)
T PRK10489 97 IGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA---G 173 (417)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH---H
Confidence 65543 112256 8889999999998888888999999999999999999999999999999999999999887 7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHH
Q psy10491 196 GWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMG 275 (520)
Q Consensus 196 gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (520)
+|++.|++.++..++ ..+..+.+|+++++.++.+. ..++....++.++++|.++...+..++
T Consensus 174 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T PRK10489 174 GVAWNYGLAAAGTFI-TLLPLLRLPALPPPPQPREH-----------------PLRSLLAGFRFLLASPVVGGIALLGGL 235 (417)
T ss_pred hhHHHHHHHHHHHHH-HHHHHHhCCCCCCCCccccc-----------------chHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 999999988777665 34445566765432211100 000111234556778877665555444
Q ss_pred HHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhh
Q psy10491 276 QNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFI 355 (520)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (520)
... ..++..++|.|+++.+|.++...+++.+...++.+++.++.+++.||.++++.+ ..+.++..++++
T Consensus 236 ~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l----------~~~~~~~~~~~~ 304 (417)
T PRK10489 236 LTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLM----------LLSTLGSFLAVG 304 (417)
T ss_pred HHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHH----------HHHHHHHHHHHH
Confidence 332 456778899999997899999999999999999999999999999986655544 344444555554
Q ss_pred hhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchh
Q psy10491 356 IPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSW 434 (520)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~ 434 (520)
.+...+ +.+......++.+...+...+....+..+..|++ ||+++|+.+...++|..++|.+.|++.+ ..++
T Consensus 305 ~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~------~~g~ 377 (417)
T PRK10489 305 LFGLMP-MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA------MMTP 377 (417)
T ss_pred HHHccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH------Hhch
Confidence 444433 2222223333333333334445556667777765 9999999999999999999999999999 5577
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy10491 435 KVVFLVSAVLYITCATVYLLF 455 (520)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~ 455 (520)
...+...+++.++..++....
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 378 VASASASGFGLLIIGVLLLLV 398 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 777776666555544444333
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=272.43 Aligned_cols=372 Identities=16% Similarity=0.187 Sum_probs=272.3
Q ss_pred HHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhh-----hHHHHHHHHHHHHHhhhhhhhhhcccCcchhH
Q psy10491 34 TFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVE-----RGLLLSSFFYGYVLTQIPIGLLTKNHDSHKML 108 (520)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-----~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l 108 (520)
...++++.++.........+.+|.+. +++|++..+ .|++.+++.++..++++++|+++||+|||+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 87 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYV--------EQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIML 87 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH--------HHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHH
Confidence 33455666677777777788888888 678877654 48999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhh
Q psy10491 109 AYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGY 187 (520)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~ 187 (520)
..+.++.+++.+++.+.+ ++ .+++.|++.|++.+ ..+....++.|++|+++|++++++......+|..++|++++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 164 (408)
T PRK09874 88 LRSALGMGIVMVLMGLAQ--NIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGL 164 (408)
T ss_pred HHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888875 66 99999999999865 567788899999999999999999999999999999999999
Q ss_pred hhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHH
Q psy10491 188 LAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFL 267 (520)
Q Consensus 188 l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (520)
+.+. .+||+.|++.+++.++..+..++.+||+++..++.+..+ .....+.+++|+++
T Consensus 165 l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~ 221 (408)
T PRK09874 165 LADS---YGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLH--------------------MREVVTSLKNPKLV 221 (408)
T ss_pred HHHH---hCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhH--------------------HHHHHHhCcCCchH
Confidence 9887 799999999998888766667777777543221111000 00123345666655
Q ss_pred HH-HHHHHHHHHHHHHHHHHhHHHHHhhcCCCcc---hhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhh
Q psy10491 268 SI-LVAHMGQNFGYETLMTMLPTFLKEVLHFDMI---KNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMT 343 (520)
Q Consensus 268 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 343 (520)
.. ....+...........+++.|..+..+.... ..+.+....+++.+++.+..|++.||+++|+.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~---------- 291 (408)
T PRK09874 222 LSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKIL---------- 291 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhH----------
Confidence 43 3333444445555667788888775332221 235556667788888899999999999999876
Q ss_pred hhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCC-CcchhHHHHHHHHHhhHHhHHHHHHHHh
Q psy10491 344 SIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISP-CFAGILMSITNCSANVVGMLAPTISGLL 422 (520)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l 422 (520)
..+..+..+..+...+.. +.+......++.+.+.+...+.......+..| +++|+.+|+.+.+..+|..++|.+.|.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l 370 (408)
T PRK09874 292 ITALIFSVLLLIPMSFVQ-TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAI 370 (408)
T ss_pred HHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444444333 33333333333333334444545444445444 4599999999999999999999999999
Q ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 423 LNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
.+ ..+|+..|++.+++.+++.+..+...
T Consensus 371 ~~------~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 371 SA------NYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred Hh------hcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 98 66899999999988888877766543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=275.14 Aligned_cols=370 Identities=18% Similarity=0.227 Sum_probs=273.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM 107 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~ 107 (520)
++++..+..+++.++...++....++..|.+. +++|.+..+.+++.+++.++..++.++.|+++||+|||+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 84 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAIS--------AEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRV 84 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh--------hccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHH
Confidence 44566667777778888888888888999998 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhh
Q psy10491 108 LAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG 186 (520)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~ 186 (520)
+..+.++.+++.++..+++ ++ .+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 85 LLWSILLFSVFTLLCALAT--NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred HHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH
Confidence 9999999999999988885 66 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhcc----CCc---ccc--ccc-cCccc
Q psy10491 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIF----GGD---IIE--DLK-ASSIP 256 (520)
Q Consensus 187 ~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~----~~~---~~~--~~~-~~~~~ 256 (520)
.+.+. .+||+.|++.+++.++..++.++++||+++...+.++++..+..++.. ... ..+ .+. ..+..
T Consensus 163 ~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (398)
T TIGR00895 163 WLIPV---FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSV 239 (398)
T ss_pred HHhhc---ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHH
Confidence 99887 899999999877777767777778888765432222222111111100 000 000 000 01111
Q ss_pred hhhhccc---hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy10491 257 WGDIVKS---GPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKIL 333 (520)
Q Consensus 257 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 333 (520)
.+.++++ +..+...+..++..........+.|.+.+ .+|+++.+.+.+.....++.+++.++.+++.||+++|+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (398)
T TIGR00895 240 FKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMV-ELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTA 318 (398)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 2222322 33444555555666677777788885554 4699999999999999999999999999999999988432
Q ss_pred cccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHH
Q psy10491 334 STGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVG 412 (520)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~ 412 (520)
....+..+..........+........++.+.+.+...+.......+..|++ |+++.|+.+.+..+|.
T Consensus 319 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 387 (398)
T TIGR00895 319 -----------LLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGA 387 (398)
T ss_pred -----------HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222221223333333333333344555566667777777765 9999999999999999
Q ss_pred hHHHHHHHHh
Q psy10491 413 MLAPTISGLL 422 (520)
Q Consensus 413 ~i~~~~~g~l 422 (520)
.++|.+.|++
T Consensus 388 ~~g~~~~G~l 397 (398)
T TIGR00895 388 IIGPILAGYL 397 (398)
T ss_pred HHHHHhHHhc
Confidence 9999999876
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=276.30 Aligned_cols=347 Identities=24% Similarity=0.370 Sum_probs=265.4
Q ss_pred HHHHHHHHHHHhhhheeee-eccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHH
Q psy10491 38 FIGMANAYVMRTNMSVAIV-AMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNA 116 (520)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~ 116 (520)
+++.++..++...+.+..| .+. +++|.+..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~ 73 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLA--------EELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFA 73 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHH--------CCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH--------HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhh
Confidence 4567777788888888888 777 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhhHHHHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccC
Q psy10491 117 VFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQG 196 (520)
Q Consensus 117 ~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~g 196 (520)
++.++..+++ +.+.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+.+. .+
T Consensus 74 ~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~~ 149 (352)
T PF07690_consen 74 LGSLLLAFAS-NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY---FG 149 (352)
T ss_dssp HHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---CH
T ss_pred hHHHHhhhhh-hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc---cc
Confidence 9977776763 3449999999999999999999999999999999999999999999999999999999999977 79
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCcc-chhhhccchhHHHHHHHHHH
Q psy10491 197 WPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSI-PWGDIVKSGPFLSILVAHMG 275 (520)
Q Consensus 197 wr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 275 (520)
||+.|++.+++.++..++..+++++++++.++.++++++ ++.+.... .++.++++|.+|...+..+.
T Consensus 150 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (352)
T PF07690_consen 150 WRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE------------SKKPKPLKPGFKSLFKNPVLWILLIAFFL 217 (352)
T ss_dssp HCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--------------HHHCCCH-CTHHHHHHCCHHHHHHHHH
T ss_pred cccccccccchhhhhhhhHhhhhhhcccccccccccccc------------cccccccccccccccccchhhhhhhhhhH
Confidence 999999999999886665556666655544332221110 00111122 36777778877766666666
Q ss_pred HHHHHHHHHHHhHHHHHhhcCCC-cchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhh
Q psy10491 276 QNFGYETLMTMLPTFLKEVLHFD-MIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMF 354 (520)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (520)
..+.......++|.|+++.+|++ ..+.+.+.....+...++.++.+++.||+++++.... ......+..+.+
T Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~ 290 (352)
T PF07690_consen 218 FFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLI-------AILLLILGALGL 290 (352)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH-------HHHHHHHHHHHH
Confidence 66777888999999988888999 7899999999999999999999999999987665421 122222222222
Q ss_pred hhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHH
Q psy10491 355 IIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAP 416 (520)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~ 416 (520)
.......+..+.....++.+. +.+...+.......+..|++ +|++.|+.+...++++.++|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 291 LLLPFSSSPVWLIIALFLIGF-GFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp CCSHHHCHHHHHHHHHHHHHH-HHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 222222112233334444444 55666777777777777654 99999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=267.41 Aligned_cols=351 Identities=17% Similarity=0.164 Sum_probs=268.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHH
Q psy10491 31 HWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAY 110 (520)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~ 110 (520)
++.+.+..+..+...+....+.+.+|.+. +++|+++.+.+++.+++.+++.++++++|+++||+|||+++.+
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i~--------~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~ 78 (394)
T PRK11652 7 VNLLFMLVLLVAVGQMAQTIYVPAIADMA--------RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILV 78 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHH
Confidence 33344444455566667777788889888 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhh
Q psy10491 111 GMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLA 189 (520)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~ 189 (520)
+..+..++.+++.+++ ++ .+++.|++.|++.+...+....+..|++++++|+++.++...+..+|..++|++++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 156 (394)
T PRK11652 79 GMSIFILGTLVALFAH--SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT 156 (394)
T ss_pred HHHHHHHHHHHHHHHc--cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988885 67 99999999999998888888899999999999999999999999999999999999998
Q ss_pred ccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHH
Q psy10491 190 YGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSI 269 (520)
Q Consensus 190 ~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (520)
+. .|||+.|++.++..++..++..+++||+++..++.. +.+..+++++++|+++..
T Consensus 157 ~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 212 (394)
T PRK11652 157 TL---FGWRACYLFLLLLGAGVTFSMARWMPETRPADARRT---------------------RVLASYRTLLSNRRFNCY 212 (394)
T ss_pred hc---cChHHHHHHHHHHHHHHHHHHHHhCCccCccccchh---------------------HHHHHHHHHHcChHHHHH
Confidence 87 799999999888777756666667777654321100 012234567788888776
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchh
Q psy10491 270 LVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYG 349 (520)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 349 (520)
.+..+........+..+.+.++++.+|+++.+.+++.....++.+++..+.+++.||.+++... ......+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~---------~~~~~~~ 283 (394)
T PRK11652 213 LLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ---------SVICCLL 283 (394)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
Confidence 6666666666666677888899888899999999988888888888999999999998843322 1122222
Q ss_pred hhhhhhhhhcc-CCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 350 PGLMFIIPVIL-GFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 350 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
..+........ ..+.+.......+..+..+...+.......+..|+++|++.++.+....+|+.+++.+.+.+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 284 AGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 22222222211 1222333333333333445566666666677778889999999999999999999999998876
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=267.74 Aligned_cols=361 Identities=15% Similarity=0.093 Sum_probs=266.8
Q ss_pred HHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHH
Q psy10491 34 TFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMV 113 (520)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~ 113 (520)
+..++++.++.........+.+|.+. +++|.|..++|++.+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~--------~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~ 79 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWL--------AQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASL 79 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44556777778888888899999999 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccc
Q psy10491 114 VNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGT 192 (520)
Q Consensus 114 ~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~ 192 (520)
+.+++.+++++++ ++ .++++|+++|++.+...+...+.+.+..++++|+++++++..+.++|..+|+.+++.+.+.
T Consensus 80 ~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~- 156 (381)
T PRK03633 80 IFAAGCAGLGLMV--GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE- 156 (381)
T ss_pred HHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-
Confidence 9999999999886 66 9999999999999988888888888999999999999999999999999999999998775
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHH
Q psy10491 193 FLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVA 272 (520)
Q Consensus 193 ~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (520)
..|... +..+..... .+.. ++.+.+++..+ + ++..+.++.+++|.++.....
T Consensus 157 --~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~---------------------~--~~~~~~~~~~~~~~~~~~~~~ 208 (381)
T PRK03633 157 --LMSVLP-WVTGLVLAA-ILPL-LFTRILNQQAE---------------------N--HDSTSIWPMLKLRQARLGVNG 208 (381)
T ss_pred --ccchHH-HHHHHHHHH-HHHH-HHhcccCCCCC---------------------C--CCCCCHHHHHHhcchHHHHHH
Confidence 333333 333322222 1111 22222221110 0 011234566788877765554
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhh
Q psy10491 273 HMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGL 352 (520)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 352 (520)
.+...........++|.|+++ .|.++.+.+.+.+...++.+++++..|++.||+++|+.+ ..+..+..+
T Consensus 209 ~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l----------~~~~~~~~~ 277 (381)
T PRK03633 209 CIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVL----------RVQVFVVIL 277 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHH----------HHHHHHHHH
Confidence 555555556667789999987 599999999999999999999999999999999998876 333333333
Q ss_pred hhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHHhHHHHHHHHhhcccccccc
Q psy10491 353 MFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEM 431 (520)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~ 431 (520)
+..... . .........+.+.. .....+.......+..|+ +++.+.+..+...++|..++|.+.|++.| .
T Consensus 278 ~~~~~~--~-~~~~~~~~~l~g~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~------~ 347 (381)
T PRK03633 278 GSIAML--S-QAAMAPALFILGAA-GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ------N 347 (381)
T ss_pred HHHHHh--h-hHHHHHHHHHHHHH-HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
Confidence 333222 1 11122222233322 233445555555565554 57778888888899999999999999999 5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q psy10491 432 LSWKVVFLVSAVLYITCATVYLL 454 (520)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~ 454 (520)
.++...|.+.+.+.++..+..+.
T Consensus 348 ~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 348 YSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred hCccHHHHHHHHHHHHHHHHHHh
Confidence 67888888888777766555443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=268.51 Aligned_cols=340 Identities=16% Similarity=0.172 Sum_probs=259.4
Q ss_pred HHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHH
Q psy10491 41 MANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFAL 120 (520)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~ 120 (520)
....++....+.+..|.+. +++|.++++.+++.+++.+++.++++++|+++||+|||+.+..+.++..++.+
T Consensus 15 ~~~~~~~~~~~~p~~~~i~--------~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 86 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQ--------ADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSL 86 (401)
T ss_pred HHHHHHHHHHHHhhHHHHH--------HHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHH
Confidence 4445556667777788888 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcch
Q psy10491 121 LVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPA 199 (520)
Q Consensus 121 ~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~ 199 (520)
++.+++ ++ .+++.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+.+. .+||+
T Consensus 87 ~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~ 161 (401)
T PRK11043 87 GMLWVE--SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH---FGWQA 161 (401)
T ss_pred HHHHhc--CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHH
Confidence 998886 66 9999999999998888888889999999999999999999999999999999999999887 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHH
Q psy10491 200 IFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFG 279 (520)
Q Consensus 200 ~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (520)
.|++.+++.++..++. +.++|++++.++ ++++.++++++++|+++...+...+....
T Consensus 162 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (401)
T PRK11043 162 IFATLFAITLLLILPT-LRLKPSKKARKQ----------------------SQDALTFKQLLKSKTYLGNVLIFAACSAA 218 (401)
T ss_pred HHHHHHHHHHHHHHHH-HHcCCCCCcccc----------------------chHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 9999888887755444 344544321110 00112456778888887766666666666
Q ss_pred HHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhc
Q psy10491 280 YETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVI 359 (520)
Q Consensus 280 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (520)
...+..+.|.++++ +|+++.+.++......++.+++.++.+++.||+++|+.... ..+...+..+.+.....
T Consensus 219 ~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 290 (401)
T PRK11043 219 FFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPW-------LLVLFAVSVIAIWLASL 290 (401)
T ss_pred HHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 67777889998877 69999999998888888899999999999999998875421 11222222222222222
Q ss_pred -cCCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 360 -LGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 360 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
.....+.......+..+..+...+.......+..|+++|++.|+.+.....++..++.+.|.+.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 291 LSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 12223333333333333444555555555556667889999999999999999999999999987
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=267.46 Aligned_cols=336 Identities=14% Similarity=0.119 Sum_probs=245.9
Q ss_pred HHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHH
Q psy10491 39 IGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVF 118 (520)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~ 118 (520)
+..+........+.+.+|.+. +++|.+..+.+++.+.+.++..+++++.|+++||+|||+.+..+.++.+++
T Consensus 10 ~~~~~~~~~~~~~~~~lp~~~--------~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~ 81 (392)
T PRK10473 10 ALVLLYPAGIDMYLVGLPRIA--------ADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIA 81 (392)
T ss_pred HHHHHHHHHHHHHhhhHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHH
Confidence 333444444455567889888 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCc
Q psy10491 119 ALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGW 197 (520)
Q Consensus 119 ~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gw 197 (520)
.+++.+++ ++ .+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+. .+|
T Consensus 82 ~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~---~g~ 156 (392)
T PRK10473 82 SLLCSLAE--TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK---FPW 156 (392)
T ss_pred HHHHHHhC--cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---cCh
Confidence 99998885 66 8899999999999988999999999999999999999999999999999999999988776 799
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHH
Q psy10491 198 PAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQN 277 (520)
Q Consensus 198 r~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (520)
|+.|++.+++.++..++..+.+||+++++++.+. ......++.+++|+++...+...+..
T Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (392)
T PRK10473 157 QSLFYTMAAMGILVLLLSLFILKETRPARAPAAS--------------------SKPRENSESLLNRFFLSRLVITTLSV 216 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCcc--------------------chHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 9999999988888777777777876543211100 01112345677888776655555555
Q ss_pred HHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhh
Q psy10491 278 FGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIP 357 (520)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (520)
.....+..+.|.++++.+|+++.+.+.+.+..+++.+++.++.+++.||+++|+.+ ..+..+..++...+
T Consensus 217 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~----------~~~~~~~~~~~~~~ 286 (392)
T PRK10473 217 TVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLM----------LTSQVLFLAAGITL 286 (392)
T ss_pred HHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH----------HHHHHHHHHHHHHH
Confidence 55556667788888888899999999999999999999999999999999999876 34444444444444
Q ss_pred hccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc--chhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 358 VILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF--AGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
..............+...+.... .+.. ...+..|.+ .|.+.+ ...++..+++.+.+++.+
T Consensus 287 ~~~~~~~~~~~~~~l~~~g~~~~-~~~~--~~~~~~~~~~~~g~~~~----~~~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 287 ALSPSHAVSLFGITLICAGFSVG-FGVA--MSQALGPFSLRAGVASS----TLGIAQVCGSSLWIWLAA 348 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hHHH--HHHHhccCcccccHHHH----HHHHHHHHHHHHHHHHHH
Confidence 43332222222222222222111 1111 122233332 344444 445566666666666666
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=268.87 Aligned_cols=371 Identities=15% Similarity=0.125 Sum_probs=267.8
Q ss_pred HHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHH
Q psy10491 37 LFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNA 116 (520)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~ 116 (520)
++++.++..+....+....+.+. ++++.+..+.+|+.+.+.+++.++.+++|+++||+|||++++++.++.+
T Consensus 8 l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~ 79 (393)
T PRK11195 8 IMAAQFFSALADNALLFAAIALL--------KELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKL 79 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHH
Confidence 45566666664444455555566 6888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhhHHHHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccC
Q psy10491 117 VFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQG 196 (520)
Q Consensus 117 ~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~g 196 (520)
+++++++++. +. ++.|+++|++.+...|+..+++.|++|+++|++++++.+....+|.++||.+++.+.+. .
T Consensus 80 ~~~~~~~~~~--~~--~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----~ 151 (393)
T PRK11195 80 LGCLLMLFGI--HP--LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----H 151 (393)
T ss_pred HHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 9888877764 43 77899999999999999999999999999999999999999999999999999999885 4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHH
Q psy10491 197 WPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQ 276 (520)
Q Consensus 197 wr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (520)
|+..+.+.+...++ ..+..+.+||++++.++.+.+.... .+ .....++.++++|.+....+...+.
T Consensus 152 ~~~~~~i~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~-~~------------~~~~~~~~l~~~~~~~~~~~~~~~~ 217 (393)
T PRK11195 152 AEAALAVCALIYLL-AALFNLFIPRLGARRPGQSWNPIAL-LR------------DFFHACRVLWRDKLGRFSLAGTTLF 217 (393)
T ss_pred HHHHHHHHHHHHHH-HHHHHhcCCCCcccccccCCCHHHH-HH------------HHHHHHHHHHhCchhHHHHHHHHHH
Confidence 88888776655444 3455567787654332211111100 00 0011235667787776655555555
Q ss_pred HHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhh
Q psy10491 277 NFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFII 356 (520)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (520)
..........+|.|+++.+|.++.+.|.+.+..+++.++++++.+++.||.++++.. ..+.. .++....
T Consensus 218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~----------~~g~~-~~~~~~~ 286 (393)
T PRK11195 218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVL----------PAGIL-MGLVVLL 286 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchH----------HHHHH-HHHHHHH
Confidence 555566667778888888999999999999999999999999999999988877654 23332 2222222
Q ss_pred hhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc--chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchh
Q psy10491 357 PVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF--AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSW 434 (520)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~ 434 (520)
+.+.+ +.+......++.+.+.+...+.......+..|++ +|++.++.+...+++..++..+.+.+.. .+.
T Consensus 287 ~~~~~-~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~ 358 (393)
T PRK11195 287 MALQH-SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK-------LGV 358 (393)
T ss_pred HHHHh-HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH-------cCC
Confidence 33222 2333333333333333444444555556677664 6999999999999999999999986644 466
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy10491 435 KVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
+..+++.+...+++..+.+.++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK11195 359 PVVAVIVGFGLLVALAMALLWR 380 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655555443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=266.39 Aligned_cols=350 Identities=13% Similarity=0.099 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHHHHhhhheeeee-ccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHH
Q psy10491 35 FMLFIGMANAYVMRTNMSVAIVA-MTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMV 113 (520)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~ 113 (520)
...+++++..+.....+.+..|. +. +++|+++.+.+++.+++.+++.+++++.|+++||+|||+.+.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 75 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIK--------DDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLL 75 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHH--------HHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 35677777888888889999995 77 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhh-hHHHHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccc
Q psy10491 114 VNAVFALLVPVSSQ-SIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGT 192 (520)
Q Consensus 114 ~~~~~~~~~~~~~~-~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~ 192 (520)
+..++.++++++ + +.+.+++.|+++|++.+ ..+....+++|++|+++|++++++.....++|..+++.+++.+....
T Consensus 76 ~~~i~~~~~~~~-~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~ 153 (366)
T TIGR00886 76 LLAIPCLWAGLA-VQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSL 153 (366)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999888 5 44488899999999965 45678899999999999999999999888888888887776665420
Q ss_pred -------cccCcchHH-HHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccch
Q psy10491 193 -------FLQGWPAIF-YVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSG 264 (520)
Q Consensus 193 -------~~~gwr~~f-~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (520)
...+||+.| ++.+++.++..++.+...+|.|++.++.++.+.+ ... ...++......++.+++|
T Consensus 154 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~ 225 (366)
T TIGR00886 154 IFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFK----GAR----WSVGTGALGDQLKVFRDR 225 (366)
T ss_pred HhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccc----ccc----ccccchhHHHHHHHHhcc
Confidence 114899999 4446665555555666667765432211100000 000 000011111456788899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhh
Q psy10491 265 PFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTS 344 (520)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 344 (520)
+++...+..++.......+..+.|.|+++.+|+++.+++.+.....+..++++++.|++.||+++|+.. .
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~----------~ 295 (366)
T TIGR00886 226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKL----------L 295 (366)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhH----------H
Confidence 998888888877777788889999999998999999999999999999999999999999999998765 2
Q ss_pred hhchhhhhhhhhhhccCC---ChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHH
Q psy10491 345 IGEYGPGLMFIIPVILGF---THTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVG 412 (520)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~ 412 (520)
.+......+...+..... +...............+...+.......++.|+++|+++|+.+..+++|+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 296 MSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLGG 366 (366)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCCC
Confidence 333333333222222211 23333333333444445555666677778888889999999999888763
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=259.75 Aligned_cols=361 Identities=13% Similarity=0.153 Sum_probs=247.9
Q ss_pred HHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHH-HHHHhhhhhhhhhcccCcchhH-HHHHHHHHHH
Q psy10491 41 MANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFY-GYVLTQIPIGLLTKNHDSHKML-AYGMVVNAVF 118 (520)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~Dr~Grr~~l-~~~~~~~~~~ 118 (520)
.++.......+.+.+|.... +++|++.+++|++.+...+ ++.++.++.++ +||+||||.+ ..+.++.+++
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~-------~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~ 95 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLT-------DEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLA 95 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHH
Confidence 44444444445555555332 7999999999999876655 55555555555 9999999875 4556666677
Q ss_pred HHHHHhHhhhHH-HHHHH-HHHHhccccCchhhHHHHHhhhcCCCcc--hhHHHHHHHHhHHHHHHhhhhhhhhhccccc
Q psy10491 119 ALLVPVSSQSIW-CLAAV-RFIQGMGEGPIVPCTHAILAKWIPPGER--SFLGGIVYSGAQFGTIISYPVSGYLAYGTFL 194 (520)
Q Consensus 119 ~~~~~~~~~~~~-~l~~~-r~l~G~g~~~~~~~~~~~i~~~~~~~~r--g~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 194 (520)
..+.++++ ++ .+++. +++.|.+ +...|...+++.|+.++++| +...++.+.+.++|.++||++++.+.++
T Consensus 96 ~~~~~~~~--~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~--- 169 (393)
T PRK15011 96 CTLFAWNR--NYFVLLFVGVFLSSFG-STANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG--- 169 (393)
T ss_pred HHHHHHhh--HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---
Confidence 77777874 55 55444 5555554 56788888999998876655 3456888999999999999999999987
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccc-hhHHHHHHHH
Q psy10491 195 QGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKS-GPFLSILVAH 273 (520)
Q Consensus 195 ~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 273 (520)
.|||..|++.++..++..++.++.+||.++++++.+. +.+ ...++ +..+......
T Consensus 170 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-------~~~~~~~~~~~~~~~~ 225 (393)
T PRK15011 170 FSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATG-----------------TLE-------APRRNRRDTLLLFVIC 225 (393)
T ss_pred cChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccc-----------------ccc-------ccccccccHHHHHHHH
Confidence 8999999999988888777777778887543221100 000 00112 2223333333
Q ss_pred HHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhh
Q psy10491 274 MGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLM 353 (520)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (520)
+........+..+.|.|+++.+|+++.+.+.+.+...++.+++.++.|+++||+++|+.+ ..+.....+.
T Consensus 226 ~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~----------~~~~~~~~~~ 295 (393)
T PRK15011 226 TLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLM----------RVAAVAGVCF 295 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH----------HHHHHHHHHH
Confidence 444445556667899999888899999999888887788888999999999999999865 2232222222
Q ss_pred hhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccch
Q psy10491 354 FIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLS 433 (520)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~ 433 (520)
+...... ++.+......++.....+...+....+..+..|+++|+++++.+...++|..++|.+.|.+.+ ..+
T Consensus 296 ~~~~~~~-~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~------~~g 368 (393)
T PRK15011 296 YAGMLMA-HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAE------IWN 368 (393)
T ss_pred HHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH------Hhh
Confidence 2222222 233333333332222223333333455567888889999999999999999999999999999 568
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 434 WKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
|+..+++.+++.+++.+..+..+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~ 391 (393)
T PRK15011 369 YHAVFWFALVMIIATLFCLLRIK 391 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999888888888777776553
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=268.15 Aligned_cols=374 Identities=15% Similarity=0.123 Sum_probs=271.0
Q ss_pred HHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhccc-----Ccchh-HHH
Q psy10491 37 LFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNH-----DSHKM-LAY 110 (520)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~-----Grr~~-l~~ 110 (520)
+++.++..+......+..+|... ++.|.+.+++|.+ +.....+ ++.+++|+++||+ ||||. +.+
T Consensus 17 ~~~l~~~~gl~~~~~~~~l~~~l--------~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~ 86 (491)
T PRK11010 17 LLILGFASGLPLALTSGTLQAWM--------TVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLA 86 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHH
Confidence 44444555566667777788887 6789999999997 4444444 6899999999999 99986 667
Q ss_pred HHHHHHHHHHHHHhHhh-hHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhh
Q psy10491 111 GMVVNAVFALLVPVSSQ-SIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYL 188 (520)
Q Consensus 111 ~~~~~~~~~~~~~~~~~-~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l 188 (520)
+.+..+++..+.++.++ +++ .+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++
T Consensus 87 ~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l 166 (491)
T PRK11010 87 TQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWL 166 (491)
T ss_pred HHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77877788777777632 256 8888999999999999999999999999999999999999999999999999999999
Q ss_pred hc-cccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHH
Q psy10491 189 AY-GTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFL 267 (520)
Q Consensus 189 ~~-~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (520)
.+ . .|||..|++.+++.++..+ ..+++||+++..++ +++ .++....++++.+++++.+
T Consensus 167 ~~~~---~GWr~~f~i~a~l~ll~~l-~~~~~~e~~~~~~~-~~~----------------~~~~~~~~l~~~~~~~~~~ 225 (491)
T PRK11010 167 ADRY---LGWQGMYWLMAALLIPCII-ATLLAPEPTDTIPV-PKT----------------LEQAVVAPLRDFFGRNNAW 225 (491)
T ss_pred Hhcc---cCHHHHHHHHHHHHHHHHH-HHHhcCCCcccccc-ccc----------------hhhhHHHHHHHHHcCcCHH
Confidence 88 4 6999999999988777443 44456776432111 000 0000112456677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHH-hHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhh
Q psy10491 268 SILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISA-TPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIG 346 (520)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 346 (520)
...+..++..........+.+.|+.+.+|++..+.+.+.. ...++.+++.++.|++.||+++|+.+ .++
T Consensus 226 ~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l----------~i~ 295 (491)
T PRK11010 226 LILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRAL----------MIF 295 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----------HHH
Confidence 6666666666666667778888887778999999999874 55678999999999999999988765 222
Q ss_pred chhhhh---hhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHh
Q psy10491 347 EYGPGL---MFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLL 422 (520)
Q Consensus 347 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l 422 (520)
..+..+ .+..+....++.+......++..++.+...+.......+..+++ +++..|+.+...++|..+++.+.|.+
T Consensus 296 ~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l 375 (491)
T PRK11010 296 GILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWF 375 (491)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 11222222223222222222222222223333455555666665 89999999999999999999999999
Q ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 423 LNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
.| ..||+..|.+.+++.+.+.++....++
T Consensus 376 ~~------~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 376 VE------AHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HH------HhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99 568999999999999988887776654
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=265.69 Aligned_cols=373 Identities=11% Similarity=0.055 Sum_probs=269.3
Q ss_pred HHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHH
Q psy10491 39 IGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVF 118 (520)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~ 118 (520)
+..++.........+.+|...+ +++|++..+.|++.+++.+++.+++++.|+++||+|||++++++.++.+++
T Consensus 14 ~~~~~~~~g~~~~~~~l~~~l~-------~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~ 86 (395)
T PRK10054 14 ASSLLLTIGRGATLPFMTIYLS-------RQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASG 86 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Confidence 3444444454444544444332 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCc
Q psy10491 119 ALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGW 197 (520)
Q Consensus 119 ~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gw 197 (520)
.++.++++ ++ .++++|++.|.+.+...+...++..|.+|+++|++++++.....++|.++||++++.+.+ .+|
T Consensus 87 ~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~----~g~ 160 (395)
T PRK10054 87 FIAIPLVN--NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM----QSI 160 (395)
T ss_pred HHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcc
Confidence 99888885 56 778889999988777788899999999999999999999999999999999999998875 589
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHH
Q psy10491 198 PAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQN 277 (520)
Q Consensus 198 r~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (520)
|.+|++.+++.++..++..+.+||++++.++.+ + +....++.+|+|+++...+..++..
T Consensus 161 ~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~--~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (395)
T PRK10054 161 NLPFWLAAICSAFPLVFIQIWVQRSEKAIATET--G-------------------SVWSPSVLLQDKALLWFTCSGFLAS 219 (395)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhccccccccch--h-------------------hhhhhhhhccCceehHHHHHHHHHH
Confidence 999999888877755556666665533211000 0 0011256788899888887777777
Q ss_pred HHHHHHHHHhHHHHHhh--cCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhh
Q psy10491 278 FGYETLMTMLPTFLKEV--LHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFI 355 (520)
Q Consensus 278 ~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (520)
+....+..+.+.|+... .+.+....+.+.....+.........|++.||.++|+.+ ..++.+..++..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l----------~~~~~~~~~~~~ 289 (395)
T PRK10054 220 FVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLM----------TAGTLCFVIGLV 289 (395)
T ss_pred HHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHH----------HHHHHHHHHHHH
Confidence 77666666777776543 345555667777777777777778889999999888765 455555555554
Q ss_pred hhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchh
Q psy10491 356 IPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSW 434 (520)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~ 434 (520)
.+....++.+...........+.....+.......+..|++ ++++.+..+ ...+|..+||.+.|.+.| ..++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~------~~g~ 362 (395)
T PRK10054 290 GFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT------TLPP 362 (395)
T ss_pred HHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH------HcCh
Confidence 44433333332333333333333444555555666666655 899988754 677899999999999999 5677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccCC
Q psy10491 435 KVVFLVSAVLYITCATVYLLFSSGRKQYWD 464 (520)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (520)
...|++.+.+..+..++.+ ++.+.+++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 390 (395)
T PRK10054 363 WSLFVILALAIVAAWLLML--KGMRARPWG 390 (395)
T ss_pred hhHHHHHHHHHHHHHHHHH--hccccCccc
Confidence 7777776666655555444 444444433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=257.22 Aligned_cols=345 Identities=27% Similarity=0.449 Sum_probs=295.1
Q ss_pred HHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHH
Q psy10491 36 MLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVN 115 (520)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~ 115 (520)
.+.+..+...++.....+..|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+.+.++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~ 74 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLA--------EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLF 74 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHH--------HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHH
Confidence 345566777788888888888888 788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccc
Q psy10491 116 AVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFL 194 (520)
Q Consensus 116 ~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 194 (520)
.++.++..+.+ ++ .+++.|++.|++.+...+...+++.|++|+|+|++.+++......+|..+++.+++.+.+.
T Consensus 75 ~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--- 149 (352)
T cd06174 75 ALGSLLLAFAS--SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES--- 149 (352)
T ss_pred HHHHHHHHHhc--cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 99999998885 66 9999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHH
Q psy10491 195 QGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHM 274 (520)
Q Consensus 195 ~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (520)
.+||+.|++.+++.++..++..+ ++ |+++...+..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~-~~-------------------------------------------~~~~~~~~~~~ 185 (352)
T cd06174 150 LGWRWLFLILAILGLLLALLLLF-LL-------------------------------------------RLLLLLALAFF 185 (352)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HH-------------------------------------------HHHHHHHHHHH
Confidence 78999999988887775544433 33 46777888888
Q ss_pred HHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhc-cccccchhhhhhhhhchhhhhh
Q psy10491 275 GQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKK-ILSTGATRKLMTSIGEYGPGLM 353 (520)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-~~~~~~~~~~~~~~~~~~~~~~ 353 (520)
+..........+.|.+.++.+|.+..+.+.......++..++.++.+++.||+++|+ .+ ..+..+..++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~ 255 (352)
T cd06174 186 LLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLL----------LIGLLLAALG 255 (352)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----------HHHHHHHHHH
Confidence 888888999999999999988999999999999999999999999999999999998 65 4666666666
Q ss_pred hhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccc
Q psy10491 354 FIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEML 432 (520)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~ 432 (520)
........+ .+.......+.....+...+.......+..|+ +|++.+|+.+...+++..++|.+.|.+.+ ..
T Consensus 256 ~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~------~~ 328 (352)
T cd06174 256 LLLLALAPS-LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD------TG 328 (352)
T ss_pred HHHHHHhcc-HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cc
Confidence 666655543 33444444444455566677777777787774 59999999999999999999999999998 66
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy10491 433 SWKVVFLVSAVLYITCATVYLL 454 (520)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~ 454 (520)
+++..+++.+++.+++.+..+.
T Consensus 329 ~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 329 GYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred CcchHHHHHHHHHHHHHHHhee
Confidence 8999999999888888776544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=262.23 Aligned_cols=344 Identities=13% Similarity=0.100 Sum_probs=251.3
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~ 146 (520)
+++|++..+.|++.+.+.+...+.+++.|+++||+|||+++..+.++.+++.+++.+.+ ++ .+++.|+++|++.+..
T Consensus 39 ~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~g~~~~~~ 116 (400)
T PRK11646 39 DQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH--EPWLLWLSCILSGLGGTLF 116 (400)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999998885 56 8899999999999888
Q ss_pred hhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy10491 147 VPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSD 226 (520)
Q Consensus 147 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~ 226 (520)
.+...+++.|++|+++|++++++.....++|..+||++++.+. . .+||+.|++.++..++..++..+.+||.+++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~---~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~ 192 (400)
T PRK11646 117 DPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q---YDFRLVCATGAVLFVLAAAFNAWLLPAYKLST 192 (400)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---hhHHHHHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 8999999999999999999999999999999999999999998 4 79999999988877775555555666532110
Q ss_pred CCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHH
Q psy10491 227 KRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLIS 306 (520)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 306 (520)
. +++.+..+++++++|+++...+..+...........++|.|+++..+ ++.+.+.+.
T Consensus 193 ~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~ 249 (400)
T PRK11646 193 V----------------------RTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMY 249 (400)
T ss_pred c----------------------chhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHH
Confidence 0 00111245677888888766665555444444556788999988644 677888888
Q ss_pred HhHHHHHHHHHHHHHHHHHH-HHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhcccccc
Q psy10491 307 ATPYIAMFITSSVLNYLADY-FIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGF 385 (520)
Q Consensus 307 ~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (520)
+..++....+....+++.|| ++.++.+ ..+..+..++...+...++. +.......+.....+...+..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~----------~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~g~~~~~p~~ 318 (400)
T PRK11646 250 AIEACLSLTLLYPIARWSEKRFRLEHRL----------MAGLLIMSLSMFPIGMVSNL-QQLFTLICLFYIGSIIAEPAR 318 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHH----------HHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHccH
Confidence 87777766655555665554 5444433 34444555555554444332 222222222222333444555
Q ss_pred ceeeccCCC-CcchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy10491 386 KVNHIDISP-CFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYL 453 (520)
Q Consensus 386 ~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (520)
.....+..| +++|+++|+.+...++|..+||.+.|.+.|..+ ........++..+++.+++.+...
T Consensus 319 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 385 (400)
T PRK11646 319 ETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK--ALNQPELPWMMLGIIGLITLLALY 385 (400)
T ss_pred HHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh--hcCCcchHHHHHHHHHHHHHHHHH
Confidence 566666665 459999999999999999999999999998221 111234566665666666555443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.1e-31 Score=260.53 Aligned_cols=361 Identities=22% Similarity=0.223 Sum_probs=255.2
Q ss_pred HHHHHHHhhhheeeeeccCCCCCcccCCC-CCChhhhHHHHHH-----HHHHHHHhhhhhhhhhcccCcchhHHHHHHHH
Q psy10491 42 ANAYVMRTNMSVAIVAMTNPESSIHVDSK-SWSTVERGLLLSS-----FFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVN 115 (520)
Q Consensus 42 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~s~~~~g~~~s~-----~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~ 115 (520)
+.+++|+..++...+.+.+ +.+ +.++.+.+++.+. ..++..+++++.|+++||+|||+++.++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 75 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFH-------TFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMM 75 (394)
T ss_pred chhHHHHHHHHHHHHHHHH-------HhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHH
Confidence 4567888888888887774 222 2455666665543 33344578999999999999999999999999
Q ss_pred HHHHHHHHhHhhhHH---------HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhh
Q psy10491 116 AVFALLVPVSSQSIW---------CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG 186 (520)
Q Consensus 116 ~~~~~~~~~~~~~~~---------~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~ 186 (520)
.++.+++++++ ++ .+++.|+++|++.+...+...+++.|++|+++|++..++...+..+|.++++.++.
T Consensus 76 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~ 153 (394)
T TIGR00883 76 GIGTLLIGLLP--SYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVL 153 (394)
T ss_pred HHHHHHHhhCC--ChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999885 32 48899999999999999999999999999999999999999999999999998877
Q ss_pred hhhcc-----ccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhc
Q psy10491 187 YLAYG-----TFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIV 261 (520)
Q Consensus 187 ~l~~~-----~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (520)
.+... ....+||++|++.+++.++ .......+||+++..++ ++ +++..+.+.++.+
T Consensus 154 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~-------------~~~~~~~~~~~~~ 214 (394)
T TIGR00883 154 LLSYLLGDDALLEWGWRIPFLVSAVLVLI-GLYLRRNLEETPVFEKA-----QE-------------KHKKKRGPIRETL 214 (394)
T ss_pred HHHHhcCHHHhhccchHHHHHHHHHHHHH-HHHHHHhcCCChhHHHH-----Hh-------------ccccccCCHHHHH
Confidence 65431 0126999999887766555 33334445554432110 00 1112233456666
Q ss_pred cchh--HHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchh
Q psy10491 262 KSGP--FLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATR 339 (520)
Q Consensus 262 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 339 (520)
++++ ++......++..........++|.|+++.+|.++.+.+.+.....++..++.++.|++.||+++|+.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~----- 289 (394)
T TIGR00883 215 TKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI----- 289 (394)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH-----
Confidence 6655 777777777777777888899999998878999999999999999999999999999999999998652
Q ss_pred hhhhhhhchhhhhhhh-hhhcc-CCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHH-HHHHhhHHhHH
Q psy10491 340 KLMTSIGEYGPGLMFI-IPVIL-GFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSIT-NCSANVVGMLA 415 (520)
Q Consensus 340 ~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~-~~~~~~g~~i~ 415 (520)
..+......... ..... ..+.+......+...+..+...+.......|..|++ |+++.|+. +....+|..++
T Consensus 290 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~ 365 (394)
T TIGR00883 290 ----IFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFA 365 (394)
T ss_pred ----HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHH
Confidence 122222212211 11111 223333333333333444455566677777777765 99999985 45556788899
Q ss_pred HHHHHHhhccccccccch-hHHHHHHHHHHH
Q psy10491 416 PTISGLLLNWFQHDEMLS-WKVVFLVSAVLY 445 (520)
Q Consensus 416 ~~~~g~l~~~~~~~~~~~-~~~~~~~~~~~~ 445 (520)
|.+.|++.+ ..+ +...++...++.
T Consensus 366 p~~~g~l~~------~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 366 PYIAAALVA------MTGDWYAIGYYLAALA 390 (394)
T ss_pred HHHHHHHHH------HcCcchhHHHHHHHHH
Confidence 999999998 334 555555555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-30 Score=254.49 Aligned_cols=373 Identities=12% Similarity=0.107 Sum_probs=270.2
Q ss_pred HHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHH
Q psy10491 34 TFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMV 113 (520)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~ 113 (520)
+.++++.++...+.....++.+|.+. +++|++..+.|++.+.+.+++.+++++.|++.||+|||+++.++.+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~--------~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~ 76 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQ--------QAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLF 76 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 44566667777777778889999998 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHh-hhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcc
Q psy10491 114 VNAVFALLVPVSS-QSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYG 191 (520)
Q Consensus 114 ~~~~~~~~~~~~~-~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~ 191 (520)
+++++.+++..+. .+++ .+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+|+.+++.+...
T Consensus 77 l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 156 (410)
T TIGR00885 77 LYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS 156 (410)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998875542 1266 9999999999999999999999999999999999999999999999999999999887532
Q ss_pred c-----------------------cccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCcccc
Q psy10491 192 T-----------------------FLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIE 248 (520)
Q Consensus 192 ~-----------------------~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (520)
. +..+||++|++.+++.++..++.. +.+.++.+.. + +
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~--~-~---------------- 216 (410)
T TIGR00885 157 NLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKMPALNHS--D-A---------------- 216 (410)
T ss_pred CCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCcc--c-c----------------
Confidence 1 113699999998887776443332 2222111100 0 0
Q ss_pred ccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhc-CCCcchhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy10491 249 DLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVL-HFDMIKNGLISATPYIAMFITSSVLNYLADYF 327 (520)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 327 (520)
++.......++++|+|+++...+..++......+..++++.|.++.. +.+...++...+....+..+|+++++++.||+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~ 296 (410)
T TIGR00885 217 KQISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL 296 (410)
T ss_pred ccccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 00111123456788999988888888888788788899999987642 33444445566666778899999999999999
Q ss_pred HhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchh-HHHHHHH
Q psy10491 328 IRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGI-LMSITNC 406 (520)
Q Consensus 328 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~-~~g~~~~ 406 (520)
++|+.+ .+...+..+..++....++ ....+...+.+.+ .+..+|.......+..+++..+ +.++...
T Consensus 297 ~~~~~l----------~i~~~~~~~~~ll~~~~~~-~~~~~~l~~~glf-~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~ 364 (410)
T TIGR00885 297 AAHKVL----------MAYAIIGMALCLGSIFAGG-HVGLYCLTLCSAF-MSLMFPTIYGIALKGLGQDTKYGAAGLVMA 364 (410)
T ss_pred CHHHHH----------HHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Confidence 999876 3444444455444444433 2333444444444 4555577777777777766444 4444333
Q ss_pred HHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHH
Q psy10491 407 SANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITC 448 (520)
Q Consensus 407 ~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (520)
.+|+++.|.+.|.+.|..+.....+++.+|++-..+.+..
T Consensus 365 --~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
T TIGR00885 365 --IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI 404 (410)
T ss_pred --HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence 3999999999999999210001124677777655544443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=251.28 Aligned_cols=402 Identities=16% Similarity=0.142 Sum_probs=284.1
Q ss_pred HHHHHHHHHHHhhhheeeeeccCCCCCcccCCCC--CChhh----hHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHH
Q psy10491 38 FIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKS--WSTVE----RGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYG 111 (520)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~s~~~----~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~ 111 (520)
.++.+-.++....++...+.+.+-.+....+.++ .++.+ .+.+.+++.+|.++|+++.|+++||+|||..+.++
T Consensus 17 ~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~ 96 (485)
T KOG0569|consen 17 TLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLS 96 (485)
T ss_pred HHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 3333444444444444444333222223334555 34433 46778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhh-hHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhh-hh
Q psy10491 112 MVVNAVFALLVPVSSQ-SIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG-YL 188 (520)
Q Consensus 112 ~~~~~~~~~~~~~~~~-~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~-~l 188 (520)
.++..++.++..++.. +.+ +++++|++.|+..|........++.|..|++.||......+.+..+|.+++..++. .+
T Consensus 97 ~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~i 176 (485)
T KOG0569|consen 97 NLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSL 176 (485)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHh
Confidence 9998888888777632 266 99999999999999999999999999999999999999999999999999977763 23
Q ss_pred hccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CCChHHHHHHHhhccCCc------------ccc--cccc
Q psy10491 189 AYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDK--RVSVEEKEYILYSIFGGD------------IIE--DLKA 252 (520)
Q Consensus 189 ~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~~~~~~~~~~~------------~~~--~~~~ 252 (520)
... ...|++.+....+++++ .++.+.++||+|++.- +.+.+++++..+...... .++ ..+.
T Consensus 177 lGt--~~~W~~l~~~~~i~~~~-~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~ 253 (485)
T KOG0569|consen 177 LGT--EDLWPYLLAFPLIPALL-QLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKK 253 (485)
T ss_pred cCC--CcchHHHHHHHHHHHHH-HHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccc
Confidence 322 16799999998888877 6677788999999853 344444444433322211 001 1122
Q ss_pred CccchhhhccchhHHH-----HHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy10491 253 SSIPWGDIVKSGPFLS-----ILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYF 327 (520)
Q Consensus 253 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 327 (520)
+..++++++++|.... +.+....+..+......|...++++. |++..++-+.....++..++..+++.++.||.
T Consensus 254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~a-G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~ 332 (485)
T KOG0569|consen 254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTA-GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL 332 (485)
T ss_pred cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5567889998865433 33333444456667778888888885 99999999999999999999999999999999
Q ss_pred Hhhccccccchhhhhhhhhchhhhhhhhhhhc---cCCC--h---HH-HHHHHHHHHHHhhccccccceeeccCCCCc-c
Q psy10491 328 IRKKILSTGATRKLMTSIGEYGPGLMFIIPVI---LGFT--H---TP-TIVCLILAMACNGGIYAGFKVNHIDISPCF-A 397 (520)
Q Consensus 328 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~ 397 (520)
|||+++. .+..++.+..+.+.. ..+. . +. ....+....++..+..|..+.+..|++|+. |
T Consensus 333 gRRpLll----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R 402 (485)
T KOG0569|consen 333 GRRPLLL----------ISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSAR 402 (485)
T ss_pred CCcHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccch
Confidence 9999884 333333333222211 1111 1 11 233344444555667788888899999887 9
Q ss_pred hhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy10491 398 GILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRK 460 (520)
Q Consensus 398 g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (520)
..++++..++..+...+-...+..+.+ ..|- ..|+.+.+.+++..+..++..+++|
T Consensus 403 ~aa~s~~~~~~w~~~fiv~~~fp~l~~------~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 403 SAAQSVATAVNWLSNFIVGFAFPPLQN------VIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------Hhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 999999999999999999999988888 3444 5666666666666665555444333
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-30 Score=250.79 Aligned_cols=361 Identities=13% Similarity=0.028 Sum_probs=269.6
Q ss_pred HHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhH----HHHH
Q psy10491 37 LFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKML----AYGM 112 (520)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l----~~~~ 112 (520)
+.+.++..+.....+.+.+|.+. +++|.|..++|++.+++.+...++++++|+++||+|||+.. .++.
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l--------~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 80 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWL--------KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALAS 80 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44566666666677788888888 78999999999999999999999999999999999985433 2222
Q ss_pred HHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcc
Q psy10491 113 VVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYG 191 (520)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~ 191 (520)
.+..+ ..+..++ ++ .+++.|+++|.+.+...|...++..++ +++|+++.|......++|.+++|++++.+.+.
T Consensus 81 ~l~~~--~~~~~~~--~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~ 154 (382)
T TIGR00902 81 AIFAA--AFSAGAH--NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM 154 (382)
T ss_pred HHHHH--HHHHhhh--hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 2333443 56 888999999999988899988888765 57899999999999999999999999999998
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHH
Q psy10491 192 TFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILV 271 (520)
Q Consensus 192 ~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (520)
.|||..|++.+....+ .++ .+.++|++++.++.+ + ++.......++++|+|+++...+
T Consensus 155 ---~g~~~~f~~~~~~~~~-~~~-~~~~~~~~~~~~~~~--~---------------~~~~~~~~~~~~l~~~~~~~~l~ 212 (382)
T TIGR00902 155 ---FDEQNILAILTAGLAF-MLI-GFLIKPTIPPKDAIP--E---------------DESQGDSAFIALLKNPMNLRFLA 212 (382)
T ss_pred ---cChhHHHHHHHHHHHH-HHH-HHHcCCCCCCCcccc--c---------------cccccchhHHHHHcChHHHHHHH
Confidence 8999999887655332 333 333344321111100 0 01111234578899999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhh
Q psy10491 272 AHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPG 351 (520)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 351 (520)
..++.......+..+.|.|+++ .|.++.+.|.+.....++.+++.++.+++.||++.|+.+ .++.++..
T Consensus 213 ~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l----------~~~~~~~~ 281 (382)
T TIGR00902 213 AVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLL----------LISAIACV 281 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHH----------HHHHHHHH
Confidence 8888888888999999999987 699999999999999999999999999999999999876 57777777
Q ss_pred hhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHH-HHhhHHhHHHHHHHHhhccccccc
Q psy10491 352 LMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNC-SANVVGMLAPTISGLLLNWFQHDE 430 (520)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~-~~~~g~~i~~~~~g~l~~~~~~~~ 430 (520)
+......+.+ +.+..+...++-+...+...+....+..+.++++++++.++++. ...+|..++|.+.|+++|
T Consensus 282 ~~~~~~~~~~-~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~------ 354 (382)
T TIGR00902 282 GRWAIIGAIE-AFPLIFLLQILHCGTFAVCHLAAMRYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP------ 354 (382)
T ss_pred HHHHHHHhHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 7776666544 33333433444444445555556666667644459999999874 567999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q psy10491 431 MLSWKVVFLVSAVLYITCATVY 452 (520)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~ 452 (520)
..++ ..|...+++.+++.++.
T Consensus 355 ~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 355 TLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred hccH-HHHHHHHHHHHHHHHHH
Confidence 4454 56777777776665443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=261.06 Aligned_cols=402 Identities=19% Similarity=0.218 Sum_probs=314.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcc
Q psy10491 26 GLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSH 105 (520)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr 105 (520)
...+.|.+.+..++......-....++...+.+. ++++.+.++++|+.++....+.+..|+.+.+.||+|.|
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~--------~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R 111 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELM--------DYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCR 111 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHH--------HHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCch
Confidence 6677888888888888888777788888888888 89999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhh
Q psy10491 106 KMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPV 184 (520)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l 184 (520)
.+.++|.++.++|.++.+|+ ++.| .++..-++.|+|.|+.+.++..++..|| +|+|+.+.|+...+.++|.++-|++
T Consensus 112 ~v~i~G~~v~~~g~~lssF~-~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l 189 (509)
T KOG2504|consen 112 TVMIAGGLVAALGLLLSSFA-TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPL 189 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHH
Confidence 99999999999999999999 5667 8888999999999999999999999998 8899999999999999999999999
Q ss_pred hhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHH---------------HHhh---------
Q psy10491 185 SGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEY---------------ILYS--------- 240 (520)
Q Consensus 185 ~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~---------------~~~~--------- 240 (520)
...+.+. .|||+.+++.+.+.+-..+......|..++..+. ..++.+. ...+
T Consensus 190 ~~~l~~~---~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (509)
T KOG2504|consen 190 LKYLLSK---YGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN-EEKDLRNSAASVESTPKPVELRISERDSGLKKLSL 265 (509)
T ss_pred HHHHHHH---hCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch-hhhhhccccccccccccccccccccCCCCCCcccc
Confidence 9999998 8999999999999877666666655533332111 0000000 0000
Q ss_pred -----ccCCcccccc-ccCccc---hhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHH
Q psy10491 241 -----IFGGDIIEDL-KASSIP---WGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYI 311 (520)
Q Consensus 241 -----~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 311 (520)
..+...+.+. ..+... ..+++++|.++.+.+...+...++.....++|.|..+ .|++..+++.+.++.++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi 344 (509)
T KOG2504|consen 266 SNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGV 344 (509)
T ss_pred cchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHH
Confidence 0000000000 111111 2588999999999999999999999999999999996 59999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeecc
Q psy10491 312 AMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHID 391 (520)
Q Consensus 312 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (520)
..++++++.|++.|+...++.. +..++++..+++.....+..+. +..+...++.+++.+...........+
T Consensus 345 ~~i~gRi~~G~laD~~~~~~~~--------~~~~~ll~~gl~~~~~p~~~~~-~~l~~~~~~fG~~~g~~~~l~~~i~~~ 415 (509)
T KOG2504|consen 345 SDIIGRIILGLLADKPGIRALV--------LFLLTLLIAGLARLFLPFATTY-VGLIVFSILFGFCVGSFSSLTPVILVD 415 (509)
T ss_pred hhhhhhhhhhhhcCccccchHH--------HHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998843332 1245566666666555555433 333333333334444455555445555
Q ss_pred CC-CCcchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 392 IS-PCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 392 ~~-p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
.. .++...+.|+...+..++..+||++.|++.| ...+|...|++++++.+++..+++..+
T Consensus 416 ~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d-----~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 416 LVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYD-----ITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HcChhhcchHHHHHHHHhHHHHHcCcccceeeee-----ccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 54 4569999999999999999999999999998 345699999999999999998887776
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-30 Score=248.62 Aligned_cols=328 Identities=14% Similarity=0.079 Sum_probs=246.2
Q ss_pred hhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhh
Q psy10491 49 TNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQS 128 (520)
Q Consensus 49 ~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~ 128 (520)
..+++.+|.+. +++|++.++.|++.+++.+++.+++++.|+++||+|||+++.++.++..++.+.+ .++
T Consensus 17 ~~~~~~lp~l~--------~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~-- 85 (355)
T TIGR00896 17 TSVGPLLPQIR--------SALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP-- 85 (355)
T ss_pred ccCcccHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc--
Confidence 45677888888 8999999999999999999999999999999999999999999999888888777 554
Q ss_pred HH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHH
Q psy10491 129 IW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVI 207 (520)
Q Consensus 129 ~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~ 207 (520)
++ .+++.|++.|++.+...+....++.|++| ++|++++++++.+.++|..+++.+++.+.+... .+||+.|.+.+++
T Consensus 86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-~~w~~~f~~~~~~ 163 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-GHWQQALAWWALP 163 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHH
Confidence 55 88899999999999888888889999985 689999999999999999999999988876510 2499999877665
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHh
Q psy10491 208 CLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTML 287 (520)
Q Consensus 208 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (520)
.++. ...++|+.+++.++ +++..+...++++|+|.++...+..++....+.....++
T Consensus 164 ~~~~---~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 220 (355)
T TIGR00896 164 ALLA---LLAWIPQVRRRVAA--------------------NQTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWL 220 (355)
T ss_pred HHHH---HHHHhhhhccccCC--------------------CCCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 22334544322110 000111234667888988887777777777788888999
Q ss_pred HHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHH
Q psy10491 288 PTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPT 367 (520)
Q Consensus 288 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (520)
|.|+++ .|++..+.+.+.+...++.++++++.|++.||+++|+... ..+..+..++...+.+.++....
T Consensus 221 p~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~- 289 (355)
T TIGR00896 221 PAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIV---------AVLAVLQLVGLCGLLFAPMHGLW- 289 (355)
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHH---------HHHHHHHHHHHHHHHHhhhhHHH-
Confidence 999987 5999999999999999999999999999999995544321 34444444444444444333222
Q ss_pred HHHHHHHHHHhhccccccceeec-cCCC-CcchhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 368 IVCLILAMACNGGIYAGFKVNHI-DISP-CFAGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~-~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
....+.+ ++.+...+....... +..+ ++++...++.+...+++..++|.+.|++.|
T Consensus 290 ~~~~l~g-~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~ 347 (355)
T TIGR00896 290 AWALVLG-LGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD 347 (355)
T ss_pred HHHHHHH-HhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333 333444444333333 3333 347899999999999999999999999998
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=254.76 Aligned_cols=375 Identities=12% Similarity=0.053 Sum_probs=244.4
Q ss_pred HHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHH
Q psy10491 40 GMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFA 119 (520)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~ 119 (520)
.+++.......+.+..|.... +++|++..++|++.+++.+++.++++++|+++||+|||++++++..+.+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~-------~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 90 (420)
T PRK09528 18 FFFFFFFIWSSWFSFFPIWLH-------DINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLF 90 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 344444433444444554442 6799999999999999999999999999999999999999988766665544
Q ss_pred HHHH---hHh---hhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccc
Q psy10491 120 LLVP---VSS---QSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGT 192 (520)
Q Consensus 120 ~~~~---~~~---~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~ 192 (520)
.... .++ .+.+ ..++++++.|.+.....+....+..+ . .+++++.++......++|..+++++++.+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-- 166 (420)
T PRK09528 91 GPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-- 166 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh--
Confidence 3221 111 0112 23344555555444444444444332 2 3567888999999999999999999999876
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHH
Q psy10491 193 FLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVA 272 (520)
Q Consensus 193 ~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (520)
.+|+++|++.+++.++..++.++..+|++++.+. ++++++ ++++......++.+|+|+++.+.+.
T Consensus 167 --~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------~~~~~~~~~~~~~l~~~~~~~l~l~ 231 (420)
T PRK09528 167 --INPQINFWLGSGSALILLVLLFFAKPDAPSTAKV-ANALGA------------NASAVSLKDALALLKLPKFWFLVLY 231 (420)
T ss_pred --cCchHhHHHHHHHHHHHHHHHhcccccccchhhh-ccchhc------------ccccccHHHHHHHccCCCeEeehHH
Confidence 5899999998888777555544444443322110 000000 0111112234567788887766665
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhc---CCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchh
Q psy10491 273 HMGQNFGYETLMTMLPTFLKEVL---HFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYG 349 (520)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 349 (520)
.++....+.....+.|.|+.+.+ +.+..+.+.+.+...+...++.++.|++.||+++|+.+ ..+.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~----------~~~~~l 301 (420)
T PRK09528 232 VIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNAL----------LLAGTI 301 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh----------HHHHHH
Confidence 55555555555566777776543 45666778888888999999999999999999999876 455555
Q ss_pred hhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHH-HHHHHhhHHhHHHHHHHHhhcccc
Q psy10491 350 PGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSI-TNCSANVVGMLAPTISGLLLNWFQ 427 (520)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~-~~~~~~~g~~i~~~~~g~l~~~~~ 427 (520)
..+......+..+ .+..+...++.........+....+..+..|++ +++..+. .+....+|.+++|.+.|++.|
T Consensus 302 ~~~~~~l~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~--- 377 (420)
T PRK09528 302 MAVRIIGSGFATG-PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD--- 377 (420)
T ss_pred HHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH---
Confidence 5555555555443 333333233322222233333334445544544 7877665 677888999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 428 HDEMLSWKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
..||+..|...+++.++..++.+...+
T Consensus 378 ---~~G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 378 ---SIGFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred ---hhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 568999999988888777666655443
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=242.64 Aligned_cols=389 Identities=17% Similarity=0.151 Sum_probs=296.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCC------------------------------------------c
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESS------------------------------------------I 65 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------------------------------~ 65 (520)
+.|..++..+.++.+.+.+....+.+.+|....+... .
T Consensus 17 ~~r~lilviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~ 96 (464)
T KOG3764|consen 17 RSRPLILVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPA 96 (464)
T ss_pred cccceEEEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCch
Confidence 3344555566667777766666666666655433331 0
Q ss_pred ccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhcccc
Q psy10491 66 HVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEG 144 (520)
Q Consensus 66 ~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~ 144 (520)
...+.+-+++++|++.+.+.+.+.+.+++.|.+.||+|+|..+++|+.++..+++++++.. ++ +++++|.+||+|.+
T Consensus 97 ~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~--sy~~l~vAR~LQgvgsA 174 (464)
T KOG3764|consen 97 EAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN--SYPMLFVARSLQGVGSA 174 (464)
T ss_pred hccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc--hhHHHHHHHHHhhhhHH
Confidence 0145566788999999999999999999999999999999999999999999999999997 77 99999999999999
Q ss_pred CchhhHHHHHhhhcCCCc-chhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCC
Q psy10491 145 PIVPCTHAILAKWIPPGE-RSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENP 223 (520)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~-rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~ 223 (520)
+...+..++++|.+|+++ |++++|+.-.+.++|.++||+.||.+++. .|.+.+|++.+++.++...+.++.++.+.
T Consensus 175 ~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~---~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 175 FADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF---AGKSAPFLVLAIVLLLDGALQLLVIEPTE 251 (464)
T ss_pred HHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh---cCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence 999999999999998765 79999999999999999999999999998 89999999999999997777776665543
Q ss_pred CCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhH
Q psy10491 224 HSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNG 303 (520)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~ 303 (520)
.+. +...+..++++++++|.++.........+.........++.+..+.+..+..+.|
T Consensus 252 ~~~----------------------~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G 309 (464)
T KOG3764|consen 252 MDP----------------------DSTEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVG 309 (464)
T ss_pred cCc----------------------cccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCccee
Confidence 322 1223345678999999999888888777777777788888988888786666999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHH--HHHHHHHh-hc
Q psy10491 304 LISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVC--LILAMACN-GG 380 (520)
Q Consensus 304 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~ 380 (520)
..+....+...++..+.|.+.||++..+++. ...+++..++......+.++...+++.. ..+++... ..
T Consensus 310 ~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~--------~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~das 381 (464)
T KOG3764|consen 310 LAFLPASLSYAIGTNLFGKLADKYPHLRWLL--------SLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADAS 381 (464)
T ss_pred eeecccccchhccCchHHHHHHhcCchhHHH--------HHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999655442 2344444444444444444332222222 22222221 22
Q ss_pred cccccceeeccCCCC---cchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 381 IYAGFKVNHIDISPC---FAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 381 ~~~~~~~~~~~~~p~---~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
..|....+......+ ..|...++......+|.++||.++|.+++ ..|+.+...+.++..++-.-++..++.
T Consensus 382 l~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~------~iGF~wl~~iig~~n~iyapvl~ll~~ 455 (464)
T KOG3764|consen 382 LIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVE------AIGFEWLMTIIGILNLIYAPVLLLLRI 455 (464)
T ss_pred HhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhee------ehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222 37899999999999999999999999999 789999888888887777666655543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-29 Score=245.65 Aligned_cols=400 Identities=16% Similarity=0.131 Sum_probs=276.6
Q ss_pred HHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHH
Q psy10491 37 LFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNA 116 (520)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~ 116 (520)
+++.....++.....+..++.+. .|+| +.....|+.+++.++.+++.++.|+++|.||||..++.+.++..
T Consensus 49 ~~~~~~~~~~~~~~~a~~l~~I~--------~diG-~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~v 119 (599)
T PF06609_consen 49 FSLAVIAAYFVLVLPASILPYIN--------ADIG-GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGV 119 (599)
T ss_pred HHHHHHHHHHHHhccHHHHHHHH--------HhcC-CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Confidence 33334444455555566778888 6776 45678999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcccccc
Q psy10491 117 VFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQ 195 (520)
Q Consensus 117 ~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~ 195 (520)
+|.++++-++ +. .++++..+.|+|.|... .....++|..|.|.|+...++......+....++.++..+..+ .
T Consensus 120 vG~Iv~atA~--~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~---~ 193 (599)
T PF06609_consen 120 VGSIVCATAQ--NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH---S 193 (599)
T ss_pred hHHHHhhcCC--cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC---C
Confidence 9999999997 88 99999999999976554 5567799999999999988888777666666788888777666 7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhcc---------------------C---C-------
Q psy10491 196 GWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIF---------------------G---G------- 244 (520)
Q Consensus 196 gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~---------------------~---~------- 244 (520)
+|||.|++.++...+..++.+++...+++...+.+...+.+..+++. . .
T Consensus 194 ~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~V 273 (599)
T PF06609_consen 194 GWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHV 273 (599)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccc
Confidence 99999999999877755554444322222111111111111111111 0 0
Q ss_pred --------------cccccc--ccCccchhhhccch-hHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcc---hhHH
Q psy10491 245 --------------DIIEDL--KASSIPWGDIVKSG-PFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMI---KNGL 304 (520)
Q Consensus 245 --------------~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---~~~~ 304 (520)
...|.. .+++.-+.+++|++ .+...++..++..+.++....+.|+.....++-++. ..++
T Consensus 274 Ia~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~ 353 (599)
T PF06609_consen 274 IAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGW 353 (599)
T ss_pred hhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeeh
Confidence 112322 23455677888884 566666777788888888888999988888777653 5678
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhc-cCCChHHHHHHHHHHHHHhhcccc
Q psy10491 305 ISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVI-LGFTHTPTIVCLILAMACNGGIYA 383 (520)
Q Consensus 305 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 383 (520)
...+.+++..++.++.|.+..++++-|... .++..++.+++.++.. .+++....+...++..++.+....
T Consensus 354 ~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~l---------i~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~ 424 (599)
T PF06609_consen 354 ISSPVGFGSCAGAVILGLLFSKIRHIKWQL---------IFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILV 424 (599)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHccchhHHH---------HHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHH
Confidence 888889999999999999999888766542 3444444433333322 222322223333333333333333
Q ss_pred ccceeec-cCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhccc----------------c-------------------
Q psy10491 384 GFKVNHI-DISPCFAGILMSITNCSANVVGMLAPTISGLLLNWF----------------Q------------------- 427 (520)
Q Consensus 384 ~~~~~~~-~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~----------------~------------------- 427 (520)
......+ .+++++.|++.|+..+++.+|+.+|..+...+...- +
T Consensus 425 ~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~ 504 (599)
T PF06609_consen 425 PAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLE 504 (599)
T ss_pred HHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChh
Confidence 3333444 344455999999999999999999999887766411 0
Q ss_pred ---------------------ccccchhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy10491 428 ---------------------HDEMLSWKVVFLVSAVLYITCATVYLLFSSGRK 460 (520)
Q Consensus 428 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (520)
.....+|+.+|+....+..++.+..++++..++
T Consensus 505 a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~ 558 (599)
T PF06609_consen 505 ALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDK 558 (599)
T ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 000157888889888888888888888776543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-29 Score=244.87 Aligned_cols=372 Identities=12% Similarity=0.042 Sum_probs=262.6
Q ss_pred HHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhccc-----Ccch-hHHHH
Q psy10491 38 FIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNH-----DSHK-MLAYG 111 (520)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~-----Grr~-~l~~~ 111 (520)
...++.++.........+|.+. ++.|++.+++|++..+... .+..+++|+++||+ |||| .+.++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l--------~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~ 74 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWM--------TVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLT 74 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH--------HHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHH
Confidence 3456666777777788888888 7889999999999777665 69999999999999 8876 68888
Q ss_pred HHHHHHHHHHHHhHhh-hHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhh
Q psy10491 112 MVVNAVFALLVPVSSQ-SIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLA 189 (520)
Q Consensus 112 ~~~~~~~~~~~~~~~~-~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~ 189 (520)
.++.+++..+.++.++ +++ .+++..++.++..+...++..+++.|++|+++|+++.++...+.++|.++++.++..+.
T Consensus 75 ~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~ 154 (402)
T PRK11902 75 QVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLA 154 (402)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8888888888777632 245 77778888888888899999999999999999999999999999999999999999988
Q ss_pred ccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHH
Q psy10491 190 YGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSI 269 (520)
Q Consensus 190 ~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (520)
+.. .|||..|++.+++.++.. +..+.+||+++..++.+ +. +++....+++++|+|.++..
T Consensus 155 ~~~--~gw~~~f~i~a~~~l~~~-l~~~~~~e~~~~~~~~~-~~----------------~~~~~~~~~~l~~~~~~~~~ 214 (402)
T PRK11902 155 DRV--LGWGNTYLLMAGLMLAGA-LTTLWAPEPEVPARPPR-SL----------------GEAVVGPLRDFFSRRGAWAL 214 (402)
T ss_pred hcc--cCHHHHHHHHHHHHHHHH-HHHHhcCCCcccccccc-hh----------------HHHHHHHHHHHHhCcCHHHH
Confidence 741 499999999888776643 34556677544321110 00 00112345778899998877
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHH-HHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhch
Q psy10491 270 LVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPY-IAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEY 348 (520)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 348 (520)
.+..++..........+.+.++.+.+|+++.+.+++....+ ++.+++.++.+++.||+++|+.+ ..+..
T Consensus 215 l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l----------~~~~~ 284 (402)
T PRK11902 215 LLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSL----------MLFGV 284 (402)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH----------HHHHH
Confidence 77766665554444445556676768999999999876655 45788999999999999988865 22222
Q ss_pred hhhhh---hhhhhccCCChHHHHHHHH----HHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHH
Q psy10491 349 GPGLM---FIIPVILGFTHTPTIVCLI----LAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGL 421 (520)
Q Consensus 349 ~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~ 421 (520)
+..+. +..+...+++.+....... ......+........+..+..| ++..++.+....++..+++.+.|.
T Consensus 285 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~G~ 361 (402)
T PRK11902 285 LQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS---ATQYALLSALASVGRVYVGPTSGY 361 (402)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 2222233333333333222 2222223334444444444444 445666666777888777789999
Q ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy10491 422 LLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSG 458 (520)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (520)
+.| ..||+..|.+.+++.+++.++....+++
T Consensus 362 l~~------~~G~~~~f~~~~~~~~~~~~~~~~~~~~ 392 (402)
T PRK11902 362 LVE------AYGWPGFYLMTVVIALPGLALLWLMRGT 392 (402)
T ss_pred HHH------HhChHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999 6799999999988888877666544433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-29 Score=246.04 Aligned_cols=374 Identities=12% Similarity=0.055 Sum_probs=255.5
Q ss_pred HHHHHHHHHHHhhh-heeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCc-chhHHHHHHHH
Q psy10491 38 FIGMANAYVMRTNM-SVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDS-HKMLAYGMVVN 115 (520)
Q Consensus 38 ~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Gr-r~~l~~~~~~~ 115 (520)
++.++..+.....+ ++..+.+. +++|++..++|++.+++.+++.++++++|+++||+|| |+++.++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~l~--------~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~ 79 (418)
T TIGR00889 8 KFMSFLQWFIWGSWLVTLGSYMS--------KTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAG 79 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34444444444444 44445555 7899999999999999999999999999999999965 77888888888
Q ss_pred HHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhh--------cCCCcchhHHHHHHHHhHHHHHHhhhhhh
Q psy10491 116 AVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKW--------IPPGERSFLGGIVYSGAQFGTIISYPVSG 186 (520)
Q Consensus 116 ~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~--------~~~~~rg~~~~~~~~~~~~G~~~g~~l~~ 186 (520)
+++..+..+.+ ++ .+++.|++.|++.+...+...++..++ .....|.+.+| .+|.++|+.+++
T Consensus 80 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g 151 (418)
T TIGR00889 80 ALLLFFAAQVT--TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVS 151 (418)
T ss_pred HHHHHHHHHhc--CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHH
Confidence 88888887775 66 888899999998877777666554322 22234555544 478888888888
Q ss_pred hhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhH
Q psy10491 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPF 266 (520)
Q Consensus 187 ~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (520)
.+... ..|+ +|++.+++.++..+ ..+.+||.|+..++.+.+ .++..+...++++|+|++
T Consensus 152 ~l~~~---~~~~-~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~----------------~~~~~~~~~~~~~k~~~~ 210 (418)
T TIGR00889 152 LLDIE---LSNI-QLYITAGSSALLGV-FALTLPDIPVAKSTAKMS----------------IKVMLGLDAFILFKNKRM 210 (418)
T ss_pred Hhccc---chhH-HHHHHHHHHHHHHH-HHhcCCCCCCCccccccC----------------HHHHhhhhHHHHhcCCCe
Confidence 77332 3455 45566666665443 456778765322211100 000111234567889988
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCc--------chhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccch
Q psy10491 267 LSILVAHMGQNFGYETLMTMLPTFLKEVLHFDM--------IKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGAT 338 (520)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 338 (520)
+...+..++..........+.+.++++. |.++ ...+...+...+..+++.++.|++.||+|+|+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l----- 284 (418)
T TIGR00889 211 AIFFFFSMLLGAPLQITNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVM----- 284 (418)
T ss_pred eeHHHHHHHHHhHHHHHHHhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-----
Confidence 8877777777666666677888888774 6554 5568888999999999999999999999999887
Q ss_pred hhhhhhhhchhhhhhhhhhhccCCCh---HHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHH-HHHhhHHh
Q psy10491 339 RKLMTSIGEYGPGLMFIIPVILGFTH---TPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITN-CSANVVGM 413 (520)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~-~~~~~g~~ 413 (520)
..+.++..+....+....... +..+...++.+...+...+....+..+..|++ |++++|+.+ ....+|.+
T Consensus 285 -----~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~ 359 (418)
T TIGR00889 285 -----LLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSL 359 (418)
T ss_pred -----HHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHH
Confidence 455555555544444322211 22222233333333444555566667777765 999999997 56789999
Q ss_pred HHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10491 414 LAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGR 459 (520)
Q Consensus 414 i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (520)
+||.+.|.+.|..+.....+|+..|.+.+++.+++.++.+++.++.
T Consensus 360 iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 360 LGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999943222225799999988888877777666665433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=241.59 Aligned_cols=356 Identities=14% Similarity=0.062 Sum_probs=254.7
Q ss_pred HHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcc----hhHHHHHHHHH
Q psy10491 41 MANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSH----KMLAYGMVVNA 116 (520)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr----~~l~~~~~~~~ 116 (520)
++..+.....+.+.+|.+. +++|.|.+++|++.+++.++..++++++|+++||+||| +.+.++..+.
T Consensus 13 ~~~~~~~~g~~~p~l~~~l--------~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~- 83 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWL--------KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF- 83 (382)
T ss_pred HHHHHHHHHHHhhhHHHHH--------HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH-
Confidence 3333344566677777787 78999999999999999999999999999999999994 3333222222
Q ss_pred HHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcccccc
Q psy10491 117 VFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQ 195 (520)
Q Consensus 117 ~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~ 195 (520)
.+..... .+++ .+++.|++.|++.+...+...+++.++ .++|+++.+......++|.++||++++.+.++ .
T Consensus 84 --~~~~~~~-~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~---~ 155 (382)
T PRK11128 84 --AVAFWFG-AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW---F 155 (382)
T ss_pred --HHHHHHh-cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH---c
Confidence 1222222 1245 778899999999898999888888877 46688999999999999999999999999998 8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHH
Q psy10491 196 GWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMG 275 (520)
Q Consensus 196 gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (520)
|||..|++.++..++ .++..+..||.+++.++ ++ +.++...++++++|+|+++...+..++
T Consensus 156 g~~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~--------------~~~~~~~~~~~i~~~~~~~~~~~~~~l 216 (382)
T PRK11128 156 GEQAILWILTAGVAS-MLLGQLLRPTIMPQGES----RQ--------------QESAGWPAWKALLKEPTVWRFLLCVSL 216 (382)
T ss_pred ChhHHHHHHHHHHHH-HHHHHHccCCCCCcccc----cc--------------ccccccchHHHHHcChhHHHHHHHHHH
Confidence 999999987765444 33333344443221110 00 111123457889999999988888777
Q ss_pred HHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhh
Q psy10491 276 QNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFI 355 (520)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (520)
..........+.|.|+++ .|.+..+.|.+.+...++.++..++.+++.||+++++.+ ..+..+..+...
T Consensus 217 ~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l----------~~~~~~~~~~~~ 285 (382)
T PRK11128 217 LQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLL----------LLSAICGVVRWG 285 (382)
T ss_pred HHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH----------HHHHHHHHHHHH
Confidence 777777788888999977 699999999999988899999999999999999999876 455555555555
Q ss_pred hhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHH-HhhHHhHHHHHHHHhhccccccccchh
Q psy10491 356 IPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCS-ANVVGMLAPTISGLLLNWFQHDEMLSW 434 (520)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~-~~~g~~i~~~~~g~l~~~~~~~~~~~~ 434 (520)
.+...+ +.+..+...++.+...+...+....+..+..++++++..++.+.. ..+|..+||.+.|.+.| ..++
T Consensus 286 ~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~------~~g~ 358 (382)
T PRK11128 286 LMGSTT-ALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ------HLGA 358 (382)
T ss_pred HHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hccH
Confidence 555443 333333333333333444455555656666666688889988744 56777999999999999 4454
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10491 435 KVVFLVSAVLYITCATV 451 (520)
Q Consensus 435 ~~~~~~~~~~~~~~~~~ 451 (520)
..++..+++.+++.++
T Consensus 359 -~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 359 -GVFWVMALVALPALFI 374 (382)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 4566666555554433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=220.58 Aligned_cols=359 Identities=13% Similarity=0.140 Sum_probs=290.3
Q ss_pred HHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHh
Q psy10491 47 MRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSS 126 (520)
Q Consensus 47 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~ 126 (520)
..+.++++++.+. +|+|+|.+..|+++++..++..+.+++..+++.|+|.++.+..++++.++|.++-....
T Consensus 27 ~itsvgPLL~~Ir--------~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~ 98 (395)
T COG2807 27 AITSVGPLLDEIR--------QDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGG 98 (395)
T ss_pred hhhhhhhhHHHHH--------HHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 3456777888888 89999999999999999999999999999999999999999999999999999997775
Q ss_pred hhHHHHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHH
Q psy10491 127 QSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGV 206 (520)
Q Consensus 127 ~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~ 206 (520)
.+.++.+-.+.|.|.+......++++-+.| +|+-+..+|+|....++|..+++.+.-.+.++. .|||....+-+.
T Consensus 99 --~~~L~~gt~l~G~gIav~nVLLPslIK~~F-pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl 173 (395)
T COG2807 99 --LPLLFLGTLLAGAGIAVINVLLPSLIKRDF-PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWAL 173 (395)
T ss_pred --HHHHHHHHHHHHhhHHHHHHhhhHHHHhhc-ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHH
Confidence 668999999999999999999999999999 677899999999999999999999999999883 489999999888
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHH
Q psy10491 207 ICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTM 286 (520)
Q Consensus 207 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (520)
++++ .++.| +|...+++.. ..+.+..+-..++|+|..|.+.+...++++.++....|
T Consensus 174 ~all-Al~~W--lPq~~r~~~~--------------------~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~W 230 (395)
T COG2807 174 LALL-ALLIW--LPQALREQAA--------------------SIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGW 230 (395)
T ss_pred HHHH-HHHHH--hhhccccccc--------------------ccccccccccccccCchhHHHHHHHHhhHHHHHHHHHH
Confidence 8887 33333 3432211100 11222223356889999999999999999999999999
Q ss_pred hHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHH
Q psy10491 287 LPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTP 366 (520)
Q Consensus 287 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (520)
+|.++.|. |+|+.++|.+.+...+..+..++....+.+|...++.+. ....+++.++++.+.+.+.....
T Consensus 231 LP~ili~~-G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~---------~~~~~~~l~G~~G~~~~P~~~~~ 300 (395)
T COG2807 231 LPAILIDR-GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLV---------VLALLLMLVGLVGLLLAPGQLPI 300 (395)
T ss_pred HHHHHHHc-CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHH---------HHHHHHHHHHHHHHHHhhhhHHH
Confidence 99999996 999999999999999999999999999999877666552 45556666666666666655433
Q ss_pred HHHHHHHHHHHhhccccccceeecc--CCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHH
Q psy10491 367 TIVCLILAMACNGGIYAGFKVNHID--ISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVL 444 (520)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 444 (520)
.. .++++.+. +..++.....+.. ..|++.+.-+|+.+.++++-.++||.+.|++.| ...+|...+......
T Consensus 301 lw-~~llG~G~-G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD-----a~gsw~~~~~~l~~~ 373 (395)
T COG2807 301 LW-ALLLGLGQ-GGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD-----ATGSWSAPLVLLALA 373 (395)
T ss_pred HH-HHHHhCcc-chHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH-----hcCChHHHHHHHHHH
Confidence 33 34444433 4444444444433 345558889999999999999999999999999 567899999988888
Q ss_pred HHHHHHHHHHhcCC
Q psy10491 445 YITCATVYLLFSSG 458 (520)
Q Consensus 445 ~~~~~~~~~~~~~~ 458 (520)
.+...+..+...|.
T Consensus 374 ~i~m~i~Gl~a~r~ 387 (395)
T COG2807 374 TLLMLIFGLRAGRN 387 (395)
T ss_pred HHHHHHHHhhcchh
Confidence 88877777665443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=241.95 Aligned_cols=374 Identities=12% Similarity=0.068 Sum_probs=258.6
Q ss_pred HHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHH
Q psy10491 37 LFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNA 116 (520)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~ 116 (520)
+...+++.+.....+.+.+|.... +++|.++.+.|++.+++.+++.++++++|+++||+|||+.++.++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~ 79 (396)
T TIGR00882 7 FGLFFFLYFFIMSAYFPFFPIWLH-------DVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLL 79 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 344455555555556666665542 6789999999999999999999999999999999999999988777665
Q ss_pred HHHHHHH---hHh---hhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhh
Q psy10491 117 VFALLVP---VSS---QSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLA 189 (520)
Q Consensus 117 ~~~~~~~---~~~---~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~ 189 (520)
++..... +.+ .+.+ .+++.|++.|++.+...+....+..|.. ++++..++......++|.++|+++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~ 157 (396)
T TIGR00882 80 VLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILF 157 (396)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhh
Confidence 5443321 111 1234 5677899999999888888888887754 34466778888888999999999999886
Q ss_pred ccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHH
Q psy10491 190 YGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSI 269 (520)
Q Consensus 190 ~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (520)
+ .+||.+|++.+++.++..++.+...||++++++. + ++ ... ++++.+..+.++++|+|+++..
T Consensus 158 ~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~------~~~----~~~~~~~~~~~~~l~~~~~~~~ 220 (396)
T TIGR00882 158 S----IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATV-A--NA------LGA----NASAFSLKLALELFRQRKFWMF 220 (396)
T ss_pred c----cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhh-h--cc------ccc----ccCCCCHHHHHHHHcCCcHHHH
Confidence 5 5999999999888887655554444443321110 0 00 000 0111222356788899998877
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhc---CCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhh
Q psy10491 270 LVAHMGQNFGYETLMTMLPTFLKEVL---HFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIG 346 (520)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 346 (520)
.+..+.....+.....+.+.|+++.+ +.+....+.+.+...+...++.+..+++.||+++|+.+ .++
T Consensus 221 ~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l----------~~~ 290 (396)
T TIGR00882 221 VLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNAL----------LIA 290 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH----------HHH
Confidence 77766666666666677888887764 45556678888888889999999999999999999876 455
Q ss_pred chhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHH-HHHHHhhHHhHHHHHHHHhhc
Q psy10491 347 EYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSI-TNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~-~~~~~~~g~~i~~~~~g~l~~ 424 (520)
..+.++.........+.... ....++.+............+..+..+++ ++++.+. .+....+|+.++|.+.|++.|
T Consensus 291 ~~l~~l~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~ 369 (396)
T TIGR00882 291 GTIMSVRIIGSSFATTALEV-VILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD 369 (396)
T ss_pred HHHHHHHHHHHHhcCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence 55555555554444333333 33233222222222222223334444444 7776665 578899999999999999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHH
Q psy10491 425 WFQHDEMLSWKVVFLVSAVLYITCATVYL 453 (520)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (520)
..||+.+|.+.+++.++..++..
T Consensus 370 ------~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 370 ------SIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred ------hcccHHHHHHHHHHHHHHHHHHH
Confidence 56899999998888877766554
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=274.67 Aligned_cols=372 Identities=13% Similarity=0.086 Sum_probs=256.7
Q ss_pred HHHHHHHHHHHHHHHhhhheeee-eccCCCCCcccCCCCCC-hhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHH-
Q psy10491 34 TFMLFIGMANAYVMRTNMSVAIV-AMTNPESSIHVDSKSWS-TVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAY- 110 (520)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~s-~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~- 110 (520)
+...++..+.+.+....+..... .+. ++.+.+ ....++..+++.+.+.++++++|+++||+|||+++..
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~ 88 (1140)
T PRK06814 17 FWTQFFGAFNDNFLKNALVILILYGLS--------GALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKIL 88 (1140)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhc--------cccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHH
Confidence 34444555555555554444333 333 333333 3457889999999999999999999999999997633
Q ss_pred --HHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhh
Q psy10491 111 --GMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGY 187 (520)
Q Consensus 111 --~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~ 187 (520)
+.++..+..+.....+ ++ +++++|+++|++.+...|+..+++.|++++++|++++|+.+++.++|.++||+++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~--s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~ 166 (1140)
T PRK06814 89 KFAEIGIAALAIYGFHLN--SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGL 166 (1140)
T ss_pred HHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222333 56 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHH
Q psy10491 188 LAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFL 267 (520)
Q Consensus 188 l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (520)
+... .+|++.|+..++..++ .++..+.+|+++......+.+.. ..+.....++.+.++|.++
T Consensus 167 l~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 228 (1140)
T PRK06814 167 ATIS---GNFVILVALLMGIAVL-GWLASLFIPKTGNAAPDLKIDRN--------------IIRSTITLLKYAKADKRIW 228 (1140)
T ss_pred HHhc---cccHHHHHHHHHHHHH-HHHHHhhCCCCCCCCCCCeeccc--------------hHHHHHHHHHHHhcCchHH
Confidence 9998 8999999544444443 55556667765433221110000 0001112456778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhc
Q psy10491 268 SILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGE 347 (520)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 347 (520)
...+..++.++....+..++|.|+++.+|.++...+++.+..+++.+++.++.|++.|+..+++.+. .+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~----------~~~ 298 (1140)
T PRK06814 229 LAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVP----------IGA 298 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeeh----------HHH
Confidence 9888888888888888899999999989999999999999999999999999999998776665442 222
Q ss_pred hhhhhhhhhhhcc-------------------CCChHHHHHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHH
Q psy10491 348 YGPGLMFIIPVIL-------------------GFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCS 407 (520)
Q Consensus 348 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~ 407 (520)
++.++..+.+.+. ..+.+...+..++.+++.+...+...+...+..|+ .+|+++|+.+++
T Consensus 299 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~ 378 (1140)
T PRK06814 299 LLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVL 378 (1140)
T ss_pred HHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHH
Confidence 2222222111111 12223333333333334444554556666666555 499999999999
Q ss_pred HhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHH
Q psy10491 408 ANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITC 448 (520)
Q Consensus 408 ~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (520)
.+++..+++.+.|.+.+ ...++...+++.+++.++.
T Consensus 379 ~~~~~~ig~~~~g~l~~-----~~~~~~~~~~~~~~~~~~~ 414 (1140)
T PRK06814 379 NAAFMVAGTIILALLQA-----LGFSIPWIILFIALANLIV 414 (1140)
T ss_pred HHHHHHHHHHHHHHHHH-----hccCHHHHHHHHHHHHHHH
Confidence 99999999999999985 1345666655555443333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-29 Score=256.58 Aligned_cols=290 Identities=15% Similarity=0.244 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHH
Q psy10491 32 WTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYG 111 (520)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~ 111 (520)
..++.+++.++...+....++.+++.+. ++|+++.++.|++.+.+.++++++.++.|+++||+|||+.+.++
T Consensus 33 ~~~~~~~~~~~~~~~~~g~~~~~l~~ie--------k~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g 104 (633)
T TIGR00805 33 VFSLLLTCAQLQGLLYNGLVNSSLTTIE--------RRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIG 104 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhh--------hhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEec
Confidence 3434555677777788888999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHh----------------------------------------------h--h-HH-HHHHHHHHHhc
Q psy10491 112 MVVNAVFALLVPVSS----------------------------------------------Q--S-IW-CLAAVRFIQGM 141 (520)
Q Consensus 112 ~~~~~~~~~~~~~~~----------------------------------------------~--~-~~-~l~~~r~l~G~ 141 (520)
+++++++++++++.+ . + .+ .++++|+++|+
T Consensus 105 ~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~Gi 184 (633)
T TIGR00805 105 CAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGI 184 (633)
T ss_pred HHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhc
Confidence 999999999998862 0 1 35 78899999999
Q ss_pred cccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccc-------------------cCcchHHH
Q psy10491 142 GEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFL-------------------QGWPAIFY 202 (520)
Q Consensus 142 g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~-------------------~gwr~~f~ 202 (520)
|.+..++...+++.|++|+++|+++++++..+..+|.++|+++++++.+...+ .+|+..|+
T Consensus 185 G~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fl 264 (633)
T TIGR00805 185 GATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFL 264 (633)
T ss_pred cCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764210 02777898
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC-CCCChHHHH-HHHhhccCCccc---cccccCccchhhhccchhHHHHHHHHHHHH
Q psy10491 203 VFGVICLIWCVLFIFLVYENPHSD-KRVSVEEKE-YILYSIFGGDII---EDLKASSIPWGDIVKSGPFLSILVAHMGQN 277 (520)
Q Consensus 203 i~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (520)
+.+++.++.+++ ++++|++.+.. .+.+.+..+ .......+.... +..+.....+++++++|.++...+..++..
T Consensus 265 i~g~l~~l~~v~-l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~ 343 (633)
T TIGR00805 265 ICGGVALLTSIP-FFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDS 343 (633)
T ss_pred HHHHHHHHHHHH-HHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 888888775554 44556543322 111111000 000000000000 001112345678899999999999999999
Q ss_pred HHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHH-HHHHHHHHHHHHHHHHHhh
Q psy10491 278 FGYETLMTMLPTFLKEVLHFDMIKNGLISATPYI-AMFITSSVLNYLADYFIRK 330 (520)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~~ 330 (520)
...+++..|+|.|+++.+|+++.+++++.....+ +.+++.+++|+++||++.+
T Consensus 344 ~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 344 LAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 9999999999999999999999999999887776 5678999999999998843
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-28 Score=241.33 Aligned_cols=377 Identities=18% Similarity=0.175 Sum_probs=282.9
Q ss_pred HHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHH
Q psy10491 36 MLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVN 115 (520)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~ 115 (520)
.++++.+++.+.........+-+. .+..-|+...+++..+..+...+.+++.|.++||++|||+++.+-++.
T Consensus 14 ~lw~a~~iS~lG~~~~~va~~wlv--------~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~ 85 (524)
T PF05977_consen 14 RLWIAQLISNLGDWMQTVALAWLV--------TQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLR 85 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 455556666666666666666665 345558999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHhHhh---hHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcc
Q psy10491 116 AVFALLVPVSSQ---SIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYG 191 (520)
Q Consensus 116 ~~~~~~~~~~~~---~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~ 191 (520)
++..+..++... .+. .+++.-++.|++.+...|+.++++.|.+|+++...++++.+...++..++||.++|.+...
T Consensus 86 ~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~ 165 (524)
T PF05977_consen 86 ALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF 165 (524)
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 766555544311 134 8889999999999999999999999999999999999999999999999999999999887
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHH
Q psy10491 192 TFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILV 271 (520)
Q Consensus 192 ~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (520)
.|-.++|.+.++..++ .+......+.+++..+ .+. +. ..+.-+..++.+.++|.+...++
T Consensus 166 ---~G~~~~f~inalsfl~-~i~~l~~~~~~~~~~~-~~~-e~--------------~~~~l~~G~ryv~~~~~l~~~l~ 225 (524)
T PF05977_consen 166 ---FGAAAAFLINALSFLI-SILALLRWKPPPPPSS-LPR-ER--------------FFSALREGLRYVRSSPPLRSVLL 225 (524)
T ss_pred ---HHHHHHHHHHHHHHHH-HHHHHHHccccccccc-cch-hh--------------hhhhHHHHHHHHhcchHHHHHHH
Confidence 7888999998876655 3333333332221111 111 10 11112234455666777776666
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhh
Q psy10491 272 AHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPG 351 (520)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 351 (520)
..++.++....+...+|.+.++.+|.++...|++.+..+++.++|.++.+++.+|+++++.+ ..+.++.+
T Consensus 226 ~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv----------~~~~~~~a 295 (524)
T PF05977_consen 226 RSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLV----------LLASLLFA 295 (524)
T ss_pred HHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhh----------HHHHHHHH
Confidence 66666666666777899999999999999999999999999999999999999998887765 45566666
Q ss_pred hhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccc
Q psy10491 352 LMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDE 430 (520)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~ 430 (520)
++++.+.+.++. +.....+++.+.+.........+..+...|++ +|++++++++....+..+|..+.|.+.+
T Consensus 296 ~~~~~lal~~~~-~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~------ 368 (524)
T PF05977_consen 296 LALLLLALSPSF-WLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD------ 368 (524)
T ss_pred HHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 666666665543 33334444444444555555556666666666 9999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 431 MLSWKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
..+...++.+.++..+++.++....+-
T Consensus 369 ~~g~~~al~~a~~~lll~~~~~~~~~l 395 (524)
T PF05977_consen 369 HFGVRTALLIAGAALLLSALIALRFPL 395 (524)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 668888888888777777766655543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=214.33 Aligned_cols=400 Identities=18% Similarity=0.207 Sum_probs=296.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcch
Q psy10491 27 LGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHK 106 (520)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~ 106 (520)
.+.+|........+...+.+.....+.+.|... ..++.+..|..+++.....+..+++..||.++|++|||+
T Consensus 73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~--------~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~ 144 (528)
T KOG0253|consen 73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALD--------EVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRK 144 (528)
T ss_pred ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHH--------hhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcch
Confidence 356677777788888888877777788888887 789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhh
Q psy10491 107 MLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVS 185 (520)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~ 185 (520)
.+.+..+...+...+.+.++ ++ ++++.|.+.|+|.|+ .|...++-.|..|..+|+..+-.. ..+.+|.+....+.
T Consensus 145 ~f~~T~l~t~v~~~is~~sp--nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~la 220 (528)
T KOG0253|consen 145 GFNLTFLVTGVFGVISGASP--NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLA 220 (528)
T ss_pred hhhhhHHHHHHHHHhhcCCC--CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHH
Confidence 99999999999999999998 88 999999999999998 888899999999999999887777 99999999999999
Q ss_pred hhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChH-HHHHHHhhcc---CC--------------ccc
Q psy10491 186 GYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVE-EKEYILYSIF---GG--------------DII 247 (520)
Q Consensus 186 ~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~---~~--------------~~~ 247 (520)
-.+... .||||.....+.+..+ +....+++||+|+..-...++ +.-+..+++. .. .++
T Consensus 221 w~vm~~---~gwr~~l~~~~~pl~~-~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~ 296 (528)
T KOG0253|consen 221 WGVMSN---FGWRYLLFTSSTPLMF-AARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQ 296 (528)
T ss_pred HHHHHh---hhHHHHHHHHHhHHHH-HHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhh
Confidence 888887 8999998888865555 566677899999875433222 2222222111 00 000
Q ss_pred c----------ccccCccchhhhccc---hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhc--C----------------
Q psy10491 248 E----------DLKASSIPWGDIVKS---GPFLSILVAHMGQNFGYETLMTMLPTFLKEVL--H---------------- 296 (520)
Q Consensus 248 ~----------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g---------------- 296 (520)
| ..++......+++.. +..+.+...++..-+.+++........++... +
T Consensus 297 e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c 376 (528)
T KOG0253|consen 297 EESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANC 376 (528)
T ss_pred hhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcC
Confidence 0 011122233333321 23344555566666666666555554444321 0
Q ss_pred -CCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHH
Q psy10491 297 -FDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAM 375 (520)
Q Consensus 297 -~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (520)
.+...--.=..+..+..+.|.++.+++.||+|||+.+ ...+++.++..+.+...... .......+.+-
T Consensus 377 ~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTM----------al~l~~f~iflfll~~c~~r-n~~tvllf~ar 445 (528)
T KOG0253|consen 377 PLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTM----------ALSLILFGIFLFLLTTCKTR-NAYTVLLFTAR 445 (528)
T ss_pred CccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHH----------HHHHHHHHHHHHHHHHhcCc-chhHHHHHHHH
Confidence 0111111224455678889999999999999999987 67777777776666554433 34444555556
Q ss_pred HHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHH
Q psy10491 376 ACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLL 454 (520)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (520)
++..+.+...+.+..|++|.. |+++.|.+.....+|+++.|.+. ...+ .....+..+.+++++++.++..+
T Consensus 446 afisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e-------~s~sl~i~vy~~~~ilagIavcf 517 (528)
T KOG0253|consen 446 AFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAE-------LSTSLPIFVYGALFILAGIAVCF 517 (528)
T ss_pred HHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhc-------cceeehHHHHHHHHHHHHHHhee
Confidence 666788888999999999998 99999999999999999999998 3333 34455667778888888888888
Q ss_pred hcCCCcc
Q psy10491 455 FSSGRKQ 461 (520)
Q Consensus 455 ~~~~~~~ 461 (520)
++.+.+.
T Consensus 518 fPiEtkG 524 (528)
T KOG0253|consen 518 FPIETKG 524 (528)
T ss_pred eeeccCC
Confidence 8766554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-28 Score=271.22 Aligned_cols=346 Identities=15% Similarity=0.137 Sum_probs=247.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHh-hhHH-HHHHHHHHHhccccCchhhHH
Q psy10491 74 TVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSS-QSIW-CLAAVRFIQGMGEGPIVPCTH 151 (520)
Q Consensus 74 ~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~-~l~~~r~l~G~g~~~~~~~~~ 151 (520)
....+++.+++.+++.++++++|+++||+|||++++++.++..++.++..++. .+++ .++++|+++|++.+...++..
T Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 125 (1146)
T PRK08633 46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKY 125 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHH
Confidence 45579999999999999999999999999999999999877766666554431 1256 999999999999999999999
Q ss_pred HHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccc------cccCcchHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy10491 152 AILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGT------FLQGWPAIFYVFGVICLIWCVLFIFLVYENPHS 225 (520)
Q Consensus 152 ~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~------~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~ 225 (520)
+++.|++|+++|++++++...+.++|.++|+++++++.+.. ...+|++.+.+..+...+..++..+.+||.++.
T Consensus 126 ~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1146)
T PRK08633 126 GIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAA 205 (1146)
T ss_pred hhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCC
Confidence 99999999999999999999999999999999999987640 002455555554444444444555566776654
Q ss_pred CCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcc-hhHH
Q psy10491 226 DKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMI-KNGL 304 (520)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~~~ 304 (520)
.......+.. ...+.....++.++++|.++...+..++..+.......++|.|+.+.+|++.. ..++
T Consensus 206 ~~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~ 273 (1146)
T PRK08633 206 APEVFDKKKY------------LFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQY 273 (1146)
T ss_pred Cccccccccc------------ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHH
Confidence 3221100000 00011123456678888888877777777777777888999999998999998 8999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccc
Q psy10491 305 ISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAG 384 (520)
Q Consensus 305 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (520)
+.+...++.+++.++.+++.||+++++.+ .++.++.+++++.+.+.. +.+..++..++.+++.+...+.
T Consensus 274 ~~~~~~ig~~~g~~~~g~l~~r~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~ 342 (1146)
T PRK08633 274 LLAASAIGIGIGSLLAGRLSGRHIELGLV----------PLGALGLALSLFLLPTAP-SLASVLVLFFLFGFSAGLFIVP 342 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceEccch----------hHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999888765 344455555555554444 2233333333333333444555
Q ss_pred cceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHH
Q psy10491 385 FKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYIT 447 (520)
Q Consensus 385 ~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (520)
...+..+..|++ ||+++|+.+++.+++.++++.+.+.+.. ...++...+++.+.+.++
T Consensus 343 ~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 343 LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-----LGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-----hccCHHHHHHHHHHHHHH
Confidence 556666666554 9999999999999999888877766544 123444455554444333
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-30 Score=237.91 Aligned_cols=426 Identities=13% Similarity=0.067 Sum_probs=306.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM 107 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~ 107 (520)
+++...+.+..++.+.+.+|...++.+.|-+..-+.....+.-+.++...+.+..+..+|..+||++.|++.||+|||++
T Consensus 37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v 116 (538)
T KOG0252|consen 37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV 116 (538)
T ss_pred HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 44556677788899999999999999888777544432222334667778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHh----h-hHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHh
Q psy10491 108 LAYGMVVNAVFALLVPVSS----Q-SIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIIS 181 (520)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~----~-~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g 181 (520)
+...++++.++++++++.. + .-. ++...|++.|+|.|+-+|.+.++.+|....++||...+.+.+..+.|.+.|
T Consensus 117 YG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG 196 (538)
T KOG0252|consen 117 YGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAG 196 (538)
T ss_pred hhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhc
Confidence 9999999999999887762 1 135 999999999999999999999999999999999999999999999999888
Q ss_pred hhhhhhhhccc------------cccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHH---hhcc----
Q psy10491 182 YPVSGYLAYGT------------FLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYIL---YSIF---- 242 (520)
Q Consensus 182 ~~l~~~l~~~~------------~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~---~~~~---- 242 (520)
.+++-.+.... -+.=||..|.+.++++++ .+...+.+||+++...-.+.+.+.... +...
T Consensus 197 ~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~-~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~ 275 (538)
T KOG0252|consen 197 GIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALL-VLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIE 275 (538)
T ss_pred cHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHH-HHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccc
Confidence 88776654310 013499999887777766 566677789988765211111000000 0000
Q ss_pred CCccccccccCccc----hhhhccc---hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHH--------HHH
Q psy10491 243 GGDIIEDLKASSIP----WGDIVKS---GPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGL--------ISA 307 (520)
Q Consensus 243 ~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~--------~~~ 307 (520)
.....+...+.+.. +...+.. +++...+..+|+...+++....+....+++. |+.+..... ...
T Consensus 276 ~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~i-g~~~~~~~~~~~~~vA~~~~ 354 (538)
T KOG0252|consen 276 AESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAI-GVIPSANTYHELFKVAEGNL 354 (538)
T ss_pred hhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhh-ccCCCcchHHHHHHHHHHHH
Confidence 00000011111111 2222222 3466677888888889999999999998874 776654433 122
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCC----ChHHHHHHHHHHHHHhhccc
Q psy10491 308 TPYIA-MFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGF----THTPTIVCLILAMACNGGIY 382 (520)
Q Consensus 308 ~~~~~-~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 382 (520)
+...+ .+.|-.+..+++|++||++.. ..++.++.+..+.+....+ .....+...+..++...+..
T Consensus 355 iia~~~~vPGyw~tv~~id~iGRk~iq----------~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn 424 (538)
T KOG0252|consen 355 IIAVCSTVPGYWFTVYFIDIIGRKYIQ----------LMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN 424 (538)
T ss_pred HHHHHccCCceeEEEEEeehhhhHHHH----------HhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC
Confidence 22222 223555666789999999987 5677777777666665544 12334444455556666677
Q ss_pred cccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q psy10491 383 AGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQ 461 (520)
Q Consensus 383 ~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (520)
.....+..|++|.+ |+++.|+..+++.+|++++...++++.+.- .....+.+.++++++++.+++.+..+++++++++
T Consensus 425 ~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~-yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~ 503 (538)
T KOG0252|consen 425 ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN-YPPNIGVRNVFIILAGCMLLGILFTLLIPETKGK 503 (538)
T ss_pred ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc-CCccccchHHHHHHHHHHHHhHheeEEeeccccc
Confidence 77788889999988 999999999999999999999999988711 1235688999999999999999999999866655
Q ss_pred cCCCC
Q psy10491 462 YWDKN 466 (520)
Q Consensus 462 ~~~~~ 466 (520)
..++.
T Consensus 504 ~leei 508 (538)
T KOG0252|consen 504 SLEEI 508 (538)
T ss_pred CHHHh
Confidence 54443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=218.89 Aligned_cols=371 Identities=13% Similarity=0.142 Sum_probs=285.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHH
Q psy10491 32 WTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYG 111 (520)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~ 111 (520)
.....+...+++..+......+++|++. +.|+++..|.+++..+++.+|.+.+++.|++.+|+|+|+.+++|
T Consensus 13 ~~~v~~t~lFfl~G~~~~l~diLip~l~--------~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lg 84 (422)
T COG0738 13 LAFVLLTSLFFLWGFITCLNDILIPHLK--------EVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLG 84 (422)
T ss_pred eHHHHHHHHHHHHHHHhhcchhhHHHHH--------HHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHH
Confidence 3445555566677777778889999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHh-hhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhh
Q psy10491 112 MVVNAVFALLVPVSS-QSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLA 189 (520)
Q Consensus 112 ~~~~~~~~~~~~~~~-~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~ 189 (520)
+.++++++.++.-+. ..+| .++++-++.|.|.+...+.+..+++...++++-.+.+.+.+..+++|.+++|++++.+.
T Consensus 85 L~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~li 164 (422)
T COG0738 85 LLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLI 164 (422)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999985332 2378 99999999999999999999999999999999999999999999999999999999887
Q ss_pred ccc----------------cccCcchHHHHHHHHHHHHHHHHHHH-hhcCCCCCCCCChHHHHHHHhhccCCcccccccc
Q psy10491 190 YGT----------------FLQGWPAIFYVFGVICLIWCVLFIFL-VYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKA 252 (520)
Q Consensus 190 ~~~----------------~~~gwr~~f~i~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (520)
.++ ....|+++|.+.+....++.+..... .|+.++...+ ..+.
T Consensus 165 ls~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~--------------------~~~~ 224 (422)
T COG0738 165 LSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPS--------------------LGAS 224 (422)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccc--------------------cccc
Confidence 720 01358889988777766644333221 1222111110 1111
Q ss_pred CccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10491 253 SSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKI 332 (520)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~ 332 (520)
+.....+++++|+++...+..+++-........|++.|+.+..|.+..+++...+....+.++|++++.++.+|+...+.
T Consensus 225 ~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~ 304 (422)
T COG0738 225 GSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKY 304 (422)
T ss_pred ccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 11256889999999999999999999999999999999999779999999999999999999999999999999999887
Q ss_pred ccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHH
Q psy10491 333 LSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVG 412 (520)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~ 412 (520)
+ .+...+..+.++...+.+ +.+......++ +++++..+|.......+..|++...+.+ .-....+|+
T Consensus 305 L----------af~a~~~ill~~~~~l~~-g~v~~~~l~~i-g~F~simfPTIfslal~~l~~~ts~~s~-~l~maivGG 371 (422)
T COG0738 305 L----------AFYALIAILLLLAVALIG-GVVALYALFLI-GLFNSIMFPTIFSLALKNLGEHTSVGSG-LLVMAIVGG 371 (422)
T ss_pred H----------HHHHHHHHHHHHHHHHhc-ChHHHHHHHHH-HHHhHHHHHHHHHHHHhccCccccccce-eeeeheecc
Confidence 6 333333333333334343 33344444444 4456778888888887777755444444 356678999
Q ss_pred hHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHH
Q psy10491 413 MLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCA 449 (520)
Q Consensus 413 ~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (520)
++-|++.|++.| ..+....+......+.+..
T Consensus 372 AiiP~l~G~i~d------~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 372 AIIPPLQGVIAD------MFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred hHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHH
Confidence 999999999999 4555555553443333333
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-28 Score=244.74 Aligned_cols=363 Identities=17% Similarity=0.201 Sum_probs=255.6
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHH
Q psy10491 75 VERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAI 153 (520)
Q Consensus 75 ~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~ 153 (520)
++.+|+.+++.++..+++++.|+++|++|||+.++++.+++.++.+++++++ ++ +++++|+++|+|.|+...+.+.+
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~--~~~~l~~GR~l~G~g~G~~~~~~piy 166 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP--SWYQLIVGRILTGLGVGGASVLAPVY 166 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhccchhhhhhcchhh
Confidence 5679999999999999999999999999999999999999999999999997 88 99999999999999999999999
Q ss_pred HhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CChH
Q psy10491 154 LAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKR-VSVE 232 (520)
Q Consensus 154 i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~ 232 (520)
++|..|++.||...+..+....+|..++..++....+. . .+||..+.+..+++++..+. .+++||+|++.-+ .+.+
T Consensus 167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~ 243 (513)
T KOG0254|consen 167 ISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLE 243 (513)
T ss_pred HhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChH
Confidence 99999999999999999999999999996555554432 1 48999999999988886666 8899999987644 3344
Q ss_pred HHHHHHhhccCCc--ccc-------------c-cccCccchhhhcc----chhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy10491 233 EKEYILYSIFGGD--IIE-------------D-LKASSIPWGDIVK----SGPFLSILVAHMGQNFGYETLMTMLPTFLK 292 (520)
Q Consensus 233 ~~~~~~~~~~~~~--~~~-------------~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (520)
+.+.......... ..+ . ....+..+.++++ ++.++...+..+.+..+......|.+.+++
T Consensus 244 ~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~ 323 (513)
T KOG0254|consen 244 EAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFK 323 (513)
T ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHH
Confidence 4444443333210 000 0 0011112333333 233455666666677777788889999988
Q ss_pred hhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhcc----C-------
Q psy10491 293 EVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVIL----G------- 361 (520)
Q Consensus 293 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------- 361 (520)
.. |.+... .......++..+++..+..++.||+|||+.+.. +...+.++.+++... .
T Consensus 324 ~~-g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~----------s~~~m~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
T KOG0254|consen 324 SA-GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLF----------GAAGMSICLVILAVVGVFALYYPNSSK 391 (513)
T ss_pred hc-CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH----------hHHHHHHHHHHHHHHHHHhccCCCccc
Confidence 86 666443 555666777888888888999999999998843 333333333322211 0
Q ss_pred C-ChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHH
Q psy10491 362 F-THTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFL 439 (520)
Q Consensus 362 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~ 439 (520)
. ........++....+.....+..+.+..|.+|.+ |+.+.++...+..+...+-......+.+ ..+....|.
T Consensus 392 ~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~------~~~~~~~f~ 465 (513)
T KOG0254|consen 392 GAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITE------ALGIGGTFG 465 (513)
T ss_pred chhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH------hccccchHH
Confidence 1 1123333334444455566667777889999988 9999999999888887666666555555 122233444
Q ss_pred HHHHHHHHHHH--HHHHhcCCCc
Q psy10491 440 VSAVLYITCAT--VYLLFSSGRK 460 (520)
Q Consensus 440 ~~~~~~~~~~~--~~~~~~~~~~ 460 (520)
..+.++.+... ..+..++++.
T Consensus 466 ~f~~~~~~~~~~fv~~~~pETkg 488 (513)
T KOG0254|consen 466 YFGGICLLSLIIFVFFFVPETKG 488 (513)
T ss_pred HHHHHHHHHHHHHheEEcccCCC
Confidence 44444444444 3344444443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-28 Score=229.22 Aligned_cols=349 Identities=12% Similarity=0.098 Sum_probs=242.0
Q ss_pred HHHhhhheeeeeccCCCCCcccCCCCCChhh-hHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHh
Q psy10491 46 VMRTNMSVAIVAMTNPESSIHVDSKSWSTVE-RGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPV 124 (520)
Q Consensus 46 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~ 124 (520)
-.+.+.+.+.|.+. +++|+|..| .|.+.+++..+|++++++.|+++||+|.|+++.++++.+++.+++.++
T Consensus 40 e~R~n~s~a~p~L~--------~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f 111 (511)
T TIGR00806 40 QFRPGESFITPYLL--------TVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL 111 (511)
T ss_pred HhhchHHHHHHHHH--------HHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 35788889999999 899999999 999999999999999999999999999999999999999999999999
Q ss_pred HhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHH
Q psy10491 125 SSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYV 203 (520)
Q Consensus 125 ~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i 203 (520)
+. ++ .+.+.|++.|++.|..+ +...++..|+|+++|+++.++...+..+|.++++++++++. . .|||+.+.+
T Consensus 112 a~--Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s---~gWr~y~~L 184 (511)
T TIGR00806 112 GT--SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-T---LGWISYSTL 184 (511)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h---cCchhHHHH
Confidence 96 77 99999999999999999 99999999999999999999999999999999999999944 4 799976654
Q ss_pred H--HHHHHHHHHHHHHHhhcCCCCCCCCChHHHH-HH---HhhccCCcc--ccc-cc--------cCccchhhhccchhH
Q psy10491 204 F--GVICLIWCVLFIFLVYENPHSDKRVSVEEKE-YI---LYSIFGGDI--IED-LK--------ASSIPWGDIVKSGPF 266 (520)
Q Consensus 204 ~--~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~---~~~~~~~~~--~~~-~~--------~~~~~~~~~~~~~~~ 266 (520)
. .+.+..+++++.+++|..++..--.+.++.+ .. .+....... ..+ .+ .-...+++..+||.+
T Consensus 185 n~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~v 264 (511)
T TIGR00806 185 NIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQL 264 (511)
T ss_pred HHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcch
Confidence 3 2333344566777888544421111100000 00 000000000 000 00 001223445678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhh
Q psy10491 267 LSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIG 346 (520)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 346 (520)
+...+-+.+...+++.+.+|......+..+-.+...|.+-++..+.+.+..+..|++-.++.+...+ .+.+.
T Consensus 265 l~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l--------~l~v~ 336 (511)
T TIGR00806 265 LLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKL--------LIAVV 336 (511)
T ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHH--------HHHHH
Confidence 8888888888889988888887777665342233567788888888888899999885544322111 12333
Q ss_pred chhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceee-ccCCCCcchhHHHHHHHHHhhHHhHHHHH
Q psy10491 347 EYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNH-IDISPCFAGILMSITNCSANVVGMLAPTI 418 (520)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~g~~~g~~~~~~~~g~~i~~~~ 418 (520)
.++.+..++++.+.. +.++..+..++......+..+.....+ ..+..+.-|..+|+.+++.-+-..+-..+
T Consensus 337 s~~~~gll~~m~~t~-~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 337 SAIQAGLVFWMSQSH-DIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred HHHHHHHhhhhhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence 333444444444444 445555555444444444444444433 34444557999999777666655544433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-28 Score=234.07 Aligned_cols=319 Identities=14% Similarity=0.075 Sum_probs=233.4
Q ss_pred hhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhccc-----Ccchh-HHHHHHHHHHHHHHHH
Q psy10491 50 NMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNH-----DSHKM-LAYGMVVNAVFALLVP 123 (520)
Q Consensus 50 ~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~-----Grr~~-l~~~~~~~~~~~~~~~ 123 (520)
.+++..|.+. +|+|+|.+++|++.+. .+...+ .+++|+++||+ ||||. ++.+.++.++...+.+
T Consensus 6 ~~~~~~~~~~--------~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~ 75 (356)
T TIGR00901 6 LVGNTLPYWL--------RSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS 75 (356)
T ss_pred hHHhHHHHHH--------HHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 3455677777 8999999999999755 555555 99999999998 89997 5677777777777777
Q ss_pred hHhh-hHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccC-----
Q psy10491 124 VSSQ-SIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQG----- 196 (520)
Q Consensus 124 ~~~~-~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~g----- 196 (520)
+.++ .+. .+....++.+++.+...++..+++.|++|+|+|+++.++...+..+|.++++.+++.+.+. .+
T Consensus 76 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~---~g~~~~~ 152 (356)
T TIGR00901 76 FLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP---EFANTGL 152 (356)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh---ccccccc
Confidence 7632 144 6777788888888888999999999999999999999999999999999999999988876 55
Q ss_pred ---cchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchh---HHHHH
Q psy10491 197 ---WPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGP---FLSIL 270 (520)
Q Consensus 197 ---wr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 270 (520)
||..|++.++..++..+..++..||+++..+. +++++ ++.+..+++++++|. ++...
T Consensus 153 ~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 215 (356)
T TIGR00901 153 ITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASV-PKPLT----------------QAVLKPIREFFQRKNMIQALLLL 215 (356)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhccCCCccccc-chhHH----------------HHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999887777454444456664332111 11100 001123456666665 77777
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHH-HHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchh
Q psy10491 271 VAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPY-IAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYG 349 (520)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 349 (520)
+..++..........+.|.|+++ +|+++.+.+.+....+ +..+++.++++++.||+|+|+.+ ..+.++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l----------~~~~~~ 284 (356)
T TIGR00901 216 LLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYAL----------LLFGIV 284 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH----------HHHHHH
Confidence 77777778888888999999988 7999999998887766 57789999999999999998876 344444
Q ss_pred hhhhhhhhhccC----------CChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHh
Q psy10491 350 PGLMFIIPVILG----------FTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSAN 409 (520)
Q Consensus 350 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~ 409 (520)
..+......+.. +..+....+.++..+..+...+....+..+..|++ ||+.+|+.+...+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 285 QALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 444433332221 12233444444445555667777777777776665 9999999887664
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-28 Score=219.63 Aligned_cols=336 Identities=16% Similarity=0.135 Sum_probs=228.2
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~ 146 (520)
++-+.+....|.+.|.|++.+.+.++.+|.++||+|||+++++++...++...+.+++. ++ .++++|++.|+..| .
T Consensus 61 ~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~--~F~afv~aR~l~Gi~kg-n 137 (451)
T KOG2615|consen 61 EPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR--NFAAFVLARFLGGIFKG-N 137 (451)
T ss_pred CcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhccC-c
Confidence 34445677889999999999999999999999999999999999999999999999997 88 88888999999987 5
Q ss_pred hhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHH----HHHHHHHHHHHHHhhcC
Q psy10491 147 VPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFG----VICLIWCVLFIFLVYEN 222 (520)
Q Consensus 147 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~----~~~~~~~~~~~~~~~e~ 222 (520)
..+..++++|.+++|+|+++++.+...+++|.++||.+|+++.+... ..=+.+|.... ++.........+++||+
T Consensus 138 l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~-~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 138 LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSS-ISGSYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHh-hhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 67789999999999999999999999999999999999999988210 11222232222 22222123455678888
Q ss_pred CCCCCCCChH----HHHHHHhhccCCccccccccCccchhhhccchh-------HHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy10491 223 PHSDKRVSVE----EKEYILYSIFGGDIIEDLKASSIPWGDIVKSGP-------FLSILVAHMGQNFGYETLMTMLPTFL 291 (520)
Q Consensus 223 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (520)
-+.+++.+++ +.....++. .+.....-....+|++ ...+.+..+.+...+.++.++.+.+-
T Consensus 217 L~~rk~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~ 288 (451)
T KOG2615|consen 217 LPLRKRNDEHSTLQEAADDRLAL--------LKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLT 288 (451)
T ss_pred ccchhhcccccchhhhhhhhhhh--------cchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Confidence 6554433111 110000000 0000111112233332 22344445555555555656666665
Q ss_pred HhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHH--hhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHH
Q psy10491 292 KEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFI--RKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIV 369 (520)
Q Consensus 292 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (520)
.+.+|+++.+.|.+++..++.+.+......+..+|.+ .+-.+ ...+.++.-.++.+........+...
T Consensus 289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l----------~~~l~~~vP~~llls~~~~~~~l~~~ 358 (451)
T KOG2615|consen 289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVL----------LFSLLLIVPAFLLLSLARTPVVLYLG 358 (451)
T ss_pred cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHH----------HHHHHHHHHHHHHHhccccchhhhHH
Confidence 6778999999999999988888887777666666655 22221 34444444444444444433333333
Q ss_pred HHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccc
Q psy10491 370 CLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWF 426 (520)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 426 (520)
. .+-.+......+..+.+.....|++ ||++.|+....+.++.++||.+.|.+..|.
T Consensus 359 s-~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 359 S-TLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred H-HHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 3 3333444555555555555555554 999999999999999999999999998865
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-26 Score=228.86 Aligned_cols=398 Identities=14% Similarity=0.040 Sum_probs=270.4
Q ss_pred HHHHHHHHHHHHhhhheeeeeccCCCCCcccCC--CCCChhhhHHHHHHHHHHHHHhhhhhhhhhcc-cCcchhHHHHHH
Q psy10491 37 LFIGMANAYVMRTNMSVAIVAMTNPESSIHVDS--KSWSTVERGLLLSSFFYGYVLTQIPIGLLTKN-HDSHKMLAYGMV 113 (520)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr-~Grr~~l~~~~~ 113 (520)
+++..+...+..+...+.+|.... ++ +|++..+.+++.+.+.+++.++++++|+++|| +|||+++.++.+
T Consensus 15 l~~~~~~~~~~~~~~~~~L~~yl~-------~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~ 87 (475)
T TIGR00924 15 LFFVELWERFSYYGMQGILAVYLV-------QQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGI 87 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------hCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHH
Confidence 334445544554444555555542 44 89999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCc---chhHHHHHHHHhHHHHHHhhhhhhhhh
Q psy10491 114 VNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGE---RSFLGGIVYSGAQFGTIISYPVSGYLA 189 (520)
Q Consensus 114 ~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~---rg~~~~~~~~~~~~G~~~g~~l~~~l~ 189 (520)
+.+++.++.++++ ++ .++++|++.|+|.|...+...++++|++|+++ |+.+++++..+.++|.++||++++++.
T Consensus 88 ~~~~g~~~~~~~~--~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~ 165 (475)
T TIGR00924 88 VLMLGHFMLAMSI--YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA 165 (475)
T ss_pred HHHHHHHHHHhcc--cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999885 56 88889999999999999999999999998764 889999999999999999999999998
Q ss_pred ccccccCcchHHHHHHHHHHHHHHHHHHHhhcC----CCCCCCCChHHHHHHHhh----------------ccCCccc--
Q psy10491 190 YGTFLQGWPAIFYVFGVICLIWCVLFIFLVYEN----PHSDKRVSVEEKEYILYS----------------IFGGDII-- 247 (520)
Q Consensus 190 ~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~----~~~~~~~~~~~~~~~~~~----------------~~~~~~~-- 247 (520)
++ .|||+.|++.++..++ .++.+++.++. |++.++.+.++++..... ..+....
T Consensus 166 ~~---~g~~~~f~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (475)
T TIGR00924 166 EN---YGYHVGFNLAAVGMVI-GLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANI 241 (475)
T ss_pred Hh---cChHHHHHHHHHHHHH-HHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 87 7999999998765554 34444443322 211111111111100000 0000000
Q ss_pred -------------cc-cccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcc----hhHHHHHhH
Q psy10491 248 -------------ED-LKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMI----KNGLISATP 309 (520)
Q Consensus 248 -------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~----~~~~~~~~~ 309 (520)
.+ ..++.....+-.|...+..+.+...+....+....+.++.+.++..+.+.. ..+++.+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n 321 (475)
T TIGR00924 242 LLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLN 321 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhh
Confidence 00 000001111112223445555566666777777777788887775444322 267888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhc--------cCCChHHHHHHHHHHHHHhhcc
Q psy10491 310 YIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVI--------LGFTHTPTIVCLILAMACNGGI 381 (520)
Q Consensus 310 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 381 (520)
.+..++..++..++..|..+|..-.... .-..+++++.++++..... ...+.++.+...++........
T Consensus 322 ~~~iil~~p~~~~~~~~l~~~~~~~~~~---~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~ 398 (475)
T TIGR00924 322 PFWVVVGSPVLAMIWTRLGRKGKDPTTP---LKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMI 398 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcH---HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHH
Confidence 8888888888777666776642110000 0014566666666555442 1234455566666666667788
Q ss_pred ccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 382 YAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 382 ~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
.|.......+..|++ ||+++|+......+|..+++.+.+...+ ..++...|...++.+++..++.++..
T Consensus 399 ~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 399 SPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV------PQGVTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888776 9999999999999999999998887766 44677777777777776666555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=230.20 Aligned_cols=405 Identities=14% Similarity=0.078 Sum_probs=254.5
Q ss_pred HHHHHHHHHHHHHHHhhhhe-eeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcc-cCcchhHHHH
Q psy10491 34 TFMLFIGMANAYVMRTNMSV-AIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKN-HDSHKMLAYG 111 (520)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr-~Grr~~l~~~ 111 (520)
+..+++..+...+..+.... +..++. +++|++.++.+++.+.+.....+..++.|+++|| +||||+++++
T Consensus 16 ~~~~~~~~~~er~~~y~~~~~l~~yl~--------~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g 87 (489)
T PRK10207 16 FFMIFFVELWERFGYYGVQGILAVFFV--------KQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLG 87 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHH
Confidence 33344444444444444433 333445 7899999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCC--cchhHHHHHHHHhHHHHHHhhhhhhhh
Q psy10491 112 MVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPG--ERSFLGGIVYSGAQFGTIISYPVSGYL 188 (520)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~--~rg~~~~~~~~~~~~G~~~g~~l~~~l 188 (520)
.+++++++++++++. +.. .++++|+++|+|.|...+...++++|++|++ +|+++++++..+.++|..+||.+++++
T Consensus 88 ~~~~~~g~~~~~~~~-~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l 166 (489)
T PRK10207 88 AIVLAIGYFMTGMSL-LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVI 166 (489)
T ss_pred HHHHHHHHHHHHHhc-cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999884 334 5668999999999999999999999999877 458899999999999999999999999
Q ss_pred hccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCC----CCCChHHHHHHH------------hhccCCccccc---
Q psy10491 189 AYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSD----KRVSVEEKEYIL------------YSIFGGDIIED--- 249 (520)
Q Consensus 189 ~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~~------------~~~~~~~~~~~--- 249 (520)
.++ .|||+.|++.++ +++..++.+...++..++. ++.+.+...... ....+......
T Consensus 167 ~~~---~gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (489)
T PRK10207 167 ADK---FGYSVTYNLCGA-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVL 242 (489)
T ss_pred HHh---hChHHHHHHHHH-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 998 899999998654 4443444444444322111 111111111000 00000000000
Q ss_pred ------------cccCccchhhhccchhHHHHHHH--HHHHHHHHHHHHHHhHHHHHhhcCCCc----chhHHHHHhHHH
Q psy10491 250 ------------LKASSIPWGDIVKSGPFLSILVA--HMGQNFGYETLMTMLPTFLKEVLHFDM----IKNGLISATPYI 311 (520)
Q Consensus 250 ------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~s~----~~~~~~~~~~~~ 311 (520)
.+.. ...+.+|+|.+....+. ..+....+....+.++.+.++..+.+. .....+.+...+
T Consensus 243 ~~~~~i~~~~f~~~~~--~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~ 320 (489)
T PRK10207 243 IVLSIVVTIIFFREAF--KLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPF 320 (489)
T ss_pred HHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHH
Confidence 0000 01245566655443322 444455555666778888775333211 122444555566
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhh-----hcc----CCChHHHHHHHHHHHHHhhccc
Q psy10491 312 AMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIP-----VIL----GFTHTPTIVCLILAMACNGGIY 382 (520)
Q Consensus 312 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~ 382 (520)
..++..++.+++.||.++|+.-.... .+ ..+++++.+++++.+ ... ..+.++.+...++.........
T Consensus 321 ~iii~~pl~~~l~~rl~~r~~~~~~~-~k--~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~ 397 (489)
T PRK10207 321 WVVVASPILAGIYTHLGSKGKDLSMP-MK--FTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFIS 397 (489)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcH-HH--HHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 77788888999999999987411000 00 134445544444321 111 1123334444444444455566
Q ss_pred cccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccc----cccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 383 AGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQH----DEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 383 ~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
+..........|++ +|.++|+.+...++|+.++..+.+........ .....+...|...++..+++.++.+...
T Consensus 398 ~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~ 476 (489)
T PRK10207 398 ALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMV 476 (489)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66566555555555 99999999999999999998887655320000 0112356777777777776666655543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=237.45 Aligned_cols=331 Identities=16% Similarity=0.105 Sum_probs=241.9
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcc----cCcch-hHHHHHHHHHHHHHHHHhHhhh----HH-HHHHHHH
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKN----HDSHK-MLAYGMVVNAVFALLVPVSSQS----IW-CLAAVRF 137 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~~----~~-~l~~~r~ 137 (520)
+++|+++.++|++.++..+..++..|+.|+++|| +|||| .++.+....+++.+++.+.++. .. ++++.++
T Consensus 28 ~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (437)
T TIGR00792 28 DVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYI 107 (437)
T ss_pred HccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 7899999999999999999999999999999997 68855 5777888888888877665311 24 7788889
Q ss_pred HHhccccCchhhHHHHHhhhc-CCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcc----ccccCcchHHHHHHHHHHHHH
Q psy10491 138 IQGMGEGPIVPCTHAILAKWI-PPGERSFLGGIVYSGAQFGTIISYPVSGYLAYG----TFLQGWPAIFYVFGVICLIWC 212 (520)
Q Consensus 138 l~G~g~~~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~----~~~~gwr~~f~i~~~~~~~~~ 212 (520)
+.+++.+...++..++..|.. ++++|++..++.+.+..+|..+++.+.+.+... .+..+||+.+++.+++.++..
T Consensus 108 ~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~ 187 (437)
T TIGR00792 108 LLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSL 187 (437)
T ss_pred HHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHH
Confidence 999988888888889999987 468899999999999999888877766555431 112689999999999888877
Q ss_pred HHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy10491 213 VLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLK 292 (520)
Q Consensus 213 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (520)
++.++..||++++.+..+ + ++.+....+++++++|+++...+..++..........+.+.|.+
T Consensus 188 ~~~~~~~~e~~~~~~~~~--~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (437)
T TIGR00792 188 IICFFGTKERYSEIPKNI--E---------------KKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFT 250 (437)
T ss_pred HHHHcCCEecCCCCCccc--c---------------cCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEe
Confidence 777777777653211000 0 11111234567889999998888888877777776666777776
Q ss_pred hhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHH
Q psy10491 293 EVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLI 372 (520)
Q Consensus 293 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (520)
..++ ++...+.+.....++.+++.++.+++.||+|+|+.+ ..+..+..++.+...+.+++.+......+
T Consensus 251 ~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (437)
T TIGR00792 251 YVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILF----------AGGILLMVLGYLIFFFAGSNLPLILVLII 319 (437)
T ss_pred eecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH----------HHHHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 6555 455667777778899999999999999999998876 45555555554444443333333333333
Q ss_pred HHHHHhhccccccceeeccCC--------CCcchhHHHHHHHHHhhHHhHHHHHHHHhhccc
Q psy10491 373 LAMACNGGIYAGFKVNHIDIS--------PCFAGILMSITNCSANVVGMLAPTISGLLLNWF 426 (520)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~--------p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 426 (520)
+..+..+...+...+...+.. ++.+|.++|+.+.+..+|..+++.+.|.+.+..
T Consensus 320 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 320 LAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333444455555555543 234899999999999999999999999998843
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-26 Score=222.21 Aligned_cols=369 Identities=10% Similarity=-0.004 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHH--HHHHHHHHHHhhhhhhh-hhcccCcchhHHH
Q psy10491 34 TFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLL--LSSFFYGYVLTQIPIGL-LTKNHDSHKMLAY 110 (520)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~--~s~~~~~~~~~~~~~g~-l~Dr~Grr~~l~~ 110 (520)
...++..++.++.......+.+|.+. ++.|.+.+++|++ .+...+...+.+++++. ..||+||||..++
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l--------~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~ 74 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLL--------REDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVL 74 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHH
Confidence 44566677888888888888999998 7889999999997 46778888888888855 7999999999766
Q ss_pred HHHHH-HHHHHHHH-hHh-hhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhh
Q psy10491 111 GMVVN-AVFALLVP-VSS-QSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG 186 (520)
Q Consensus 111 ~~~~~-~~~~~~~~-~~~-~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~ 186 (520)
.+.+. ++.....+ +.. .+.. +++..-++.++..+...+...++..|..++++++...+....+..+|.++|+.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~ 154 (390)
T TIGR02718 75 PMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTL 154 (390)
T ss_pred HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55332 21222222 211 1223 55556666777777788888889999998888899999999999999999999999
Q ss_pred hhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhH
Q psy10491 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPF 266 (520)
Q Consensus 187 ~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (520)
++.+. .|||..|++.+++.++..+..++..|+++++.+ .+ +....+.++++|+|.+
T Consensus 155 ~l~~~---~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~-~~--------------------~~~~~~~~~~l~~~~~ 210 (390)
T TIGR02718 155 VLFGK---FGQRPAFLLVACVPLASLVCVLWLKDRAVASPE-AP--------------------LARRASLFRFFRRPLA 210 (390)
T ss_pred HHHHH---hCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccc-cc--------------------hhhHHHHHHHHcCcCH
Confidence 99887 899999999998887755554444333221111 00 0011235678888988
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHH-HHHHHHHHHHHHHHHHHhhccccccchhhhhhhh
Q psy10491 267 LSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYI-AMFITSSVLNYLADYFIRKKILSTGATRKLMTSI 345 (520)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 345 (520)
+......++..........+.+.|+++ .|+++.+.|.+....++ ..+++.++.|++.||+++|+.+. .
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~----------~ 279 (390)
T TIGR02718 211 WSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFI----------L 279 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHH----------H
Confidence 888888788877788888899999988 59999999999888765 56677899999999999998762 2
Q ss_pred hchhhhhhh-hhhh----ccCCChHHHHHHHHHHHHHhhccccccceee-ccCCC-CcchhHHHHHHHHHhhHHhHHHHH
Q psy10491 346 GEYGPGLMF-IIPV----ILGFTHTPTIVCLILAMACNGGIYAGFKVNH-IDISP-CFAGILMSITNCSANVVGMLAPTI 418 (520)
Q Consensus 346 ~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~ 418 (520)
+..+..+.. .... ..............+..+..+...+...... ....+ +.+|+.+++.+...++|..++|.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~ 359 (390)
T TIGR02718 280 GVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSI 359 (390)
T ss_pred HHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 222221111 1111 0111222222222333223333433333333 33444 559999999999999999999999
Q ss_pred HHHhhccccccccchhHHHHHHHHHHHHHHHHH
Q psy10491 419 SGLLLNWFQHDEMLSWKVVFLVSAVLYITCATV 451 (520)
Q Consensus 419 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (520)
.|.++| ..+++..|.+.+++.+++.+.
T Consensus 360 ~G~l~~------~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 360 AGYLTD------RFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHH------HHccHHHHHHHHHHHHHHHHH
Confidence 999999 568888888888777766544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=235.60 Aligned_cols=365 Identities=15% Similarity=0.143 Sum_probs=258.8
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~ 146 (520)
+.+..+.....+..+++.+|..+|++++|+++||+|||+++++++++..++.++.++++ ++ .+++.|+++|++.++.
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~--~~~~~~~~Rfl~G~~~~~~ 188 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP--NYWMFLIFRFLSGFFGSGP 188 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhhccch
Confidence 56677888999999999999999999999999999999999999999999999999998 88 9999999999999999
Q ss_pred hhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy10491 147 VPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSD 226 (520)
Q Consensus 147 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~ 226 (520)
......+++|++++++|+.+..+ ......+..++++.++++.. +||+.+++..++.++..++ +++.||+|++.
T Consensus 189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl 261 (521)
T KOG0255|consen 189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRWLFWIISIPSGLFLLL-WFLPPESPRWL 261 (521)
T ss_pred hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHH-HHccCcChHHH
Confidence 99999999999999999999999 77777777888888888765 7999999999999884444 66667999876
Q ss_pred CCCCh-HHHHHHHhhccC-----Ccc----------c---cccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHh
Q psy10491 227 KRVSV-EEKEYILYSIFG-----GDI----------I---EDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTML 287 (520)
Q Consensus 227 ~~~~~-~~~~~~~~~~~~-----~~~----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (520)
....+ ++..+..++..+ ... + ....+++..+.++++.|++....+...+..+.......-+
T Consensus 262 ~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl 341 (521)
T KOG0255|consen 262 LSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGL 341 (521)
T ss_pred HHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 43332 333333322210 000 0 0011122456778888765544444443333222222222
Q ss_pred HHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChH--
Q psy10491 288 PTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHT-- 365 (520)
Q Consensus 288 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 365 (520)
+..... +|.+. .......+..........+...|+.|||... ..+..+..++++...+......
T Consensus 342 ~~~~~~-lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 407 (521)
T KOG0255|consen 342 SLNVSG-LGGNI---YLNFTLSGLVELPAYFRNGLLLPEFGRRPPL----------FLSLFLAGIGLLLFGWLPDDLGGW 407 (521)
T ss_pred hhhhhh-cCchH---HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHH----------HHHHHHHHHHHHHHHHhhccchhH
Confidence 222222 34443 3334444556667777778999999888876 6777777778777777766544
Q ss_pred HHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHH
Q psy10491 366 PTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVL 444 (520)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 444 (520)
.......++.++..........+..|..|+. |+.+.+..+....++++++|.+.-.... ......+..++..
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-------~~~~~~~~~~~~~ 480 (521)
T KOG0255|consen 408 LHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-------MFPLLGLILFGWL 480 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hcccchHHHHHHH
Confidence 4555555666666666666688889999988 9999999999999999999998754433 1112222224444
Q ss_pred HHHHHHHH-HHhcCCCccc
Q psy10491 445 YITCATVY-LLFSSGRKQY 462 (520)
Q Consensus 445 ~~~~~~~~-~~~~~~~~~~ 462 (520)
..+..++. +++++++...
T Consensus 481 ~~l~~~~~~~~lpet~~~~ 499 (521)
T KOG0255|consen 481 ALLLGLLSLLLLPETKGKP 499 (521)
T ss_pred HHHHHHHHHhcCcccCCCC
Confidence 44444444 5566554433
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-26 Score=227.23 Aligned_cols=420 Identities=11% Similarity=-0.003 Sum_probs=288.3
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcc
Q psy10491 22 PKPKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKN 101 (520)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr 101 (520)
+.+.+..+||.++...+...... ...+.++...|.+. +++|+|..+++++.++. .....++++.|++.||
T Consensus 18 ~~~~~e~~Rw~~lva~~~~~~~~-g~~y~fsv~s~~L~--------~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr 87 (591)
T PTZ00207 18 QKPINEPRRFALLVLGAFCSICT-SFMYAFNLISGAMQ--------ARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDY 87 (591)
T ss_pred cccccccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--------HHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 33444456676665544444333 33345667778888 89999999999998874 4556778889999999
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhHhh----hHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHH
Q psy10491 102 HDSHKMLAYGMVVNAVFALLVPVSSQ----SIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQF 176 (520)
Q Consensus 102 ~Grr~~l~~~~~~~~~~~~~~~~~~~----~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~ 176 (520)
+|||++++++.+++++++++++++.+ .++ .+++.|++.|+|.+...+.....+.+|+| ++||+++|+...+.++
T Consensus 88 ~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gL 166 (591)
T PTZ00207 88 LGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGL 166 (591)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHH
Confidence 99999999999999999999999721 155 99999999999999999999999999995 7899999999999999
Q ss_pred HHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCC---C--CChHHHHHHH--hh---------
Q psy10491 177 GTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDK---R--VSVEEKEYIL--YS--------- 240 (520)
Q Consensus 177 G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~---~--~~~~~~~~~~--~~--------- 240 (520)
|.++.+.+...+.. .+|++.|++.++++++..++.+++++++|.... + .+++++.... +.
T Consensus 167 GsaI~~~l~~~l~~----~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~ 242 (591)
T PTZ00207 167 GSAILGSIQLAFFS----DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPM 242 (591)
T ss_pred HHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCc
Confidence 99865555544444 368999999999999988888888776653221 1 1222221000 00
Q ss_pred -----------------------------------------c------c---------C-C-cc-c--------------
Q psy10491 241 -----------------------------------------I------F---------G-G-DI-I-------------- 247 (520)
Q Consensus 241 -----------------------------------------~------~---------~-~-~~-~-------------- 247 (520)
. . + . .. .
T Consensus 243 ~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (591)
T PTZ00207 243 WRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEE 322 (591)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccccccccc
Confidence 0 0 0 0 00 0
Q ss_pred ----cc-------c---ccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcch--hHHHHHhHHH
Q psy10491 248 ----ED-------L---KASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIK--NGLISATPYI 311 (520)
Q Consensus 248 ----~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~--~~~~~~~~~~ 311 (520)
+. + .....++++.+++.++|.+.+..++.......+...+.++.+..-|.+... ...+.++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si 402 (591)
T PTZ00207 323 VSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGV 402 (591)
T ss_pred ccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhH
Confidence 00 0 000125666777889999999999988888888888998888853663322 2337888999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeecc
Q psy10491 312 AMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHID 391 (520)
Q Consensus 312 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (520)
++.+|++..|++.....+|+.-. ...|-..+.+..+ +.++.+++...... ....+..++.+++.+...+.......|
T Consensus 403 ~~~~GRl~~g~~~~~~~~~~~~~-r~prt~~l~~~~~-~~~~~lll~~~~p~-~~L~~~~~lvg~~~G~~~~~~~~i~se 479 (591)
T PTZ00207 403 GSAVGRLCMSYFEIWSQKRRAED-RVPITIALFIPSV-CIITMLTLFLTLPK-AALPLPYFIAAFANGFMAATIALVTRT 479 (591)
T ss_pred HHHhhHHHHHHHHHHHHhhcccc-ccchhHHHHHHHH-HHHHHHHHHHHCCc-cHhHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 99999999999884444443100 0012222334444 44444444333222 234444555556678888888888999
Q ss_pred CCCCcchhHHHHHHHHHhhHHhHH-HHHHHHhhcccccc-------ccchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10491 392 ISPCFAGILMSITNCSANVVGMLA-PTISGLLLNWFQHD-------EMLSWKVVFLVSAVLYITCATVYLLFSSGR 459 (520)
Q Consensus 392 ~~p~~~g~~~g~~~~~~~~g~~i~-~~~~g~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (520)
++.++-|+-.-+.....-+|..+- -.+.|.++|.-... ...=++.+|++.+++++++.+....+..+.
T Consensus 480 lFgk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~ 555 (591)
T PTZ00207 480 IFAKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY 555 (591)
T ss_pred HhccchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence 998778888888777777877665 66788888722100 123477899999999999888877665443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-31 Score=266.85 Aligned_cols=403 Identities=18% Similarity=0.200 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHhhhheeeeeccCCCCC---cccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHH
Q psy10491 38 FIGMANAYVMRTNMSVAIVAMTNPESS---IHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVV 114 (520)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~ 114 (520)
.++.+..++|...++...+........ .+..+.+.+..+.+++.+...+|..+|+++.|.++||+|||+.+.++.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 344567777776666655444411111 11111222456789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhh-HH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccc
Q psy10491 115 NAVFALLVPVSSQS-IW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGT 192 (520)
Q Consensus 115 ~~~~~~~~~~~~~~-~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~ 192 (520)
..+++++.++++.+ ++ .++++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++..+....
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 165 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS 165 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999322 45 99999999999999999999999999999999999999999999999999988876664432
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCh-HHHHHHHhhccCC-----cccc------ccccCccchhhh
Q psy10491 193 FLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSV-EEKEYILYSIFGG-----DIIE------DLKASSIPWGDI 260 (520)
Q Consensus 193 ~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~------~~~~~~~~~~~~ 260 (520)
+..+||+.+++.++++++ .++..+++||+|++...+++ ++.++..++..+. +.++ +.++.+..++++
T Consensus 166 ~~~~Wr~~~~~~~~~~l~-~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 244 (451)
T PF00083_consen 166 DNWGWRILLIFGAIPSLL-VLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDL 244 (451)
T ss_pred cccccccccccccccccc-ccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeec
Confidence 124699999998888877 45566789999998644332 2222222221110 0001 111112456777
Q ss_pred ccchh----HHHHHHHHHHH-HHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy10491 261 VKSGP----FLSILVAHMGQ-NFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILST 335 (520)
Q Consensus 261 ~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 335 (520)
++++. +.......... ..+......+.+.++++ .|.+.. -.......+...++.++..++.||+|||+.+.
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i- 320 (451)
T PF00083_consen 245 FRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLI- 320 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccc-cccccc--cccccccccccccccccccccccccccccccc-
Confidence 77643 22222222222 33334455566666665 476665 22334445666677777789999999998873
Q ss_pred cchhhhhhhhhchhhhhhhhhhh----ccCCC----hHHHHHH-HHHHHHHhhccccccceeeccCCCCc-chhHHHHHH
Q psy10491 336 GATRKLMTSIGEYGPGLMFIIPV----ILGFT----HTPTIVC-LILAMACNGGIYAGFKVNHIDISPCF-AGILMSITN 405 (520)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~ 405 (520)
.+..+..++...+. ...+. ....+.. .+...+......+....+..|++|.+ |+++.|+..
T Consensus 321 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~ 391 (451)
T PF00083_consen 321 ---------IGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSY 391 (451)
T ss_pred ---------cccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccc
Confidence 44444333333332 11222 1222222 22223333455666678889999988 999999999
Q ss_pred HHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHH-HhcCCCc
Q psy10491 406 CSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYL-LFSSGRK 460 (520)
Q Consensus 406 ~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 460 (520)
.++.+++++++.+...+.+ ..+....+.+.+++++++.+..+ +.++++.
T Consensus 392 ~~~~i~~~i~~~~~~~~~~------~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 392 AVGRIGGFIIPFLFPYLFN------NLGGWGVFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred ccccccccccccccccccc------cccccccchhhHHHHHHHHhheeEEEeeCCC
Confidence 9999999999999888887 33434455555555555554444 4444443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=201.82 Aligned_cols=378 Identities=17% Similarity=0.179 Sum_probs=266.7
Q ss_pred HHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCc-chhHHHHHHHHHHH
Q psy10491 40 GMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDS-HKMLAYGMVVNAVF 118 (520)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Gr-r~~l~~~~~~~~~~ 118 (520)
.+++.++....+.+..+... ++.|.|..|+|.+.++..+...++++++|.++||+++ ||.+.+..++.++.
T Consensus 10 ~~f~~f~~~G~~~p~~~~~L--------~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~ 81 (400)
T PF03825_consen 10 MYFLYFFAYGAFLPYLPLYL--------ESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALA 81 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHH
Confidence 34444444455556666666 7888999999999999999999999999999999865 66777777777666
Q ss_pred HHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhh-hhhhhccccccC
Q psy10491 119 ALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPV-SGYLAYGTFLQG 196 (520)
Q Consensus 119 ~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l-~~~l~~~~~~~g 196 (520)
.......+ ++ .+++.-++..+......|...++..+... +++.-.|-.....++|.+++... +..+....+..+
T Consensus 82 ~~~~~~~~--~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~ 157 (400)
T PF03825_consen 82 LLLLAFSS--SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISG 157 (400)
T ss_pred HHHHHHhc--cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhcccc
Confidence 65555553 55 77777888888888888999999888874 55666777788888888877554 233333211123
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHH
Q psy10491 197 WPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQ 276 (520)
Q Consensus 197 wr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (520)
..+.+++.+...++ .....+.+|+.|++++..+. .++....+..+++|+|+++...+..++.
T Consensus 158 ~~~~~~i~~~~~~l-l~~~~l~lp~~~~~~~~~~~-----------------~~~~~~~~~~~llk~~~~~~Fll~~~l~ 219 (400)
T PF03825_consen 158 TSLIFYIAAILSLL-LAGFALFLPKTPPKRSAKES-----------------VKKLLGLDALKLLKNPRFLVFLLAAFLI 219 (400)
T ss_pred ccHHHHHHHHHHHH-HHHHHHhCCCCccccccCCC-----------------cccccchHHHHHhcCccHHHHHHHHHHH
Confidence 34556666655544 33344567877632221110 1111122335789999999999999999
Q ss_pred HHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhh
Q psy10491 277 NFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFII 356 (520)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (520)
......+..+.+.|+++..|.+....+.+.++..++.++.-...+++.+|+|.++.+ .++.+..++=..+
T Consensus 220 ~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll----------~~a~~~~~vR~~l 289 (400)
T PF03825_consen 220 GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLL----------LLALVAYAVRWLL 289 (400)
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH----------HHHHHHHHHHHHH
Confidence 989999999999999997447878888888888899999999999999999999887 6777777777777
Q ss_pred hhccCCChHHHHHHHH----HHHHHhhccccccceeeccCCCCc-chhHHHHHHHH-HhhHHhHHHHHHHHhhccccccc
Q psy10491 357 PVILGFTHTPTIVCLI----LAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCS-ANVVGMLAPTISGLLLNWFQHDE 430 (520)
Q Consensus 357 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~-~~~g~~i~~~~~g~l~~~~~~~~ 430 (520)
+....++.+......+ .-+...+........+..+..|++ |+++.|+++.. ..+|..+|..++|+++|.++...
T Consensus 290 ~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~ 369 (400)
T PF03825_consen 290 YAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG 369 (400)
T ss_pred HHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh
Confidence 7766444333332222 234444556666667777777766 99999998876 56999999999999999554333
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 431 MLSWKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
...|...+.+.+++.++..++..++-|
T Consensus 370 ~~~~~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 370 MFDWSAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445566666666666666655555433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=211.36 Aligned_cols=376 Identities=15% Similarity=0.076 Sum_probs=230.9
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcc-cCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccC
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKN-HDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGP 145 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~ 145 (520)
+++|++.++.+++.+.+........+++|+++|| +|||+++.++.++.+++.+++++++ +.+ .++++|+++|+|.|.
T Consensus 50 ~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~-~~~~~l~~~~~l~gig~g~ 128 (500)
T PRK09584 50 KQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG-HDAGIVYMGMATIAVGNGL 128 (500)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhhhc
Confidence 7899999999999988887767777899999999 5999999999999999999998873 345 778899999999999
Q ss_pred chhhHHHHHhhhcCCCc--chhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHH---HHHHHhh
Q psy10491 146 IVPCTHAILAKWIPPGE--RSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCV---LFIFLVY 220 (520)
Q Consensus 146 ~~~~~~~~i~~~~~~~~--rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~---~~~~~~~ 220 (520)
..+...+++.|++|+++ |+.++++++.+.++|..+||.+++++.++ .|||+.|++.++..++..+ .....++
T Consensus 129 ~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~---~g~~~~F~i~~i~~~i~~i~~~~~~~~~~ 205 (500)
T PRK09584 129 FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK---YGWSVAFALSVVGMLITVVNFAFCQRWVK 205 (500)
T ss_pred ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 89999999999997654 45688999999999999999999999987 8999999998764444222 2233344
Q ss_pred cCCCCCCCCChHHHHHHH------------hh-ccCCcccc------------ccccCccchhhhccchhHHHHHHHHHH
Q psy10491 221 ENPHSDKRVSVEEKEYIL------------YS-IFGGDIIE------------DLKASSIPWGDIVKSGPFLSILVAHMG 275 (520)
Q Consensus 221 e~~~~~~~~~~~~~~~~~------------~~-~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (520)
|.++...+.+.+...... .. ..+..... ..........+.- +++.+..+. .++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~ 283 (500)
T PRK09584 206 QYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAA-RRKMIVAFI-LML 283 (500)
T ss_pred cCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHH-HHHHHHHHH-HHH
Confidence 432111111111110000 00 00000000 0000000001111 122222222 223
Q ss_pred HHHHHHHHHHHhHHHHHh--hcCCCc------chhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhc
Q psy10491 276 QNFGYETLMTMLPTFLKE--VLHFDM------IKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGE 347 (520)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~--~~g~s~------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 347 (520)
....++......+.++.. ..+.+. ...+++.+...+..++..++.+++.+|.++|.... ....+++
T Consensus 284 ~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~------~~~~~G~ 357 (500)
T PRK09584 284 EAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMP------HKFAIGM 357 (500)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcH------HHHHHHH
Confidence 333333444444444332 111111 22566777788788888888877777777663211 1135677
Q ss_pred hhhhhhhhhhhccCC--------ChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHH
Q psy10491 348 YGPGLMFIIPVILGF--------THTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTI 418 (520)
Q Consensus 348 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~ 418 (520)
++.+++++.+..... +.++.+...++.........|....+..+..|++ ||+++|+......+|..++..+
T Consensus 358 ~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~ 437 (500)
T PRK09584 358 VLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYV 437 (500)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666543322 1234444555555556777777777787777776 9999998776666666666666
Q ss_pred HHHhhccc---cc-cccchhHHHHHHHHHHHHHHHHHHHHh
Q psy10491 419 SGLLLNWF---QH-DEMLSWKVVFLVSAVLYITCATVYLLF 455 (520)
Q Consensus 419 ~g~l~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (520)
.+...... +. ....++...|...++..++..++.+..
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~ 478 (500)
T PRK09584 438 ANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLT 478 (500)
T ss_pred HHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 54322100 00 011247788888887766555544443
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-25 Score=192.33 Aligned_cols=400 Identities=14% Similarity=0.142 Sum_probs=272.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcc-c
Q psy10491 24 PKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKN-H 102 (520)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr-~ 102 (520)
|....+|...++.+|+..|-+++.....+....+.. .+.+++.++..++.++|.....+...+.|++.|| +
T Consensus 36 PS~l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk--------~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~f 107 (459)
T KOG4686|consen 36 PSALGHRFMALVFMCLLGFGSYFCYDAPGALQIDFK--------LDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRF 107 (459)
T ss_pred chhhhhHHHHHHHHHHhcccceeecCCchhhhhhhh--------cccccceeeeeeeeeeccCCCEEEeeecceeehhhh
Confidence 344456667777777777778887777777777766 7899999999999999999999999999999996 7
Q ss_pred CcchhHHHHHHHHHHHHHHHHhHh-hhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHH
Q psy10491 103 DSHKMLAYGMVVNAVFALLVPVSS-QSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTII 180 (520)
Q Consensus 103 Grr~~l~~~~~~~~~~~~~~~~~~-~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~ 180 (520)
|-|..-++-+.+..+|.++++.-. .+.+ +++++|++.|+|.-...++...+..-|+..|+.+.++|+.....-+|..+
T Consensus 108 gir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gstv 187 (459)
T KOG4686|consen 108 GIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTV 187 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhcee
Confidence 888876666666677777765432 1244 99999999999988888999999999999999999999999999999988
Q ss_pred hhhhhhhhhccccc-c-Cc-ch---HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCc
Q psy10491 181 SYPVSGYLAYGTFL-Q-GW-PA---IFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASS 254 (520)
Q Consensus 181 g~~l~~~l~~~~~~-~-gw-r~---~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (520)
--.+.+++.+..+. . |- +. ..+..+.......+.....+--. ++..+.+....+ ....+.
T Consensus 188 Nf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~--------D~rAerilh~e~------g~~Ge~ 253 (459)
T KOG4686|consen 188 NFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLS--------DDRAERILHLEE------GFLGEE 253 (459)
T ss_pred eeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hhHHHHHHhhhc------CcccCC
Confidence 77777777664110 0 00 00 01111111111111111111000 001111111110 011111
Q ss_pred cchhhhc-cchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy10491 255 IPWGDIV-KSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKIL 333 (520)
Q Consensus 255 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 333 (520)
....++. -.|++|.+.+.+++...+.+.+....|.++++++|+|+..++.+.+.......+.+++.|.++||.|++-..
T Consensus 254 pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~w 333 (459)
T KOG4686|consen 254 PKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWW 333 (459)
T ss_pred cccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehh
Confidence 1111221 247899999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred cccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHH
Q psy10491 334 STGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVG 412 (520)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~ 412 (520)
. ..+.+....+-..+.++..+++.. +.+++... .......+..+..+.|++ .|++.|.++..+++|-
T Consensus 334 v---------~~a~~~tl~~H~~l~Ft~lsPy~~--m~~lGLsy-sllAcslWP~va~~vpE~qLGTaygf~qsIqNLgl 401 (459)
T KOG4686|consen 334 V---------ASACILTLLGHSGLFFTFLSPYTS--MTFLGLSY-SLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGL 401 (459)
T ss_pred H---------HHHHHHHHHHhhhHHhhhccHHHH--HHHHhhhH-HHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhh
Confidence 2 333444444444444443333332 33333322 222333344455566666 9999999999999999
Q ss_pred hHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10491 413 MLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGR 459 (520)
Q Consensus 413 ~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (520)
++.|.+.|.+.| ++......+..|...+.+++.+..+.+.+.++.
T Consensus 402 a~i~Iiag~i~d--~~g~y~~le~ffl~~~~~aL~svgil~~~N~kq 446 (459)
T KOG4686|consen 402 AFIPIIAGFIAD--GDGSYDNLEAFFLIIGLMALTSVGILFYLNKKQ 446 (459)
T ss_pred hHHhhhhheeec--CCCchhhHHHHHHHHHHHHHHHHHHHhheeccc
Confidence 999999999999 333334445556666666666666666555443
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=188.96 Aligned_cols=400 Identities=14% Similarity=0.088 Sum_probs=289.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCc
Q psy10491 25 KGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDS 104 (520)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Gr 104 (520)
+..++||.++++..+..+.+.+....++++..... .-|+ +.+..-|+.-+|++.+....+++-|+.|++|-
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~--------~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GL 108 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVN--------SFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGL 108 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHH--------HHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccch
Confidence 34567888888888888888888888888776666 5677 77788899999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhHhhh-----HH--HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHH
Q psy10491 105 HKMLAYGMVVNAVFALLVPVSSQS-----IW--CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFG 177 (520)
Q Consensus 105 r~~l~~~~~~~~~~~~~~~~~~~~-----~~--~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G 177 (520)
|...+++..+.++|+.+-..+... .+ ....+..+.+..+-.....-..+..-||++++|..+..+-.++..+|
T Consensus 109 R~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LG 188 (480)
T KOG2563|consen 109 RTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLG 188 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHH
Confidence 999999999999999998877422 23 67788999999888777777788999999999999999999999999
Q ss_pred HHHhhhhhhhhhccc---cccCcch--HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCcccccccc
Q psy10491 178 TIISYPVSGYLAYGT---FLQGWPA--IFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKA 252 (520)
Q Consensus 178 ~~~g~~l~~~l~~~~---~~~gwr~--~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (520)
.++|.++...+..+. ++..|-. .|+..+.+..+..++..+..+++|+.+........ .+..
T Consensus 189 vavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~--------------~~~~ 254 (480)
T KOG2563|consen 189 VAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL--------------QDAS 254 (480)
T ss_pred HHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh--------------hcCc
Confidence 999999999888764 2345654 35545555554445555555555543332211111 1123
Q ss_pred CccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10491 253 SSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKI 332 (520)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~ 332 (520)
...+.+++++++++..+++.+.+....+++..+.+..-+... |++...+|++.....+++++++.+.|.+.||.+..+.
T Consensus 255 f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~s-gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~ 333 (480)
T KOG2563|consen 255 FPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPS-GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKL 333 (480)
T ss_pred HHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccc-cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 456778899999999999999888888888888777666664 8888899999999999999999999999999887665
Q ss_pred ccccchhhhhhhhhchhhhhh-hhhh--hccCCCh-HHHHHHHHHHHHHhhccccccceeec-cCCCCcchhHHHHHHHH
Q psy10491 333 LSTGATRKLMTSIGEYGPGLM-FIIP--VILGFTH-TPTIVCLILAMACNGGIYAGFKVNHI-DISPCFAGILMSITNCS 407 (520)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~g~~~g~~~~~ 407 (520)
.. .+......++ +.+. ....... .+...+.+++.++ ....|+..-+.. ..+|..-++..|+.+..
T Consensus 334 ~~---------~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~-~~~~Pig~ElgvE~TyPv~E~tSsGll~~~ 403 (480)
T KOG2563|consen 334 TT---------LVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFG-TGYLPIGFELGVETTYPVAEGTSSGLLNLS 403 (480)
T ss_pred HH---------HHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhh-cCCCCcceeeeeeeccccCCcccceeEEee
Confidence 42 2222222222 1111 1112222 3444445555544 445555555544 56788889999999999
Q ss_pred HhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy10491 408 ANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRK 460 (520)
Q Consensus 408 ~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (520)
+++-+.+-..+.+...+.. ....++...-+.....+++..++..++++..+
T Consensus 404 gq~f~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~ 454 (480)
T KOG2563|consen 404 GQIFGVILVFIMGILAEDL--GPPGNTFPANIFLTVSALLGAILVAFFRPDYR 454 (480)
T ss_pred hhHHHHHHHHHHHHHhhcc--CCCCCCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence 9999999999999888811 11111444445555555555555555554433
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=192.82 Aligned_cols=366 Identities=12% Similarity=0.071 Sum_probs=243.1
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhc----ccCcchhHHHH-HHHHHHHHHHHHhHhhh-------------H
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTK----NHDSHKMLAYG-MVVNAVFALLVPVSSQS-------------I 129 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~D----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~-------------~ 129 (520)
+++|.+..+.+++..+..+...+.+|+.|+++| |+||||.++++ .....++.++.+++++- .
T Consensus 32 ~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~ 111 (477)
T TIGR01301 32 QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKP 111 (477)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchh
Confidence 689999999999999999999999999999999 59999997774 66666666777665310 0
Q ss_pred ---HHHHHHHHHHhccccCchhhHHHHHhhhcCCCcc--hhHHHHHHHHhHHHHHHhhhhhhhhh--ccc--------c-
Q psy10491 130 ---WCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGER--SFLGGIVYSGAQFGTIISYPVSGYLA--YGT--------F- 193 (520)
Q Consensus 130 ---~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r--g~~~~~~~~~~~~G~~~g~~l~~~l~--~~~--------~- 193 (520)
+.++++-.+..++.....++..++++|.+|+++| +.+.++.+.+.++|.++|+.++++.. +.. +
T Consensus 112 ~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~ 191 (477)
T TIGR01301 112 RAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGV 191 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccc
Confidence 1223333344457777788899999999998865 68999999999999999999998752 110 0
Q ss_pred -ccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccc-----hhHH
Q psy10491 194 -LQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKS-----GPFL 267 (520)
Q Consensus 194 -~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 267 (520)
-.+.|+.|++.+++.++..++..+..+|.|....+...+++ .++ +++......+++++++ |.++
T Consensus 192 ~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~i~~~~~~mP~~m~ 261 (477)
T TIGR01301 192 SCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE------AAP----PSKHGEEAFFGELFGAFKYLPRPVW 261 (477)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh------ccc----ccccchhhhHHHHHHHHHHCCHHHH
Confidence 02678999999988888888888889997643221110000 000 0111111223333332 5688
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHh-hcCCCcch----------hHHHHHhHHHHHHHHHHHHHHHHHHHHh-hccccc
Q psy10491 268 SILVAHMGQNFGYETLMTMLPTFLKE-VLHFDMIK----------NGLISATPYIAMFITSSVLNYLADYFIR-KKILST 335 (520)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~----------~~~~~~~~~~~~~~~~~~~g~l~dr~g~-~~~~~~ 335 (520)
.+++..++.+++++.+..|.+.|..+ .++-++.. ..+......+...+.+++..++.+|+|+ |+..
T Consensus 262 ~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~-- 339 (477)
T TIGR01301 262 ILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLW-- 339 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH--
Confidence 99999999999999999999998874 55543321 1223444455556667778888999985 4443
Q ss_pred cchhhhhhhhhchhhhhhhhhhhccCC------C--------------hHHHHHHHHHHHHHhhccccccceeeccCCC-
Q psy10491 336 GATRKLMTSIGEYGPGLMFIIPVILGF------T--------------HTPTIVCLILAMACNGGIYAGFKVNHIDISP- 394 (520)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p- 394 (520)
.++.++.++++....+... . .+..+..+...+...+......+++..+..+
T Consensus 340 --------~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~ 411 (477)
T TIGR01301 340 --------GIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSN 411 (477)
T ss_pred --------HHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccc
Confidence 3454444444444432221 0 1223333333333334444444455544444
Q ss_pred --CcchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 395 --CFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 395 --~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
++.|..+|+.|.+..+.+.+.....|.+.+.+ ..+...++.+.++.++++.+..++..+
T Consensus 412 ~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~----g~~~~~~~~~~gv~~~~aa~~~~~~~~ 472 (477)
T TIGR01301 412 LGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLF----GGGNLPAFVVGAVAAFVSGLLALILLP 472 (477)
T ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHc----CCCCeeHHHHHHHHHHHHHHHHHHhCC
Confidence 34799999999999999999999888866633 224466788888888888877766544
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=190.75 Aligned_cols=375 Identities=11% Similarity=0.072 Sum_probs=249.7
Q ss_pred HHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHH--HH
Q psy10491 41 MANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNA--VF 118 (520)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~--~~ 118 (520)
++..++.....-+..|...+ +..|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++..+.+.. .+
T Consensus 16 ~f~~Ff~~gi~~pF~~iWL~-------~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~ 88 (412)
T PF01306_consen 16 YFFYFFIWGIFLPFFPIWLT-------QVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFG 88 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHc-------cccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence 33333444444454555451 4589999999999999999999999999999999998876554433222 22
Q ss_pred H-HHHHhHh---hhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcccc
Q psy10491 119 A-LLVPVSS---QSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTF 193 (520)
Q Consensus 119 ~-~~~~~~~---~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~ 193 (520)
. +...+.+ .|.+ ..+++-+..|+......|+.-+++.++. ++.+.-.|-..++.++|.+++..++|.+.+.
T Consensus 89 pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i-- 164 (412)
T PF01306_consen 89 PFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI-- 164 (412)
T ss_dssp HHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee--
Confidence 2 2222332 1233 4445555556666666777777776664 5567778888999999999999999999874
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHH
Q psy10491 194 LQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAH 273 (520)
Q Consensus 194 ~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (520)
+-+..||+....+++..++.++..|+.++.....+.++.+ +++.......+++|+|++|.+.+..
T Consensus 165 --~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~k~~~fw~~~l~v 229 (412)
T PF01306_consen 165 --NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAK-------------KDKVSLKDVLSLFKMRNFWFFVLFV 229 (412)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS-------------------HHHHHHHTTSHHHHHHHHHH
T ss_pred --CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccC-------------CCCCcHHHHHHHhcchhHHHHHHHH
Confidence 5578888877766665555454444444332211110000 1111123356889999999999888
Q ss_pred HHHHHHHHHHHHHhHHHHHhhc---CCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhh
Q psy10491 274 MGQNFGYETLMTMLPTFLKEVL---HFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGP 350 (520)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 350 (520)
......+..+....+.|+...+ +.+....|++.+...+..++...+.+++.+|+|.|+.+ .++..++
T Consensus 230 ~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~L----------llag~i~ 299 (412)
T PF01306_consen 230 IGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLL----------LLAGVIM 299 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHH----------HHHHHHH
Confidence 8888888888777888777643 33445678889999999999999999999999999987 5666666
Q ss_pred hhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHH-HHHHhhHHhHHHHHHHHhhccccc
Q psy10491 351 GLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSIT-NCSANVVGMLAPTISGLLLNWFQH 428 (520)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~-~~~~~~g~~i~~~~~g~l~~~~~~ 428 (520)
.+=....++.++.. .....-.+-..-.........-++.+.+|++ .++...+. +...+++.++.+.+.|.++|
T Consensus 300 ~iRi~~~~~~~~~~-~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd---- 374 (412)
T PF01306_consen 300 AIRIIGSGFATNPW-VISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD---- 374 (412)
T ss_dssp HHHHHHHHT--SHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHhhhcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh----
Confidence 67777766665443 4444444444444445555556667777777 78888885 67788999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy10491 429 DEMLSWKVVFLVSAVLYITCATVYLLFSSG 458 (520)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (520)
+.|++.+|++.+.+.+...++..+..++
T Consensus 375 --~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 375 --RIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred --hcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 7899999999888877777766665443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=201.68 Aligned_cols=368 Identities=11% Similarity=0.018 Sum_probs=234.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccC-----cch
Q psy10491 32 WTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHD-----SHK 106 (520)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~G-----rr~ 106 (520)
..+.++...++..+..........|.+. +++|++.++++...+...+...+-.+ +|+++||++ ||+
T Consensus 26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~--------~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~ 96 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIAGLMRLPLSPMLT--------DDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRW 96 (468)
T ss_pred hHHHHHHHHHHHhhHHHHhhhhhhHHHH--------HhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchH
Confidence 3444555567777777333334444444 78999999999999999999999666 999999998 777
Q ss_pred hHHHHHHHHH-HHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhH---HHHHHHHhHHHHHHh
Q psy10491 107 MLAYGMVVNA-VFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFL---GGIVYSGAQFGTIIS 181 (520)
Q Consensus 107 ~l~~~~~~~~-~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~---~~~~~~~~~~G~~~g 181 (520)
.++++.++.. ++....+..+ +.. ...+..++.+++.+...++.-++..|..+ +++... .++.....++|.++|
T Consensus 97 ~l~~~~~l~~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg 174 (468)
T TIGR00788 97 YLVLSGLLGSAILYGLLPGKV-SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLIS 174 (468)
T ss_pred HHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHH
Confidence 7777776663 4433333332 234 55558999999999999999999999997 555443 334444456899999
Q ss_pred hhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhc
Q psy10491 182 YPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIV 261 (520)
Q Consensus 182 ~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (520)
+.+++.+.+. .+||..|++.+.+.++. .+..++++|++....+...++......... ....+..++.....++.+
T Consensus 175 ~~l~G~l~~~---~~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l 249 (468)
T TIGR00788 175 SLLGGPLLDK---TLTRILFLITAALLLLQ-LFVSNLSKERRAFVRPRIGTYLEMNMALLT-LGVLANVKVQILGLRGAI 249 (468)
T ss_pred HHHHHHHHHh---cCcchHHHHHHHHHHHH-HHHHHhcccccccccccccccchhhhhhhh-hhHHHHHHHHHHHHHHHH
Confidence 9999999987 79999999998888775 555667788642111110000000000000 000000011112344557
Q ss_pred cchhHHHHHHHHHH-HHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhh
Q psy10491 262 KSGPFLSILVAHMG-QNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRK 340 (520)
Q Consensus 262 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 340 (520)
++|.++...+..++ ..........+. .+.++..|+++.+.|.+....+++.+++..+.+++.+|++.|+.+
T Consensus 250 ~~~~i~~~l~fifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l------- 321 (468)
T TIGR00788 250 QLLEIAKPLIFIFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLF------- 321 (468)
T ss_pred hcHHHHHHHHHHHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHH-------
Confidence 77887765555544 221111111110 122345799999999999999999999999999999999988876
Q ss_pred hhhhhhchhhhhhhhhhhcc---------CCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhh
Q psy10491 341 LMTSIGEYGPGLMFIIPVIL---------GFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANV 410 (520)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~ 410 (520)
.++.++..++....... ..+.+......++.....+........+..+..|++ +|+..++.+.+.++
T Consensus 322 ---~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~l 398 (468)
T TIGR00788 322 ---GVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHL 398 (468)
T ss_pred ---HHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHH
Confidence 34444444433221100 011222222222222333344444455556665555 99999999999999
Q ss_pred HHhHHHHHHHHhhccc
Q psy10491 411 VGMLAPTISGLLLNWF 426 (520)
Q Consensus 411 g~~i~~~~~g~l~~~~ 426 (520)
|..+++.++|.+.++.
T Consensus 399 g~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 399 GSSVSGFLGVLLMETI 414 (468)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999999854
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-21 Score=190.93 Aligned_cols=359 Identities=15% Similarity=0.116 Sum_probs=268.3
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHH-HHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHH
Q psy10491 74 TVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLA-YGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTH 151 (520)
Q Consensus 74 ~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~-~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~ 151 (520)
.+..++..++..+..++..|+.|.++|+-|+||.++ +...+..+.+.+..+..++.| ...+.-++.-++.+.......
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999887654 455566667777777655567 777777777788888899999
Q ss_pred HHHhhhcCCCcc--------------------------hhHHHHHHHHhHHHHHHhhhhhhhhhcccc-----ccCcchH
Q psy10491 152 AILAKWIPPGER--------------------------SFLGGIVYSGAQFGTIISYPVSGYLAYGTF-----LQGWPAI 200 (520)
Q Consensus 152 ~~i~~~~~~~~r--------------------------g~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-----~~gwr~~ 200 (520)
+++.|..+++++ ++..+.-.....+|.++.-.+.-.+....+ ..+-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999999988 999999888888998887777655543211 1345899
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCC-CCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHH
Q psy10491 201 FYVFGVICLIWCVLFIFLVYENPHSDK-RVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFG 279 (520)
Q Consensus 201 f~i~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (520)
+.+.++.-++..+..++++||.|+... +...+.... .-++-...++++.|.|.+...++.+++..-+
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~------------g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg 296 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRF------------GFKRLWRTFKEIRKLRQLFLFLIAYFLYSDG 296 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHH------------HHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 999999988989999999999876322 111111110 1122234556777889999999999999999
Q ss_pred HHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhh--ccccccchhhhhhhhhchhh-hhhhhh
Q psy10491 280 YETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRK--KILSTGATRKLMTSIGEYGP-GLMFII 356 (520)
Q Consensus 280 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~ 356 (520)
...+......|.++.+|++..+...+.....+.+++|+++.|++.||+|.| +.+. ++.++. .+....
T Consensus 297 ~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~----------~~l~~~~~i~~~g 366 (477)
T PF11700_consen 297 VNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLL----------ISLILWIIIPLYG 366 (477)
T ss_pred HHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH----------HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 5542 222222 111111
Q ss_pred hh------ccCCChHHHHHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHHhHHHHHHHHhhcccccc
Q psy10491 357 PV------ILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVGMLAPTISGLLLNWFQHD 429 (520)
Q Consensus 357 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~ 429 (520)
+. ....+.+.+.+..++.+.+.+...+..-++..++.|+ +.+..+|++.......+.+||.+.|.+.+.
T Consensus 367 ~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~---- 442 (477)
T PF11700_consen 367 LFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDA---- 442 (477)
T ss_pred HHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 11 1122334444444444445566666666666666555 499999999999999999999999999992
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10491 430 EMLSWKVVFLVSAVLYITCATVYLLFSSGR 459 (520)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (520)
..+.+..+....++.+++.++.+....++
T Consensus 443 -tg~~r~g~~~l~~lf~~gl~ll~~v~~~~ 471 (477)
T PF11700_consen 443 -TGSQRYGFLFLLVLFLIGLILLFFVDVEK 471 (477)
T ss_pred -hCCchhHHHHHHHHHHHHHHHHhhccchh
Confidence 34688899999999999988887665544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-22 Score=198.41 Aligned_cols=328 Identities=14% Similarity=0.044 Sum_probs=221.3
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcc----cCcchh-HHHHHHHHHHHHHHHHhHh----hhHH-HHHHHHH
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKN----HDSHKM-LAYGMVVNAVFALLVPVSS----QSIW-CLAAVRF 137 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr----~Grr~~-l~~~~~~~~~~~~~~~~~~----~~~~-~l~~~r~ 137 (520)
+++|++..++|++.++..+..++..|+.|+++|| +||||. ++.+.+..+++.++....+ ...+ ++++..+
T Consensus 38 ~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~ 117 (444)
T PRK09669 38 DVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYI 117 (444)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 7899999999999999999999999999999998 888554 5567777777665544442 1124 6666677
Q ss_pred HHhccccCchhhHHHHHhhhc-CCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcc----ccccCcchHHHHHHHHHHHHH
Q psy10491 138 IQGMGEGPIVPCTHAILAKWI-PPGERSFLGGIVYSGAQFGTIISYPVSGYLAYG----TFLQGWPAIFYVFGVICLIWC 212 (520)
Q Consensus 138 l~G~g~~~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~----~~~~gwr~~f~i~~~~~~~~~ 212 (520)
+.+.+.+....+..++.+|+. ++++|++..++...+..+|..+++.+...+... ....+|+..+.+.+++.++..
T Consensus 118 l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~ 197 (444)
T PRK09669 118 LLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLF 197 (444)
T ss_pred HHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 777766777777889999998 457899998988888888887777655443322 112578988888888877766
Q ss_pred HHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy10491 213 VLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLK 292 (520)
Q Consensus 213 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (520)
++.++..+|.++..++ ++.+.....+.++|||+++.+++..++............+.|.+
T Consensus 198 ~~~~~~~~e~~~~~~~--------------------~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~ 257 (444)
T PRK09669 198 FCCFFMTKERYTPEVD--------------------NSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVN 257 (444)
T ss_pred HHHhCCeEEecCCCCc--------------------CCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeee
Confidence 6666666664322110 11112345677889999988887777666666555454444444
Q ss_pred hhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhh-hhhccCCChHHHHHHH
Q psy10491 293 EVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFI-IPVILGFTHTPTIVCL 371 (520)
Q Consensus 293 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 371 (520)
...+ ++...+.+.....+..+++.++.+++.||+|+|+.. ..+..+..+... .....+++.+...+..
T Consensus 258 ~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (444)
T PRK09669 258 YVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAF----------KWTIVAFVILSALIFFIPPSNVWLIFALN 326 (444)
T ss_pred eecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH----------HHHHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 4433 233344455556677788888999999999999876 233333322222 2222233333334434
Q ss_pred HHHHHHhhccccccceeeccCCC-------C-cchhHHHHHHHHHhhHHhHHHHHHHHhhccc
Q psy10491 372 ILAMACNGGIYAGFKVNHIDISP-------C-FAGILMSITNCSANVVGMLAPTISGLLLNWF 426 (520)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~p-------~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 426 (520)
++.+...+...+...+...|+.+ + ..|..+|..+.+..+|.++++.+.|.+.+..
T Consensus 327 ~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 327 ILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444445555666666666653 2 2567889999999999999999999998854
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=192.75 Aligned_cols=330 Identities=19% Similarity=0.209 Sum_probs=257.9
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhc----ccCcchh-HHHHHHHHHHHHHHHHhHhh------hHH-HHHHH
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTK----NHDSHKM-LAYGMVVNAVFALLVPVSSQ------SIW-CLAAV 135 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~D----r~Grr~~-l~~~~~~~~~~~~~~~~~~~------~~~-~l~~~ 135 (520)
+.+|+++...|++..+..+..++..|+.|.++| |+||||. ++++....+++.+++...++ ... ++.+.
T Consensus 30 ~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~ 109 (428)
T PF13347_consen 30 DVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVF 109 (428)
T ss_pred HHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHH
Confidence 678999999999999999999999999999999 8998776 55787888887777765511 123 56777
Q ss_pred HHHHhccccCchhhHHHHHhhhcC-CCcchhHHHHHHHHhHHHHHHhhhhhhhhhcccc---cc-CcchHHHHHHHHHHH
Q psy10491 136 RFIQGMGEGPIVPCTHAILAKWIP-PGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTF---LQ-GWPAIFYVFGVICLI 210 (520)
Q Consensus 136 r~l~G~g~~~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~---~~-gwr~~f~i~~~~~~~ 210 (520)
-++..++......+..++..|..+ +++|.+..+.-..+..+|.++...+.+.+.+..+ .. +|++..++.+++.++
T Consensus 110 ~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v 189 (428)
T PF13347_consen 110 YILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLV 189 (428)
T ss_pred HHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHH
Confidence 777799999999999999999997 5789999999999999999777777666664311 11 799999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy10491 211 WCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTF 290 (520)
Q Consensus 211 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (520)
..++..+..+|.+++..+. +++.+.+..++++++||+++.+.+..++...+........+.|
T Consensus 190 ~~~i~~~~~ke~~~~~~~~------------------~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~ 251 (428)
T PF13347_consen 190 FFLITFFFVKERSVEVTEQ------------------EKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYY 251 (428)
T ss_pred Hhhhhhheeeecccccccc------------------ccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 8888888888822111110 0233345567889999999999999999888888888888999
Q ss_pred HHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccC-CChHHHHH
Q psy10491 291 LKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILG-FTHTPTIV 369 (520)
Q Consensus 291 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 369 (520)
.++..|.+ ...+.+.....++.+++.++.++++||+|+|+.. ..+..+..++.+...+.+ ++.+...+
T Consensus 252 ~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i 320 (428)
T PF13347_consen 252 FTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVY----------IIGLLLAALGFLLLFFLGPGSPWLVLI 320 (428)
T ss_pred HHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeeh----------hhhHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 98887776 5567777888999999999999999999999987 566666666666666555 44455555
Q ss_pred HHHHHHHHhhccccccceeeccCCC--------CcchhHHHHHHHHHhhHHhHHHHHHHHhhccc
Q psy10491 370 CLILAMACNGGIYAGFKVNHIDISP--------CFAGILMSITNCSANVVGMLAPTISGLLLNWF 426 (520)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~p--------~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 426 (520)
...+.+...+.......+...|+.+ ++.|...|+.+....++..+++.+.|.+.+..
T Consensus 321 ~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~ 385 (428)
T PF13347_consen 321 LFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV 385 (428)
T ss_pred HHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 5555555556666777777777654 23689999999999999999999999988744
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-22 Score=200.02 Aligned_cols=333 Identities=13% Similarity=0.037 Sum_probs=222.7
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhc----ccCcc-hhHHHHHHHHHHHHHHHHhHh---hh-HH-HHHHHHH
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTK----NHDSH-KMLAYGMVVNAVFALLVPVSS---QS-IW-CLAAVRF 137 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~D----r~Grr-~~l~~~~~~~~~~~~~~~~~~---~~-~~-~l~~~r~ 137 (520)
+.+|++..++|.+..+..+.-++..|++|.++| |+||| +.++++.+..+++.++.-..+ .+ .+ ++++.-+
T Consensus 35 ~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~ 114 (473)
T PRK10429 35 DVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYI 114 (473)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 678999999999999999999999999999999 66995 556677777777765553321 11 24 5666677
Q ss_pred HHhccccCchhhHHHHHhhhc-CCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcc----ccccCcchHHHHHHHHHHHHH
Q psy10491 138 IQGMGEGPIVPCTHAILAKWI-PPGERSFLGGIVYSGAQFGTIISYPVSGYLAYG----TFLQGWPAIFYVFGVICLIWC 212 (520)
Q Consensus 138 l~G~g~~~~~~~~~~~i~~~~-~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~----~~~~gwr~~f~i~~~~~~~~~ 212 (520)
+.+++.....++..++..|.. ++++|.+..++-..+.++|..+.+.+...+.+. ....+|+....+.+++.++..
T Consensus 115 l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~ 194 (473)
T PRK10429 115 LWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVST 194 (473)
T ss_pred HHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 778888888888999999999 588999999987777777766665554433221 111367877777777777656
Q ss_pred HHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy10491 213 VLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLK 292 (520)
Q Consensus 213 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (520)
++.++..||.+........++ ++.+.+..++.+++||+++.+++..++..........+.+.|.+
T Consensus 195 ~~~~~~~~e~~~~~~~~~~~~---------------~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~ 259 (473)
T PRK10429 195 IITLRNVHEVYSSDNQVSAEG---------------SHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFT 259 (473)
T ss_pred HHHHcCceecCCccccccccc---------------cCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEE
Confidence 666666677542211000000 11112234456678999888888888877777777677776666
Q ss_pred hhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhh---cc-CCChHHHH
Q psy10491 293 EVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPV---IL-GFTHTPTI 368 (520)
Q Consensus 293 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~ 368 (520)
...+ +....+.+.....++.+++.++.+++.||+|+|+.+. ++..+..++.+... +. +++.+..+
T Consensus 260 y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
T PRK10429 260 YVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWA----------GASIFPVLSCGVLLLMGLAAPHNALLIV 328 (473)
T ss_pred EECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH----------HHHHHHHHHHHHHHHHhccCchhHHHHH
Confidence 5434 4556667777777888999999999999999998862 33333222222221 11 22233333
Q ss_pred HHHHHHHHHhhccccccceeeccCCC-------C-cchhHHHHHHHHHhhHHhHHHHHHHHhhccc
Q psy10491 369 VCLILAMACNGGIYAGFKVNHIDISP-------C-FAGILMSITNCSANVVGMLAPTISGLLLNWF 426 (520)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~p-------~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 426 (520)
+..++.....+.......++..|+.+ + ..|..+|....+..++.++++.+.|.+.+..
T Consensus 329 i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~ 394 (473)
T PRK10429 329 IAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI 394 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333334444555555566533 2 2566899999999999999999999998744
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=179.22 Aligned_cols=395 Identities=12% Similarity=0.073 Sum_probs=237.5
Q ss_pred HHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhccc-CcchhHHHHHHH
Q psy10491 36 MLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNH-DSHKMLAYGMVV 114 (520)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~-Grr~~l~~~~~~ 114 (520)
.++...+...+..+.+...+|.... +++|++..+.+++.+.+.....++.++.|+++||+ ||||++.++.++
T Consensus 13 ~l~~~~~~e~fs~Yg~~~~L~~yL~-------~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 13 YVVALQIWEYFSFYGMRALLILYLT-------NQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 3344444444444445555555542 67899999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHhccccCchhhHHHHHhhhcCCC--cchhHHHHHHHHhHHHHHHhhhhhhhhhccc
Q psy10491 115 NAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPG--ERSFLGGIVYSGAQFGTIISYPVSGYLAYGT 192 (520)
Q Consensus 115 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~--~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~ 192 (520)
.+++.++.+....+...+.++..+.++|.|...+...++++|.+|++ +|..++++...+.++|..++|.+.+++.+.
T Consensus 86 ~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~- 164 (493)
T PRK15462 86 MAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE- 164 (493)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 99998877654211123333444445566666777889999999876 699999999999999999999999999887
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHhhcCCCC---CCCCChHHHHHH-----------------HhhccCCcccc----
Q psy10491 193 FLQGWPAIFYVFGVICLIWCVLFIFLVYENPHS---DKRVSVEEKEYI-----------------LYSIFGGDIIE---- 248 (520)
Q Consensus 193 ~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~---~~~~~~~~~~~~-----------------~~~~~~~~~~~---- 248 (520)
.|||+.|.+.++..++ .++.++..++...+ .++.+.++++.. ...........
T Consensus 165 --~Gw~~~F~iaaigm~l-~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (493)
T PRK15462 165 --YSWAMGFGLAAVGMIA-GLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALI 241 (493)
T ss_pred --hChHHHHHHHHHHHHH-HHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999987654433 43333332211111 011111111100 00000000000
Q ss_pred -----------ccccCccchhhhccch--hHHHHHHHHHHHHHHHHHHHHHhHHHHHhhc-----CCCcchhHHHHHhHH
Q psy10491 249 -----------DLKASSIPWGDIVKSG--PFLSILVAHMGQNFGYETLMTMLPTFLKEVL-----HFDMIKNGLISATPY 310 (520)
Q Consensus 249 -----------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~s~~~~~~~~~~~~ 310 (520)
.....+.+..+ |+| .+..+.+...+.+..+....+.+..|.++.. |++ ..+++..+...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~e--r~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp 318 (493)
T PRK15462 242 VATIIGLGVLAKIYRKAENQKQ--RKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINA 318 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCHHH--HhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhH
Confidence 00000000000 111 1233333344444455555556666665532 322 23567788888
Q ss_pred HHHHHHHHHHHHHHHHHHhh-ccccccchhhhhhhhhchhhhhhhhhhhc----cC----CChHHHHHHHHHHHHHhhcc
Q psy10491 311 IAMFITSSVLNYLADYFIRK-KILSTGATRKLMTSIGEYGPGLMFIIPVI----LG----FTHTPTIVCLILAMACNGGI 381 (520)
Q Consensus 311 ~~~~~~~~~~g~l~dr~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~ 381 (520)
+..++.+++.+++-.|..+| +-.. ...| ..+++.+.+++++.+.. .. .+.++.+...++........
T Consensus 319 ~~ii~l~P~~a~lw~~l~~~~~~~s--~~~K--fa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~ 394 (493)
T PRK15462 319 FAVMLCGVFLAWVVKESVAGNRTVR--IWGK--FALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFI 394 (493)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCC--cHHH--HHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 88888888888887777442 2111 1111 25666666666655432 11 12344555555556667778
Q ss_pred ccccceeeccCCCCc-chhHHHHHHHHH-hhHHhHHHHHHHHhhcccccc------ccchhHHHHHHHHHHHHHH
Q psy10491 382 YAGFKVNHIDISPCF-AGILMSITNCSA-NVVGMLAPTISGLLLNWFQHD------EMLSWKVVFLVSAVLYITC 448 (520)
Q Consensus 382 ~~~~~~~~~~~~p~~-~g~~~g~~~~~~-~~g~~i~~~~~g~l~~~~~~~------~~~~~~~~~~~~~~~~~~~ 448 (520)
.|...+...++.|++ +|..+|+..... .+|..++..+.+......... +...|...|...+...+++
T Consensus 395 sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 395 DPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred ChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence 888889899999987 999999985533 455555555554443200000 1234667777777666555
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.5e-21 Score=179.29 Aligned_cols=276 Identities=11% Similarity=0.060 Sum_probs=202.0
Q ss_pred HH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccc-------------cc
Q psy10491 129 IW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGT-------------FL 194 (520)
Q Consensus 129 ~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~-------------~~ 194 (520)
++ .++++-++.|.|.+...+..+.++++..++|++.+.+++.+.++++|..++|.+++.+.... +.
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA 88 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence 67 99999999999999999999999999999999999999999999999999999999887421 01
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHh--hcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHH
Q psy10491 195 QGWPAIFYVFGVICLIWCVLFIFLV--YENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVA 272 (520)
Q Consensus 195 ~gwr~~f~i~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (520)
.+|+++|++.+.+.++..++ +.+. ||.+++.. ++. .. ++....++++++|+++...+.
T Consensus 89 ~~~~~~yl~ia~~~~~~~i~-~~~~~~p~~~~~~~---~~~---------------~~-~~~~~~~~~~~~~~~~l~~~~ 148 (310)
T TIGR01272 89 AKVHTPYLLLAGALAVLAII-FAFLPLPELQEADV---ARV---------------SS-GDTTQKTSAFQFTHLVLGALG 148 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHccCCCCCcccc---ccc---------------cc-ccccchhhHHhhHHHHHHHHH
Confidence 47999999777665553433 3333 33221110 000 00 000112346778888888888
Q ss_pred HHHHHHHHHHHHHHhHHHHHhh--cCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhh
Q psy10491 273 HMGQNFGYETLMTMLPTFLKEV--LHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGP 350 (520)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 350 (520)
.+++.....++..|++.|+.+. +|+++.+++...+....+.++|+++.+++.||+++++.+ .++..+.
T Consensus 149 ~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l----------~~~~~l~ 218 (310)
T TIGR01272 149 IFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYL----------AFNAFLA 218 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH----------HHHHHHH
Confidence 8888888999999999999864 699999999999999999999999999999999988876 3343333
Q ss_pred hhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhccccccc
Q psy10491 351 GLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDE 430 (520)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~ 430 (520)
.+...+....+ ......... ..+++.+..+|.......+..|++.+++.++. ....+|+++.|.+.|.+.|
T Consensus 219 ~~~~~l~~~~~-~~~~~~~~~-l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad------ 289 (310)
T TIGR01272 219 VLLSIGAALTH-GYVAMWFVL-ALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLAD------ 289 (310)
T ss_pred HHHHHHHHHcC-CHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHH------
Confidence 33333333322 222223333 33455567777777777776777777777774 6788999999999999999
Q ss_pred cchhHHHHHHHHH
Q psy10491 431 MLSWKVVFLVSAV 443 (520)
Q Consensus 431 ~~~~~~~~~~~~~ 443 (520)
..+.+.++++...
T Consensus 290 ~~g~~~a~~v~~~ 302 (310)
T TIGR01272 290 CLGIQLAFALPVP 302 (310)
T ss_pred hccchHHHHHHHH
Confidence 5577777764443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-21 Score=193.34 Aligned_cols=327 Identities=11% Similarity=0.079 Sum_probs=209.8
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhccc----CcchhH-HHHHHHHHHHHHHH-Hh----HhhhHH-HHHHHH
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNH----DSHKML-AYGMVVNAVFALLV-PV----SSQSIW-CLAAVR 136 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~----Grr~~l-~~~~~~~~~~~~~~-~~----~~~~~~-~l~~~r 136 (520)
+.+|++..++|++.++..+..++..+++|+++||. ||||.. ..+.+...+..++. .. .....+ .+++.-
T Consensus 37 ~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (448)
T PRK09848 37 DVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTY 116 (448)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHH
Confidence 67899999999999999999999999999999996 777754 55555444444443 11 111123 455556
Q ss_pred HHHhccccCchhhHHHHHhhhcCC-CcchhHHHHHHHHhH-----HHHHHhhhhhhhhhccccccCcchHHHHHHHHHHH
Q psy10491 137 FIQGMGEGPIVPCTHAILAKWIPP-GERSFLGGIVYSGAQ-----FGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLI 210 (520)
Q Consensus 137 ~l~G~g~~~~~~~~~~~i~~~~~~-~~rg~~~~~~~~~~~-----~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~ 210 (520)
++.+++.+...++..++..+..++ ++|.+..++-..+.+ +|..++|.+++...... ..+|.....+.++++++
T Consensus 117 ~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~-~~~~~~~~~~~~v~~~~ 195 (448)
T PRK09848 117 MGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEM-VSVYHFWTIVLAIAGMV 195 (448)
T ss_pred HHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-hhhHHHHHHHHHHHHHH
Confidence 677888888887778887777754 578887766654433 44555555554332110 01222112233333333
Q ss_pred HHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy10491 211 WCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTF 290 (520)
Q Consensus 211 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (520)
..++.....||+++.+. ++...+..++.++|||+++...+..++............|.|
T Consensus 196 ~~~~~~~~~~e~~~~~~---------------------~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~ 254 (448)
T PRK09848 196 LYFICFKSTRENVVRIV---------------------AQPSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFY 254 (448)
T ss_pred HHHHHHcCcEeccCCCc---------------------cCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheee
Confidence 33333444455432211 111122345778999999998888888888888888888889
Q ss_pred HHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCC-ChHHHHH
Q psy10491 291 LKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGF-THTPTIV 369 (520)
Q Consensus 291 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 369 (520)
+++.+|.++...++......++.+++.++.+++.||+++|+.+ .++..+..++.+.+.+.+. +.+....
T Consensus 255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~----------~~g~~~~~i~~~~~~~~~~~~~~~~~~ 324 (448)
T PRK09848 255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTF----------LIGALLGTCGYLLFFWVSVWSLPVALV 324 (448)
T ss_pred EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH----------HHHHHHHHHHHHHHHHcCchhHHHHHH
Confidence 9888888776655555555677788899999999999999876 4555555555544444332 2233333
Q ss_pred HHHHHHHHhhccccccceeeccCCCC--------cchhHHHHHHHHHhhHHhHHHHHHHHhhccc
Q psy10491 370 CLILAMACNGGIYAGFKVNHIDISPC--------FAGILMSITNCSANVVGMLAPTISGLLLNWF 426 (520)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~p~--------~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 426 (520)
..++.....+...+...+...+..++ +.|..+|+.+....+|.++++.+.|.+.+..
T Consensus 325 ~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 325 ALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 23333333344445555555555432 2599999999999999999999999987643
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-20 Score=176.00 Aligned_cols=334 Identities=17% Similarity=0.114 Sum_probs=263.1
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcc----cCcchh-HHHHHHHHHHHHHHHHhHhh----hHH-HHHHHHH
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKN----HDSHKM-LAYGMVVNAVFALLVPVSSQ----SIW-CLAAVRF 137 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr----~Grr~~-l~~~~~~~~~~~~~~~~~~~----~~~-~l~~~r~ 137 (520)
+.+|+++...|.+..+.-+--++..|+.|.+.|| +||||. ++.+.+-.++.+.++-.+++ ..+ ..++.-.
T Consensus 41 dv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~ 120 (467)
T COG2211 41 DVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYM 120 (467)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHH
Confidence 7889999999999999999999999999999994 888665 66777888888888766642 345 7888889
Q ss_pred HHhccccCchhhHHHHHhhhcC-CCcchhHHHHHHHHhHHHHHHhhhhhhhhhcc----ccccCcchHHHHHHHHHHHHH
Q psy10491 138 IQGMGEGPIVPCTHAILAKWIP-PGERSFLGGIVYSGAQFGTIISYPVSGYLAYG----TFLQGWPAIFYVFGVICLIWC 212 (520)
Q Consensus 138 l~G~g~~~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~----~~~~gwr~~f~i~~~~~~~~~ 212 (520)
+.+++......+-.++.+|+.+ ++||.+..++-+.+.++|.++...+...+... +...||+..-.+.++++.+..
T Consensus 121 l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~ 200 (467)
T COG2211 121 LLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILL 200 (467)
T ss_pred HHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999995 67899999999999999977766666555442 113589998889898888888
Q ss_pred HHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy10491 213 VLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLK 292 (520)
Q Consensus 213 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (520)
+.+++..+|.+.+..+.+.+ .+.+.+..+..+++||++...++..++...+..........|.+
T Consensus 201 l~~~~~v~ER~~~~~~~~~~----------------~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~ 264 (467)
T COG2211 201 LFCFFNVKERVVETQPTKTG----------------VKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVT 264 (467)
T ss_pred HHHHHHhhcccCccccCccc----------------ccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEE
Confidence 88888888877633321110 11122223446789999999999888888888888888899999
Q ss_pred hhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCCh-HHHHHHH
Q psy10491 293 EVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTH-TPTIVCL 371 (520)
Q Consensus 293 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 371 (520)
...|.+.............+.+++.++..++.+|+|+|+.. ..+.++..++.+.+.+.+.+. .+.++..
T Consensus 265 y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~----------~~~~~~~~i~~~~~~f~~~~~~~l~~~~~ 334 (467)
T COG2211 265 YVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLF----------LIGLLLLAVGYLLLYFTPAGSVVLIVVAL 334 (467)
T ss_pred EEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHH----------HHHHHHHHHHHHHHHhhcCcchHHHHHHH
Confidence 88898888888888888888888899999999999999998 566777777777777666443 4445554
Q ss_pred HHHHHHhhccccccceeeccCCC--------CcchhHHHHHHHHHhhHHhHHHHHHHHhhcccc
Q psy10491 372 ILAMACNGGIYAGFKVNHIDISP--------CFAGILMSITNCSANVVGMLAPTISGLLLNWFQ 427 (520)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~p--------~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~ 427 (520)
++.....+...+...+...|+.. +..|...|....+.-+|.+++..+.|++.+..+
T Consensus 335 ~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 335 IIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66666667777777777776543 237888999999999999999999999998663
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=168.80 Aligned_cols=357 Identities=14% Similarity=0.102 Sum_probs=268.5
Q ss_pred ChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh-HHHHHHHHHHHHHHHHhHhh-hHH-HHHHHHHHHhccccCchhh
Q psy10491 73 STVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM-LAYGMVVNAVFALLVPVSSQ-SIW-CLAAVRFIQGMGEGPIVPC 149 (520)
Q Consensus 73 s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~-l~~~~~~~~~~~~~~~~~~~-~~~-~l~~~r~l~G~g~~~~~~~ 149 (520)
+.+..|...++..+..++.+|+.|.++|+.|+||. +-....+..++..+..++++ +.+ ..++.-++..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 55677899999999999999999999999998776 44555666666777777754 466 8888889999999999999
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhh--hhhhc-c------------ccccCcchHHHHHHHHHHHHHHH
Q psy10491 150 THAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVS--GYLAY-G------------TFLQGWPAIFYVFGVICLIWCVL 214 (520)
Q Consensus 150 ~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~--~~l~~-~------------~~~~gwr~~f~i~~~~~~~~~~~ 214 (520)
..+++.+..++++-++..++-.....+|.++.-++. ..... . .+...-|..+.+.++.-++..+.
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 999999999999888888877777777766544432 11111 0 01256788999999999998888
Q ss_pred HHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy10491 215 FIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEV 294 (520)
Q Consensus 215 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (520)
.++..|+.++...+....-. +.-++-..+++++.+++.+....++.++..-+..+...+...|....
T Consensus 216 m~~~v~~~~~~~~~~~~~l~-------------~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~ 282 (438)
T COG2270 216 MILNVHDAEKISSPPPTALR-------------NGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAAD 282 (438)
T ss_pred HHhcccccccccccchHHHH-------------HHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 88888877653211111000 02233345667888888999999999999999999999999999988
Q ss_pred cCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHH
Q psy10491 295 LHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILA 374 (520)
Q Consensus 295 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (520)
+|++..+..++.....+..++|+++.|++.||+|.|+.+ .+++++..+..+...+.......++..++++
T Consensus 283 ~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl----------~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g 352 (438)
T COG2270 283 LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVL----------MIGLVILSIAALYLIFLEGELDFWILGLLVG 352 (438)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceee----------hHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877 4666665555555555554444444445555
Q ss_pred HHHhhccccccceeec-cCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy10491 375 MACNGGIYAGFKVNHI-DISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYL 453 (520)
Q Consensus 375 ~~~~~~~~~~~~~~~~-~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (520)
.+. +......-++.. .++|++-++.+|+++..+.....+||.+.+.+.+. ..+-+..+....++..++.++.+
T Consensus 353 ~s~-G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~i-----Tg~~r~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 353 TSL-GGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQI-----TGSSRAGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred Hhc-chHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHH-----hcchhhHHHHHHHHHHhhHhhEE
Confidence 554 444444444444 45556699999999999999999999999999983 34567777777777777777766
Q ss_pred HhcCC
Q psy10491 454 LFSSG 458 (520)
Q Consensus 454 ~~~~~ 458 (520)
..+.+
T Consensus 427 ~v~~~ 431 (438)
T COG2270 427 RVKVP 431 (438)
T ss_pred eecCC
Confidence 55544
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=181.14 Aligned_cols=325 Identities=11% Similarity=0.021 Sum_probs=214.0
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcc----cCcchh-HHHHHHHHHHHHHHHHhHhh---h-HH-HHHHHHH
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKN----HDSHKM-LAYGMVVNAVFALLVPVSSQ---S-IW-CLAAVRF 137 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr----~Grr~~-l~~~~~~~~~~~~~~~~~~~---~-~~-~l~~~r~ 137 (520)
+..|+++..+|.+..+.-+--++..|+.|.++|| +||||. ++++.+..+++.+++-..+. + .+ ++++.-+
T Consensus 38 ~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~ 117 (460)
T PRK11462 38 DIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYT 117 (460)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 6789999999999999999999999999999995 799765 55676777777666543321 1 14 6666777
Q ss_pred HHhccccCchhhHHHHHhhhcC-CCcchhHHHHHHHHhHHHHHHhhhhhhhhhccc----cccCcchHHHHHHHHHHHHH
Q psy10491 138 IQGMGEGPIVPCTHAILAKWIP-PGERSFLGGIVYSGAQFGTIISYPVSGYLAYGT----FLQGWPAIFYVFGVICLIWC 212 (520)
Q Consensus 138 l~G~g~~~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~----~~~gwr~~f~i~~~~~~~~~ 212 (520)
+..++......+-.++.+|..+ ++||++..++...+..+|..+++.+...+.+.. ...+|+....+.+++.+++.
T Consensus 118 ~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~ 197 (460)
T PRK11462 118 LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML 197 (460)
T ss_pred HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 7788888888889999999997 688999999999999999888877765544321 01368887777777776655
Q ss_pred HHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy10491 213 VLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLK 292 (520)
Q Consensus 213 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (520)
.+.++..+|.++..+ ++...+...+..++||.++.+....++..............|.+
T Consensus 198 ~i~~~~~kE~~~~~~---------------------~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~ 256 (460)
T PRK11462 198 AFCFFTTKERVEAPP---------------------TTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVT 256 (460)
T ss_pred HHHHhcceeccCCCc---------------------cCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Confidence 555555566432211 00111224466788888887776666666655555555555555
Q ss_pred hhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCC-hHH-HHHH
Q psy10491 293 EVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFT-HTP-TIVC 370 (520)
Q Consensus 293 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 370 (520)
...|.+ ...+.+.....++.+++.++++++.||+++|+... .+..+..+....+.+.+.. ... .+..
T Consensus 257 y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (460)
T PRK11462 257 WILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFW----------WTNALLAVISLAMFFVPMQASITMFVFI 325 (460)
T ss_pred hhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH----------HHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 544533 33455667778888999999999999999987652 1222222211222222222 222 2222
Q ss_pred HHHHHHHhhccccccceeeccCCC-------Cc-chhHHHHHHHHHhhHHhHHHHHHHHhhcc
Q psy10491 371 LILAMACNGGIYAGFKVNHIDISP-------CF-AGILMSITNCSANVVGMLAPTISGLLLNW 425 (520)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~p-------~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 425 (520)
++.+.+ .+...+.......|+.+ ++ .|..++....+..+|.++++.+.|.+.+.
T Consensus 326 ~l~g~~-~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~ 387 (460)
T PRK11462 326 FVIGVL-HQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY 387 (460)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223322 23333333444555443 22 45556777788999999999999999874
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=173.25 Aligned_cols=291 Identities=15% Similarity=0.210 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHH
Q psy10491 31 HWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAY 110 (520)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~ 110 (520)
...+.++.+..+...+....+...+..+. +.|+++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiE--------rRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~ 167 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIE--------RRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGI 167 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhh--------hhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeee
Confidence 34455666677777777777778888888 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHh------------------------------------------------hh--HH-HHHHHHHHH
Q psy10491 111 GMVVNAVFALLVPVSS------------------------------------------------QS--IW-CLAAVRFIQ 139 (520)
Q Consensus 111 ~~~~~~~~~~~~~~~~------------------------------------------------~~--~~-~l~~~r~l~ 139 (520)
|+++++++++++++-. .+ .| .++++.++.
T Consensus 168 G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~ 247 (735)
T KOG3626|consen 168 GLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLL 247 (735)
T ss_pred chhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHh
Confidence 9999999999987620 00 36 899999999
Q ss_pred hccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccc----------------cCcchHHHH
Q psy10491 140 GMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFL----------------QGWPAIFYV 203 (520)
Q Consensus 140 G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~----------------~gwr~~f~i 203 (520)
|+|....++.+.+|+-|...+++-...+|++.....+|.++|.++++++.+...+ ..|..-|++
T Consensus 248 GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi 327 (735)
T KOG3626|consen 248 GIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI 327 (735)
T ss_pred hcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998763111 136667888
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhcc-CCccc---cccccCccchhhhccchhHHHHHHHHHHHHHH
Q psy10491 204 FGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIF-GGDII---EDLKASSIPWGDIVKSGPFLSILVAHMGQNFG 279 (520)
Q Consensus 204 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (520)
.+.+.++.++..+++-++.|+..++.+.++.+....+.. .+... ...+..+...+++++||.+...++...+....
T Consensus 328 ~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~ 407 (735)
T KOG3626|consen 328 CGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLA 407 (735)
T ss_pred HHHHHHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 888887766555554334443332211111111000000 00000 01123345678889999999999999999999
Q ss_pred HHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHH-HHHHHHHHHHHHHHHh
Q psy10491 280 YETLMTMLPTFLKEVLHFDMIKNGLISATPYIAM-FITSSVLNYLADYFIR 329 (520)
Q Consensus 280 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~-~~~~~~~g~l~dr~g~ 329 (520)
+.++.+|+|.|+++.+|.++..+..+....++.. .+|.+++|++.+|+..
T Consensus 408 ~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl 458 (735)
T KOG3626|consen 408 ITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKL 458 (735)
T ss_pred HhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecc
Confidence 9999999999999999999999999887776655 5678888999988754
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-18 Score=162.38 Aligned_cols=392 Identities=14% Similarity=0.153 Sum_probs=242.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhee-eeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCc-c
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVA-IVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDS-H 105 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Gr-r 105 (520)
+.+|+.+.+..+..++.......+.+. -|++.. -|.+.+.+..||+.++..++.+++++..|++..|.+. |
T Consensus 30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~-------lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k 102 (488)
T KOG2325|consen 30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQK-------LDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVK 102 (488)
T ss_pred CCchHhHHHHHHHHHHHhhhheEEEeecchhhhh-------cCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcc
Confidence 445666666666666666665544443 333331 2477788899999999999999999999999999997 8
Q ss_pred hhHHHHHHHHHHHHHHH-HhH--hhhH-HHHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHh
Q psy10491 106 KMLAYGMVVNAVFALLV-PVS--SQSI-WCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIIS 181 (520)
Q Consensus 106 ~~l~~~~~~~~~~~~~~-~~~--~~~~-~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g 181 (520)
+.++.|.++..+|+++. ++. +++. |.++++|++.|+|.| ......+|+++....++|.++++....+..+|.++|
T Consensus 103 ~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilG 181 (488)
T KOG2325|consen 103 KPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILG 181 (488)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHh
Confidence 88999999999999998 333 2212 399999999999976 467789999999999999999999999999999999
Q ss_pred hhhhhhhhccccccC-----------cchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCcccccc
Q psy10491 182 YPVSGYLAYGTFLQG-----------WPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDL 250 (520)
Q Consensus 182 ~~l~~~l~~~~~~~g-----------wr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (520)
|.++..+...+. .| +-.+-|+.+++.++..++..++++|.++.....+.+..++ . +...++.
T Consensus 182 p~~q~~f~~Lg~-~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~----~--~~~~~~~ 254 (488)
T KOG2325|consen 182 PTIQLAFTPLGE-KGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEE----E--KSDIEKV 254 (488)
T ss_pred HHHHHHHhhhcC-CceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchh----h--ccchhhh
Confidence 998877765321 12 2345688888888888888888888776543221111000 0 0000000
Q ss_pred ccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHH----HHhHHHHHHHHHHHHHHHH-H
Q psy10491 251 KASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLI----SATPYIAMFITSSVLNYLA-D 325 (520)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~----~~~~~~~~~~~~~~~g~l~-d 325 (520)
+..+. ..+..+.+.+..+...+......+..+.+....++++..++... .++.++......+...+.. .
T Consensus 255 ~~~~~------d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~ 328 (488)
T KOG2325|consen 255 KKPKL------DWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLG 328 (488)
T ss_pred ccCCh------hHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 10111 11233455555666666666667777777777788877765443 3333333333333333322 2
Q ss_pred HHHhhccccccchhhhhhhhhchhhhhhh----hhhhccCCC----------------------h-HHHHHHHHHHHHHh
Q psy10491 326 YFIRKKILSTGATRKLMTSIGEYGPGLMF----IIPVILGFT----------------------H-TPTIVCLILAMACN 378 (520)
Q Consensus 326 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----------------------~-~~~~~~~~~~~~~~ 378 (520)
++.+|..+. .+.+...... ....+.... . ...+...+......
T Consensus 329 ~i~~r~~~~----------~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~ 398 (488)
T KOG2325|consen 329 KIDKRRIIL----------LGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVF 398 (488)
T ss_pred hhccceeee----------ehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhhee
Confidence 223344432 2211111111 111111100 0 00111111111122
Q ss_pred hcccc-----ccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy10491 379 GGIYA-----GFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYL 453 (520)
Q Consensus 379 ~~~~~-----~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (520)
+...| ....+...+.|+++++..|+.......+..++|.+...+.. ..|++..+.+..+..++...++.
T Consensus 399 g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~------~~g~~~v~~~~~~~~l~~~~l~~ 472 (488)
T KOG2325|consen 399 GIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT------LSGPRPVWIILLCLLLVVAALWI 472 (488)
T ss_pred ccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH------hcCccHHHHHHHHHHHHHHHHHH
Confidence 22333 22333445678889999999999999999999999888887 55777777776666665555544
Q ss_pred Hhc
Q psy10491 454 LFS 456 (520)
Q Consensus 454 ~~~ 456 (520)
...
T Consensus 473 ~~~ 475 (488)
T KOG2325|consen 473 VFL 475 (488)
T ss_pred HHH
Confidence 443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-17 Score=152.39 Aligned_cols=358 Identities=17% Similarity=0.143 Sum_probs=252.2
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccC-----cchh-HHHHHHHHHHHHHHHHhHh----h-------hH-
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHD-----SHKM-LAYGMVVNAVFALLVPVSS----Q-------SI- 129 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~G-----rr~~-l~~~~~~~~~~~~~~~~~~----~-------~~- 129 (520)
.|++++....+.+.+...+.. ...+.+|+.+|+.+ ||.. +..|.+..+.+..+..++. . +.
T Consensus 8 vEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~ 86 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW 86 (403)
T ss_pred HHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence 688999999999988888774 56999999999999 7765 5556676666665554431 1 12
Q ss_pred --H-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCc-ch--HHHH
Q psy10491 130 --W-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGW-PA--IFYV 203 (520)
Q Consensus 130 --~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gw-r~--~f~i 203 (520)
. ...+.-.+.|+|.+....+..++++|..|+|+|+++.++...+.-+|.+++..+.+.+.+. ++- |. ++..
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~---~s~~rL~~v~~~ 163 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP---FSPERLIQVIQG 163 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc---cCHHHHHHHHHH
Confidence 2 4566678889999999999999999999999999999999999999999999999988876 332 22 2222
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHH
Q psy10491 204 FGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETL 283 (520)
Q Consensus 204 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (520)
.+++.++..++..+. .|++........+ +++......++++..+|+.....+..++...+++.-
T Consensus 164 ~a~i~~~l~~ia~wg-~E~r~~~~~~~~~---------------~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~Q 227 (403)
T PF03209_consen 164 VALIALLLNLIALWG-QEPRRSRRAAAAE---------------RPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQ 227 (403)
T ss_pred HHHHHHHHHHHHHHh-cccCCcccccCCC---------------CCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhh
Confidence 333333323333332 2332222210000 023334456778888999888888888888888888
Q ss_pred HHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHH-HHHhhccccccchhhhhhhhhchhhhhhhhhh---hc
Q psy10491 284 MTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLAD-YFIRKKILSTGATRKLMTSIGEYGPGLMFIIP---VI 359 (520)
Q Consensus 284 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 359 (520)
...+-.|-.+.+|++..+...+....+.+..++....|++.. |.++++.. ..++..+.+++..+ ..
T Consensus 228 D~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a----------~~G~~~~~~~f~lii~a~~ 297 (403)
T PF03209_consen 228 DVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTA----------ALGCLLGALAFALIILAGP 297 (403)
T ss_pred HHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHH----------HHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999998776 45555443 34444444444333 33
Q ss_pred cCCChHHHHHHHHHHHHHhhccccccceeeccC-CCCcchhHHHHHHHHHhhHHhHHHHHHHHhhccc---cc-cccchh
Q psy10491 360 LGFTHTPTIVCLILAMACNGGIYAGFKVNHIDI-SPCFAGILMSITNCSANVVGMLAPTISGLLLNWF---QH-DEMLSW 434 (520)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~---~~-~~~~~~ 434 (520)
..+........++++.+. +...........+. .+++.|..+|.....+.+...++..+.|.+.|.. .. ....+|
T Consensus 298 ~~~~~~~~~~~~l~G~g~-G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY 376 (403)
T PF03209_consen 298 LGSPWLFRPGVFLLGLGN-GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAY 376 (403)
T ss_pred cccchHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHH
Confidence 333333444444444443 44444344444444 4566999999999999999999999999999843 22 356688
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy10491 435 KVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
...|.+-++..+++..+...+.
T Consensus 377 ~~VF~lEa~ll~~a~~ll~~l~ 398 (403)
T PF03209_consen 377 GVVFALEAVLLLAALVLLGRLD 398 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888888777665443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.2e-20 Score=184.08 Aligned_cols=374 Identities=12% Similarity=0.166 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHH
Q psy10491 36 MLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVN 115 (520)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~ 115 (520)
.+++..+...+....+...+..++ +.|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-+|.+++
T Consensus 7 ~~~~~~~~q~~~~g~~~~~lttiE--------rRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~ 78 (539)
T PF03137_consen 7 FLCLLGLFQMMVSGYVNSSLTTIE--------RRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLM 78 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHH
Confidence 344455555555666777788888 899999999999999999999999999999999988888999999999
Q ss_pred HHHHHHHHhHh-----------------------------------------------hh-HH-HHHHHHHHHhccccCc
Q psy10491 116 AVFALLVPVSS-----------------------------------------------QS-IW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 116 ~~~~~~~~~~~-----------------------------------------------~~-~~-~l~~~r~l~G~g~~~~ 146 (520)
++|++++++-+ .+ .+ .++++.++.|+|.+..
T Consensus 79 ~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl 158 (539)
T PF03137_consen 79 GLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPL 158 (539)
T ss_dssp -------------------------------------------------------------------------SSS----
T ss_pred HHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCC
Confidence 99999876410 00 24 8999999999999999
Q ss_pred hhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccc---------------cc----cCcchHHHHHHHH
Q psy10491 147 VPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGT---------------FL----QGWPAIFYVFGVI 207 (520)
Q Consensus 147 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~---------------~~----~gwr~~f~i~~~~ 207 (520)
++.+.+|+-|.+++++-+..+|++.+...+|.++|.++++.+.... ++ ..|-.-|++.+.+
T Consensus 159 ~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~ 238 (539)
T PF03137_consen 159 YTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGIL 238 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998877531 01 1366667777777
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCChHHHH--HHH----hhccCCc----cccccccCccchhhhccchhHHHHHHHHHHHH
Q psy10491 208 CLIWCVLFIFLVYENPHSDKRVSVEEKE--YIL----YSIFGGD----IIEDLKASSIPWGDIVKSGPFLSILVAHMGQN 277 (520)
Q Consensus 208 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (520)
.++.++..+++-++-|...+....++.+ +.. +...+.. ..+..+......+++++||.+....+......
T Consensus 239 ~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~ 318 (539)
T PF03137_consen 239 LFLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFES 318 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 7775555554433333331111100000 000 0000000 00122344566788899999999999999999
Q ss_pred HHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHH-HHHHHHHHHHHHHHHHHhh--ccccccchhhhhhhhhchhhhhhh
Q psy10491 278 FGYETLMTMLPTFLKEVLHFDMIKNGLISATPYI-AMFITSSVLNYLADYFIRK--KILSTGATRKLMTSIGEYGPGLMF 354 (520)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~~--~~~~~~~~~~~~~~~~~~~~~~~~ 354 (520)
+...++.+++|.|++.+++.++.+++++.....+ +..+|.+++|++.+|++-+ ...... .+..++..+..
T Consensus 319 ~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~-------~v~~~v~~~~~ 391 (539)
T PF03137_consen 319 FIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFC-------IVVSIVSVILY 391 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHH-------HHHHHHHHHHH
Confidence 9999999999999999999999999998776666 5567889999999998643 222110 11111111110
Q ss_pred hhhh---------------c-------------------------------cCCC----hHHHHHHHHHH-HHHhhcccc
Q psy10491 355 IIPV---------------I-------------------------------LGFT----HTPTIVCLILA-MACNGGIYA 383 (520)
Q Consensus 355 ~~~~---------------~-------------------------------~~~~----~~~~~~~~~~~-~~~~~~~~~ 383 (520)
.... . .+.+ ...+.+..++. .+......|
T Consensus 392 ~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p 471 (539)
T PF03137_consen 392 SPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVP 471 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccc
Confidence 0000 0 0000 01122222222 222333445
Q ss_pred ccceeeccCCCCcchhHHHHHHHHHh-hHHhHHHHHHHHhhc
Q psy10491 384 GFKVNHIDISPCFAGILMSITNCSAN-VVGMLAPTISGLLLN 424 (520)
Q Consensus 384 ~~~~~~~~~~p~~~g~~~g~~~~~~~-~g~~i~~~~~g~l~~ 424 (520)
.......-+.+++|+.|.|+...+.. +|.+-+|.++|.+.|
T Consensus 472 ~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD 513 (539)
T PF03137_consen 472 STLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIID 513 (539)
T ss_dssp ------------------------------------------
T ss_pred hheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHh
Confidence 55555666777789999999887655 677999999999999
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-16 Score=147.33 Aligned_cols=381 Identities=17% Similarity=0.125 Sum_probs=241.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcc-cCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCc
Q psy10491 69 SKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKN-HDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 69 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~ 146 (520)
.+|+++++..-+.++|..---+..++.|+++|| +|+|+++..|.+++.+|.++.+....... .+.++-++.++|.|..
T Consensus 55 gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~ 134 (498)
T COG3104 55 GLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLF 134 (498)
T ss_pred cCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccc
Confidence 477999999888898888888999999999999 59999999999999999999988821355 8888888889999999
Q ss_pred hhhHHHHHhhhcCCC--cchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcC--
Q psy10491 147 VPCTHAILAKWIPPG--ERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYEN-- 222 (520)
Q Consensus 147 ~~~~~~~i~~~~~~~--~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~-- 222 (520)
=+....+++|.+|++ +|-..++++.++.++|+.++|++.+++.+. .||...|-+.++-..+ .++.+...+..
T Consensus 135 K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~---~g~~~gF~~aavGm~~-gl~~f~~~~r~~~ 210 (498)
T COG3104 135 KPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN---YGWHVGFGLAAVGMII-GLVIFLLGRRHVK 210 (498)
T ss_pred cccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHH-HHHHHHHccchhc
Confidence 999999999999875 478889999999999999999999999998 8999999887766655 44444444322
Q ss_pred --CCCCCCC--ChHHHHHHH--------hh----ccCCcc-----------ccc-cccCccchhhhccc-hh---HHHHH
Q psy10491 223 --PHSDKRV--SVEEKEYIL--------YS----IFGGDI-----------IED-LKASSIPWGDIVKS-GP---FLSIL 270 (520)
Q Consensus 223 --~~~~~~~--~~~~~~~~~--------~~----~~~~~~-----------~~~-~~~~~~~~~~~~~~-~~---~~~~~ 270 (520)
+....+. +..+..... .. ...... .+. .-.+...+.+...+ ++ ...++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lf 290 (498)
T COG3104 211 GIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLF 290 (498)
T ss_pred CCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHH
Confidence 1111111 111100000 00 000000 000 00000000111111 12 22333
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhcCCC----cchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhh
Q psy10491 271 VAHMGQNFGYETLMTMLPTFLKEVLHFD----MIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIG 346 (520)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s----~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 346 (520)
+.....+..+....+.+..|..+..+.+ ....++..+...+..++.+++..++..|.++++.-.. ...| ..++
T Consensus 291 l~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps-~~~K--FalG 367 (498)
T COG3104 291 LFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPS-TPIK--FALG 367 (498)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCC-cchH--HHHH
Confidence 3334444444444445555554432211 2345778888889999999999999888666531111 0111 2455
Q ss_pred chhhhhhhhhhhcc----C---C--ChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHH
Q psy10491 347 EYGPGLMFIIPVIL----G---F--THTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAP 416 (520)
Q Consensus 347 ~~~~~~~~~~~~~~----~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~ 416 (520)
+.+++.+++++... . + +.++.+...++..+......|.-..+.....|+. .+.++++.......+..++.
T Consensus 368 l~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g 447 (498)
T COG3104 368 LILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGG 447 (498)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555555544332 1 1 2355555566666666777888888888888877 88888887777777777776
Q ss_pred HHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 417 TISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 417 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
.+.+.-...............|+.++...++..++.+...
T Consensus 448 ~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~ 487 (498)
T COG3104 448 QVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLS 487 (498)
T ss_pred eecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 6665321111112245566778888777777666655443
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-16 Score=152.49 Aligned_cols=318 Identities=15% Similarity=0.172 Sum_probs=224.0
Q ss_pred HHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhccc--cCchhhHHHHHhhhcCC
Q psy10491 83 SFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGE--GPIVPCTHAILAKWIPP 160 (520)
Q Consensus 83 ~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~--~~~~~~~~~~i~~~~~~ 160 (520)
...+...+.++..|.++||+|||..+........+..+...+.. .|.++ +.|+.. +.......++++|....
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~----~~~l~g~~~~~~s~~~a~vadis~~ 143 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL----LLGLSGGFSAIFSVGFAYVADISSE 143 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh----hcccccchhhhhhhhhhheeeccch
Confidence 34677789999999999999999999999999999888887774 44333 444332 34577888999999999
Q ss_pred CcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhh
Q psy10491 161 GERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYS 240 (520)
Q Consensus 161 ~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 240 (520)
++|...+|+.......+..++|.+++.+.+. .|.-.+|++..+..++..+..++++||+..++.+...+.... .
T Consensus 144 ~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~---~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~---~ 217 (463)
T KOG2816|consen 144 EERSSSIGLLSGTFGAGLVIGPALGGYLVKF---LGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLREL---T 217 (463)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccccc---C
Confidence 9999999999999999999999999999998 899999999999999988889999999866544331000000 0
Q ss_pred ccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHH-HhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHH
Q psy10491 241 IFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMT-MLPTFLKEVLHFDMIKNGLISATPYIAMFITSSV 319 (520)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~ 319 (520)
...... .............-.+|..+.+++..+.......+-.. ..+.|+...++++..+.+.+.+..+....++..+
T Consensus 218 ~~~~~~-~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~ 296 (463)
T KOG2816|consen 218 PGSLDS-SHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLL 296 (463)
T ss_pred CCcccc-hhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00000111111122344555555555554444332222 4567788889999999999999999999998877
Q ss_pred HH-HHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeec-cCCCCcc
Q psy10491 320 LN-YLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHI-DISPCFA 397 (520)
Q Consensus 320 ~g-~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~ 397 (520)
.. .+...++.++.. ..|+..-.+......+..+.+..+. ......+. ....+...+... .+.++++
T Consensus 297 ~~~~l~~~l~~~~~i----------~lGl~~~~~~~~~~af~~~~w~~~~-~~v~~~~~-~~~~pa~~s~~s~~v~~~e~ 364 (463)
T KOG2816|consen 297 LLPLLSSILGEKRLI----------SLGLLSEFLQLLLFAFATETWMMFA-AGVVVALA-GIVFPAIRAFASILVSPEEQ 364 (463)
T ss_pred HHHHHHHHHhhhhHh----------hHHHHHHHHHHHHHHHhccchhhhH-HHHHHHhh-cchhHHHHhHHHhhcccccc
Confidence 76 677778888754 6777777777777776654443333 33333332 344444444444 4566779
Q ss_pred hhHHHHHHHHHhhHHhHHHHHHHHhhcc
Q psy10491 398 GILMSITNCSANVVGMLAPTISGLLLNW 425 (520)
Q Consensus 398 g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 425 (520)
|++.++...+..+...++|.+.+.++..
T Consensus 365 g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 365 GKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred cchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999999999999999999998763
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-15 Score=125.00 Aligned_cols=137 Identities=28% Similarity=0.485 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhc
Q psy10491 80 LLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWI 158 (520)
Q Consensus 80 ~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~ 158 (520)
+.+.+.++..++.++.|++.||+|||+.+..+..+..++.+...+.+ +. .+.+.+++.|++.+...+....++.|.+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS--NITVLIIARFLQGFGAAFALVAGAALIADIY 80 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence 34566788899999999999999999999999999999988888874 55 8888999999999999999999999999
Q ss_pred CCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhc
Q psy10491 159 PPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYE 221 (520)
Q Consensus 159 ~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e 221 (520)
|+++|++..++.+....+|..+++.+++.+.+. .+|++.|++.+.+.++..+..++..||
T Consensus 81 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 81 PPEERGVALGLMSAGIALGPLLGPPLGGVLAQF---LGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred ChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc---cchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999887 799999999888887766666665554
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-14 Score=143.36 Aligned_cols=157 Identities=14% Similarity=0.132 Sum_probs=119.4
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHH-HHhHhhhHH-HHHHHHHHHhccccC
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALL-VPVSSQSIW-CLAAVRFIQGMGEGP 145 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~-~~~~~~~~~-~l~~~r~l~G~g~~~ 145 (520)
+++|.+..+.++..+...++..++.++.|+++||+|||+.+.++.++..++.+. ......++. .+++++++.|++.+.
T Consensus 279 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 358 (490)
T PRK10642 279 HNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNC 358 (490)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 567888888888888999999999999999999999999988887654443332 222212245 778889999988777
Q ss_pred chhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy10491 146 IVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHS 225 (520)
Q Consensus 146 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~ 225 (520)
.......++.|.+|++.|++++++......++..++|.+.+++.+.. .+|+.++++..+++++ .++..+++||+|++
T Consensus 359 ~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~--~~~~~~~~~~~~~~~i-~~~~~~~~pes~~~ 435 (490)
T PRK10642 359 FTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST--QNLMMPAYYLMVVAVI-GLITGVTMKETANR 435 (490)
T ss_pred HHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHH-HHHHHHHhccccCC
Confidence 77778889999999999999999755555566778888888887651 3588887777666666 44455667999876
Q ss_pred CC
Q psy10491 226 DK 227 (520)
Q Consensus 226 ~~ 227 (520)
..
T Consensus 436 ~~ 437 (490)
T PRK10642 436 PL 437 (490)
T ss_pred CC
Confidence 43
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.8e-15 Score=146.19 Aligned_cols=151 Identities=16% Similarity=0.219 Sum_probs=130.3
Q ss_pred ChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhh--HH-HHHHHHHHHhccccCchhh
Q psy10491 73 STVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQS--IW-CLAAVRFIQGMGEGPIVPC 149 (520)
Q Consensus 73 s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~-~l~~~r~l~G~g~~~~~~~ 149 (520)
+.++.+.+.++..++..++.++.|+++||+|||+++.++.++.+++..+......+ ++ .+++.+++.|++.+...+.
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999998887766664211 34 6778899999999988889
Q ss_pred HHHHHhhhcCCCcchhHHHHHH-HHhHHHHHHhhhhhhhhhccccc---cCcchHHHHHHHHHHHHHHHHHHHhhcCC
Q psy10491 150 THAILAKWIPPGERSFLGGIVY-SGAQFGTIISYPVSGYLAYGTFL---QGWPAIFYVFGVICLIWCVLFIFLVYENP 223 (520)
Q Consensus 150 ~~~~i~~~~~~~~rg~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~~---~gwr~~f~i~~~~~~~~~~~~~~~~~e~~ 223 (520)
...++.|++|+++|++++|+.+ ...++|.++||+++|.+.++.+. .||+..|++.+++.++..++.++++||+.
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 8999999999999999999997 67889999999999999886322 46999999999998888888888888763
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-14 Score=140.97 Aligned_cols=372 Identities=14% Similarity=0.123 Sum_probs=218.2
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccC-----cchhHHHHHHHHHHHHHHHHhHhh--hHH-HHHHHHHHH
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHD-----SHKMLAYGMVVNAVFALLVPVSSQ--SIW-CLAAVRFIQ 139 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~G-----rr~~l~~~~~~~~~~~~~~~~~~~--~~~-~l~~~r~l~ 139 (520)
+++|+++++.....+...+...+ -+++|.++|.+- ||+-++++.++.+++.+..+..+. .+. ...++-++.
T Consensus 18 ~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la 96 (433)
T PF03092_consen 18 DDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLA 96 (433)
T ss_pred HHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHH
Confidence 79999999999988888877655 678899999762 455577777777666666665532 144 666777888
Q ss_pred hccccCchhhHHHHHhhhcC--CCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHH
Q psy10491 140 GMGEGPIVPCTHAILAKWIP--PGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIF 217 (520)
Q Consensus 140 G~g~~~~~~~~~~~i~~~~~--~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~ 217 (520)
.+|.+....++-+++.|... +++||...+.......+|.+++..++|.+.+. .++|..|.+.+++.++..+...+
T Consensus 97 ~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~---~~~~~~f~i~~~~~~l~~~~~~~ 173 (433)
T PF03092_consen 97 SFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS---FGPQGVFLISAALPLLMLIVALF 173 (433)
T ss_pred HHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc---CCCeEEehHHHHHHHHHHHHHHH
Confidence 89999999999999999983 44478889999999999999999999999988 89999999998888886666666
Q ss_pred HhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHH-HHHHHHHHHHHHHHHhHHHHHhhcC
Q psy10491 218 LVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILV-AHMGQNFGYETLMTMLPTFLKEVLH 296 (520)
Q Consensus 218 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g 296 (520)
..+|.++..+. +..... ++.. .......++.....++.++.|.+|...+ ..++.......-....-.+..+..+
T Consensus 174 ~~~e~~~~~~~-~~~~~~---~~~~-~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~ 248 (433)
T PF03092_consen 174 LLEERKVRPAD-EVFSFG---KEEV-PCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALG 248 (433)
T ss_pred hhhhccccccc-hhhccc---cccc-chhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEecccc
Confidence 66662221111 000000 0000 0000001222334566677777776655 2222221111100000001122234
Q ss_pred ---CCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhc---------cCCCh
Q psy10491 297 ---FDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVI---------LGFTH 364 (520)
Q Consensus 297 ---~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 364 (520)
+++...+.+..+..++.++|..+..+...+..-|+.+ .....+.....+.-+.. .++.
T Consensus 249 gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~---------~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~- 318 (433)
T PF03092_consen 249 GPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIF---------VVTTLVSVLASLFDLLLVTRWNLDLGIPDQ- 318 (433)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH---------HHHHHHHHHHhcccEEEEEEEeeeeCcCCe-
Confidence 7777666666555566666655554443333333333 12221111111111111 1111
Q ss_pred HHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccc--cccchhHHHHHHH
Q psy10491 365 TPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQH--DEMLSWKVVFLVS 441 (520)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~--~~~~~~~~~~~~~ 441 (520)
+....--++.-.......-+......++.|+. -|+.+++...+.++|..++..++..+.+.++. ....+.....+++
T Consensus 319 ~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~ 398 (433)
T PF03092_consen 319 WFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILIC 398 (433)
T ss_pred EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHH
Confidence 22222222222222333333444455666655 99999999999999999999999988886532 1222344455555
Q ss_pred HHHHHHHHHHHHHhcCC
Q psy10491 442 AVLYITCATVYLLFSSG 458 (520)
Q Consensus 442 ~~~~~~~~~~~~~~~~~ 458 (520)
.++.++...+..++++.
T Consensus 399 ~~~~ll~l~ll~lLp~~ 415 (433)
T PF03092_consen 399 SVIQLLPLPLLFLLPPQ 415 (433)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 66665555555555553
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-13 Score=125.58 Aligned_cols=235 Identities=17% Similarity=0.070 Sum_probs=164.9
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~ 146 (520)
+++|.+..|++.+....+...++..++.|.++||+|||+.-++-+++.+++++..-. + ++ .++++|++.|++.+..
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-~--~~~~L~~GRvlgGiaTSLL 138 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-S--NYPVLLLGRVLGGIATSLL 138 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-c--ccHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999998875533 3 66 9999999999999988
Q ss_pred hhhHHHHH-hhhcCCC----cchhHHHHHH-HHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhh
Q psy10491 147 VPCTHAIL-AKWIPPG----ERSFLGGIVY-SGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVY 220 (520)
Q Consensus 147 ~~~~~~~i-~~~~~~~----~rg~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~ 220 (520)
+.+--+++ .|.-..+ ..+..++... ...++-.+++.+++..+.+..+ .|-..+|....++.++..+++...-+
T Consensus 139 fS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-~g~vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 139 FSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG-FGPVAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHHHHhccc
Confidence 88877774 5553222 2233333222 2233444556666666666411 24488998877777776666655556
Q ss_pred cCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHH-HhHHHHHhhcCCCc
Q psy10491 221 ENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMT-MLPTFLKEVLHFDM 299 (520)
Q Consensus 221 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~ 299 (520)
|+..+..+..+ ..+..+..++.+.+||+++.+.+...+.-...+.+.. |.|.. +. +-..
T Consensus 218 ENyg~~~~~~~-----------------~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL-~~--~~~~ 277 (354)
T PF05631_consen 218 ENYGDTSSSSS-----------------LSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPAL-DP--DDEE 277 (354)
T ss_pred ccCCCcccccc-----------------hHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeecee-cC--CCCC
Confidence 66543221111 0111123346677889999999998888888877765 45544 32 1123
Q ss_pred chhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy10491 300 IKNGLISATPYIAMFITSSVLNYLADY 326 (520)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~g~l~dr 326 (520)
..-|++++.+.++.++|+.+..++..+
T Consensus 278 ~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 278 LPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 346999999999999999888765543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-14 Score=139.12 Aligned_cols=140 Identities=14% Similarity=0.023 Sum_probs=123.2
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~ 146 (520)
++++.+..+.+++.+.+.++..++.++.|++.||+|||+.+.++..+.+++.++..+.+..+. .+++..++.|++.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 312 (377)
T TIGR00890 233 QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGT 312 (377)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccc
Confidence 577888889999999999999999999999999999999999999998888887776642223 4556778889888888
Q ss_pred hhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHH
Q psy10491 147 VPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLI 210 (520)
Q Consensus 147 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~ 210 (520)
.+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+. .||++.|++.+++.++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 313 ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE---IGFEYTFIVTGAFALT 373 (377)
T ss_pred hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh---hchhhHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999999987 8999999988777665
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-13 Score=134.16 Aligned_cols=147 Identities=12% Similarity=0.154 Sum_probs=120.5
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~ 146 (520)
+++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+......+.+ +. .+++.+++.+++.+..
T Consensus 245 ~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~g~~ 322 (393)
T PRK15011 245 NELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAH--SPAILLGLQLLNAIYIGIL 322 (393)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH
Confidence 67889999999998888888888999999999999999988877766655544444443 45 7778899988887777
Q ss_pred hhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhc
Q psy10491 147 VPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYE 221 (520)
Q Consensus 147 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e 221 (520)
.+....+..|.+| ++|++++++++....+|..+++.+++.+.+. .||+..|++.+++.++ .++..++.||
T Consensus 323 ~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~---~g~~~~~~~~~~~~~~-~~~~~~~~~~ 392 (393)
T PRK15011 323 GGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEI---WNYHAVFWFALVMIIA-TLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHH-HHHHHHhhcC
Confidence 7777888899986 4699999999999999999999999999987 7999999988777776 4444445554
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=142.35 Aligned_cols=141 Identities=11% Similarity=0.021 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHh
Q psy10491 77 RGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILA 155 (520)
Q Consensus 77 ~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~ 155 (520)
..+...+..++..++.++.|+++||+|||++++++.++.+++.++.++.+ +. .+++.+++.|++.++.++...++++
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~--s~~~ll~~~~l~g~~~~~~~~~~~a~~a 674 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN--SESAMIALLCLFGGLSIAAWNALDVLTV 674 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677789999999999999999999999999999999999998885 55 7778888889888888999999999
Q ss_pred hhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10491 156 KWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPH 224 (520)
Q Consensus 156 ~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~ 224 (520)
|++|.++|++++|+..+...+|.++||++++.+... +...+|++.+++.++ ..+..+++||+..
T Consensus 675 El~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~----~~~~pf~i~a~~lll-~~ll~~~LPET~~ 738 (742)
T TIGR01299 675 ELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI----TKAAPILFASAALAC-GGLLALKLPDTRG 738 (742)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHH-HHHHHHhCCCCcc
Confidence 999999999999999999999999999999988774 456788887777766 4444556687653
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-13 Score=136.70 Aligned_cols=150 Identities=11% Similarity=0.100 Sum_probs=129.2
Q ss_pred CCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCch
Q psy10491 69 SKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIV 147 (520)
Q Consensus 69 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~ 147 (520)
+.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.++++ +. .+++.+++.|++.+...
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~l~g~~~~~~~ 333 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT--GPLEVSILKLLHAFEVPFLL 333 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHH
Confidence 3456777899999999999999999999999999999999999999999888888875 55 88889999999988877
Q ss_pred hhHHHHHhhhcCCCcchhHHHH-HHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCC
Q psy10491 148 PCTHAILAKWIPPGERSFLGGI-VYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENP 223 (520)
Q Consensus 148 ~~~~~~i~~~~~~~~rg~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~ 223 (520)
+....++.|.+|++.|+...+. ++....+|.++++++.|++.+. .|||..|++.+++.++..++.++.+++++
T Consensus 334 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~---~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 334 VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS---IGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 8888999999999999887665 6777889999999999999998 79999999988888776666666665544
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7e-13 Score=131.24 Aligned_cols=142 Identities=20% Similarity=0.242 Sum_probs=121.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHH
Q psy10491 76 ERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAIL 154 (520)
Q Consensus 76 ~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i 154 (520)
+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.+ +. .+++.+++.|++.+...+.....+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~~~~~~ 327 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP--SPWMALIGAALTGFGFSLVFPALGVEA 327 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456777888899999999999999999999999999888888888877774 55 777889999999998888888888
Q ss_pred hhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCC
Q psy10491 155 AKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENP 223 (520)
Q Consensus 155 ~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~ 223 (520)
.|.+|+++|+++.++++....+|..+++++.+.+.+. .||++.|++.+.+.++..++.+ .+++++
T Consensus 328 ~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~-~~~~~~ 392 (399)
T PRK05122 328 VKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW---FGYPSIFLAAALAALLGLALTW-LLYRRA 392 (399)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHH-Hhcccc
Confidence 9999999999999999999999999999999999887 7999999998888777544444 444433
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=129.29 Aligned_cols=176 Identities=14% Similarity=0.160 Sum_probs=132.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHH-Hhhccccccchhhh
Q psy10491 263 SGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYF-IRKKILSTGATRKL 341 (520)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~ 341 (520)
.+.++.+....+...+.++++..++|.|+++.+|+++.+++.+.........++.+++|+++||+ |||+.+
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i-------- 79 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV-------- 79 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH--------
Confidence 34566777777888889999999999999998999999999999999999999999999999999 999986
Q ss_pred hhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCC---cchhHHHHHHHHHhhHHhHHHHH
Q psy10491 342 MTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC---FAGILMSITNCSANVVGMLAPTI 418 (520)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~g~~~g~~~~~~~~g~~i~~~~ 418 (520)
.++.++..++.+.+.....................+...+....+..+.+|+ +|+++.++.+...++|+.++|.+
T Consensus 80 --liG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l 157 (493)
T PRK15462 80 --MLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIA 157 (493)
T ss_pred --HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHH
Confidence 4666666665544443221212222222222223344455556677787765 49999999999999999999999
Q ss_pred HHHhhccccccccchhHHHHHHHHHHHHHHHHHHHH
Q psy10491 419 SGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLL 454 (520)
Q Consensus 419 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (520)
.|++.+ ..+|+..|.+.++.++++.+..+.
T Consensus 158 ~g~L~~------~~Gw~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 158 CGYAQE------EYSWAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred HHHHHh------hhChHHHHHHHHHHHHHHHHHHHH
Confidence 999988 668999999887766666555544
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.2e-13 Score=131.94 Aligned_cols=147 Identities=14% Similarity=0.073 Sum_probs=120.5
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhccccCch
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIV 147 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~ 147 (520)
++.|.+..+.+++.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.+ +.+.+.+.-++.|++.+...
T Consensus 248 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~ 326 (406)
T PRK11551 248 VGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP-SFAGMLLAGFAAGLFVVGGQ 326 (406)
T ss_pred HhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHhHH
Confidence 56788999999999999999999999999999999999998887777777666666664 23366677788898888888
Q ss_pred hhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHH
Q psy10491 148 PCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIF 217 (520)
Q Consensus 148 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~ 217 (520)
+...+++.|.+|+++|++++|+.+....+|..+||.+++.+.++. .+|...+++.....++..++.++
T Consensus 327 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 327 SVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG--RSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred HHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC--CchHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999998862 35666666666555553443333
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=131.71 Aligned_cols=178 Identities=14% Similarity=0.132 Sum_probs=136.2
Q ss_pred cch-hHHHHHHHHHHHHHHHHHHHHHhHHHHHhh--cCCCcchhHHHHHhHHHHHHHHHHHHHHHHHH-HHhhccccccc
Q psy10491 262 KSG-PFLSILVAHMGQNFGYETLMTMLPTFLKEV--LHFDMIKNGLISATPYIAMFITSSVLNYLADY-FIRKKILSTGA 337 (520)
Q Consensus 262 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~ 337 (520)
++| .++.+.+..++..++++++..++|.|+++. +|++..+++.+.+...++..++.+++|+++|| +|||+.+
T Consensus 7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l---- 82 (475)
T TIGR00924 7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTM---- 82 (475)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHH----
Confidence 444 456666777777889999999999999886 89999999999999999999999999999999 8999987
Q ss_pred hhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCC----cchhHHHHHHHHHhhHHh
Q psy10491 338 TRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC----FAGILMSITNCSANVVGM 413 (520)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~g~~~g~~~~~~~~g~~ 413 (520)
.++..+..++.+.+...++.....+...+ .+.+.+...+.......+..|+ +|+++.++.+...++|.+
T Consensus 83 ------~~~~~~~~~g~~~~~~~~~~~~~~~~~~l-~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ 155 (475)
T TIGR00924 83 ------VLGGIVLMLGHFMLAMSIYPDLIFYGLGT-IAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSF 155 (475)
T ss_pred ------HHHHHHHHHHHHHHHhcccHhHHHHHHHH-HHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHH
Confidence 56666777776666654432222233333 3333455566666666666553 388899999999999999
Q ss_pred HHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 414 LAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 414 i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
+||.+.+++.+ ..+|+..|.+.++..+++.+..+..+
T Consensus 156 ig~~l~g~l~~------~~g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 156 ISPLLAGVIAE------NYGYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHHHHHHHHH------hcChHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999998 56899999998876666655554443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-12 Score=130.81 Aligned_cols=184 Identities=14% Similarity=0.124 Sum_probs=134.9
Q ss_pred chhhhccchh-HHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHH-HHhhccc
Q psy10491 256 PWGDIVKSGP-FLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADY-FIRKKIL 333 (520)
Q Consensus 256 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~ 333 (520)
-..+.+++|+ ++..+...++..++++++..+++.|+++.+|++..+++.+............+++|+++|| +|||+.+
T Consensus 12 ~~~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~ 91 (500)
T PRK09584 12 VSLNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVI 91 (500)
T ss_pred CChhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3355667774 8888888888889999999999999999899999988888777666666666789999999 5999887
Q ss_pred cccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc---chhHHHHHHHHHhh
Q psy10491 334 STGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF---AGILMSITNCSANV 410 (520)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~g~~~g~~~~~~~~ 410 (520)
..+..+..++.....+..+..........+.+.+.+...+.......+.+|++ ++.+.++.+...++
T Consensus 92 ----------~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~i 161 (500)
T PRK09584 92 ----------MLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINI 161 (500)
T ss_pred ----------HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHH
Confidence 46666666665555554333333333333333344555566666777777643 45678888999999
Q ss_pred HHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHh
Q psy10491 411 VGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLF 455 (520)
Q Consensus 411 g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (520)
|..++|.+.|++.+ ..+|+..|.+.++..+++.+..+..
T Consensus 162 G~~~gp~i~g~l~~------~~g~~~~F~i~~i~~~i~~i~~~~~ 200 (500)
T PRK09584 162 GSFFSMLATPWLAA------KYGWSVAFALSVVGMLITVVNFAFC 200 (500)
T ss_pred HHHHHHHHHHHHHH------hhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998 6689999999887666666544443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=128.16 Aligned_cols=147 Identities=14% Similarity=0.216 Sum_probs=120.9
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhccccCch
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIV 147 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~ 147 (520)
+++|.++.+.+++.+...+...++.++.|++.||+|||+.+.++.++..+..+...+.+ +.+.+++.+++.|++.+...
T Consensus 228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~ 306 (375)
T TIGR00899 228 HELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADN-SLWALLMLQLLNAIFIGILA 306 (375)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 67888999999998888888888899999999999999998888777666655555553 23377788999999988888
Q ss_pred hhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhh
Q psy10491 148 PCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVY 220 (520)
Q Consensus 148 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~ 220 (520)
+....++.|..|+ ++++++++++....+|..++|.+++.+.+. .||+..|++.+++.++..++ .++++
T Consensus 307 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~---~g~~~~~~~~~~~~~~~~~~-~~~~~ 374 (375)
T TIGR00899 307 GIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAER---WSYHAVYWFAIVMLIVALFC-LLLIK 374 (375)
T ss_pred HHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHH-Hheec
Confidence 8888999999865 667999999999999999999999999987 79999999988877764443 34343
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=129.75 Aligned_cols=144 Identities=15% Similarity=0.191 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhccccCchhhHHHHHh
Q psy10491 76 ERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILA 155 (520)
Q Consensus 76 ~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~ 155 (520)
..+++.+++.++..++.++.|++.||+|||+.+..+..+..++.+...+.+ +.+.+++.+++.|++.+...+...+++.
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 337 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ-TPLQLGILRFLLGAADGALLPAVQTLLV 337 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence 356777788888899999999999999999999999888888777776664 2337888999999999999999999999
Q ss_pred hhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCC
Q psy10491 156 KWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENP 223 (520)
Q Consensus 156 ~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~ 223 (520)
+..|+++||+.+++.+....+|..+||.+++.+.+. .||++.|++.+++.++..++.++..++++
T Consensus 338 ~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 402 (408)
T PRK09874 338 YNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN---YGFRAVFLVTAGVVLFNAVYSWNSLRRRR 402 (408)
T ss_pred HhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh---cchhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999987 89999999999888886666665554433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.5e-13 Score=129.65 Aligned_cols=173 Identities=14% Similarity=0.107 Sum_probs=130.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhh
Q psy10491 264 GPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMT 343 (520)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 343 (520)
+.++.+.+..++...+......++|.|+++.+|++..+.|+..+...++..+++++.|+++||+|+|+.+
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~---------- 76 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYM---------- 76 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH----------
Confidence 4577777888888888888999999999988999999999999999999999999999999999999876
Q ss_pred hhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHHhHHHHHHHHh
Q psy10491 344 SIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVGMLAPTISGLL 422 (520)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l 422 (520)
.++..+..++.+.+.+.++ .+..+....+.........+....+..+..|+ +|+++.|+.+...++|.+++|.+.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l 155 (395)
T PRK10054 77 LLAITAFASGFIAIPLVNN-VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLL 155 (395)
T ss_pred HHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555443 32222222222222233444455555666554 599999999999999999999999988
Q ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHH
Q psy10491 423 LNWFQHDEMLSWKVVFLVSAVLYITCATVYLL 454 (520)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (520)
.+ .+|+..|++.+++.+++.+...+
T Consensus 156 ~~-------~g~~~~f~~~~~~~~i~~i~~~~ 180 (395)
T PRK10054 156 VM-------QSINLPFWLAAICSAFPLVFIQI 180 (395)
T ss_pred HH-------hccCcHHHHHHHHHHHHHHHHHH
Confidence 76 36888898888777776554443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=127.99 Aligned_cols=139 Identities=21% Similarity=0.264 Sum_probs=121.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHH
Q psy10491 76 ERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAIL 154 (520)
Q Consensus 76 ~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i 154 (520)
+.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.+ +. .+++..++.|++.+...+...+.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~ 327 (392)
T PRK12382 250 MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP--TAWVALAGAALTGAGCSLIFPALGVEV 327 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 346667778888899999999999999999999999998888888877774 55 777889999999988888888899
Q ss_pred hhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHh
Q psy10491 155 AKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLV 219 (520)
Q Consensus 155 ~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~ 219 (520)
.|.+|+++||++.++++....+|..++|++.+.+.++ .||++.|.+.+.+.++..++.++..
T Consensus 328 ~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 328 VKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS---FGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCchHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998 8999999999888877555555443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.8e-13 Score=132.06 Aligned_cols=152 Identities=16% Similarity=0.106 Sum_probs=133.4
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~ 146 (520)
+.+|.+..+.|++.+.+.++..++.++.+++.||.++++.+..+.++.+++.++..+.+ ++ ...++.++.|++.+..
T Consensus 252 ~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~ 329 (417)
T PRK10489 252 EVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMP--MWILAVLCLALFGYLSAIS 329 (417)
T ss_pred hccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHHHHH
Confidence 44888999999999999999999999999999998888888888888888887777775 66 7788889999988877
Q ss_pred hhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10491 147 VPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPH 224 (520)
Q Consensus 147 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~ 224 (520)
.+...+++.|..|++.||+++|++.....+|..+|+.+.|.+.+. .|++..+++.+...++..++..+.+|+.++
T Consensus 330 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (417)
T PRK10489 330 SLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM---MTPVASASASGFGLLIIGVLLLLVLGELRR 404 (417)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH---hchhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 778889999999999999999999999999999999999999997 899999998888877767777777777654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.8e-13 Score=124.70 Aligned_cols=179 Identities=18% Similarity=0.203 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhh
Q psy10491 266 FLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSI 345 (520)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 345 (520)
+..+.+.+...++.--.+..-.|...++ .++|..+.|.+.+...+..-++..+.|.++||.+.|..+ .+
T Consensus 31 f~~~fiGYa~fYl~RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm----------~~ 99 (448)
T COG2271 31 FLSIFIGYAAFYLTRKNFNLAMPALIED-GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFM----------AF 99 (448)
T ss_pred HHHHHHHHHHHHHHHHhHhhccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceee----------hH
Confidence 4445555555555556676777777776 589999999999999999999999999999999999987 78
Q ss_pred hchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHH--HHh
Q psy10491 346 GEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTIS--GLL 422 (520)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~--g~l 422 (520)
+++++++..+++.+.+ +...+.++..+-+.+.+...|+....+..-+|++ ||+..++.|++.++|+++.|.+. +.+
T Consensus 100 gLilsai~nil~Gfs~-s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~ 178 (448)
T COG2271 100 GLILSAIVNILFGFSP-SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFF 178 (448)
T ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHH
Confidence 8999999998888776 4455555566666666666777766666666655 99999999999999999999999 888
Q ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q psy10491 423 LNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQY 462 (520)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (520)
.+ ..+|+.+|++-++++++..++.++..+.+.+.
T Consensus 179 ~~------~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs 212 (448)
T COG2271 179 AF------HGGWRAAFYFPGIIAIIVALILLFLLRDRPQS 212 (448)
T ss_pred Hh------ccchhHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 87 56999999999999988888777766555443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=126.49 Aligned_cols=158 Identities=22% Similarity=0.338 Sum_probs=138.9
Q ss_pred HHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcch-hHHHHHHHHHHHHHHHH
Q psy10491 45 YVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHK-MLAYGMVVNAVFALLVP 123 (520)
Q Consensus 45 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~-~l~~~~~~~~~~~~~~~ 123 (520)
......+....|.+.+ +.+|.+..+.+++.+...++..++.++.|++.||+|||+ .+..+..+..++.+...
T Consensus 188 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (352)
T cd06174 188 SFGYYGLLTYLPLYLQ-------EVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA 260 (352)
T ss_pred HhHHHHHHHHHHHHHH-------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3333444445555552 445889999999999999999999999999999999999 99999999999999988
Q ss_pred hHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHH
Q psy10491 124 VSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFY 202 (520)
Q Consensus 124 ~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~ 202 (520)
+.+ ++ .+++..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+. .+|++.|+
T Consensus 261 ~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~---~~~~~~~~ 335 (352)
T cd06174 261 LAP--SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT---GGYGGVFL 335 (352)
T ss_pred Hhc--cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCcchHHH
Confidence 885 56 8899999999999999999999999999999999999999999999999999999999987 89999999
Q ss_pred HHHHHHHHHHHH
Q psy10491 203 VFGVICLIWCVL 214 (520)
Q Consensus 203 i~~~~~~~~~~~ 214 (520)
+.+++.++..++
T Consensus 336 ~~~~~~~i~~i~ 347 (352)
T cd06174 336 ILAALALLAALL 347 (352)
T ss_pred HHHHHHHHHHHH
Confidence 998888875444
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=131.05 Aligned_cols=173 Identities=14% Similarity=0.124 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHH
Q psy10491 35 FMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVV 114 (520)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~ 114 (520)
..+++..++.+.....+..-.|...+ +++|.+..+.++..+.+.++..++.+++|+++||+|||+.+.....+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~p~yl~-------~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~ 333 (467)
T PRK09556 261 WLLCFANIFLYIVRIGIDNWSPVYAF-------QELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIAL 333 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 33444454444444444555565442 67899999999999999999999999999999999999887665544
Q ss_pred HHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHH-HHHHhhhhhhhhhcc-
Q psy10491 115 NAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQF-GTIISYPVSGYLAYG- 191 (520)
Q Consensus 115 ~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-G~~~g~~l~~~l~~~- 191 (520)
..++..+..+...++. .+.+.+++.|+..............|.+|+++||.+.|+.+...++ |..++|.+.|.+.+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~ 413 (467)
T PRK09556 334 ALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPT 413 (467)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccc
Confidence 4443322222212244 6667888888654443434446777999999999999999988886 779999999999881
Q ss_pred c--------cccCcchHHHHHHHHHHHHHHH
Q psy10491 192 T--------FLQGWPAIFYVFGVICLIWCVL 214 (520)
Q Consensus 192 ~--------~~~gwr~~f~i~~~~~~~~~~~ 214 (520)
. ...||+..|++.++..++..+.
T Consensus 414 ~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 444 (467)
T PRK09556 414 KNGTPIFGYTLTGWAGTFAALDIAAIGCICL 444 (467)
T ss_pred ccccccccccccChHHHHHHHHHHHHHHHHH
Confidence 0 0168999999887777664433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-12 Score=125.78 Aligned_cols=137 Identities=12% Similarity=0.039 Sum_probs=124.1
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~ 146 (520)
+++|.++.++|++.+...++..+..++.+++.||+|+|+.+.++.+..++..++.++++ ++ .+++.+++.|+..+..
T Consensus 233 ~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~q~l~g~~~~~~ 310 (382)
T TIGR00902 233 QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE--AFPLIFLLQILHCGTFAVC 310 (382)
T ss_pred HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh--hHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999998885 66 8888999999999999
Q ss_pred hhhHHHHHhhhcCCCcchhHHHHHH-HHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHH
Q psy10491 147 VPCTHAILAKWIPPGERSFLGGIVY-SGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIW 211 (520)
Q Consensus 147 ~~~~~~~i~~~~~~~~rg~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~ 211 (520)
.+....++.+. |+++|++..++++ ...++|.++|+.++|.+.++ .|+ ..|++.+.++++.
T Consensus 311 ~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~---~g~-~~~~~~~~~~~~~ 371 (382)
T TIGR00902 311 HLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT---LGA-GTFVFMAIIAAAA 371 (382)
T ss_pred HHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccH-HHHHHHHHHHHHH
Confidence 99999999998 8999999999986 57789999999999999998 786 6677777777653
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.8e-12 Score=123.19 Aligned_cols=154 Identities=13% Similarity=0.040 Sum_probs=123.1
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhccccCch
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIV 147 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~ 147 (520)
+++|.+..+.|+..+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+.+...+. -++.|++.+...
T Consensus 233 ~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~g~g~g~~~ 310 (393)
T PRK09705 233 IEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVCGLGLGGAF 310 (393)
T ss_pred HHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHHHHhccchH
Confidence 457899999999999999999999999999999999999999888887777665554432222222 245688888888
Q ss_pred hhHHHHHhhhcC-CCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy10491 148 PCTHAILAKWIP-PGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHS 225 (520)
Q Consensus 148 ~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~ 225 (520)
+.......+..+ +++|++..++.+....++..++|.+.+++.+.. .+|...|++.+..+++..+...++.||++.+
T Consensus 311 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 311 PLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS--GNYLMDWAFHALCVVGLMIITLRFAPARFPQ 387 (393)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 887777777775 568999999999999999999999999999872 3588888888887777666667777776543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.6e-12 Score=123.84 Aligned_cols=137 Identities=16% Similarity=0.203 Sum_probs=116.0
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhccccCch
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIV 147 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~ 147 (520)
++.|.+..+.+++.+.+.++..+++++.|++.||+|+|+.+..+..+..++.+... . ........++.|++.....
T Consensus 228 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~--~~~~~~~~~l~g~~~~~~~ 303 (381)
T PRK03633 228 NHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S--QAAMAPALFILGAAGFTLY 303 (381)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h--hHHHHHHHHHHHHHHHhHH
Confidence 45688999999999999999999999999999999999999888888777665442 2 3333456677788777788
Q ss_pred hhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHH
Q psy10491 148 PCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIW 211 (520)
Q Consensus 148 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~ 211 (520)
|...+.+.|..|+++++...+.+....++|.++||.++|++.++ .+|++.|++.+.+.++.
T Consensus 304 p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~---~g~~~~f~~~~~~~l~~ 364 (381)
T PRK03633 304 PVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN---YSDNLLFIMIASVSFIY 364 (381)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccHHHHHHHHHHHHH
Confidence 99999999999888888888888899999999999999999998 89999999987777653
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.8e-12 Score=124.17 Aligned_cols=146 Identities=18% Similarity=0.122 Sum_probs=119.1
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHH-HhHhhhHH-HHHHHHHHHhccccC
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLV-PVSSQSIW-CLAAVRFIQGMGEGP 145 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~-~~~~~~~~-~l~~~r~l~G~g~~~ 145 (520)
+++|.+..+.+++.+.+.++..++.++.|+++||+|||+.. .+..+..++.... ...+ +. .+++..++.|++.+.
T Consensus 234 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~g~~~~~ 310 (390)
T PRK03545 234 QVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAAN--SEWHLSVLSIFWGIAIMC 310 (390)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHhc
Confidence 56788999999999999999999999999999999988654 4444444444333 3332 55 777889999999877
Q ss_pred chhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhh
Q psy10491 146 IVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVY 220 (520)
Q Consensus 146 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~ 220 (520)
..+...+.+.+..| ++|++++|+++....+|..+||+++|.+.++ .|++..|++.+.+.++..+..++..+
T Consensus 311 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 311 IGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH---LGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred chHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 77778888888875 6889999999999999999999999999998 89999999999888876666555543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=130.53 Aligned_cols=141 Identities=20% Similarity=0.258 Sum_probs=116.1
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhccc--CcchhHHH--HHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhcc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNH--DSHKMLAY--GMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMG 142 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~--Grr~~l~~--~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g 142 (520)
+++|.+..+.+++.++..++..++.++.|+++||. ++|+...+ +.++.+++.++..+.+ ++ .+++.+++.|++
T Consensus 269 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~~~~i~~~~~G~~ 346 (455)
T TIGR00892 269 KDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAG--DYTGLVIYCIFFGLS 346 (455)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999984 34443333 3344445555555554 55 888899999999
Q ss_pred ccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHH
Q psy10491 143 EGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWC 212 (520)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~ 212 (520)
.+...+...+++.|.+|++++++.+++++....+|..+||++++.+.+.. .+|++.|++.+++.++..
T Consensus 347 ~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~--g~~~~~f~~~~~~~li~~ 414 (455)
T TIGR00892 347 FGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT--KNYKYIFYASGSIVVSAG 414 (455)
T ss_pred hchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc--CCcchHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998861 369999999888766643
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.8e-12 Score=125.59 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=121.6
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~ 146 (520)
+++|++..+.+++.+.+.++..++.++.|+++||++||+.+.....+..+...+....+ +. .+.+..++.|++.+..
T Consensus 234 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~G~~~~~~ 311 (394)
T PRK03699 234 KKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTD--DPSHLLYAILGLGFFSSAI 311 (394)
T ss_pred HHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999998888777777666665553 44 6666788899988878
Q ss_pred hhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhc
Q psy10491 147 VPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYE 221 (520)
Q Consensus 147 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e 221 (520)
++...++..|..| +++++..+.......+|..++|.+.+++.+. .||+..+++.+++.++..++ ...+++
T Consensus 312 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~-~~~~~~ 381 (394)
T PRK03699 312 YTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAH---FGLQAALLTANGLYAVVFVM-CILLGF 381 (394)
T ss_pred HHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH---hCchhhhhhhHHHHHHHHHH-HHHHHH
Confidence 8888888888774 5578888999999999999999999999997 89999999888887775443 333443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-12 Score=131.37 Aligned_cols=140 Identities=11% Similarity=0.083 Sum_probs=111.9
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~ 146 (520)
+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.++.......++ .+.+..++.++.....
T Consensus 304 ~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (496)
T PRK03893 304 TDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGI 383 (496)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhccc
Confidence 588999999999999999999999999999999999999988887777666554443322233 4445555544433344
Q ss_pred hhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHH
Q psy10491 147 VPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLI 210 (520)
Q Consensus 147 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~ 210 (520)
.+....++.|.+|+++|++++++......+|..+||.+++.+.+. .||+..+...+....+
T Consensus 384 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~---~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 384 SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR---LDLGTALASLSFSLTF 444 (496)
T ss_pred chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc---CChHHHHHHHHHHHHH
Confidence 567778999999999999999999999999999999999999998 8999888665554433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-12 Score=130.79 Aligned_cols=163 Identities=12% Similarity=0.033 Sum_probs=126.5
Q ss_pred hheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHh---h
Q psy10491 51 MSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSS---Q 127 (520)
Q Consensus 51 ~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~---~ 127 (520)
+....|.+. +++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++.++.. .
T Consensus 303 ~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (481)
T TIGR00879 303 IMYYSPTIF--------ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFV 374 (481)
T ss_pred hHHHHHHHH--------HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344455565 67788888889999999999999999999999999999999999888888777766210 1
Q ss_pred h------HH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchH
Q psy10491 128 S------IW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAI 200 (520)
Q Consensus 128 ~------~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~ 200 (520)
+ .+ .+....++.+.......+....++.|.+|+++|++++++......+|.++++.+.+.+.+. .+|++.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~---~~~~~~ 451 (481)
T TIGR00879 375 TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES---IGVGGV 451 (481)
T ss_pred CCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCccce
Confidence 1 23 3333333333322334566777889999999999999999999999999999999999887 799999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC
Q psy10491 201 FYVFGVICLIWCVLFIFLVYENPH 224 (520)
Q Consensus 201 f~i~~~~~~~~~~~~~~~~~e~~~ 224 (520)
|++.++++++..++..++.||+++
T Consensus 452 f~~~~~~~~~~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 452 FIFFGGLNVLGLIFVYFFLPETKG 475 (481)
T ss_pred ehhHHHHHHHHHHHHheecccCCC
Confidence 999998888877777666776543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.7e-12 Score=125.91 Aligned_cols=170 Identities=16% Similarity=0.186 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhh
Q psy10491 266 FLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSI 345 (520)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 345 (520)
++..++..++.++....+..++|.+.++ +|+++.+.+++.+...++..++.++.|++.||+|+|+.+ .+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~----------~~ 93 (434)
T PRK11663 25 LITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFM----------GI 93 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhH----------HH
Confidence 3344455555555555677788888877 799999999999999999999999999999999999886 56
Q ss_pred hchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 346 GEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
+.++..++.+...+.++ .+......++.+...+...+....+..+..|+ +|++++|+.+....+|..++|.+.+.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~-~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 172 (434)
T PRK11663 94 GLIATGIINILFGFSSS-LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL 172 (434)
T ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666555443 33333333333333444556666666777775 49999999999999999999999999988
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHH
Q psy10491 425 WFQHDEMLSWKVVFLVSAVLYITCATVYL 453 (520)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (520)
..+|+..|.+.+++.++..+...
T Consensus 173 ------~~gw~~~f~~~~i~~~~~~~~~~ 195 (434)
T PRK11663 173 ------HYGWRYGMMIAGIIAIVVGLFLC 195 (434)
T ss_pred ------cccHHHHHHHHHHHHHHHHHHHH
Confidence 56899999888876665544333
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=129.33 Aligned_cols=160 Identities=14% Similarity=0.082 Sum_probs=119.5
Q ss_pred HHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHH
Q psy10491 40 GMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFA 119 (520)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~ 119 (520)
..+.............|.+.+ +++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 299 (394)
T TIGR00883 227 LVIATTTTFYLITTYLPTYLT-------QTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLA 299 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 333333333344444555542 5778899999999999999999999999999999999998776554444333
Q ss_pred --HHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHH-HHHHhHHHHHHhhhhhhhhhcccccc
Q psy10491 120 --LLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGI-VYSGAQFGTIISYPVSGYLAYGTFLQ 195 (520)
Q Consensus 120 --~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~~ 195 (520)
+...+...++. .+++..++.|++.+...+...+++.|.+|+++|++++++ .+....+|..++|.+++.+.++ .
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~---~ 376 (394)
T TIGR00883 300 VPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM---T 376 (394)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH---c
Confidence 22222211244 667778899998888899999999999999999999998 4566678999999999999987 5
Q ss_pred C-cchHHHHHHHHHH
Q psy10491 196 G-WPAIFYVFGVICL 209 (520)
Q Consensus 196 g-wr~~f~i~~~~~~ 209 (520)
| |++.++......+
T Consensus 377 g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 377 GDWYAIGYYLAALAL 391 (394)
T ss_pred CcchhHHHHHHHHHH
Confidence 6 8888777655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-10 Score=110.43 Aligned_cols=332 Identities=11% Similarity=0.035 Sum_probs=214.4
Q ss_pred CCCCCChhhhH-HHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccC
Q psy10491 68 DSKSWSTVERG-LLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGP 145 (520)
Q Consensus 68 ~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~ 145 (520)
.+.|++..|+. -+.-+..-.+....++...+.|..+.|++++++.+...+...+..+.+ +. .+-+..++-|++.+.
T Consensus 33 ~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~--sv~~mq~~q~~yg~~~a~ 110 (412)
T PF01770_consen 33 PDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT--SVLAMQLMQFFYGLATAA 110 (412)
T ss_pred CccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHHH
Confidence 44788888874 556677777888999999999999999999999999888888888886 77 999999999999764
Q ss_pred chhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy10491 146 IVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHS 225 (520)
Q Consensus 146 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~ 225 (520)
..+-++++-...|+++-.++.+...++.-+|..++.++|..+.... ..+++..+++...... .+++..+++|..++.
T Consensus 111 -evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~-~~sy~~L~~isl~~~~-~a~~~~~fLP~~~~S 187 (412)
T PF01770_consen 111 -EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFG-GVSYFQLNYISLASVS-LALLIALFLPMPKRS 187 (412)
T ss_pred -HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHH-HHHHHHHHcCCCCcc
Confidence 6778899999999999999999999999999999999999888741 1455555555443333 355666778876543
Q ss_pred CCCCChH---HH-HHHH----hhccCCc--cccccc----c-------CccchhhhccchhHHHHHHHHHHHHHHHHHHH
Q psy10491 226 DKRVSVE---EK-EYIL----YSIFGGD--IIEDLK----A-------SSIPWGDIVKSGPFLSILVAHMGQNFGYETLM 284 (520)
Q Consensus 226 ~~~~~~~---~~-~~~~----~~~~~~~--~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (520)
.--.+.. +. .+.. .+..+.. ..+... . -...+++..++|.++...+.+.+...++..+.
T Consensus 188 ~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~ 267 (412)
T PF01770_consen 188 LFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVI 267 (412)
T ss_pred cceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHH
Confidence 2111100 00 0000 0000000 000000 0 01233445678899999999999999998888
Q ss_pred HHhHHHHHhh--cCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCC
Q psy10491 285 TMLPTFLKEV--LHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGF 362 (520)
Q Consensus 285 ~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (520)
+|.....++. -+-+....|.+-+...+.+.++.+..|++..++.+..-+. .....++.+..++.+.+..
T Consensus 268 nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~--------l~~~S~l~a~~L~lm~~t~- 338 (412)
T PF01770_consen 268 NYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELA--------LGVFSLLQAGLLFLMSFTG- 338 (412)
T ss_pred HHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHH--------HHHHHHHHHHHHHHHHHhh-
Confidence 8887777665 2334445688888888888889999999855555533321 1233333344444444444
Q ss_pred ChHHHHHHHH-HHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHh
Q psy10491 363 THTPTIVCLI-LAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGM 413 (520)
Q Consensus 363 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~ 413 (520)
+.+...+..+ +.............-+...+..+.-|..+|+..++.-+-..
T Consensus 339 ~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQt 390 (412)
T PF01770_consen 339 NIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQT 390 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHH
Confidence 3344433333 33333333333333333445555578888876655444443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-12 Score=122.69 Aligned_cols=169 Identities=23% Similarity=0.374 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchh
Q psy10491 270 LVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYG 349 (520)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 349 (520)
.+..++..+........+|.++.+.+|.++.+.+++.+...++..++.++.|+++||+|||+.+ ..+..+
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l----------~~~~~~ 71 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVL----------IIGLLL 71 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHH----------HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeE----------eehhhh
Confidence 3455666666667777788566666899999999999999999999999999999999999976 566666
Q ss_pred hhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHHhHHHHHHHHhhccccc
Q psy10491 350 PGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVGMLAPTISGLLLNWFQH 428 (520)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~ 428 (520)
..++.....+.. +.+..+...++.+.+.+...+....+..+..|+ +|++++|+.+....+|..++|.+.+.+.+
T Consensus 72 ~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---- 146 (352)
T PF07690_consen 72 FALGSLLLAFAS-NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS---- 146 (352)
T ss_dssp HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred hhhHHHHhhhhh-hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh----
Confidence 666633333333 334455555555555567777777778887777 59999999999999999999999999998
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHh
Q psy10491 429 DEMLSWKVVFLVSAVLYITCATVYLLF 455 (520)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (520)
..+|+..|++.+++.++..++...+
T Consensus 147 --~~~~~~~~~~~~~~~~~~~il~~~~ 171 (352)
T PF07690_consen 147 --YFGWRWAFLISAILSLIAAILFILF 171 (352)
T ss_dssp --HCHHCCHHHHHHHHHHHHHHHHHCC
T ss_pred --ccccccccccccchhhhhhhhHhhh
Confidence 6689999999999888887754333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.6e-12 Score=123.16 Aligned_cols=166 Identities=16% Similarity=0.122 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh--HH------
Q psy10491 38 FIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM--LA------ 109 (520)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~--l~------ 109 (520)
++..+........+....|.... +++|.+..+.+++.+...++..++.++.|+++||+|||+. ..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 221 ALGQFLVNIGLGFFLTWFPTYLV-------QERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH-------HHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHH
Confidence 33444444444444445555542 5688899999999999999999999999999999999961 11
Q ss_pred HHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhh
Q psy10491 110 YGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYL 188 (520)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l 188 (520)
.+.++..+........+ +. ..+....+.+++.+ ..+...+++.|.+|+++|++++++.+....+|..++|.+.+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l 370 (399)
T TIGR00893 294 IAGLVLSLLMFATNYVN--IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAI 370 (399)
T ss_pred HHHHHHHHHHHHhccch--hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhh
Confidence 11111111111111121 33 44444455555544 7899999999999999999999999999999999999999999
Q ss_pred hccccccC-cchHHHHHHHHHHHHHHHHH
Q psy10491 189 AYGTFLQG-WPAIFYVFGVICLIWCVLFI 216 (520)
Q Consensus 189 ~~~~~~~g-wr~~f~i~~~~~~~~~~~~~ 216 (520)
.+. .| |+..|++.++..++..+..+
T Consensus 371 ~~~---~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 371 AAT---TGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred ccC---CCchhHHHHHHHHHHHHHHHHHH
Confidence 987 67 99999988887777554443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-11 Score=122.59 Aligned_cols=176 Identities=15% Similarity=0.185 Sum_probs=134.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHH-HHhhccccccchhhhh
Q psy10491 264 GPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADY-FIRKKILSTGATRKLM 342 (520)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~ 342 (520)
+.++.++...+...++++++..+++.|+++.+|++..+++++...+.....+..+++|+++|| +|||+.+
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~--------- 84 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI--------- 84 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH---------
Confidence 456777777888889999999999999999999999999988888888888888899999999 9999997
Q ss_pred hhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc---chhHHHHHHHHHhhHHhHHHHHH
Q psy10491 343 TSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF---AGILMSITNCSANVVGMLAPTIS 419 (520)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~g~~~g~~~~~~~~g~~i~~~~~ 419 (520)
..+.++..++.+...+..+..........+...+.+...+.......+.+|++ |+.++++.+...++|.+++|.+.
T Consensus 85 -~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~ 163 (489)
T PRK10207 85 -VLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLA 163 (489)
T ss_pred -HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHH
Confidence 56666666666665554433333323333334445666666677777777654 47789999999999999999999
Q ss_pred HHhhccccccccchhHHHHHHHHHHHHHHHHHHHHh
Q psy10491 420 GLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLF 455 (520)
Q Consensus 420 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (520)
|++.+ ..+|+..|++.++..+++.+.....
T Consensus 164 g~l~~------~~gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 164 PVIAD------KFGYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HHHHH------hhChHHHHHHHHHHHHHHHHHHHHc
Confidence 99998 5689999988766555555544444
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=121.10 Aligned_cols=170 Identities=14% Similarity=0.111 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhh
Q psy10491 267 LSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIG 346 (520)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 346 (520)
+.+....++...+.+....+++.|+++.+|+|+.+.|+..+...+...+..++.|+++||+++|+.+ ..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l----------~~~ 82 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMI----------VTG 82 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHH----------HHH
Confidence 4555777777888888889999999888899999999999999999999999999999999999887 566
Q ss_pred chhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCC-CcchhHHHHHHHHHhhHHhHHHHHHHHhhcc
Q psy10491 347 EYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISP-CFAGILMSITNCSANVVGMLAPTISGLLLNW 425 (520)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 425 (520)
..+..++.+.....+ +.+......++.+...+...+.......+..| ++|+++.|+.+...++|..+||.+.|.+.+
T Consensus 83 ~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~- 160 (400)
T PRK11646 83 MLMRAAGFATMAIAH-EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ- 160 (400)
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 666666666665544 33333333333333334445555565666654 459999999999999999999999999986
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHH
Q psy10491 426 FQHDEMLSWKVVFLVSAVLYITCATVYLL 454 (520)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (520)
.+|+..|++.+++.++..++...
T Consensus 161 ------~g~~~~f~~~~~~~~~~~i~~~~ 183 (400)
T PRK11646 161 ------YDFRLVCATGAVLFVLAAAFNAW 183 (400)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 48899998888777666554433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=123.50 Aligned_cols=153 Identities=13% Similarity=0.079 Sum_probs=112.5
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhH--hhhHH-HHHHHHHHHhcccc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVS--SQSIW-CLAAVRFIQGMGEG 144 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~-~l~~~r~l~G~g~~ 144 (520)
+++|.+......+.....+...++.++.|+++||+|||+++..+.++..++.+..... ..+.. .+++..++.|++.+
T Consensus 279 ~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 358 (438)
T PRK09952 279 QNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHD 358 (438)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 5678787766666666677778889999999999999999888877665554433322 11234 44556677788888
Q ss_pred CchhhHHHHHhhhcCCCcchhHHHHHH-HHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcC
Q psy10491 145 PIVPCTHAILAKWIPPGERSFLGGIVY-SGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYEN 222 (520)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~rg~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~ 222 (520)
...+...+++.|.+|.+.|+.+.++.. .+..+|..++|.+.+++.+..+ .+|+..+...++..++..+. .+.++|+
T Consensus 359 ~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~~i~~v~-~~~~~~~ 435 (438)
T PRK09952 359 MVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSWHSVAIYLLAGCLISAMT-ALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHH-HHHcccc
Confidence 888888999999999999999988854 4455899999999999987421 35888888877777764444 4455654
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.7e-12 Score=121.74 Aligned_cols=172 Identities=15% Similarity=0.145 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhc
Q psy10491 268 SILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGE 347 (520)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 347 (520)
.+....++..++.......+|.|..+ .+.++.+.+++.+...++..++.++.|+++||+|||+.+ ..+.
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~----------~~~~ 71 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVM----------IGAD 71 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHH----------HHHH
Confidence 34566666777777777888888887 589999999999999999999999999999999999987 3444
Q ss_pred hhhhhhhhhhhccC----CChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHh
Q psy10491 348 YGPGLMFIIPVILG----FTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLL 422 (520)
Q Consensus 348 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l 422 (520)
.+..++........ .+.+......++.+...+...+....+..+..|++ |+++.|+.+....+|..++|.+.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l 151 (365)
T TIGR00900 72 LIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLM 151 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44333333333222 13334444444444455666667777777877765 99999999999999999999999999
Q ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 423 LNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
.+ ..+|+..|++.++..+++.+..+..+
T Consensus 152 ~~------~~g~~~~~~~~~~~~~~~~~~~~~~~ 179 (365)
T TIGR00900 152 YA------TLGIKWAIWVDAVGFAISALLIVSVR 179 (365)
T ss_pred HH------HhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88 56899999888777666655554443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-11 Score=113.50 Aligned_cols=171 Identities=15% Similarity=0.161 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHH
Q psy10491 36 MLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVN 115 (520)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~ 115 (520)
.+....+........++.+-|.+. +..|.+.+.++++.-+|.++..++..+.|+++|| +.|+.+.....+.
T Consensus 216 ~l~~t~l~~~g~F~~ftYi~P~L~--------~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~ 286 (394)
T COG2814 216 GLLATFLFMTGHFALYTYIRPFLE--------SVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLL 286 (394)
T ss_pred HHHHHHHHHcchhhhHHhHHHHHH--------HccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHH
Confidence 333334444445566777778888 7889999999999999999999999999999999 9999999998888
Q ss_pred HHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccc
Q psy10491 116 AVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFL 194 (520)
Q Consensus 116 ~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 194 (520)
++..+...+.. ++. ..++.-++.|+..+.........+++ ..|+.+..+.++....+++|..+|..+||.+.++
T Consensus 287 a~~~l~l~~~~-~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~--- 361 (394)
T COG2814 287 ALALLALTFTG-ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA--- 361 (394)
T ss_pred HHHHHHHHHhc-chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 88888887774 344 66666777888776665555566666 4478999999999999999999999999999998
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHhh
Q psy10491 195 QGWPAIFYVFGVICLIWCVLFIFLVY 220 (520)
Q Consensus 195 ~gwr~~f~i~~~~~~~~~~~~~~~~~ 220 (520)
.|+....++.+++.++..++.++..+
T Consensus 362 ~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 362 LGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999988886655555433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-11 Score=118.65 Aligned_cols=177 Identities=14% Similarity=0.145 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhh
Q psy10491 265 PFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTS 344 (520)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 344 (520)
.++...+..+........+..+.|.++++.+|+|+.+.+++.+...++..++.++.|+++||+|||+.+ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~----------~ 71 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTT----------T 71 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHH----------H
Confidence 456677777777778888888999878778999999999999999999999999999999999999987 4
Q ss_pred hhchhhhhhhhhhhccC-CChHHHHHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHHhHHHHHHHHh
Q psy10491 345 IGEYGPGLMFIIPVILG-FTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVGMLAPTISGLL 422 (520)
Q Consensus 345 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l 422 (520)
++.++..++.+...+.+ +.....+..++.+.+ .+. ......+..+..|+ +|+++.++.....++|..+++.+.+.+
T Consensus 72 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l 149 (366)
T TIGR00886 72 LSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI 149 (366)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-chh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 66666666666665554 322233333333333 232 33344555666665 599999999988888888888887776
Q ss_pred hcccc----ccccchhHHHH-HHHHHHHHHHHHHHH
Q psy10491 423 LNWFQ----HDEMLSWKVVF-LVSAVLYITCATVYL 453 (520)
Q Consensus 423 ~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~ 453 (520)
.+... .....+|+..+ ...+++..+..++.+
T Consensus 150 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 185 (366)
T TIGR00886 150 IGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIF 185 (366)
T ss_pred HHHHHhcccccccccccchhHHHHHHHHHHHHHHHH
Confidence 65210 01134788888 433444444333333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-10 Score=116.25 Aligned_cols=150 Identities=13% Similarity=0.179 Sum_probs=117.1
Q ss_pred CCCCCChhhhHHHHH-HHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHH---HhHhhhHH-HHHHHHHHHhcc
Q psy10491 68 DSKSWSTVERGLLLS-SFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLV---PVSSQSIW-CLAAVRFIQGMG 142 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s-~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~-~l~~~r~l~G~g 142 (520)
+++|.+..+.+++.+ ...++..++.++.|+++||+|+|+.+.++.++.+++.++. +.. .++. .+.+.-+++.+.
T Consensus 251 ~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-~~~~~~l~~~~~l~~~~ 329 (491)
T PRK11010 251 RGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT-DKNLYSMGAAVFFENLC 329 (491)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 578999999999975 6668999999999999999999998877666555544332 222 1234 555566666666
Q ss_pred ccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcC
Q psy10491 143 EGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYEN 222 (520)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~ 222 (520)
.+...+...++..+..+++.+++..++.+...++|..+++++.|.+.+. .||+..|.+.++++++..++. ..++++
T Consensus 330 ~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~---~G~~~~f~~~~~~~l~~l~~~-~~~~~~ 405 (491)
T PRK11010 330 GGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA---HGWPTFYLFSVAAAVPGLLLL-LVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHH-HHHHhc
Confidence 5666677789999999999999999999999999999999999999997 799999999888887744444 444544
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=120.88 Aligned_cols=163 Identities=12% Similarity=0.172 Sum_probs=121.5
Q ss_pred HHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHH-HHHHHHHHHH
Q psy10491 41 MANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLA-YGMVVNAVFA 119 (520)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~-~~~~~~~~~~ 119 (520)
.+........+....|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.
T Consensus 231 ~~~~~~~~~~~~~~~p~~~--------~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~ 302 (402)
T TIGR00897 231 RIINTIGLFGFAVFLPMFV--------AELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFT 302 (402)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 3333333344444556666 678999999999999999999999999999999999998764 3344444443
Q ss_pred HHHHhHh---hhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcccccc
Q psy10491 120 LLVPVSS---QSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQ 195 (520)
Q Consensus 120 ~~~~~~~---~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~ 195 (520)
+...+.+ .++. .+++..++.|++.+...+ ....+.|.. +++||+++|+.+....+|..++|.+++.+.+. .
T Consensus 303 ~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~---~ 377 (402)
T TIGR00897 303 LALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF---F 377 (402)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---c
Confidence 3333221 1134 667788888988876544 456677765 56899999999999999999999999999998 8
Q ss_pred CcchHHHHHHHHHHHHHHHHH
Q psy10491 196 GWPAIFYVFGVICLIWCVLFI 216 (520)
Q Consensus 196 gwr~~f~i~~~~~~~~~~~~~ 216 (520)
||+..|++.+++.++..++..
T Consensus 378 g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 378 GAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 999999999888777554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.2e-12 Score=124.34 Aligned_cols=164 Identities=15% Similarity=0.234 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhh
Q psy10491 273 HMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGL 352 (520)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 352 (520)
.+.............|.+.++ +|.++.+.+++.+...++..++.++.|++.||+|||+.+ ..+..+..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~----------~~~~~~~~~ 94 (398)
T TIGR00895 26 MLMDGYDLAAMGFAAPAISAE-WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVL----------LWSILLFSV 94 (398)
T ss_pred HHHHHHHHHHHHhhHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHH----------HHHHHHHHH
Confidence 333333444555566666655 799999999999999999999999999999999999876 455555555
Q ss_pred hhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhcccccccc
Q psy10491 353 MFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEM 431 (520)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~ 431 (520)
+.......++ .+...+..++.+.+.+...+....+..+..|++ |++++|+.+....+|..+++.+.+.+.+ .
T Consensus 95 ~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------~ 167 (398)
T TIGR00895 95 FTLLCALATN-VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP------V 167 (398)
T ss_pred HHHHHHHccc-hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh------c
Confidence 5555554443 333333334444444566667777778877765 9999999999999999999999999988 5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q psy10491 432 LSWKVVFLVSAVLYITCATVYLL 454 (520)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~ 454 (520)
.+|+..+++.+++.++..++.+.
T Consensus 168 ~g~~~~~~~~~~~~~~~~~~~~~ 190 (398)
T TIGR00895 168 FGWRSLFYVGGIAPLLLLLLLMR 190 (398)
T ss_pred ccceeehhhhhhHHHHHHHHHHH
Confidence 68888888876555555444433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=123.78 Aligned_cols=154 Identities=8% Similarity=-0.056 Sum_probs=118.4
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhH---HHHHHHHHHHhcccc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSI---WCLAAVRFIQGMGEG 144 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---~~l~~~r~l~G~g~~ 144 (520)
++.|.+....++......+...++.++.|+++||+|||+.++.+..+.+++.++.+.....+ +....+-++.+++.+
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (479)
T PRK10077 299 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA 378 (479)
T ss_pred HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 56777777777777788888999999999999999999999999999988888776542111 123333344444433
Q ss_pred C-chhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhh------ccccccCcchHHHHHHHHHHHHHHHHHH
Q psy10491 145 P-IVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLA------YGTFLQGWPAIFYVFGVICLIWCVLFIF 217 (520)
Q Consensus 145 ~-~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~------~~~~~~gwr~~f~i~~~~~~~~~~~~~~ 217 (520)
. ..+....+++|.+|+++|++++|+......+|.++++.+.+.+. +. .+|++.|++.++++++..++.++
T Consensus 379 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 455 (479)
T PRK10077 379 MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAH---FHNGFSYWIYGCMGVLAALFMWK 455 (479)
T ss_pred ccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhh---ccCccHHHHHHHHHHHHHHHHHh
Confidence 3 23677899999999999999999999999999998876665444 34 78999999988888887777777
Q ss_pred HhhcCCC
Q psy10491 218 LVYENPH 224 (520)
Q Consensus 218 ~~~e~~~ 224 (520)
+.||+++
T Consensus 456 ~~~e~~~ 462 (479)
T PRK10077 456 FVPETKG 462 (479)
T ss_pred ccccCCC
Confidence 7777654
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-11 Score=119.66 Aligned_cols=176 Identities=14% Similarity=0.105 Sum_probs=121.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhh
Q psy10491 263 SGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLM 342 (520)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 342 (520)
+|.+|.+....++.+.+...+..++|.|+++.+|.++.+.+.+.+...++..+++++.|+++||+|||+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~-------- 72 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLL-------- 72 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH--------
Confidence 578899999999999999999999999999888999999999999999999999999999999999999872
Q ss_pred hhhhchhhhhhhh---hhhccCC---ChH-HHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHH
Q psy10491 343 TSIGEYGPGLMFI---IPVILGF---THT-PTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLA 415 (520)
Q Consensus 343 ~~~~~~~~~~~~~---~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~ 415 (520)
.+.....+... .+...+. ... ......+..........+....+..+..+ +++...|......++|.+++
T Consensus 73 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~g 149 (396)
T TIGR00882 73 --WIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR-NSNFEYGKARMFGCVGWALC 149 (396)
T ss_pred --HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh-hcccccchhhhhcccHHHHH
Confidence 22222221111 1111110 011 11111112222223333444434334322 34567788888889999999
Q ss_pred HHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 416 PTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 416 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
|.+.|.+.+ .+|+..|++.+++.++..++.+...
T Consensus 150 ~~~~g~l~~-------~~~~~~f~~~~~~~~~~~~~~~~~~ 183 (396)
T TIGR00882 150 ASIAGILFS-------IDPQIVFWLGSGFALILMLLLMFAK 183 (396)
T ss_pred HHHHhhhhc-------cCchHHHHHHHHHHHHHHHHHHHhC
Confidence 999998876 4788899888887777766555443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=121.61 Aligned_cols=166 Identities=19% Similarity=0.175 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhh
Q psy10491 274 MGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLM 353 (520)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (520)
+..+.....+....|.+. +.+|++..+.+++.+...++..++.++.|+++||+|||+.+ ..+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~----------~~~~~~~~~~ 73 (379)
T TIGR00881 5 AAYYLVRKNFALAMPYLV-EEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFL----------PIGLILCAIV 73 (379)
T ss_pred hHHHHhHHhhhhhhHHHH-HHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehh----------HHHHHHHHHH
Confidence 344445556666667554 45799999999999999999999999999999999999987 5666666666
Q ss_pred hhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHH-HHHHhhcccccccc
Q psy10491 354 FIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPT-ISGLLLNWFQHDEM 431 (520)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~-~~g~l~~~~~~~~~ 431 (520)
.+...+.. +.+...+..++.+...+...+....+..+..|++ |+++.|+.+....+|..++|. +.+.+.+ .
T Consensus 74 ~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~ 146 (379)
T TIGR00881 74 NLFFGFST-SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE------L 146 (379)
T ss_pred HHHHHHhh-hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh------c
Confidence 66665554 3334444444444445666677777777777765 999999999999999999994 5555555 5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 432 LSWKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
.+|+..|++.+++.++..++.+...+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T TIGR00881 147 YSWHWVFIVPGIIAIIVSLICFLLLR 172 (379)
T ss_pred CCchhHHHHHHHHHHHHHHHHheeeC
Confidence 68888888888777665555544433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.6e-11 Score=119.00 Aligned_cols=169 Identities=10% Similarity=0.097 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhh
Q psy10491 276 QNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFI 355 (520)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (520)
.....+....+.|.+. +.+|++..+.+++.+...++..++.++.|+++||+|+|+.+ ..+.++..++.+
T Consensus 48 ~~~~~~~~~~~~~~l~-~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~----------~~~~~~~~~~~~ 116 (476)
T PLN00028 48 CFVSTFAAAPLLPIIR-DNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGS----------AFLLMLTAPAVF 116 (476)
T ss_pred HHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH----------HHHHHHHHHHHH
Confidence 3333344444555554 45799999999998888999999999999999999999876 455555555555
Q ss_pred hhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHHhHHHHHHHHhhcccc---cccc
Q psy10491 356 IPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVGMLAPTISGLLLNWFQ---HDEM 431 (520)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~---~~~~ 431 (520)
...+..+.....+..++.+.+. +...+ ......+..|+ +||.++|+.+...++|+.+++.+.+.+..... ....
T Consensus 117 ~~~~~~s~~~l~~~r~l~G~~~-~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 194 (476)
T PLN00028 117 CMSLVSSATGFIAVRFFIGFSL-ATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSF 194 (476)
T ss_pred HHHHhcCHHHHHHHHHHHHHHH-HhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 5555443333333333444333 22222 33345566665 59999999998888888888777765543110 0112
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 432 LSWKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
.+|+..|++.+++.++..+..+++.+
T Consensus 195 ~gWr~~f~i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 195 TAWRIAFFVPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 48999999998888777666665543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-11 Score=119.83 Aligned_cols=176 Identities=17% Similarity=0.166 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhh
Q psy10491 265 PFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTS 344 (520)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 344 (520)
.++...+...........+....|. +++ .|.++.+.++..+...++..++.++.|++.||+|||+.+ .
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~p~-~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~----------~ 95 (438)
T TIGR00712 28 VFLGIFFGYAAYYLVRKNFALAMPY-LVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL----------P 95 (438)
T ss_pred HHHHHHHHHHHHHHHhccHHhhhHH-HHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceeh----------H
Confidence 3344444444444444444555554 455 499999999999999999999999999999999999876 4
Q ss_pred hhchhhhhhhhhhhccC---CChHHHHHHHHHHHHHhhccccccceeeccCCC-CcchhHHHHHHHHHhhHHhHHHHHHH
Q psy10491 345 IGEYGPGLMFIIPVILG---FTHTPTIVCLILAMACNGGIYAGFKVNHIDISP-CFAGILMSITNCSANVVGMLAPTISG 420 (520)
Q Consensus 345 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g 420 (520)
.+..+..++.+.....+ ++........++.+...+...+.......+..| ++|++++|+.+....+++.+++.+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~ 175 (438)
T TIGR00712 96 AGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVL 175 (438)
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence 55555555544443322 122222222233333334444545555556665 45999999999999999999998887
Q ss_pred HhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 421 LLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 421 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
...+ ...+|+..|++.+++.++..++.+++.+
T Consensus 176 ~~~~-----~~~~w~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 176 LGMA-----WFNDWHAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred HHHH-----HhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6554 1358999999988887776555444433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-11 Score=120.54 Aligned_cols=172 Identities=12% Similarity=0.080 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhccc--CcchhH-HHHHH
Q psy10491 37 LFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNH--DSHKML-AYGMV 113 (520)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~--Grr~~l-~~~~~ 113 (520)
.++..++............|.+.+ ++.|.+..+.+++...+.++..++.++.|+++||+ |||+.. .....
T Consensus 258 ~~l~~~~~~~~~~~~~~~~P~~l~-------~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~ 330 (452)
T PRK11273 258 IAIANVFVYLLRYGILDWSPTYLK-------EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT 330 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 333333333333444556666663 56788989999999999999999999999999999 555432 22233
Q ss_pred HHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHH-Hhhhhhhhhhcc
Q psy10491 114 VNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTI-ISYPVSGYLAYG 191 (520)
Q Consensus 114 ~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~-~g~~l~~~l~~~ 191 (520)
+..++.++..+...++. ..++..++.|.+..........+..|.+|+++||+++|+.+....+|.. .+|.+.+.+.++
T Consensus 331 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~ 410 (452)
T PRK11273 331 LVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 410 (452)
T ss_pred HHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 33333333322211133 4445555556543333334445678999999999999999988888765 579999999988
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHH
Q psy10491 192 TFLQGWPAIFYVFGVICLIWCVLFIFL 218 (520)
Q Consensus 192 ~~~~gwr~~f~i~~~~~~~~~~~~~~~ 218 (520)
.||+..|++.+..+++..+....+
T Consensus 411 ---~g~~~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 411 ---FGWDGGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred ---hcchHHHHHHHHHHHHHHHHHHHH
Confidence 799999998888777755544433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6e-11 Score=120.18 Aligned_cols=175 Identities=17% Similarity=0.185 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhh
Q psy10491 264 GPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMT 343 (520)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 343 (520)
+.+|.+.+..++.......+..++|.+.++ +|.++.+.+++.+...++..++.++.|+++||+|||+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~---------- 78 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIF---------- 78 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH----------
Confidence 457777788888888888888899999987 699999999999999999999999999999999999886
Q ss_pred hhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHh
Q psy10491 344 SIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLL 422 (520)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l 422 (520)
..+..+..++.+...+.+ +.+..+...++.+.+.+...+.......+..|++ ++++.|+.+...++|..++|.+.|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l 157 (471)
T PRK10504 79 FTAIVLFTLGSLFCALSG-TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLL 157 (471)
T ss_pred HHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344444544444444443 3333333333333334445555566666666655 99999999999999999999999999
Q ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 423 LNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
.+ ..+|+..|.+...+..++.++.....
T Consensus 158 ~~------~~gw~~~f~~~~~~~~l~~~~~~~~~ 185 (471)
T PRK10504 158 VE------YASWHWIFLINIPVGIIGAIATLMLM 185 (471)
T ss_pred Hh------hccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98 56899999988877776666555443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=118.80 Aligned_cols=174 Identities=14% Similarity=0.121 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhh
Q psy10491 266 FLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSI 345 (520)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 345 (520)
+..+++..+....-...+..-+|.+.++ +|.+..+.+++.+.+.++..++.++.|+++||+|||+.+ ..
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l----------~~ 76 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLL----------ML 76 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH----------HH
Confidence 3445555566666666677788888776 699999999999999999999999999999999999987 56
Q ss_pred hchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceee-ccCCC-CcchhHHHHHHHHHhhHHhHHHHHHHHhh
Q psy10491 346 GEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNH-IDISP-CFAGILMSITNCSANVVGMLAPTISGLLL 423 (520)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 423 (520)
+..+..++.+.....++.....+.-.+.+.+. +...+...... .+..| ++|++++|+......+|..+||.+.|.+.
T Consensus 77 ~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~-~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~ 155 (495)
T PRK14995 77 GGTLFGLASLAAAFSPTASWLIATRALLAIGA-AMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL 155 (495)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666666666665554333333334444443 33444333333 44444 55999999999999999999999999999
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 424 NWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
+ ..+|++.|++...+.++..++.+...+
T Consensus 156 ~------~~gwr~~f~i~~~~~~~~~~l~~~~l~ 183 (495)
T PRK14995 156 E------HFYWGSVFLINVPIVLVVMGLTARYVP 183 (495)
T ss_pred c------cCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9 679999999988777776665555443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.1e-11 Score=118.03 Aligned_cols=170 Identities=14% Similarity=0.121 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhch
Q psy10491 269 ILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEY 348 (520)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 348 (520)
+....+............+|.+.++ +|.++.+.+++.+...++..++.++.|++.||+|||+.+ ..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~----------~~~~~ 78 (385)
T TIGR00710 10 LGCLSILGPLGIDMYLPAFPEIAAD-LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVL----------LLGLF 78 (385)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH----------HHHHH
Confidence 3333344444555555667766655 699999999999999999999999999999999999887 45555
Q ss_pred hhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhcccc
Q psy10491 349 GPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQ 427 (520)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~ 427 (520)
+..++.+...+.++ .+......++.+...+...+....+..|..|++ |+++.|+.+....+|..++|.+.+.+.+
T Consensus 79 ~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~--- 154 (385)
T TIGR00710 79 IFALSSLGLALSNN-IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV--- 154 (385)
T ss_pred HHHHHHHHHHHHcc-HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 65666655555443 333333333333344445556666677777655 9999999999999999999999999988
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 428 HDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
..+|+..+++.+++.++..+..++..
T Consensus 155 ---~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (385)
T TIGR00710 155 ---WLSWHAIFAFLSLAGILLSALIFFIL 180 (385)
T ss_pred ---HcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56899999888877777666555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.3e-11 Score=117.04 Aligned_cols=171 Identities=11% Similarity=0.116 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhh
Q psy10491 266 FLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSI 345 (520)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 345 (520)
+....+..+...+.........|.+.++ +|.++.+.+++.+...++..++.++.|++.||+|||+.+ ..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~----------~~ 82 (405)
T TIGR00891 14 FSAAWLGWLLDAFDFFLVALVLAEVAGE-FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPM----------VT 82 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH----------HH
Confidence 4455555666666666666667766544 799999999999999999999999999999999999987 45
Q ss_pred hchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 346 GEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
+..+..++.+...+.++ .+......++.+.+.+...+....+..+..|+ +|+++.|+.+....+|..+++.+.+.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~-~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 161 (405)
T TIGR00891 83 SIVLFSAGTLACGFAPG-YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP 161 (405)
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555443 33333333443344455555566666666665 49999999999999999999999998887
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHH
Q psy10491 425 WFQHDEMLSWKVVFLVSAVLYITCATVY 452 (520)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (520)
.. ..+|+..|++.++..++..+..
T Consensus 162 ~~----~~~w~~~f~~~~~~~~~~~~~~ 185 (405)
T TIGR00891 162 VW----GDGWRALFFISILPIIFALWLR 185 (405)
T ss_pred hc----CccHHHHHHHHHHHHHHHHHHH
Confidence 21 1248888887665555544433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.1e-11 Score=119.04 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=100.0
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~ 146 (520)
++.|.++.+.+.+.+.+.++..++.++.|++.||+|||+.+..+.++..+..+.....+.+.+ .+.+..+..+++..+.
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (426)
T PRK12307 259 AGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGV 338 (426)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccH
Confidence 456888899999999999999999999999999999999998888777666555443321223 2222233333333334
Q ss_pred hhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchH
Q psy10491 147 VPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAI 200 (520)
Q Consensus 147 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~ 200 (520)
.+....++.|.+|+++||+++|+......+|..++|.+.+++.+. .|+...
T Consensus 339 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~---~g~~~~ 389 (426)
T PRK12307 339 GGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT---MGLGAA 389 (426)
T ss_pred hHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc---ccHHHH
Confidence 556678889999999999999999999999999999999999887 666543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=114.72 Aligned_cols=136 Identities=17% Similarity=0.121 Sum_probs=115.7
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~ 146 (520)
++.|.+..+.|++.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.++.+ +. .+++..++.|++.+..
T Consensus 233 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~ 310 (382)
T PRK11128 233 QAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT--ALPWLIVIQILHCGTFTVC 310 (382)
T ss_pred HHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999988888777774 55 7888999999999988
Q ss_pred hhhHHHHHhhhcCCCcchhHHHHHH-HHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHH
Q psy10491 147 VPCTHAILAKWIPPGERSFLGGIVY-SGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLI 210 (520)
Q Consensus 147 ~~~~~~~i~~~~~~~~rg~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~ 210 (520)
.+....++.+. +++++++..+..+ ...++|..+||.++|.+.+. .|+ ..|+..+.+.++
T Consensus 311 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~---~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 311 HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH---LGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccH-HHHHHHHHHHHH
Confidence 89989998887 5667789999886 55678889999999999998 677 466666655544
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=114.46 Aligned_cols=153 Identities=12% Similarity=0.140 Sum_probs=115.5
Q ss_pred HHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccC
Q psy10491 282 TLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILG 361 (520)
Q Consensus 282 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (520)
.....+|.+.++ +|+++.+.++..+...++..+++++.|++.||+|||+.+ ..+..+..++.+...+.+
T Consensus 38 ~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~----------~~~~~~~~~~~~~~~~~~ 106 (394)
T PRK10213 38 LPVSLLTPMAQD-LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVV----------ILFAVLLTLSCLLVSFAN 106 (394)
T ss_pred HHHhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHH----------HHHHHHHHHHHHHHHHHC
Confidence 444467776665 699999999999999999999999999999999999987 466666666666555543
Q ss_pred CChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHH
Q psy10491 362 FTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLV 440 (520)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~ 440 (520)
+.+..++.-++.+...+...+....+..+..|++ |+.+.++.....+++..++|.+.+.+.+ ..+|+..|++
T Consensus 107 -~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~------~~gw~~~f~~ 179 (394)
T PRK10213 107 -SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE------LIGWRNVFNA 179 (394)
T ss_pred -hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hcCHHHHHHH
Confidence 3344444333434444445566666667777655 9999999999999999999999999998 5689999998
Q ss_pred HHHHHHHHHHHH
Q psy10491 441 SAVLYITCATVY 452 (520)
Q Consensus 441 ~~~~~~~~~~~~ 452 (520)
.+++.+++.+..
T Consensus 180 ~~~l~~~~~l~~ 191 (394)
T PRK10213 180 AAVMGVLCIFWI 191 (394)
T ss_pred HHHHHHHHHHHH
Confidence 877666554433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.4e-11 Score=115.74 Aligned_cols=173 Identities=14% Similarity=0.092 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhh
Q psy10491 266 FLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSI 345 (520)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 345 (520)
+....+..+....+.......+|.+.++ +|.+..+.++..+...++..++.++.|+++||+|||+.+ ..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l----------~~ 73 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVA----------IP 73 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHH----------HH
Confidence 3344444555555656666778887776 699999999999999999999999999999999999876 45
Q ss_pred hchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 346 GEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
+..+..++.......++........++.+ ...+...+.......+..|+ +|+++.|+.+....++..++|.+.+.+.+
T Consensus 74 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~g-~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~ 152 (392)
T PRK10473 74 GAALFIIASLLCSLAETSSLFLAGRFLQG-IGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML 152 (392)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555566555554443222233333333 33334444555566666654 59999999999999999999999988877
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 425 WFQHDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
..+|+..+++.+++.++..++.+...
T Consensus 153 ------~~g~~~~~~~~~~~~~i~~~~~~~~~ 178 (392)
T PRK10473 153 ------KFPWQSLFYTMAAMGILVLLLSLFIL 178 (392)
T ss_pred ------CcChHHHHHHHHHHHHHHHHHHHHHc
Confidence 56899999998887777666554443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=114.74 Aligned_cols=172 Identities=13% Similarity=0.125 Sum_probs=129.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhh
Q psy10491 264 GPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMT 343 (520)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 343 (520)
+.++.+.+..+............+|.+.++ +|++..+.+++.+...++..++.++.|++.||+|||+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~---------- 71 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHIL---------- 71 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHH----------
Confidence 456667777777777777777888887666 699999999999999999999999999999999999987
Q ss_pred hhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHh
Q psy10491 344 SIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLL 422 (520)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l 422 (520)
..+..+.+++.+...+.++.....+..++.+. +.+...+.......+..|++ |++++|+......++..++|.+.+.+
T Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l 150 (382)
T PRK10091 72 LFLVALCVIGNAMFTLSSSYLMLAIGRLVSGF-PHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYL 150 (382)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 56666666776666665543333333333333 33333444455566666654 99999999999999999999999998
Q ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy10491 423 LNWFQHDEMLSWKVVFLVSAVLYITCATVYL 453 (520)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (520)
.+ ..+|+..|.+.+++.++..+..+
T Consensus 151 ~~------~~gwr~~f~~~~~~~~~~~~~~~ 175 (382)
T PRK10091 151 SQ------EFSWRYTFLLIAVFNIAVLASIY 175 (382)
T ss_pred hh------hccHHHHHHHHHHHHHHHHHHHH
Confidence 88 56899999998887766655443
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=111.95 Aligned_cols=182 Identities=12% Similarity=0.047 Sum_probs=137.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccch
Q psy10491 259 DIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGAT 338 (520)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~ 338 (520)
+++.+++...+.+......++...+.+++=-++++. +-.+..-|......-.+.++.-++.+++.+|+|+-+++
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~-~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~----- 439 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDL-GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVM----- 439 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeehhhhhccchHHHHHHHHHHHHHhccccee-----
Confidence 456777777777777777777777777777777775 66667778777778888888999999999999999987
Q ss_pred hhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHH-HhhHHhHHH
Q psy10491 339 RKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCS-ANVVGMLAP 416 (520)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~-~~~g~~i~~ 416 (520)
..++.+..+=++.+.+.. ++|..+.+=++-+...+..+....++++.+.|.+ ++++.|+.... ..+|-.+|.
T Consensus 440 -----~lgLa~~~~Rf~~~S~L~-n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gs 513 (618)
T KOG3762|consen 440 -----YLGLACNVGRFLYYSYLQ-NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGS 513 (618)
T ss_pred -----eehhhHHHHHHHHHHHhc-CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhh
Confidence 566666666666666555 4455555555555566777788888888887776 99999998765 468889999
Q ss_pred HHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy10491 417 TISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSG 458 (520)
Q Consensus 417 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (520)
.++|.+.+ ..+-+..|..+++.+++..+....+.+.
T Consensus 514 lIGG~~v~------~fg~~ttf~~~giAcl~~l~~~~~iq~~ 549 (618)
T KOG3762|consen 514 LIGGFVVE------RFGARTTFRIFGIACLVTLALFISIQLL 549 (618)
T ss_pred hhhhhhhe------eehhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999998 6688888888887777766666555443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.8e-11 Score=118.37 Aligned_cols=153 Identities=18% Similarity=0.193 Sum_probs=134.7
Q ss_pred hheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH
Q psy10491 51 MSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW 130 (520)
Q Consensus 51 ~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 130 (520)
+..++|.+.. +.+|.+....|++.+++.+|..+++++.+++.+|+++++.+..+.++++++.+..++++ +.|
T Consensus 237 ~~aLlPl~a~-------~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~-~~~ 308 (524)
T PF05977_consen 237 VWALLPLFAR-------DVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP-SFW 308 (524)
T ss_pred HHHhhhHHHH-------HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch-HHH
Confidence 3445777764 67899999999999999999999999999999999999999999999999999999985 334
Q ss_pred HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHH
Q psy10491 131 CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLI 210 (520)
Q Consensus 131 ~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~ 210 (520)
..++.-++.|++.....+...+.+.+..|++.||++++++.+....+..+|..+.|.+.+. .|-+..+.+.++..++
T Consensus 309 ~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~---~g~~~al~~a~~~lll 385 (524)
T PF05977_consen 309 LALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH---FGVRTALLIAGAALLL 385 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHH
Confidence 7778889999999988888899999999999999999999999999999999999999998 8999998887765555
Q ss_pred HHHH
Q psy10491 211 WCVL 214 (520)
Q Consensus 211 ~~~~ 214 (520)
..++
T Consensus 386 ~~~~ 389 (524)
T PF05977_consen 386 SALI 389 (524)
T ss_pred HHHH
Confidence 4443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=114.52 Aligned_cols=170 Identities=15% Similarity=0.116 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHhHHH--HHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhch
Q psy10491 271 VAHMGQNFGYETLMTMLPTF--LKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEY 348 (520)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~--~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 348 (520)
+..+.....+.....+.|.+ +++.+|.++.+.+++.+...++..++.++.|+++||+|||+.+ ..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~----------~~~~~ 79 (401)
T PRK11043 10 YLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVL----------LAGLS 79 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHH----------HHHHH
Confidence 33333334444444555544 4455799999999999999999999999999999999999986 45555
Q ss_pred hhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhcccc
Q psy10491 349 GPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQ 427 (520)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~ 427 (520)
+..++.+...+.++.....+..++.+.+. +...+.......+..|++ ++...+..+....++..++|.+.+.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~--- 155 (401)
T PRK11043 80 LFALGSLGMLWVESAAQLLVLRFVQAVGV-CSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN--- 155 (401)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 55555555554443222332233333222 222333344455666655 8888888888899999999999999998
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 428 HDEMLSWKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
..+|+..|++.+++.++..++.+..++
T Consensus 156 ---~~g~~~~~~~~~~~~~~~~~~~~~~~~ 182 (401)
T PRK11043 156 ---HFGWQAIFATLFAITLLLILPTLRLKP 182 (401)
T ss_pred ---cCChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 568999999888877777666555443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-10 Score=119.07 Aligned_cols=173 Identities=16% Similarity=0.222 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhh
Q psy10491 267 LSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIG 346 (520)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 346 (520)
..+++..+.............|.+.++ +|.++.+.+++.+...++..++.++.|++.||+|||+.+ ..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~----------~~~ 73 (485)
T TIGR00711 5 IVLMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLF----------LIS 73 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHH----------HHH
Confidence 344555555556666666778887766 699999999999999999999999999999999999987 466
Q ss_pred chhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHHhHHHHHHHHhhcc
Q psy10491 347 EYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVGMLAPTISGLLLNW 425 (520)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 425 (520)
..+..++.+.....++. ...+...++.+...+...+....+..+..|+ +|+++.++......+|..++|.+.+++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~- 151 (485)
T TIGR00711 74 TFAFTLGSLLCGVAPNL-ELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE- 151 (485)
T ss_pred HHHHHHHHHHHhCcCCH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc-
Confidence 66666666666555433 3333333443444455566666777777765 49999999999999999999999999988
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 426 FQHDEMLSWKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
..+|+..|++.+.+.++..++.++..+
T Consensus 152 -----~~~w~~~f~~~~~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 152 -----NYHWRWIFLINVPIGIIVVVVAFFILP 178 (485)
T ss_pred -----CcCceehhhhhhHHHHHHHHHHHHHcC
Confidence 678999998888777766665554433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-10 Score=113.86 Aligned_cols=176 Identities=11% Similarity=0.081 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhc
Q psy10491 268 SILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGE 347 (520)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 347 (520)
...+.+++...-........| .+++.+|++..+.+++.+...++..++.++.|++.||+|||+.+ ..+.
T Consensus 12 ~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~----------~~~~ 80 (412)
T TIGR02332 12 FLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWI----------AGIM 80 (412)
T ss_pred HHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHH----------HHHH
Confidence 333444444444444444555 56666899999999999999999999999999999999999987 5666
Q ss_pred hhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccc
Q psy10491 348 YGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWF 426 (520)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 426 (520)
++..++.....+.++.......-++.+. ..+...+....+..+..|++ |++++|+.+....+|..+++.+.+++.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (412)
T TIGR02332 81 VLWGIASTATMFATGPESLYLLRILVGI-AEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD 159 (412)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6666666666665543333333344443 34445566666677877764 999999999999999999999999887410
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHh
Q psy10491 427 QHDEMLSWKVVFLVSAVLYITCATVYLLF 455 (520)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (520)
......+|+..|++.++..++..++.+++
T Consensus 160 ~~~~~~gwr~~f~~~~~~~l~~~~~~~~~ 188 (412)
T TIGR02332 160 GLMALKGWQWLFLLEGFPSVILGVMTWFW 188 (412)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhc
Confidence 00123589999999887776655544444
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=116.80 Aligned_cols=118 Identities=11% Similarity=0.071 Sum_probs=102.6
Q ss_pred ChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHH
Q psy10491 73 STVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTH 151 (520)
Q Consensus 73 s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~ 151 (520)
+..+.+++.+...++..++.+++++++||+|+|+++.++.++.+++.++..+.+ ++. .+++..++.|++.+...+...
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~ 333 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG-SNLPLILVLIILAGFGQNFVTGLVW 333 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999999999999999999999999999988888887776653 344 777788899999999999999
Q ss_pred HHHhhhcC-------CCcchhHHHHHHHHhHHHHHHhhhhhhhhhcc
Q psy10491 152 AILAKWIP-------PGERSFLGGIVYSGAQFGTIISYPVSGYLAYG 191 (520)
Q Consensus 152 ~~i~~~~~-------~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~ 191 (520)
++++|..+ ++++|.+.|+.+....+|..+++.+.+.+.+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 334 ALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred HHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999875 45679999999999999999999999999876
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-10 Score=111.84 Aligned_cols=161 Identities=11% Similarity=0.008 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhh
Q psy10491 277 NFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFII 356 (520)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (520)
......+...+|.+.++ +|.|+.+.|++.+...++..++.+..|++.||+|||+.+ .........+...
T Consensus 4 ~~~~~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~----------~~~~~~~~~~~~~ 72 (368)
T TIGR00903 4 QAIWVTFSPVLSLVAED-IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFL----------FGSLATFAAAAGR 72 (368)
T ss_pred hHHHHHHHhhHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH----------HHHHHHHHHHHHH
Confidence 34555666777777766 799999999999999999999999999999999988764 2222222222211
Q ss_pred hhccCCChHHHHH-HHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhH
Q psy10491 357 PVILGFTHTPTIV-CLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWK 435 (520)
Q Consensus 357 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~ 435 (520)
. ....+...... -++.+.+ .+...+.........++++|++++++.+....+|..+++.+.+.+.+ ..+|+
T Consensus 73 ~-~~~~~~~~l~~~R~l~G~g-~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~------~~gWr 144 (368)
T TIGR00903 73 L-LDPFNYEWLLACQLLAALG-QPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT------AGGLQ 144 (368)
T ss_pred H-HHhccHHHHHHHHHHHHhH-hHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------ccchH
Confidence 1 22123333333 3333333 23333233333334445569999999999999999999999999988 67999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy10491 436 VVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~ 456 (520)
..|++.+++.++..++.++..
T Consensus 145 ~~f~~~~~l~~~~~~~~~~~l 165 (368)
T TIGR00903 145 LLIIPIAAVAAAGIILVLAAL 165 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 999998887777665555443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-10 Score=113.05 Aligned_cols=172 Identities=16% Similarity=0.129 Sum_probs=121.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhh
Q psy10491 263 SGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLM 342 (520)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 342 (520)
+|+++.+.+..++..++........+...++ ++.++.+.+++.+.+.+...+..++.|+++||++||+.+
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl--------- 71 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKE-LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVM--------- 71 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhh---------
Confidence 3567777777777777666565666666555 688888899999999999999999999999999999987
Q ss_pred hhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHH
Q psy10491 343 TSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGL 421 (520)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~ 421 (520)
..+..+..++.+......+ . .. ..++.+...+...|....+..+..|++ |+++.|+.+....++..+||.++|.
T Consensus 72 -~~~~~~~~~~~~~~~~~~~-~--~~-~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~ 146 (393)
T PRK11195 72 -FIANGIKLLGCLLMLFGIH-P--LL-AYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGA 146 (393)
T ss_pred -HHHHHHHHHHHHHHHHHHH-H--HH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333222221 1 22 223334445667777788888877765 9999999999999999999999999
Q ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 422 LLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
+.+ . .+...+.+.+.+.+++.+....++
T Consensus 147 l~~------~-~~~~~~~i~~~~~~~~~~~~~~l~ 174 (393)
T PRK11195 147 LAD------P-HAEAALAVCALIYLLAALFNLFIP 174 (393)
T ss_pred HHH------H-HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 998 2 366666666555544444433333
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-09 Score=103.32 Aligned_cols=313 Identities=13% Similarity=0.008 Sum_probs=189.9
Q ss_pred HHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhccccCchhhHHHHHhhhcCC
Q psy10491 81 LSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPP 160 (520)
Q Consensus 81 ~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~ 160 (520)
.++-+....++.++.+.+.|+.|.|+.+.++........+..-+.. .|.++..-.+.|+|.+..+.....+++|..++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N--~y~~yfssallG~Gaallw~GqG~ylt~~st~ 133 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN--SYYLYFSSALLGFGAALLWTGQGGYLTSNSTR 133 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc--hHHHHHHHHHhhhhHHheecccceehhhcCCh
Confidence 6677788889999999999999999999999999988777665543 77999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHhHHHHHHhhhhhhhhhccccc-----cCcc-hHH----------HHHHHHHHHHH--HHHHHHhhcC
Q psy10491 161 GERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFL-----QGWP-AIF----------YVFGVICLIWC--VLFIFLVYEN 222 (520)
Q Consensus 161 ~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~-----~gwr-~~f----------~i~~~~~~~~~--~~~~~~~~e~ 222 (520)
+.+.+..++..+....+.++|..+-..+....+. .+-+ ..+ .+.+++..+.. +....++|.+
T Consensus 134 ~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~ 213 (461)
T KOG3098|consen 134 ETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSK 213 (461)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCcc
Confidence 9999999999999999998887766554433110 1111 111 11111111100 0111111111
Q ss_pred CCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhh--cCCCc-
Q psy10491 223 PHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEV--LHFDM- 299 (520)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~- 299 (520)
... .+++.. + +...+......+++++|+...+....+..++....+....|..+.-. .+.+.
T Consensus 214 ~~~------~~~~~~-~--------~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~ 278 (461)
T KOG3098|consen 214 DVV------NCKSSS-E--------TSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTT 278 (461)
T ss_pred chh------hhhhhc-c--------ccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcch
Confidence 100 000000 0 01111112234566788888777777766665555555556554332 23222
Q ss_pred chhHHHHHhHHHHHHHHHHHHHHHHHHHH---hhccccccchhhhhhhhhchhhhhhhhhhh-ccCCC------------
Q psy10491 300 IKNGLISATPYIAMFITSSVLNYLADYFI---RKKILSTGATRKLMTSIGEYGPGLMFIIPV-ILGFT------------ 363 (520)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------ 363 (520)
...++.....+++.+++....+.+.+|.. ++..+ .++..+..+..++.. ..+.+
T Consensus 279 ~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~----------~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~ 348 (461)
T KOG3098|consen 279 YLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTV----------LIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLL 348 (461)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcch----------hHHHHHHHHHHHHHhccccccCCCCCCcccccc
Confidence 22344455566777777777777776654 44443 333333333322221 11111
Q ss_pred ----hHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHH
Q psy10491 364 ----HTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISG 420 (520)
Q Consensus 364 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g 420 (520)
.....++.++.+..-.......+.....+.|++|..+.++.-.-+.++.+++-....
T Consensus 349 ~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 349 FTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred cccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 123333333444444556666677778888999999999888888887776665553
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-10 Score=116.44 Aligned_cols=142 Identities=18% Similarity=0.092 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhh--hHH-HHHHHHHHHhccccCchhhHHHHHhhhc
Q psy10491 82 SSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQ--SIW-CLAAVRFIQGMGEGPIVPCTHAILAKWI 158 (520)
Q Consensus 82 s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~ 158 (520)
.+..++..++.++.++++||+|||++++++..+.+++..+.++... +.. .+...-+...++..+..+....+.+|.+
T Consensus 342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 421 (502)
T TIGR00887 342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF 421 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence 3445566678889999999999999998888887777766655421 011 1111111122222223456677889999
Q ss_pred CCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcccc-------ccCcchHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10491 159 PPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTF-------LQGWPAIFYVFGVICLIWCVLFIFLVYENPH 224 (520)
Q Consensus 159 ~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-------~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~ 224 (520)
|.+.|++++++.+....+|.++++.+.+.+.+... ..++...|++.+++.++..+ ..+++||++.
T Consensus 422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i-~~~~lpEt~~ 493 (502)
T TIGR00887 422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL-FTLLIPETKG 493 (502)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH-HheEeccCCC
Confidence 99999999999999999999999999998887410 13456678888877776444 4567788654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-10 Score=111.79 Aligned_cols=139 Identities=14% Similarity=0.023 Sum_probs=99.4
Q ss_pred hhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHH-HHh-Hhh
Q psy10491 50 NMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALL-VPV-SSQ 127 (520)
Q Consensus 50 ~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~-~~~-~~~ 127 (520)
.+....|.+.+ +.+|.+..+.++....+.++..++.++.|+++||+|||+.+..+..+..+.... ... ...
T Consensus 256 ~~~~~~p~~l~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 328 (434)
T PRK15075 256 LITVYTPTFGK-------TVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAA 328 (434)
T ss_pred HHHHHHHHHHH-------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444566552 457889999999999999999999999999999999999987765544332221 111 111
Q ss_pred hHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHH-HhHHHHHHhhhhhhhhhccccccCcc
Q psy10491 128 SIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYS-GAQFGTIISYPVSGYLAYGTFLQGWP 198 (520)
Q Consensus 128 ~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~-~~~~G~~~g~~l~~~l~~~~~~~gwr 198 (520)
.++ .+.+..++.|++.+...+....++.|.+|+++|+.++++... +..++..++|.+.+.+.+. .|++
T Consensus 329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~---~g~~ 398 (434)
T PRK15075 329 PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV---TGDK 398 (434)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh---cCCc
Confidence 133 444455666666666666677889999999999999998644 4445577899999999887 5654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.5e-10 Score=110.28 Aligned_cols=150 Identities=14% Similarity=0.113 Sum_probs=118.3
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHh---hhHH-HHHHHHHHHhccc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSS---QSIW-CLAAVRFIQGMGE 143 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~-~l~~~r~l~G~g~ 143 (520)
+++|.++.+.++......++..++.++.|+++||+|+|+.+.++..+..++.++..+.+ .+++ ++++.-++.|++.
T Consensus 244 ~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 323 (406)
T PRK15402 244 SGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGI 323 (406)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence 56888999999998888889999999999999999999999999888877777776542 1245 7788889999998
Q ss_pred cCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhc
Q psy10491 144 GPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYE 221 (520)
Q Consensus 144 ~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e 221 (520)
+...+......... ++++||++.+..+....+|..+|+.+++.+.+. .+|....+..++..++..++...++++
T Consensus 324 ~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK15402 324 GLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG---GGNGLFNLFNLANGLLWLLLVRIFLKD 397 (406)
T ss_pred HHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC---CchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 87777666655443 468999999999999999999999999999887 677766666555555544444444443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.3e-10 Score=105.31 Aligned_cols=131 Identities=12% Similarity=0.075 Sum_probs=106.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhccccCchh
Q psy10491 69 SKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVP 148 (520)
Q Consensus 69 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~ 148 (520)
.+|+++.+.++..+.+..+..++.++.+++.||+|+||.+.++..+..++.++....+ ......+-++.|++.+..+|
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~--~~~~~~~~~l~g~~~s~i~P 249 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTH--GYVAMWFVLALGLFNSIMFP 249 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999888888887776665543 33222355588999999999
Q ss_pred hHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHH
Q psy10491 149 CTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGV 206 (520)
Q Consensus 149 ~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~ 206 (520)
...+...+..|+ +.+.+.++. ....+|.+++|++.|.+.+. .|.+..|++..+
T Consensus 250 ~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~---~g~~~a~~v~~~ 302 (310)
T TIGR01272 250 TIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADC---LGIQLAFALPVP 302 (310)
T ss_pred HHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHh---ccchHHHHHHHH
Confidence 999999998854 456666765 56678999999999999987 788888875443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-10 Score=112.20 Aligned_cols=141 Identities=14% Similarity=0.076 Sum_probs=110.0
Q ss_pred CCCCCChhhhHHHHHHHHH-HHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhh----hHH-HHHHHHHHHhc
Q psy10491 68 DSKSWSTVERGLLLSSFFY-GYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQ----SIW-CLAAVRFIQGM 141 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~----~~~-~l~~~r~l~G~ 141 (520)
+|.|++++++|++.+...+ ...++.++.|++.||+|+|+.+..+..+.++..+....... .+. .+.....+.++
T Consensus 236 ~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (390)
T TIGR02718 236 VDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSL 315 (390)
T ss_pred HhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHH
Confidence 4679999999999888764 66677899999999999999988877665333332221110 122 44555666677
Q ss_pred cccCchhhHHHHHhhhcCC-CcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHH
Q psy10491 142 GEGPIVPCTHAILAKWIPP-GERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIW 211 (520)
Q Consensus 142 g~~~~~~~~~~~i~~~~~~-~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~ 211 (520)
+.+...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+.+. .||+..|++.+++.++.
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~---~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 316 ITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR---FGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccHHHHHHHHHHHHHH
Confidence 7777778888888888876 7899999999999999999999999999998 79999998877766653
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.8e-10 Score=113.57 Aligned_cols=138 Identities=17% Similarity=0.118 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhH-HHHHHHHHHHhccccCchhhHHHHHhhhcC
Q psy10491 81 LSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSI-WCLAAVRFIQGMGEGPIVPCTHAILAKWIP 159 (520)
Q Consensus 81 ~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~ 159 (520)
.....+...++.++.+++.||+|||+.+.++.++.+++.++..+.+... +..++.-++.+++.+..++..+.+..|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3445567778889999999999999999999999998888887774223 355556667777777778889999999999
Q ss_pred CCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10491 160 PGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPH 224 (520)
Q Consensus 160 ~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~ 224 (520)
++.|+.++|+.+....+|.+++|.+.+ +.+ .++..++++.+...++..+ ..+++||+..
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~----~~~~~~~~~~~~~~~~~~~-~~~~lpet~~ 499 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGE----KWLFLPLVLFGGLALLAGI-LTLFLPETKG 499 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH----HHHhhHHHHHHHHHHHHHH-HHHcCcCCCC
Confidence 999999999999999999999999998 444 4677888888887777444 4556787654
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-10 Score=112.64 Aligned_cols=159 Identities=19% Similarity=0.216 Sum_probs=118.7
Q ss_pred HHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhh
Q psy10491 279 GYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPV 358 (520)
Q Consensus 279 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (520)
+...+...+|.+.++ +|.++.+.+++.+...++..++.++.|++.||+|||+.+ ..+..+..++.....
T Consensus 6 ~~~~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~----------~~~~~~~~i~~~~~~ 74 (377)
T PRK11102 6 AIDMYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVI----------LGGTLVFALAAVACA 74 (377)
T ss_pred HHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHH----------HHHHHHHHHHHHHHH
Confidence 344555678888877 699999999999999999999999999999999999876 466666666665555
Q ss_pred ccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHH
Q psy10491 359 ILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVV 437 (520)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~ 437 (520)
..++ .+......++.+.+.+...+....+..+..|++ |+++.++.+....+|..++|.+.+.+.+ ..+|+..
T Consensus 75 ~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~~~~~~ 147 (377)
T PRK11102 75 LAQT-IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV------WFSWHAI 147 (377)
T ss_pred HHcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HcChHHH
Confidence 5443 333333333333334445555566666776655 9999999999999999999999999988 5689999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy10491 438 FLVSAVLYITCATVYLLF 455 (520)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~ 455 (520)
|++.+++.++..++....
T Consensus 148 ~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 148 FWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 988887777766555443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.5e-10 Score=108.44 Aligned_cols=188 Identities=18% Similarity=0.168 Sum_probs=152.1
Q ss_pred hhhccch-hHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcC----CCcchhHHHHHhHHHHHHHHHHHHHHHHHH-HHhhc
Q psy10491 258 GDIVKSG-PFLSILVAHMGQNFGYETLMTMLPTFLKEVLH----FDMIKNGLISATPYIAMFITSSVLNYLADY-FIRKK 331 (520)
Q Consensus 258 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~ 331 (520)
+..+++| .++.+...-+.--++++++...+..|+....+ +|.+++.-+++.+....-+..+++||++|| +|+|+
T Consensus 14 ~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~ 93 (498)
T COG3104 14 MKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR 93 (498)
T ss_pred cccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 3445544 57778888888889999999999999988887 999998888888887778889999999999 58888
Q ss_pred cccccchhhhhhhhhchhhhhhhhhhhccC--CChHHHHHHHHHHHHHhhccccccceeeccCCCCc---chhHHHHHHH
Q psy10491 332 ILSTGATRKLMTSIGEYGPGLMFIIPVILG--FTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF---AGILMSITNC 406 (520)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~g~~~g~~~~ 406 (520)
.+ ..+.++..++.+++.... ......+.+.++. ...+..-+....+..+.+|++ |-.++++..+
T Consensus 94 tI----------~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~-iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~ 162 (498)
T COG3104 94 TI----------VLGAILMAIGHLVLAISSVSGPGGLYIGLALII-VGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYM 162 (498)
T ss_pred HH----------HHHHHHHHHHHHHHhccccccccHHHHHHHHHH-hccccccccHHHHHHHhcCCCCcccCCCccEEEE
Confidence 87 688888888888888764 3334455555555 556777778888888877654 8888999999
Q ss_pred HHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q psy10491 407 SANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQY 462 (520)
Q Consensus 407 ~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (520)
..++|+.++|.+.+++.+ ..+|+..|...++-+.++.+..+..++.....
T Consensus 163 ~iNiGsl~~p~i~~~~~~------~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~ 212 (498)
T COG3104 163 GINIGSLIAPIITGLLAI------NYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGI 212 (498)
T ss_pred EeehHHHHHHHHHHHHHH------hhCHHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence 999999999999999999 77899999999999999999888877655443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.9e-10 Score=108.87 Aligned_cols=178 Identities=13% Similarity=0.140 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhh
Q psy10491 265 PFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTS 344 (520)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 344 (520)
+++.++..++...+........+|.+ ++.+|.+..+.|++.+...++..++++..|++.||+|+|+.+ .
T Consensus 4 ~~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~----------~ 72 (410)
T TIGR00885 4 PFALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGI----------L 72 (410)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH----------H
Confidence 35556666666666665555677766 555799999999999999999999999999999999999987 5
Q ss_pred hhchhhhhhhhhhhccC--CChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHH
Q psy10491 345 IGEYGPGLMFIIPVILG--FTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGL 421 (520)
Q Consensus 345 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~ 421 (520)
.+..+.+++........ ++.+......++.+...+...+....+..+..|++ +++..++.+...++|..++|.+.+.
T Consensus 73 ~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~ 152 (410)
T TIGR00885 73 LGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQ 152 (410)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665543322 23333333334434444555555555555555554 9999999999999999999999998
Q ss_pred hhccccc--------------------cccchhHHHHHHHHHHHHHHHHHHH
Q psy10491 422 LLNWFQH--------------------DEMLSWKVVFLVSAVLYITCATVYL 453 (520)
Q Consensus 422 l~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (520)
+...... ....+|+.+|.+.+++.++..++..
T Consensus 153 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~ 204 (410)
T TIGR00885 153 LILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM 204 (410)
T ss_pred HHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8641100 0124688889888876666554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=108.91 Aligned_cols=150 Identities=16% Similarity=0.225 Sum_probs=127.4
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcc--hhHHHHHHHHHHHHHHHHh--------HhhhHHHHHHHHH
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSH--KMLAYGMVVNAVFALLVPV--------SSQSIWCLAAVRF 137 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~~l~~~r~ 137 (520)
+++|++..+...+.-+..+...++++++|++.||+|.| ++++++++++.+..+...+ . ++.+.+.+.-+
T Consensus 310 ~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~-~~~~~f~~~a~ 388 (477)
T PF11700_consen 310 EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGL-KSPWEFWVLAV 388 (477)
T ss_pred HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCc-ccHHHHHHHHH
Confidence 79999999999999999999999999999999999999 8988888887555555444 3 23558888889
Q ss_pred HHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHH
Q psy10491 138 IQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIF 217 (520)
Q Consensus 138 l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~ 217 (520)
+.|+..|..++...++.+|..|+++.+..+|++....-....+||++.+.+.+.. .+-|+.+....++.++ .++..+
T Consensus 389 ~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t--g~~r~g~~~l~~lf~~-gl~ll~ 465 (477)
T PF11700_consen 389 LIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT--GSQRYGFLFLLVLFLI-GLILLF 465 (477)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchhHHHHHHHHHHH-HHHHHh
Confidence 9999999999999999999999999999999999999999999999999999873 3588888877776666 444445
Q ss_pred Hhhc
Q psy10491 218 LVYE 221 (520)
Q Consensus 218 ~~~e 221 (520)
.++.
T Consensus 466 ~v~~ 469 (477)
T PF11700_consen 466 FVDV 469 (477)
T ss_pred hccc
Confidence 5544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-09 Score=108.20 Aligned_cols=151 Identities=13% Similarity=0.087 Sum_probs=96.7
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHh-Hh-hhH-HHHHHHHHHHhcccc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPV-SS-QSI-WCLAAVRFIQGMGEG 144 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-~~-~~~-~~l~~~r~l~G~g~~ 144 (520)
+++|.+..+.++..++..++..+++++.|+++||+|||+.+.++.++.++....... .. .++ +..+..-.+.+++.+
T Consensus 272 ~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (432)
T PRK10406 272 NTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVS 351 (432)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 567889889999999988888999999999999999999887766554433322211 11 112 222222222333333
Q ss_pred CchhhHHHHHhhhcCCCcchhHHHHHHHHhHH-HHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcC
Q psy10491 145 PIVPCTHAILAKWIPPGERSFLGGIVYSGAQF-GTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYEN 222 (520)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~ 222 (520)
...+....+++|++|++.|+.++|+.+....+ .....|.+.+.+... ..|...++..++..++ ..+..++++++
T Consensus 352 ~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~---g~~~~~~~~~~~~~~i-~~~~~~~l~~~ 426 (432)
T PRK10406 352 FYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSI---GMETAFFWYVTLMAVV-AFLVSLMLHRK 426 (432)
T ss_pred HHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHh---CCCcHHHHHHHHHHHH-HHHHHHHhhhc
Confidence 34455678899999999999999998866554 334477777755433 3366666665555555 33444444443
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-09 Score=100.93 Aligned_cols=252 Identities=15% Similarity=0.107 Sum_probs=153.8
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhc----ccCcchhHHH-HHHHHHHHHHHHHhHhh---------------
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTK----NHDSHKMLAY-GMVVNAVFALLVPVSSQ--------------- 127 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~D----r~Grr~~l~~-~~~~~~~~~~~~~~~~~--------------- 127 (520)
.+.|++....+.+--...+...+.+|+.|..+| ||||||.++. +.+..+++.++.+++.+
T Consensus 60 ~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ 139 (498)
T KOG0637|consen 60 QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKP 139 (498)
T ss_pred HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccch
Confidence 588888888888888888888999999999999 5999887554 56666777777777641
Q ss_pred hHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchh-HHHHHHHHhHHHHHHhhhhhhhhhccccccCcch--HHHH
Q psy10491 128 SIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSF-LGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPA--IFYV 203 (520)
Q Consensus 128 ~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~-~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~--~f~i 203 (520)
... .++++--+.=+..-....++-+++.|...++++.+ +++++..+.++|..+|..+++++ +|+- +|..
T Consensus 140 rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~-------~~~~~~~Ft~ 212 (498)
T KOG0637|consen 140 RAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL-------GLYKIFPFTL 212 (498)
T ss_pred HHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc-------CceEEeehHH
Confidence 012 44445555555655677888999999998877777 99999999999999999888744 4432 2222
Q ss_pred HHHHHHHHHHHHH-------HHhhcCCCCC-----CCCChHHHHHHHhhccCCccccccccCccchhhhc-cchhHHHHH
Q psy10491 204 FGVICLIWCVLFI-------FLVYENPHSD-----KRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIV-KSGPFLSIL 270 (520)
Q Consensus 204 ~~~~~~~~~~~~~-------~~~~e~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 270 (520)
.-.+-+.+..+-. +..+++.... ++...+. .....+.. +..........+. ..|..+.++
T Consensus 213 ~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~-----~~~~~~~~--~~~~~~e~fG~~~~mpr~m~~L~ 285 (498)
T KOG0637|consen 213 TTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKG-----TTARSKSS--KLPFLLEIFGALKVMPRPMRMLL 285 (498)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCc-----cccccccc--CcchHHHHhchHhhCChhHHHHH
Confidence 2222222221111 1111111100 0000000 00000000 0000000011111 246788899
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHh-hcCCCcch---------------h-HHHHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy10491 271 VAHMGQNFGYETLMTMLPTFLKE-VLHFDMIK---------------N-GLISATPYIAMFITSSVLNYLADYFIRKKIL 333 (520)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~---------------~-~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 333 (520)
+...+.+++.+.+..|...++.+ .|+-++.. . .+=+.+..+...+.+....++.+|+|-|+..
T Consensus 286 i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y 365 (498)
T KOG0637|consen 286 IVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRY 365 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhcCcceEE
Confidence 99999999999988888887754 34433321 1 2234455666667788888999999955544
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.9e-10 Score=109.62 Aligned_cols=167 Identities=14% Similarity=0.097 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhch
Q psy10491 269 ILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEY 348 (520)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 348 (520)
......+..+........+|.+.++ +|.|+.+.++..+...++..++.++.|+++||+|||+.+ ..+..
T Consensus 13 ~~~~~~~~~~~~~~~~p~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~----------~~~~~ 81 (394)
T PRK11652 13 LVLLVAVGQMAQTIYVPAIADMARD-LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVI----------LVGMS 81 (394)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH----------HHHHH
Confidence 3333334444444445566777655 699999999999999999999999999999999999986 45555
Q ss_pred hhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCC-CcchhHHHHHHHHHhhHHhHHHHHHHHhhcccc
Q psy10491 349 GPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISP-CFAGILMSITNCSANVVGMLAPTISGLLLNWFQ 427 (520)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~ 427 (520)
+..++.+.....++ .+......++.+...+...+.......+..+ ++++.+.+..+....++..++|.+.+.+.+
T Consensus 82 ~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~--- 157 (394)
T PRK11652 82 IFILGTLVALFAHS-LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT--- 157 (394)
T ss_pred HHHHHHHHHHHHcc-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 55555555444433 3333332222222222233333344455555 448999999999999999999999999888
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHH
Q psy10491 428 HDEMLSWKVVFLVSAVLYITCATVYL 453 (520)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (520)
..+|+..|++.+++.++..+...
T Consensus 158 ---~~g~~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK11652 158 ---LFGWRACYLFLLLLGAGVTFSMA 180 (394)
T ss_pred ---ccChHHHHHHHHHHHHHHHHHHH
Confidence 56899999888776665544433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.9e-10 Score=108.91 Aligned_cols=156 Identities=17% Similarity=0.097 Sum_probs=113.5
Q ss_pred HHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhcc
Q psy10491 281 ETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVIL 360 (520)
Q Consensus 281 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (520)
.....-+|... +.+|.+..+.+...+.+.++..++.++.|+++||+|||+.+ ..+..+..++.+.....
T Consensus 33 ~~~~p~l~~i~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l----------~~~~~~~~~~~~~~~~a 101 (413)
T PRK15403 33 DLIQPGIINVV-RDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVL----------ITGALIFTLACAATLFT 101 (413)
T ss_pred HhhccCHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHH----------HHHHHHHHHHHHHHHHc
Confidence 33334455544 44799999999999999999999999999999999999987 45556666665555555
Q ss_pred CCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHH
Q psy10491 361 GFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFL 439 (520)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~ 439 (520)
++.....+.-++.+.+. +...+.......+.+|++ +++++++.+....++..++|.+.+.+.+ ..+|+..|+
T Consensus 102 ~~~~~l~~~r~l~Gi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~------~~gw~~~f~ 174 (413)
T PRK15403 102 TSMTQFLIARFIQGTSI-CFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH------FVHWKVLFA 174 (413)
T ss_pred CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCHHHHHH
Confidence 43333333334444333 333344445566777765 8999999999999999999999999887 568999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy10491 440 VSAVLYITCATVYLL 454 (520)
Q Consensus 440 ~~~~~~~~~~~~~~~ 454 (520)
+.+++.+++.+..++
T Consensus 175 ~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 175 IIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988887777665443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=105.67 Aligned_cols=163 Identities=11% Similarity=0.131 Sum_probs=118.3
Q ss_pred HHHHHhHHHHHhhcCCCcch-hHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhcc
Q psy10491 282 TLMTMLPTFLKEVLHFDMIK-NGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVIL 360 (520)
Q Consensus 282 ~~~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (520)
....+...++.+.+|++..+ .|.+.+....+..+..+++|+++||+|.|+.+ .++.+.-.+...+..+.
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL----------~l~~l~Wsl~t~L~~fa 112 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVL----------VLQALSFVCVWLLLLLG 112 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHH----------HHHHHHHHHHHHHHHHH
Confidence 33444555666678999999 99999999999999999999999999999987 56666666666666655
Q ss_pred CCChHHHHHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHH
Q psy10491 361 GFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFL 439 (520)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~ 439 (520)
.+.....+.-++.|.+ .+... ....++...+|+ +|+++.|+.++...+|.++++++.+++.. ..-..|....+
T Consensus 113 ~Sl~~L~i~R~llGva-EA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s----~gWr~y~~Ln~ 186 (511)
T TIGR00806 113 TSVWHMQLMEVFYSVT-MAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT----LGWISYSTLNI 186 (511)
T ss_pred HHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCchhHHHHHH
Confidence 4333333344444444 44444 555555555555 59999999999999999999999999554 12334555666
Q ss_pred HHHHHHHHHHHHHHHhcCCCc
Q psy10491 440 VSAVLYITCATVYLLFSSGRK 460 (520)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~ 460 (520)
+..+..+++.++.++++..++
T Consensus 187 Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 187 ISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCch
Confidence 777777888888888875544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.8e-09 Score=92.04 Aligned_cols=180 Identities=15% Similarity=0.128 Sum_probs=133.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHH
Q psy10491 30 RHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLA 109 (520)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~ 109 (520)
||..+.......... ...+.++..-|.+. +.+|+|.+|...+.++-.+|..+ .++.|.+.|++|++.++.
T Consensus 1 rW~~l~a~~~v~~~~-Gt~Y~Fs~yS~~Lk--------~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~ 70 (250)
T PF06813_consen 1 RWLSLVASIWVQLCS-GTTYTFSAYSPQLK--------SRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLL 70 (250)
T ss_pred ChhhHHHHHHHHHhc-CcccchhhhhHHHH--------HHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHH
Confidence 344444333333322 34556777778888 89999999999999999999886 588999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhh------HHHHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhh
Q psy10491 110 YGMVVNAVFALLVPVSSQS------IWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYP 183 (520)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~ 183 (520)
+|.+...+|..+..++-++ .|.+.+..++.|.+.+....++.....+.|| ++||.+.|+.-...+++..+-..
T Consensus 71 iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~ 149 (250)
T PF06813_consen 71 IGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQ 149 (250)
T ss_pred HHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHH
Confidence 9999999999888665321 2477777888888877777777787888995 68999999999999999988777
Q ss_pred hhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10491 184 VSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPH 224 (520)
Q Consensus 184 l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~ 224 (520)
+...+.+. ..-+. ++..+....+..++..++++..|+
T Consensus 150 i~~~~f~~---~~~~f-ll~la~~~~~v~l~~~~~vr~~~~ 186 (250)
T PF06813_consen 150 IYSAFFGD---DPSSF-LLFLAVLPAVVCLVAMFFVRPVPP 186 (250)
T ss_pred HHHHHcCC---ChHHH-HHHHHHHHHHHHHHHhhheeccCC
Confidence 77777664 23333 344444444445555556665544
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=106.48 Aligned_cols=155 Identities=15% Similarity=0.097 Sum_probs=124.7
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhh-----HH-H--HHHHHHHH
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQS-----IW-C--LAAVRFIQ 139 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~-----~~-~--l~~~r~l~ 139 (520)
++-|++..+..++.....+...+..++...+.||+|||+.++++..++.+..+++.....- .| . .+++.++.
T Consensus 298 ~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~ 377 (485)
T KOG0569|consen 298 KTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLF 377 (485)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999888887665211 12 1 23444444
Q ss_pred hccccC-chhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHH
Q psy10491 140 GMGEGP-IVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFL 218 (520)
Q Consensus 140 G~g~~~-~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~ 218 (520)
.++.+. ..|...-+.+|.+|++.|..++++......+...+-......+.+. .|= +.|++..+++++..+..++.
T Consensus 378 ~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~---~g~-~~filF~i~~~~~~i~~~~~ 453 (485)
T KOG0569|consen 378 IISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV---IGP-YVFILFVIPLAIFLIYLYRY 453 (485)
T ss_pred HHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcc-hhhHHHHHHHHHHHHHHHHh
Confidence 333332 3678889999999999999999999999888888777777777665 444 78888888999989999999
Q ss_pred hhcCCCCC
Q psy10491 219 VYENPHSD 226 (520)
Q Consensus 219 ~~e~~~~~ 226 (520)
+||++.+.
T Consensus 454 lPETkgr~ 461 (485)
T KOG0569|consen 454 LPETKGRT 461 (485)
T ss_pred CcccCCCC
Confidence 99987543
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.2e-11 Score=111.91 Aligned_cols=179 Identities=16% Similarity=0.179 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhh
Q psy10491 266 FLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSI 345 (520)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 345 (520)
...+.+.......-.+.+...++.. ++.+|.++...|++.....+...+.+++.|++.||+.|++++ .+
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v-~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~----------~v 103 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEV-QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVI----------AV 103 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHH-HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEE----------ee
Confidence 3444445555555444444444443 344799999999999999999999999999999999999998 56
Q ss_pred hchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 346 GEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
|..+-.++.+...+. +..|...++=.+.+.+.+...+....++.|.+|+. |++++++.+.+..+|..+|-.+.+.+.+
T Consensus 104 G~~iW~~Av~~~~fs-~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~ 182 (493)
T KOG1330|consen 104 GIFIWTLAVFASGFS-NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVAS 182 (493)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeecc
Confidence 666666666665555 34455666655666667888899999999999987 9999999999999999999888887777
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q psy10491 425 WFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQ 461 (520)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (520)
....|+++|...+++.+++.++.+++.++.++
T Consensus 183 -----~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 183 -----LTFWWRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred -----CccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 23449999999999999988888777655443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-09 Score=106.29 Aligned_cols=181 Identities=10% Similarity=0.011 Sum_probs=123.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhh
Q psy10491 263 SGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLM 342 (520)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 342 (520)
+|.++...+.....++..+.+....+.+-++.+|+|..+.+++.++..++..+.++..|++.||+|.|+.+
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~--------- 103 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWT--------- 103 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH---------
Confidence 35666666666666666666666666666656899999999999999999999999999999999999886
Q ss_pred hhhhchhhhhhhhhhhcc-----CCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHH
Q psy10491 343 TSIGEYGPGLMFIIPVIL-----GFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAP 416 (520)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~ 416 (520)
.++.++..+..+...+. ++.....+..++.+.+ +..++.....+...+|++ ||++.|+....+++|..+++
T Consensus 104 -~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig--g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~ 180 (462)
T PRK15034 104 -VFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA--GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ 180 (462)
T ss_pred -HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH--HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence 45555555555555543 2222333333444443 445566666677777765 99999999777778877666
Q ss_pred HHHHHhh-----ccccc-------cccchhHHHHHHHHHHHHHHHHHHHHh
Q psy10491 417 TISGLLL-----NWFQH-------DEMLSWKVVFLVSAVLYITCATVYLLF 455 (520)
Q Consensus 417 ~~~g~l~-----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (520)
.+...+. +.++. ....+++.+.++...+.++..++.++.
T Consensus 181 ~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 181 LVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6655433 21100 124457777778777777776666655
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.8e-10 Score=109.49 Aligned_cols=140 Identities=23% Similarity=0.300 Sum_probs=100.6
Q ss_pred CCCCCChhhhHHHHHHHH-HHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHH---HhHhhhHHHHHHHH----HHH
Q psy10491 68 DSKSWSTVERGLLLSSFF-YGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLV---PVSSQSIWCLAAVR----FIQ 139 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~-~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~l~~~r----~l~ 139 (520)
+++|+++.+.+++.+... ++..++.++.|++.||+|+|+.+.++..+..+..+.. ++.+++.+.+++.- +..
T Consensus 238 ~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (402)
T PRK11902 238 RGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCG 317 (402)
T ss_pred HhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 678999999999987654 5688999999999999999998877777666554433 33321123444444 455
Q ss_pred hccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHH
Q psy10491 140 GMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVL 214 (520)
Q Consensus 140 G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~ 214 (520)
|++.+...+....++.+.+|.+ ..++.+...++|..++++++|.+.+. .||+..|.+.++++++..++
T Consensus 318 g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~---~G~~~~f~~~~~~~~~~~~~ 385 (402)
T PRK11902 318 GMGTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLVEA---YGWPGFYLMTVVIALPGLAL 385 (402)
T ss_pred HHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHH
Confidence 5556666666666677666544 45666666678887777899999998 89999999988888774433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-09 Score=103.03 Aligned_cols=152 Identities=15% Similarity=0.180 Sum_probs=131.7
Q ss_pred CCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCch
Q psy10491 69 SKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIV 147 (520)
Q Consensus 69 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~ 147 (520)
+-+.+....|.+.++..+.-++.-.+..++.+|+|.|+.++++..++++=.+++++++ +. .+.+.+.+.|+-.+...
T Consensus 253 ~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~--~~~~i~~~klLH~~e~~l~l 330 (412)
T PF01306_consen 253 SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT--NPWVISLIKLLHALEFPLLL 330 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SHHHHHHHHHHHHHHHHHHH
T ss_pred ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHHHHH
Confidence 3344667799999999999999999999999999999999999999999999999996 66 99999999999999999
Q ss_pred hhHHHHHhhhcCCCcchhHHHHH-HHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy10491 148 PCTHAILAKWIPPGERSFLGGIV-YSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHS 225 (520)
Q Consensus 148 ~~~~~~i~~~~~~~~rg~~~~~~-~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~ 225 (520)
.....|+++.+|+|-.++...+. +...++|..+.+.++|.+.++ .|.+..|++.+.+.++..++..+.++++++.
T Consensus 331 va~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~---~G~~~tylimg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 331 VAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR---IGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh---cCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence 99999999999988878888774 688899999999999999998 8999999999999888888888888766554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=105.20 Aligned_cols=122 Identities=16% Similarity=0.099 Sum_probs=100.0
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhccc-CcchhHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhccccCc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNH-DSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPI 146 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~ 146 (520)
++.|.+..+.+++.+.+.++..++.++.|++.||+ +||+.+.++..+.+++.++..+.+ ++.... .-++.|++.+..
T Consensus 225 ~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~l~g~~~g~~ 302 (355)
T TIGR00896 225 ISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP-MHGLWA-WALVLGLGQGGA 302 (355)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh-hhHHHH-HHHHHHHhhhhH
Confidence 56788999999999999999999999999999999 566677788888888877777664 222222 357889999998
Q ss_pred hhhHHHHHhhhcC-CCcchhHHHHHHHHhHHHHHHhhhhhhhhhcc
Q psy10491 147 VPCTHAILAKWIP-PGERSFLGGIVYSGAQFGTIISYPVSGYLAYG 191 (520)
Q Consensus 147 ~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~ 191 (520)
.+...+.+.+..+ +++++...++.+....+|..++|.+.+.+.++
T Consensus 303 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~ 348 (355)
T TIGR00896 303 FPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI 348 (355)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887776654 45678999999998999999999999999987
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-09 Score=104.51 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhh
Q psy10491 265 PFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTS 344 (520)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 344 (520)
.+..+.+.++...+.........|.+ ++.+|.++.+.++..+...++..++.++.|++.||+|+|+.+ .
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l----------~ 95 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI----------I 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH----------H
Confidence 45566666677777777777888887 666899999999999999999999999999999999999987 5
Q ss_pred hhchhhhhhhhhhh--ccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHH
Q psy10491 345 IGEYGPGLMFIIPV--ILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGL 421 (520)
Q Consensus 345 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~ 421 (520)
.+..+..++.+... ...++........++.+...+...+....+..+..|++ ++..+++.+....+|..++|.+.+.
T Consensus 96 ~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 96 TGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665432 12233344444444444444555555555556777766 5557999999999999999999876
Q ss_pred hh
Q psy10491 422 LL 423 (520)
Q Consensus 422 l~ 423 (520)
+.
T Consensus 176 l~ 177 (438)
T PRK10133 176 LI 177 (438)
T ss_pred HH
Confidence 55
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=123.21 Aligned_cols=141 Identities=15% Similarity=0.185 Sum_probs=119.7
Q ss_pred CCCCCChh-hhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccC
Q psy10491 68 DSKSWSTV-ERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGP 145 (520)
Q Consensus 68 ~~~~~s~~-~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~ 145 (520)
+.+|.+.. +.|++.+...++..++.+++|+++||+++|+.+.++.++.+++.++..+.. ++ .+++..++.|++.+.
T Consensus 261 ~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~ 338 (1146)
T PRK08633 261 EVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP--SLASVLVLFFLFGFSAGL 338 (1146)
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHH
Confidence 67888888 999999999999999999999999999999999999888888888887775 55 778888999999998
Q ss_pred chhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHH
Q psy10491 146 IVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWC 212 (520)
Q Consensus 146 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~ 212 (520)
..+...+++.+.+|+++||+++++.+....+|.++++.+++.+.... .++...|++.+.+.++..
T Consensus 339 ~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~ 403 (1146)
T PRK08633 339 FIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLG--LSPAGLFYLIALVTLIGT 403 (1146)
T ss_pred hhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999988888887765421 456666766665554433
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.8e-10 Score=109.98 Aligned_cols=175 Identities=18% Similarity=0.277 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccC--cchhHHH
Q psy10491 33 TTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHD--SHKMLAY 110 (520)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~G--rr~~l~~ 110 (520)
.++.+.+...+...........+|... ++.+.+..+.+.+.++..+...++.++.|+++|+.. ++.+..+
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~--------~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~ 370 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYA--------KSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLL 370 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHH
Confidence 445566666777777777778888888 789999999999999999999999999999999988 4556778
Q ss_pred HHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhh
Q psy10491 111 GMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLA 189 (520)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~ 189 (520)
++++.+++...+++++ ++ .++..-++.|++.|........++.|..+.++-..+.|+.....+++.++||++++.+.
T Consensus 371 ~ll~~gl~~~~~p~~~--~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~ 448 (509)
T KOG2504|consen 371 TLLIAGLARLFLPFAT--TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLY 448 (509)
T ss_pred HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeee
Confidence 8888888888888886 77 99999999999999888888889999999999999999999999999999999999888
Q ss_pred ccccccCcchHHHHHHHHHHHHHHHHHHHhh
Q psy10491 190 YGTFLQGWPAIFYVFGVICLIWCVLFIFLVY 220 (520)
Q Consensus 190 ~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~ 220 (520)
+.. .+|...|+..++..++.. ..++..|
T Consensus 449 d~t--g~Y~~~f~~~g~~~~~s~-~~~~~~~ 476 (509)
T KOG2504|consen 449 DIT--GNYDHAFYFCGLCFLLSA-VLLLILR 476 (509)
T ss_pred ecc--CCeeeehhhcChHHHHHH-HHHHHhH
Confidence 873 459999999998888744 4444455
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.5e-07 Score=87.08 Aligned_cols=252 Identities=11% Similarity=0.025 Sum_probs=158.3
Q ss_pred ChhhhHHHHHHHHHHHHHh-hhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhh------------------------
Q psy10491 73 STVERGLLLSSFFYGYVLT-QIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQ------------------------ 127 (520)
Q Consensus 73 s~~~~g~~~s~~~~~~~~~-~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~------------------------ 127 (520)
+...+.++-+...+..++. .++.+++++|++|++.+-+....+....+++++.-.
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4467899999887877766 899999999999999988877777766666655510
Q ss_pred ------hHHHHHHHHHHHhccccCchh-hHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcc-----cccc
Q psy10491 128 ------SIWCLAAVRFIQGMGEGPIVP-CTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYG-----TFLQ 195 (520)
Q Consensus 128 ------~~~~l~~~r~l~G~g~~~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~-----~~~~ 195 (520)
++|...+.-+...+-.....+ .-..++.|.++.+|-.|..+++..+.++|.++++.+..++.+. ....
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~ 200 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVD 200 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC
Confidence 123333444444444444444 6778999999999999999999999999999999998888732 0012
Q ss_pred Ccc----hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHH
Q psy10491 196 GWP----AIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILV 271 (520)
Q Consensus 196 gwr----~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (520)
.|. ..+.+.++.+++ .+.+.+.+.+.....++..+.++ + ...++.+.....+.+.++++|.++.+.+
T Consensus 201 ~~~~~~~~l~~i~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~----~----~~k~k~k~~~~es~k~i~~S~yL~~ia~ 271 (472)
T TIGR00769 201 GWHVSLKNLMVIVICSGLA-IILLYWWVNRNVLTDPRSYNPAL----K----EKKVKPKMSTMESLKFLVSSPYILDLAL 271 (472)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCccccchhh----c----cccCCCCCCHHHHHHHHHhCHHHHHHHH
Confidence 342 233443444443 33334444332211111001110 0 0000012223456677889999888888
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhcCCCcch---hHHHHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy10491 272 AHMGQNFGYETLMTMLPTFLKEVLHFDMIK---NGLISATPYIAMFITSSVLNYLADYFIRKKIL 333 (520)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~---~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 333 (520)
...+++.....+....-....+.+--+... .|.+....++..++..++.+++.+|+|-+...
T Consensus 272 ~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a 336 (472)
T TIGR00769 272 LVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAA 336 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 888887777777765556666654322222 23344555566666677778999999887665
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-09 Score=106.33 Aligned_cols=185 Identities=14% Similarity=0.154 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHH----HHHhhccccccchhh
Q psy10491 265 PFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLAD----YFIRKKILSTGATRK 340 (520)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~~~~~~~~~ 340 (520)
++..+....+..++++.....+++.|+++ +|.++...+.+.....+..++..++.|+++| |+|||+.+.
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~i------ 77 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFI------ 77 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHH------
Confidence 45566667777788888888899998876 6999999999999999999999999999999 599999873
Q ss_pred hhhhhhchhhhhhhhhhhccCCC-------------h---HHHHHHHHHHHHHhhccccccceeeccCCCCc-c--hhHH
Q psy10491 341 LMTSIGEYGPGLMFIIPVILGFT-------------H---TPTIVCLILAMACNGGIYAGFKVNHIDISPCF-A--GILM 401 (520)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~--g~~~ 401 (520)
..+.....+++..+.+..+. . +..+..+.+..+......+...++..|..|++ | +.+.
T Consensus 78 ---l~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~ 154 (477)
T TIGR01301 78 ---AAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIAN 154 (477)
T ss_pred ---HHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHH
Confidence 33344444454444443221 0 12222222333344445556677788887765 3 6899
Q ss_pred HHHHHHHhhHHhHHHHHHHHh--hcccc-------ccccchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10491 402 SITNCSANVVGMLAPTISGLL--LNWFQ-------HDEMLSWKVVFLVSAVLYITCATVYLLFSSGR 459 (520)
Q Consensus 402 g~~~~~~~~g~~i~~~~~g~l--~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (520)
++.+...++|+.+++.+.+.. .+.++ .....+++..|++.+++.+++.++..+..+++
T Consensus 155 ~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 155 AYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 999999999999999998865 22110 00113788899999988888888777765554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-09 Score=107.03 Aligned_cols=160 Identities=10% Similarity=0.007 Sum_probs=104.6
Q ss_pred HHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhh
Q psy10491 279 GYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPV 358 (520)
Q Consensus 279 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (520)
..+.+..+.+. +++.+|+|..+.+.+.+... ......++.|++.||+|+|+.+ .++.++..++.+...
T Consensus 42 ~~y~fsv~s~~-L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vl----------lig~ll~~iG~ll~a 109 (591)
T PTZ00207 42 FMYAFNLISGA-MQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIF----------VLSMTVFCLGTLLFA 109 (591)
T ss_pred HHHHHHHHHHH-HHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHH----------HHHHHHHHHHHHHHH
Confidence 33455555565 45568999999998876633 3345666789999999999987 566666666666655
Q ss_pred ccC-----CChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccch
Q psy10491 359 ILG-----FTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLS 433 (520)
Q Consensus 359 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~ 433 (520)
+.. .+.+.+.+..++.+...+...+.......+.+|++||.+.|+......+|+++.+.+...+.. .+
T Consensus 110 la~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-------~~ 182 (591)
T PTZ00207 110 LTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFS-------DN 182 (591)
T ss_pred HHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hh
Confidence 541 233333333333333334444444455566789899999999999999999865555554443 25
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 434 WKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
+...|++.+++.++..++.+.+.+
T Consensus 183 ~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 183 TSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhee
Confidence 667777777777766665555443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-09 Score=107.96 Aligned_cols=124 Identities=13% Similarity=0.040 Sum_probs=101.7
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~ 146 (520)
+.+|.+....++......++..++.++++++.||+|+|+++.++.++..++.++..+.+.+++ .+++..++.|+|.+..
T Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~ 336 (448)
T PRK09848 257 YVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVT 336 (448)
T ss_pred eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 456666655555555556778889999999999999999999999998888887776533345 6677788999999999
Q ss_pred hhhHHHHHhhhcCCC-------cchhHHHHHHHHhHHHHHHhhhhhhhhhcc
Q psy10491 147 VPCTHAILAKWIPPG-------ERSFLGGIVYSGAQFGTIISYPVSGYLAYG 191 (520)
Q Consensus 147 ~~~~~~~i~~~~~~~-------~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~ 191 (520)
.+...++.+|..+.+ ++|...+..+....+|..+|+.+.+.+.+.
T Consensus 337 ~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 337 MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988654 359999999999999999999999888765
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=101.75 Aligned_cols=151 Identities=18% Similarity=0.158 Sum_probs=129.9
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhccccCch
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIV 147 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~ 147 (520)
.++|++..++.++.-...+..+++++++|++.||+|.|+++.++++++.+.++..-+.. ....+.++-.+.|...|..+
T Consensus 281 ~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~-~~~~f~i~gll~g~s~G~~q 359 (438)
T COG2270 281 ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE-GELDFWILGLLVGTSLGGAQ 359 (438)
T ss_pred HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHhcchHH
Confidence 69999999999999999999999999999999999999999999999988887776664 23378888899999999999
Q ss_pred hhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcC
Q psy10491 148 PCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYEN 222 (520)
Q Consensus 148 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~ 222 (520)
..+.++.++.+|+++-++.+|+++...-.+..+||.+.+.+.+.. .+-|..+....++..+ .++..+.+|++
T Consensus 360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT--g~~r~g~~~i~vll~i-Gl~~L~~v~~~ 431 (438)
T COG2270 360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT--GSSRAGVLSIIVLLLI-GLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh--cchhhHHHHHHHHHHh-hHhhEEeecCC
Confidence 999999999999999999999999999999999999999998864 4677777665555544 44455555554
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.4e-09 Score=92.67 Aligned_cols=178 Identities=11% Similarity=0.082 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHH
Q psy10491 30 RHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLA 109 (520)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~ 109 (520)
..+++.++++++....+.....+ |...+ +.||+|+...+-+.+......++.+++.|.++||+|++...+
T Consensus 265 pfw~~~iicv~yyva~fPFi~lg---~~fF~-------~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv 334 (459)
T KOG4686|consen 265 PFWVLVIICVLYYVAWFPFITLG---PMFFQ-------KRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWV 334 (459)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhh---HHHHH-------HhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhH
Confidence 34555566666655554433333 33332 899999999999999988899999999999999999998766
Q ss_pred HHHHHH-HHHHHHHHhHhhhHHHHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhh
Q psy10491 110 YGMVVN-AVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYL 188 (520)
Q Consensus 110 ~~~~~~-~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l 188 (520)
.+..+. .++-....|. .+.=..+..+.|+..+.........++...|+++.|++.|..+...++|..+.|++++.+
T Consensus 335 ~~a~~~tl~~H~~l~Ft---~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i 411 (459)
T KOG4686|consen 335 ASACILTLLGHSGLFFT---FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI 411 (459)
T ss_pred HHHHHHHHHHhhhHHhh---hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence 655444 4444444443 223345667778877666555667788888999999999999999999999999999999
Q ss_pred hccccccCcchHHHHHHHHHHHHHHHHHHHhh
Q psy10491 189 AYGTFLQGWPAIFYVFGVICLIWCVLFIFLVY 220 (520)
Q Consensus 189 ~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~ 220 (520)
.++.+.+.|--.|.+......+..+...+.+.
T Consensus 412 ~d~~g~y~~le~ffl~~~~~aL~svgil~~~N 443 (459)
T KOG4686|consen 412 ADGDGSYDNLEAFFLIIGLMALTSVGILFYLN 443 (459)
T ss_pred ecCCCchhhHHHHHHHHHHHHHHHHHHHhhee
Confidence 98743344555554433333332333444443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-09 Score=110.25 Aligned_cols=170 Identities=14% Similarity=0.153 Sum_probs=118.9
Q ss_pred HHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhh
Q psy10491 279 GYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPV 358 (520)
Q Consensus 279 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (520)
...++....-.-+++.++++..+.|++.+.+.++..++.++.+++.||.+|++.+ .++.++.+++.++..
T Consensus 47 ~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i----------~~g~ll~~lg~ll~a 116 (633)
T TIGR00805 47 LYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVI----------GIGCAIMGLGSFLLS 116 (633)
T ss_pred HHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEE----------EecHHHHHHHHHHHh
Confidence 3334444333445566899999999999999999999999999999999999988 455555555555443
Q ss_pred ccC-------------------------------------------------C-ChHHHHHHHHHHHHHhhcccccccee
Q psy10491 359 ILG-------------------------------------------------F-THTPTIVCLILAMACNGGIYAGFKVN 388 (520)
Q Consensus 359 ~~~-------------------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (520)
..+ + ....+++.-++.+.+.+...+....+
T Consensus 117 lphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~ 196 (633)
T TIGR00805 117 LPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISY 196 (633)
T ss_pred ChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchh
Confidence 321 0 11223333444444455666677778
Q ss_pred eccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccc----------------cchhHHHHHHHHHHHHHHHHH
Q psy10491 389 HIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDE----------------MLSWKVVFLVSAVLYITCATV 451 (520)
Q Consensus 389 ~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~ 451 (520)
+.|..|++ |+...|+.+....+|.++|+.+.+.+.+.+.+.. ..+|...|++.+++.++..+.
T Consensus 197 i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~ 276 (633)
T TIGR00805 197 IDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP 276 (633)
T ss_pred hhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877765 9999999999999999999999999886431100 023777888888777777666
Q ss_pred HHHhcCC
Q psy10491 452 YLLFSSG 458 (520)
Q Consensus 452 ~~~~~~~ 458 (520)
.++++++
T Consensus 277 l~~~p~~ 283 (633)
T TIGR00805 277 FFFFPKA 283 (633)
T ss_pred HHhCccc
Confidence 6666554
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.2e-09 Score=102.76 Aligned_cols=155 Identities=21% Similarity=0.246 Sum_probs=122.9
Q ss_pred CCCC-CChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHHH----HHHHHHHHhcc
Q psy10491 68 DSKS-WSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWC----LAAVRFIQGMG 142 (520)
Q Consensus 68 ~~~~-~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~----l~~~r~l~G~g 142 (520)
++.| .+....+.+.++..++-.+.-.+.+++..|+|.|+++.++.+.+++=..+.+..+++.+. .++...+.|+.
T Consensus 235 ~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~t 314 (400)
T PF03825_consen 235 QELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLT 314 (400)
T ss_pred HHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHH
Confidence 4555 677778888888888888999999999999999999999999999988888887222222 33445679999
Q ss_pred ccCchhhHHHHHhhhcCCCcchhHHHHHHHH-hHHHHHHhhhhhhhhhcccc---ccCcchHHHHHHHHHHHHHHHHHHH
Q psy10491 143 EGPIVPCTHAILAKWIPPGERSFLGGIVYSG-AQFGTIISYPVSGYLAYGTF---LQGWPAIFYVFGVICLIWCVLFIFL 218 (520)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~-~~~G~~~g~~l~~~l~~~~~---~~gwr~~f~i~~~~~~~~~~~~~~~ 218 (520)
.+..+.++..++.+.+|++.|+++.+++++. .++|..+|..++|++.+..+ ...|...+.+.+.+.++..++.+++
T Consensus 315 f~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 315 FGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998864 68999999999999998711 1235556666666666656666665
Q ss_pred hhcC
Q psy10491 219 VYEN 222 (520)
Q Consensus 219 ~~e~ 222 (520)
.+|+
T Consensus 395 fk~~ 398 (400)
T PF03825_consen 395 FKPK 398 (400)
T ss_pred ccCC
Confidence 5554
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.9e-09 Score=97.43 Aligned_cols=178 Identities=14% Similarity=0.051 Sum_probs=127.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhh
Q psy10491 264 GPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMT 343 (520)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 343 (520)
|.++...+.....++..+.+....+.+- +.+|+|+.|.+++.++..+.+.+.+++.|.+.||+|.|+..
T Consensus 14 ~~L~~S~~af~v~F~VW~l~s~l~~~i~-~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~---------- 82 (417)
T COG2223 14 RNLWLSTLAFDVGFMVWTLFSPLGVFIK-SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWT---------- 82 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHH----------
Confidence 3455555555555555554444444444 66899999999999999999999999999999999999986
Q ss_pred hhhchhhhhhhhhhhccCCCh-HHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHH
Q psy10491 344 SIGEYGPGLMFIIPVILGFTH-TPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGL 421 (520)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~ 421 (520)
.+++++..+-.+.+.+..... ......+-+..+..+..+......++..+|++ +|.++|+.. .+|+|..+...+...
T Consensus 83 ~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~ 161 (417)
T COG2223 83 ILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPL 161 (417)
T ss_pred HHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHH
Confidence 566666666655555544333 12222222223334566667777777777766 999999988 999999999999998
Q ss_pred hhccccccccch---hHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10491 422 LLNWFQHDEMLS---WKVVFLVSAVLYITCATVYLLFSSGR 459 (520)
Q Consensus 422 l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (520)
+.. ..+ |+.+..+.....++..+..++..+..
T Consensus 162 v~~------~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~ 196 (417)
T COG2223 162 VAV------AFGFLAWRNVAGIYVVALAIAAVLAWLGMNDV 196 (417)
T ss_pred HHH------HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888 455 88888888888888777766665443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.4e-10 Score=111.97 Aligned_cols=148 Identities=16% Similarity=0.281 Sum_probs=111.4
Q ss_pred hcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhcc-CCChHHHHHHHH
Q psy10491 294 VLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVIL-GFTHTPTIVCLI 372 (520)
Q Consensus 294 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 372 (520)
.++++..+.|.+.+...++..++.++.|++.||+|+|+.+ ..+.++..++.+...+. .......++.-+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 139 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSI----------GIGMFLSSVISIVIPWAAGGGIALVVFCRV 139 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhh----------HHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 4688999999999999999999999999999999999987 44544444444333222 122233444444
Q ss_pred HHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHHhHHHHHHHHhhcccccccc-chhHHHHHHHHHHHHHHHH
Q psy10491 373 LAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEM-LSWKVVFLVSAVLYITCAT 450 (520)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 450 (520)
+.+...+...+....+..+..|+ +|++++|+.+....+|..++|.+.+.+.+ . .+|+..|++.++..++..+
T Consensus 140 ~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~------~~~gw~~~f~i~~~~~~~~~~ 213 (465)
T TIGR00894 140 IQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCE------SWGGWPMIFYVFGIVGCAWSL 213 (465)
T ss_pred HHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccCCCCeehhhhhHHHHHHHH
Confidence 44455566777777777887775 59999999999999999999999999988 4 4899999998887777666
Q ss_pred HHHHhcC
Q psy10491 451 VYLLFSS 457 (520)
Q Consensus 451 ~~~~~~~ 457 (520)
+.+...+
T Consensus 214 ~~~~~~~ 220 (465)
T TIGR00894 214 LWFVFPA 220 (465)
T ss_pred HHHHHhc
Confidence 6655544
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-07 Score=91.67 Aligned_cols=325 Identities=13% Similarity=0.063 Sum_probs=178.6
Q ss_pred HHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhH------hh-----hHH---HHHHHHHHHhcccc-Cch
Q psy10491 83 SFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVS------SQ-----SIW---CLAAVRFIQGMGEG-PIV 147 (520)
Q Consensus 83 ~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~------~~-----~~~---~l~~~r~l~G~g~~-~~~ 147 (520)
+-.+...+.++..|.+.||..|.+++..+++..-++..+.+.. .. +.+ .+++.-.+.|.-.- ...
T Consensus 46 ~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~ 125 (432)
T PF06963_consen 46 VRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASI 125 (432)
T ss_pred HHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 4445667888899999999999999877766554433332221 00 011 22222222222111 111
Q ss_pred hhHHHHHhhhc------CCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhh-
Q psy10491 148 PCTHAILAKWI------PPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVY- 220 (520)
Q Consensus 148 ~~~~~~i~~~~------~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~- 220 (520)
....++=.||. +++.+.+..+...-.--+.-+++|++.|.+... .+.+....+.+...++..++=++++.
T Consensus 126 ~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~---~s~~~~~~~i~~~N~~S~~vEy~~l~~ 202 (432)
T PF06963_consen 126 ANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTF---ASPVIAAIFIAGWNLASVFVEYFLLAR 202 (432)
T ss_pred hhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222234553 344566777777777788899999999999887 78888888888888776655444332
Q ss_pred ---cCCC---CCCCCChHHHHHHHhhccCCc-------cccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHh
Q psy10491 221 ---ENPH---SDKRVSVEEKEYILYSIFGGD-------IIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTML 287 (520)
Q Consensus 221 ---e~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (520)
..|. ++++...++.+...+...... ..+..+.....|+..+++|.+. ..+...+.++...++...+
T Consensus 203 VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vfl-as~alalLY~TVLsf~~lm 281 (432)
T PF06963_consen 203 VYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFL-ASFALALLYFTVLSFGGLM 281 (432)
T ss_pred HHHhChHhcCCCCCccccccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHH-HHHHHHHHHHHHhcCcHHH
Confidence 1121 111111000000000000000 0001112234566666666544 3444444444455677788
Q ss_pred HHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCC-hHH
Q psy10491 288 PTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFT-HTP 366 (520)
Q Consensus 288 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 366 (520)
..|+... |+++...|..-+...+.++.+.++..++.+|+|..+.-.++. ..-..+..++...+....++ ...
T Consensus 282 t~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l------~~q~~~L~~~v~~~~~~~~~~~~~ 354 (432)
T PF06963_consen 282 TAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSL------WWQWVCLALCVVSFWAPGSPFSSI 354 (432)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH------HHHHHHHHHHHHHHhcCCCCchhh
Confidence 8899886 999999999999999999999999999999999776542111 11111112222222222212 122
Q ss_pred HHHHHHHHH-----HHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHH
Q psy10491 367 TIVCLILAM-----ACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTI 418 (520)
Q Consensus 367 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~ 418 (520)
....++.+. +..+.=.........++++++||+..|+-+..+++...+.-.+
T Consensus 355 s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 355 SAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 2222333333444445555669999999999988877665444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.5e-09 Score=119.08 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=116.0
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhH-------------------hhh
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVS-------------------SQS 128 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-------------------~~~ 128 (520)
+.+|.+..+.|++.+++.++..++.++.|+++|+.++++.+..+.++.+++.+..++. ..+
T Consensus 254 ~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1140)
T PRK06814 254 ETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH 333 (1140)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccc
Confidence 5689999999999999999999999999999999888887776666666655544432 012
Q ss_pred HHHHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHH
Q psy10491 129 IWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVIC 208 (520)
Q Consensus 129 ~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~ 208 (520)
.|.+++..++.|++.+...+...+++.+.+|+++||+++|..+....+|..+++++++.+.... .++...|++.+.+.
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~--~~~~~~~~~~~~~~ 411 (1140)
T PRK06814 334 GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG--FSIPWIILFIALAN 411 (1140)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHH
Confidence 3467788899999999999999999999999999999999999999999999999999987431 56677776666554
Q ss_pred HHHH
Q psy10491 209 LIWC 212 (520)
Q Consensus 209 ~~~~ 212 (520)
++..
T Consensus 412 ~~~~ 415 (1140)
T PRK06814 412 LIVA 415 (1140)
T ss_pred HHHH
Confidence 4433
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.6e-10 Score=101.74 Aligned_cols=148 Identities=16% Similarity=0.103 Sum_probs=122.7
Q ss_pred CCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHH
Q psy10491 296 HFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAM 375 (520)
Q Consensus 296 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (520)
+-+..+.|++++...+.+++.+++.|.+.||+|+|..+ .+|++++....+++++..+....+++=.+-+.
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm----------~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgv 171 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPM----------VAGLFVMFLSTILFAFGNSYPMLFVARSLQGV 171 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHH----------HHHHHHHHHHHHHHHHcchhHHHHHHHHHhhh
Confidence 55677899999999999999999999999999999887 78999999998888887765544444444444
Q ss_pred HHhhccccccceeeccCCCCc--chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy10491 376 ACNGGIYAGFKVNHIDISPCF--AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYL 453 (520)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~p~~--~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (520)
+. +.......++..+.+|++ |++++|+.-.+..+|-.+||+++|.++| ..|+...|.++++++++...+-+
T Consensus 172 gs-A~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe------~~Gk~aPFlVL~~v~Lld~~L~l 244 (464)
T KOG3764|consen 172 GS-AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYE------FAGKSAPFLVLAIVLLLDGALQL 244 (464)
T ss_pred hH-HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHh------hcCCcCcHHHHHHHHHHHHHHHH
Confidence 43 445555566677777776 8999999999999999999999999999 77999999999999999888877
Q ss_pred HhcCCCc
Q psy10491 454 LFSSGRK 460 (520)
Q Consensus 454 ~~~~~~~ 460 (520)
+..+..+
T Consensus 245 ~vi~p~~ 251 (464)
T KOG3764|consen 245 LVIEPTE 251 (464)
T ss_pred heeCccc
Confidence 7765543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-07 Score=96.37 Aligned_cols=149 Identities=19% Similarity=0.207 Sum_probs=120.5
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcc-cCcchhHHHHHHHHHHHHHHHHhHhh------hHH-HHHHHHHHH
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKN-HDSHKMLAYGMVVNAVFALLVPVSSQ------SIW-CLAAVRFIQ 139 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~-~l~~~r~l~ 139 (520)
+.+|.+.+....+...+....-+..++.|+++|+ +||++.+.++.++..+|.++.++... ... ..+++-.+.
T Consensus 16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi 95 (654)
T TIGR00926 16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI 95 (654)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence 4567788888888888888889999999999996 79999999999999999988877521 012 466788888
Q ss_pred hccccCchhhHHHHHhhhcCCC---cchhHHHHHHHHhHHHHHHhhhhhhhhhccc----cccCcchHHHHHHHHHHHHH
Q psy10491 140 GMGEGPIVPCTHAILAKWIPPG---ERSFLGGIVYSGAQFGTIISYPVSGYLAYGT----FLQGWPAIFYVFGVICLIWC 212 (520)
Q Consensus 140 G~g~~~~~~~~~~~i~~~~~~~---~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~----~~~gwr~~f~i~~~~~~~~~ 212 (520)
.+|.|++-|...+...|.++++ +|-..+.++..+.++|+.+++++.+++.+.. ...+|...|.+.++..++..
T Consensus 96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~ 175 (654)
T TIGR00926 96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILAL 175 (654)
T ss_pred HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999754 3677888899999999999999998887431 11479999999888877744
Q ss_pred HHHH
Q psy10491 213 VLFI 216 (520)
Q Consensus 213 ~~~~ 216 (520)
++..
T Consensus 176 lvf~ 179 (654)
T TIGR00926 176 IVFM 179 (654)
T ss_pred HHHH
Confidence 4433
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=2e-08 Score=87.74 Aligned_cols=345 Identities=14% Similarity=0.078 Sum_probs=182.4
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~ 146 (520)
+.++....++|.+.-...-...+...+.|.++|+-|||+.-+.-++.+.++++- -.++ .+ .++++|++.|+..+..
T Consensus 65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT-KhSp--qYkVLmVGR~LGGiaTsLL 141 (454)
T KOG4332|consen 65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT-KHSP--QYKVLMVGRVLGGIATSLL 141 (454)
T ss_pred hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh-hcCC--ceEEEeehhhhhhHHHHHH
Confidence 688888999998888777778888999999999999999766555555554432 2344 77 9999999999999988
Q ss_pred hhhHHHH-HhhhcCCCcchhHHHHHHH--------HhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHH
Q psy10491 147 VPCTHAI-LAKWIPPGERSFLGGIVYS--------GAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIF 217 (520)
Q Consensus 147 ~~~~~~~-i~~~~~~~~rg~~~~~~~~--------~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~ 217 (520)
+.+--++ +.|.. ++|+.-.-+... +..+=.+++.+.+..+.+..+ .|--.+|-..+.+..+...+..-
T Consensus 142 FSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~s-lGPVAPFdAAacfLaigmAvil~ 218 (454)
T KOG4332|consen 142 FSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFS-LGPVAPFDAAACFLAIGMAVILS 218 (454)
T ss_pred HHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhc-cCCCCchHHHHHHHHHHHHHHHh
Confidence 8877766 56654 344433322222 222333444445555554411 45556665443333232222221
Q ss_pred HhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHH-HhHHHHHhhcC
Q psy10491 218 LVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMT-MLPTFLKEVLH 296 (520)
Q Consensus 218 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g 296 (520)
--.|+-.+. .+.+. -...-+...+.+..++++.++.....+.-...+.+.. |.|..--+.
T Consensus 219 ~W~ENygdp-----s~~kd------------lltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~-- 279 (454)
T KOG4332|consen 219 SWSENYGDP-----SENKD------------LLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPND-- 279 (454)
T ss_pred hhhhccCCh-----hhhHH------------HHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCc--
Confidence 112221111 11110 0111122224455566665554444443333333332 333321111
Q ss_pred CCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhcc----CC--ChHHHHHH
Q psy10491 297 FDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVIL----GF--THTPTIVC 370 (520)
Q Consensus 297 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~ 370 (520)
...--|.+++.+.+..++|+-+..++..|-..|.-- .+.+.+++..+.+.+...+ ++ +.....+.
T Consensus 280 -e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~--------ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~ 350 (454)
T KOG4332|consen 280 -EEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVES--------YMQIVFLVSIAALLLPILTSSVSPSKESPSESLIG 350 (454)
T ss_pred -ccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccch--------HHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHH
Confidence 112247888888888888877766665543322110 0123333333332222111 11 22333444
Q ss_pred HHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHH
Q psy10491 371 LILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCA 449 (520)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (520)
++..-.+.+..+|.++-.-....|++ |++.+-.+..=-++-..++-.. +.+ .....+-+..|-++.+...++.
T Consensus 351 F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLyn---lh~---~~~p~~tr~mf~icS~~~~~a~ 424 (454)
T KOG4332|consen 351 FCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN---LHV---DAFPTTTRNMFGICSAFLFVAS 424 (454)
T ss_pred HHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhee---ccc---ccCccccchhhhhhHHHHHHHH
Confidence 55555666778888877777777877 8777666544444333322211 111 1123344567777777766665
Q ss_pred HHH
Q psy10491 450 TVY 452 (520)
Q Consensus 450 ~~~ 452 (520)
+..
T Consensus 425 i~~ 427 (454)
T KOG4332|consen 425 ILQ 427 (454)
T ss_pred HHH
Confidence 443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.1e-08 Score=99.22 Aligned_cols=119 Identities=10% Similarity=-0.056 Sum_probs=96.0
Q ss_pred ChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHh---HhhhHH-HHHHHHHHHhccccCchh
Q psy10491 73 STVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPV---SSQSIW-CLAAVRFIQGMGEGPIVP 148 (520)
Q Consensus 73 s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~-~l~~~r~l~G~g~~~~~~ 148 (520)
+....+++.++..++..++.+++++++||+|+|+.+.++.++..++.+...+ ..+++. .+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888899999999999999999999999888877766655433 212344 677777889999999999
Q ss_pred hHHHHHhhhcC-------CCcchhHHHHHHHHhHHHHHHhhhhhhhhhcc
Q psy10491 149 CTHAILAKWIP-------PGERSFLGGIVYSGAQFGTIISYPVSGYLAYG 191 (520)
Q Consensus 149 ~~~~~i~~~~~-------~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~ 191 (520)
...++++|..+ .++.|..++......-+|..+++.+.+.+.+.
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~ 393 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL 393 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999965 33456689999999999999999999988765
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-08 Score=95.03 Aligned_cols=160 Identities=28% Similarity=0.463 Sum_probs=125.6
Q ss_pred HHHHHHHhhhheeeeeccCCCCCcccCCCCCCh--hhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHH
Q psy10491 42 ANAYVMRTNMSVAIVAMTNPESSIHVDSKSWST--VERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFA 119 (520)
Q Consensus 42 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~ 119 (520)
+....+........+... .+++.+. .+.+++.+.+.++..++.++.|.++||+|||+.+..+.....++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 83 (338)
T COG0477 12 LLLGLDLGLLSPALPLLL--------STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGT 83 (338)
T ss_pred HHHHHhcchHHHHHHHHH--------HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHH
Confidence 333345555555566655 4444444 578999999999999999999999999999988888887766667
Q ss_pred HHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCC-CcchhHHHHHHH-HhHHHHHHhhhhhhhhhccccccC
Q psy10491 120 LLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPP-GERSFLGGIVYS-GAQFGTIISYPVSGYLAYGTFLQG 196 (520)
Q Consensus 120 ~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~-~~rg~~~~~~~~-~~~~G~~~g~~l~~~l~~~~~~~g 196 (520)
++.++...... .+++.|+++|++.+...+...+++.|++|+ ++|+...+.... ...+|..+++.+++.+... ...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 162 (338)
T COG0477 84 LLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWG 162 (338)
T ss_pred HHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc
Confidence 77777741135 999999999999999999999999999987 689999999988 5888999999888777654 3368
Q ss_pred cchHHHHHHHHHHH
Q psy10491 197 WPAIFYVFGVICLI 210 (520)
Q Consensus 197 wr~~f~i~~~~~~~ 210 (520)
||+.|.+.......
T Consensus 163 ~~~~~~~~~~~~~~ 176 (338)
T COG0477 163 WRAAFLLAALLGLL 176 (338)
T ss_pred hHHHHHHHHHHHHH
Confidence 99977776665544
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.6e-08 Score=99.19 Aligned_cols=180 Identities=14% Similarity=0.118 Sum_probs=118.0
Q ss_pred hccchhHHHHHHHHHHHHH----HHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy10491 260 IVKSGPFLSILVAHMGQNF----GYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILST 335 (520)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 335 (520)
.+++++++..+....+... ........++...++ .|-+ ....++.....++..+..++.|+++|.+|||..+
T Consensus 36 ~~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~d-iG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~-- 111 (599)
T PF06609_consen 36 YYRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINAD-IGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFF-- 111 (599)
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh-cCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHH--
Confidence 3456676655444333332 222223445555555 4755 4557778888899999999999999999999987
Q ss_pred cchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhH
Q psy10491 336 GATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGML 414 (520)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i 414 (520)
+.+.++..++.+......+.........+.+.+. +... .......|+.|.+ |....++.....-....+
T Consensus 112 --------i~g~~l~vvG~Iv~atA~~~~~~iag~~l~Gvga-G~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~ 181 (599)
T PF06609_consen 112 --------IIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGA-GVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWI 181 (599)
T ss_pred --------HHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhh-HHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcc
Confidence 6777788888877776665555555555554442 3232 3344467777766 887777665554455556
Q ss_pred HHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy10491 415 APTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGR 459 (520)
Q Consensus 415 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (520)
+|.+...+.. ..+|++.|++..+...+++++.+++.++.
T Consensus 182 ~~~ia~~~~~------~~~WRw~~~~~~i~~~i~~vl~~~fY~PP 220 (599)
T PF06609_consen 182 SPLIAQLFAA------HSGWRWIFYIFIIWSGIALVLIFFFYFPP 220 (599)
T ss_pred cHHHHHHhcc------CCCcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6777666554 56899999999988888777666655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.3e-09 Score=86.47 Aligned_cols=134 Identities=21% Similarity=0.245 Sum_probs=96.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhcccccc
Q psy10491 306 SATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGF 385 (520)
Q Consensus 306 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (520)
.+...++..++.++.+++.||++||+.+ ..+.....++.+...... +.+......++.....+...+..
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~ 72 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVL----------LVGLFIFVLSTAMFALSS-NITVLIIARFLQGFGAAFALVAG 72 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHH----------HHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhH
Confidence 4456778889999999999999999876 344444445544444433 33333333344444445555666
Q ss_pred ceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 386 KVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 386 ~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
.....|..|++ |+++.++.+....++..++|.+.+.+.+ ..+|+..+++.+.+.+++.+..+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 73 AALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ------FLGWRAPFLFLAILALAAFILLAFLL 138 (141)
T ss_pred HHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc------ccchHHHHHHHHHHHHHHHHHHhhcC
Confidence 66777777765 9999999999999999999999999988 56788888888877777766665543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.2e-08 Score=97.80 Aligned_cols=118 Identities=11% Similarity=0.084 Sum_probs=93.2
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHH
Q psy10491 74 TVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHA 152 (520)
Q Consensus 74 ~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~ 152 (520)
+...+.+.....+...++.+++++++||+|+|+.+..+.++.++......+.+.++. .+++..++.|++.+...+...+
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a 342 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS 342 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666777888899999999999999999998888766654443333323355 7788889999999999999999
Q ss_pred HHhhhcCC-------CcchhHHHHHHHHhHHHHHHhhhhhhhhhcc
Q psy10491 153 ILAKWIPP-------GERSFLGGIVYSGAQFGTIISYPVSGYLAYG 191 (520)
Q Consensus 153 ~i~~~~~~-------~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~ 191 (520)
+++|..+. ++.|...+..+....+|..+|+.+++.+.+.
T Consensus 343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~ 388 (444)
T PRK09669 343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW 388 (444)
T ss_pred HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998852 3346778999999999999999999998876
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.9e-08 Score=97.52 Aligned_cols=145 Identities=14% Similarity=0.101 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHH
Q psy10491 39 IGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVF 118 (520)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~ 118 (520)
...++............+...+ ..++.+ ...+++..+..++..++.+++++++||+|+|+++..+.++.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~y~~~-------~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~ 303 (428)
T PF13347_consen 232 LAFFLQWLAFALMNTFLPYYFT-------YVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALG 303 (428)
T ss_pred HHHHHHHhhhhhhhhHHHHHHH-------HHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHH
Confidence 3344444444444444555552 234433 67788888999999999999999999999999999999999999
Q ss_pred HHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCC-------CcchhHHHHHHHHhHHHHHHhhhhhhhhhc
Q psy10491 119 ALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPP-------GERSFLGGIVYSGAQFGTIISYPVSGYLAY 190 (520)
Q Consensus 119 ~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~-------~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~ 190 (520)
.++..+.+.++. .+++.-++.|++.+..++...++++|..+. ++.|...|..+....+|..+++.+.+.+.+
T Consensus 304 ~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 304 FLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 999988843455 999999999999999999999999999863 345899999999999999999999888876
Q ss_pred c
Q psy10491 191 G 191 (520)
Q Consensus 191 ~ 191 (520)
.
T Consensus 384 ~ 384 (428)
T PF13347_consen 384 L 384 (428)
T ss_pred H
Confidence 5
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.83 E-value=3e-08 Score=96.47 Aligned_cols=162 Identities=14% Similarity=0.071 Sum_probs=105.5
Q ss_pred HHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHH-----Hhhccccccchhhhhhhhhchhhhhhhhh
Q psy10491 282 TLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYF-----IRKKILSTGATRKLMTSIGEYGPGLMFII 356 (520)
Q Consensus 282 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (520)
.....+|.+.++ +|+|..+.++.... .+...+ .++.|++.||+ |||+.+. ..+..+.++....
T Consensus 6 ~~~~~~~~~~~~-~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l---------~~~~~~~~~~~~~ 73 (356)
T TIGR00901 6 LVGNTLPYWLRS-KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWL---------VLTQVLLLSLLLI 73 (356)
T ss_pred hHHhHHHHHHHH-cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHH---------HHHHHHHHHHHHH
Confidence 344567778777 59999999998654 444444 88999999998 6777542 3444444444434
Q ss_pred hhccCC--ChHHHHHHHHHHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHHhHHHHHHHHhhccccc--ccc
Q psy10491 357 PVILGF--THTPTIVCLILAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVGMLAPTISGLLLNWFQH--DEM 431 (520)
Q Consensus 357 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~--~~~ 431 (520)
+.+..+ ..+......++...+.....+....+..|..|+ +|+.+.|+......+|..+++.+.+.+.+..+. ...
T Consensus 74 l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~ 153 (356)
T TIGR00901 74 LSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLI 153 (356)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 444432 222222332233344455556666677777655 499999999999999999999999988872210 001
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Q psy10491 432 LSWKVVFLVSAVLYITCATVYLLF 455 (520)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~ 455 (520)
.+|+..|++.+++.++..+..++.
T Consensus 154 ~~wr~~f~i~ai~~l~~~~~~~~~ 177 (356)
T TIGR00901 154 TLWGYIFFWTALLILPGLLVTLFL 177 (356)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHh
Confidence 239999998888777766555443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-07 Score=88.22 Aligned_cols=324 Identities=12% Similarity=0.049 Sum_probs=172.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHh
Q psy10491 77 RGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILA 155 (520)
Q Consensus 77 ~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~ 155 (520)
.+.+.-+-.+...+.-+.+.++.+|+.-+.-+.+..++..++.++.++++ +. .-+++-++.+++.|..-..-..+.
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~--~v~~~l~Gv~las~ssg~GE~tfL~lt- 137 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSP--SVWVRLLGVVLASLSSGLGEVTFLSLT- 137 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeecc--chhHHHHHHHHHhhhhhhhHHHHHHHH-
Confidence 34455555566677777788889998876666777778888999999985 55 888999999999998877777764
Q ss_pred hhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHH
Q psy10491 156 KWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKE 235 (520)
Q Consensus 156 ~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 235 (520)
..+++ ..++-+..+.+.+.++|+...-.+.+.. .+-|..+++...+.++..+..++.+|.++......+.++..
T Consensus 138 ~~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g--~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~ 211 (402)
T PF02487_consen 138 HFYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLG--LSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESED 211 (402)
T ss_pred HhcCc----cccccccCCcChhhHHHHHHHHHHHHhC--cCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCC
Confidence 46643 3578888888888899988776665521 45578888888877775656666666543322111111100
Q ss_pred HHHhhccCCccc--cccccCccchhhhc-cchhHHHHHHHHHHHHHHHHHHHH-HhHHHHHhhcCCC-cchhHHHHHhHH
Q psy10491 236 YILYSIFGGDII--EDLKASSIPWGDIV-KSGPFLSILVAHMGQNFGYETLMT-MLPTFLKEVLHFD-MIKNGLISATPY 310 (520)
Q Consensus 236 ~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s-~~~~~~~~~~~~ 310 (520)
...+.....+.. +.+...+..+++-+ +-++....++-.+..++..+.++. ..|...-..-..+ ..+..++...+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ 291 (402)
T PF02487_consen 212 EAEDDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQ 291 (402)
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHH
Confidence 000000000000 00111112222211 112222233333333444333322 2333221111111 223345555666
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhh---hhccCCChHHHHHHHHHHHHHhhccccccce
Q psy10491 311 IAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFII---PVILGFTHTPTIVCLILAMACNGGIYAGFKV 387 (520)
Q Consensus 311 ~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (520)
++..+++--..++ |+.+.+. ..+...+-.+.++. +.+.++.+..+..++..|..++.........
T Consensus 292 ~GVFISRSS~~~~--rir~lwi----------ls~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~ 359 (402)
T PF02487_consen 292 LGVFISRSSLPFF--RIRRLWI----------LSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR 359 (402)
T ss_pred HHHhhhhcceeee--ehhhHHH----------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6666654332221 2222111 11211111111111 2222322233334444444444444455555
Q ss_pred eeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHH
Q psy10491 388 NHIDISPCFAGILMSITNCSANVVGMLAPTISGL 421 (520)
Q Consensus 388 ~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~ 421 (520)
...+..+++|..++|.....-.+|..++..+.-+
T Consensus 360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5667777789999999988888888877766533
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.7e-07 Score=82.89 Aligned_cols=364 Identities=13% Similarity=0.090 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhc-----ccCcc
Q psy10491 31 HWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTK-----NHDSH 105 (520)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~D-----r~Grr 105 (520)
+..+..+.+.+...+......+ .+|.+. +.-|.|.++.+...-++ .. ...-++|.++.| |+|||
T Consensus 30 ~~~illLl~LYllQGiP~GL~~-~iP~lL--------~ak~vSyt~~a~fS~ay-~P-~sLKllWaPiVDs~y~k~~Grr 98 (510)
T KOG3574|consen 30 RSSILLLLFLYLLQGIPLGLIG-AIPLLL--------QAKGVSYTSQAIFSFAY-WP-FSLKLLWAPIVDSVYSKRFGRR 98 (510)
T ss_pred hhhHHHHHHHHHHcCCchhHhh-hhHHHh--------cCCCcchhhhhhhhhhh-hH-HHHHHHHHhhhHHHHHHhhccc
Confidence 3445556667777777766666 788888 66777887776543322 12 234578899999 99999
Q ss_pred hhHHH-HHHHHHHHHHHHHhHhh---------hHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHh
Q psy10491 106 KMLAY-GMVVNAVFALLVPVSSQ---------SIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGA 174 (520)
Q Consensus 106 ~~l~~-~~~~~~~~~~~~~~~~~---------~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~ 174 (520)
|.-++ +..+.+....+.+...+ .+. .+...-++.-+..+.-..+.-.+.-.+.++++.|-+......+.
T Consensus 99 ksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~ 178 (510)
T KOG3574|consen 99 KSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQ 178 (510)
T ss_pred cceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHH
Confidence 97433 33333333333322110 022 33334455556666677777888888888999999988888888
Q ss_pred HHHHHHhhhhhhhhhccc----cccCcc---------hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhc
Q psy10491 175 QFGTIISYPVSGYLAYGT----FLQGWP---------AIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSI 241 (520)
Q Consensus 175 ~~G~~~g~~l~~~l~~~~----~~~gwr---------~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 241 (520)
+.|..++..+.-.+.... -..+|. ...+..+.+.++...+..+.-+|++.... +|.+.
T Consensus 179 ~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~----~e~~~----- 249 (510)
T KOG3574|consen 179 TAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVD----EELEL----- 249 (510)
T ss_pred hhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhh----hhhhc-----
Confidence 888888776543333210 002332 12234444455544444444333332210 00000
Q ss_pred cCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHH
Q psy10491 242 FGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLN 321 (520)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g 321 (520)
..+......+++++-|.+..+.......-.++.+-....+.-+.+. |++..+.+++..+..-..++.....|
T Consensus 250 -------~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~-Gv~ke~Lal~~v~~~plqI~l~~~~g 321 (510)
T KOG3574|consen 250 -------GIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEH-GVPKEELALIAVPLVPLQIALPLYIG 321 (510)
T ss_pred -------CHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHc-CCChhHheeeeeehhhHHHhhhhhhe
Confidence 1111223456777788888888888888888888888888888885 99988877765444444444444444
Q ss_pred HHHHHHHhhccccccchhhhhh-hhhchhhhhhhhhhhccCC---Ch-----HHHHHHHHHHHHHhhccccccceeeccC
Q psy10491 322 YLADYFIRKKILSTGATRKLMT-SIGEYGPGLMFIIPVILGF---TH-----TPTIVCLILAMACNGGIYAGFKVNHIDI 392 (520)
Q Consensus 322 ~l~dr~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (520)
++... +|++... -|.... ..+..+..+.......... .. .+.+....+..++.-..+...++..+.+
T Consensus 322 k~ta~--~~pl~~~--lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqi 397 (510)
T KOG3574|consen 322 KWTAG--PRPLNVF--LKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQI 397 (510)
T ss_pred eecCC--CCcchHH--HHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Confidence 33221 1111100 000000 1111111111111111111 00 1111112222333333344445555666
Q ss_pred CCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccc
Q psy10491 393 SPCF-AGILMSITNCSANVVGMLAPTISGLLLNWF 426 (520)
Q Consensus 393 ~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 426 (520)
.+.. .|+.+.+.|+..++|+---..+..++.|.+
T Consensus 398 sdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 398 SDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred CCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 6555 999999999999999988888999999965
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-08 Score=92.50 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=99.3
Q ss_pred HHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhH-H--HHHHHHHHHhccccCchhhHHHHHhhhcCCC
Q psy10491 85 FYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSI-W--CLAAVRFIQGMGEGPIVPCTHAILAKWIPPG 161 (520)
Q Consensus 85 ~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~-~--~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~ 161 (520)
.+.-..|.++.+++.||+|||++|..+.+++++..++...+.+.+ + ++..+|++.. +.+.+.+.|..|.+|.+
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafis----g~fqvaYvYtPEVyPTa 466 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFIS----GAFQVAYVYTPEVYPTA 466 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHh----chheEEEEecCcccchh
Confidence 455678889999999999999999999999999998887774322 2 6666776654 34566789999999999
Q ss_pred cchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcC
Q psy10491 162 ERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYEN 222 (520)
Q Consensus 162 ~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~ 222 (520)
-|+...|.-+.+.-+|.++.|+++ ...+ .+-..+..+.+.+.++..+...++--|+
T Consensus 467 vRatgvGtcSsmaRIggI~~p~iA-~~~e----~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 467 VRATGVGTCSSMARIGGIFSPVIA-MRAE----LSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred hhhcchhhhhhHHhhhhhhhhHHH-HHhc----cceeehHHHHHHHHHHHHHHheeeeecc
Confidence 999999999999999999999999 3333 3445566677777777555555443344
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=95.66 Aligned_cols=124 Identities=12% Similarity=-0.040 Sum_probs=108.9
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHh--------hhHH-HHHHHHHH
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSS--------QSIW-CLAAVRFI 138 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~--------~~~~-~l~~~r~l 138 (520)
+.+|.++.+.|++.+...++..++....+++.+|++.|+++.++.++.+++.+...... -.+. .++..-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 57899999999999999999999999999999999999999999999988875543110 0134 56667788
Q ss_pred HhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcc
Q psy10491 139 QGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYG 191 (520)
Q Consensus 139 ~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~ 191 (520)
.+++.+....+...++.+..|++++|...++.+...++|..+++.+++.+.+.
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET 413 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89998888999999999999999999999999999999999999999999886
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-08 Score=93.77 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=87.8
Q ss_pred CCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHH
Q psy10491 297 FDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMA 376 (520)
Q Consensus 297 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (520)
.+...+|++.+.+.+...+.++..|.++||+|||..+ .++....++....++...+ ...++..=+.++.
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvl----------l~c~~~va~s~ll~~~S~~-F~afv~aR~l~Gi 133 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVL----------LACLIGVALSYLLWALSRN-FAAFVLARFLGGI 133 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHH----------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhh
Confidence 3556789999999999999999999999999999987 5666666666655554432 2122221223332
Q ss_pred HhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 377 CNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 377 ~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
.-.......+++.|+.+++ |+.+++..++...+|-++||.++|++..
T Consensus 134 -~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 134 -FKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred -ccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 3445566677888888766 9999999999999999999999999887
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.4e-07 Score=83.12 Aligned_cols=178 Identities=15% Similarity=0.139 Sum_probs=133.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhccc-C
Q psy10491 25 KGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNH-D 103 (520)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~-G 103 (520)
++++..|.+.+-+.+-.+.. +..-.=+|.+. .|-|+|..+.|++.+...+.....++....+++|. .
T Consensus 205 w~~~~aW~vtLfmGlqS~~~----Y~~~~WLP~il--------i~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n 272 (395)
T COG2807 205 WRSPLAWQVTLFMGLQSLLY----YIVIGWLPAIL--------IDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKN 272 (395)
T ss_pred ccCchhHHHHHHHHhhHHHH----HHHHHHHHHHH--------HHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444555554444433332 22333367777 78999999999999999999999999999999964 6
Q ss_pred cchhHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhccccCchhhHHHHHhhhcCCC-cchhHHHHHHHHhHHHHHHhh
Q psy10491 104 SHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPG-ERSFLGGIVYSGAQFGTIISY 182 (520)
Q Consensus 104 rr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~-~rg~~~~~~~~~~~~G~~~g~ 182 (520)
+|+..+....++.++...+.+.+.+.+.+- -++.|+|.|..++.+..++.+..+.. +-++..++.+....+=..+||
T Consensus 273 ~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP 350 (395)
T COG2807 273 QRPLVVLALLLMLVGLVGLLLAPGQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGP 350 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhh
Confidence 677777788888888888888863333222 49999999999999999999988644 456666777777777778899
Q ss_pred hhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHH
Q psy10491 183 PVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFL 218 (520)
Q Consensus 183 ~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~ 218 (520)
.+.|++-+.. .+|+.+++..+...+++.+..+..
T Consensus 351 ~l~G~lhDa~--gsw~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 351 WLFGFLHDAT--GSWSAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred hhHhHHHHhc--CChHHHHHHHHHHHHHHHHHHhhc
Confidence 9999998864 699999988887777755555544
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.4e-08 Score=97.78 Aligned_cols=153 Identities=17% Similarity=0.266 Sum_probs=118.5
Q ss_pred hhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCCh-HHHHHHH
Q psy10491 293 EVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTH-TPTIVCL 371 (520)
Q Consensus 293 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 371 (520)
..+.++..+-+++++....+.+++.+..|++.||+|.|+++ ..+.++.++..++..+..... +..+++=
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~----------~~~~~~sa~~t~l~P~aa~~~~~~~~~~R 135 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVF----------FISGLISALLTLLTPLAASIGFYLLLVLR 135 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHH----------HHHHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 35788999999999999999999999999999999999987 566666666665555443322 3333343
Q ss_pred HHHHHHhhccccccceeeccC-CCCcchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHH
Q psy10491 372 ILAMACNGGIYAGFKVNHIDI-SPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCAT 450 (520)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~-~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (520)
++-+...+..++....+...- +|++|++..++.....++|.+++-++.|.+.+ ...||+..|++.+++.++..+
T Consensus 136 ~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~-----s~~GW~sifY~~g~~g~i~~~ 210 (466)
T KOG2532|consen 136 FLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE-----SSLGWPSIFYVFGIVGLIWFI 210 (466)
T ss_pred HHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-----cCCCCchHHHHHHHHHHHHHH
Confidence 444444566666666666655 45569999999999999999999999999999 248999999999999999888
Q ss_pred HHHHhcCCCc
Q psy10491 451 VYLLFSSGRK 460 (520)
Q Consensus 451 ~~~~~~~~~~ 460 (520)
+++.+...+.
T Consensus 211 ~w~~~~~d~P 220 (466)
T KOG2532|consen 211 LWFLFYSDSP 220 (466)
T ss_pred HHHHHhcCCc
Confidence 8777765443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-06 Score=85.25 Aligned_cols=187 Identities=14% Similarity=0.112 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhh
Q psy10491 267 LSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIG 346 (520)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 346 (520)
+.....-+..+........|+..|+.+..|.++..+|.++.+.-+...+.-++.|.++||..+|+-- ||.++..+
T Consensus 15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Gr-----fRP~lL~g 89 (467)
T COG2211 15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGR-----FRPWLLWG 89 (467)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeeccccccccc-----ccHHHHHH
Confidence 3455556666677777888999999999999999999999999999999999999999975543322 23334555
Q ss_pred chhhhhhhhhhhccCC-----ChHHHHHHHHHHHHHhhccccccceeeccCCC--CcchhHHHHHHHHHhhHHhHHHHHH
Q psy10491 347 EYGPGLMFIIPVILGF-----THTPTIVCLILAMACNGGIYAGFKVNHIDISP--CFAGILMSITNCSANVVGMLAPTIS 419 (520)
Q Consensus 347 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~g~~~g~~~~~~~~g~~i~~~~~ 419 (520)
.+..++...+....++ ......+...+...+......+..++..++.+ ++|.+..+.-..+..+|..+...+.
T Consensus 90 ~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~ 169 (467)
T COG2211 90 AIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLF 169 (467)
T ss_pred hHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444444442 12333333333334445666666677777665 4599999999999999988888888
Q ss_pred HHhhccccccc-cchhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy10491 420 GLLLNWFQHDE-MLSWKVVFLVSAVLYITCATVYLLFSSG 458 (520)
Q Consensus 420 g~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (520)
+.+...++..+ ..+|+....+.+++.++..+.+++-.++
T Consensus 170 ~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~E 209 (467)
T COG2211 170 PPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKE 209 (467)
T ss_pred HHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88887664333 6788888888888877777776665443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-06 Score=81.55 Aligned_cols=165 Identities=17% Similarity=0.093 Sum_probs=116.2
Q ss_pred HHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhcc
Q psy10491 281 ETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVIL 360 (520)
Q Consensus 281 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (520)
...+.-+...+++.++.+..+++++......+..+.++..+++.+|+|+|+.+ ..++.+.++++.++.-.
T Consensus 29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi----------~lgL~l~avg~~lF~pA 98 (422)
T COG0738 29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGI----------VLGLLLYAVGAALFWPA 98 (422)
T ss_pred hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHH----------HHHHHHHHHHHHHHhhh
Confidence 34444555566777999999999999999999999999999999999999987 68888888887776533
Q ss_pred CCC--hHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccc-----c-----
Q psy10491 361 GFT--HTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWF-----Q----- 427 (520)
Q Consensus 361 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~-----~----- 427 (520)
... ...+.+.+++...+.+........++..+.+++ ...-+.+.+.+..+|++++|.+.+.+..+- .
T Consensus 99 a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~ 178 (422)
T COG0738 99 ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQIL 178 (422)
T ss_pred hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHH
Confidence 332 233333333333334555556666666666654 777789999999999999999999988731 0
Q ss_pred ---ccccchhHHHHHHHHHHHHHHHHHHHHh
Q psy10491 428 ---HDEMLSWKVVFLVSAVLYITCATVYLLF 455 (520)
Q Consensus 428 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (520)
......++..|...+...++..+.....
T Consensus 179 ~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~ 209 (422)
T COG0738 179 AIKGADASSVQFPYLILAGLLVLLAVLILLS 209 (422)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Confidence 0012235566666666666655554443
|
|
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.5e-07 Score=84.18 Aligned_cols=374 Identities=12% Similarity=0.100 Sum_probs=217.3
Q ss_pred CCCCCChhhhH-HHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccC
Q psy10491 68 DSKSWSTVERG-LLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGP 145 (520)
Q Consensus 68 ~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~ 145 (520)
.+.+++..++. =+.-+..-.+.+.-.+.=.+.|..--|+++++-.+.......+.-+.+ +. .+=+.-++-|...+
T Consensus 34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~--sV~~mQvlE~FyG~~tA- 110 (433)
T KOG3810|consen 34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGP--SVKAMQVLEFFYGPATA- 110 (433)
T ss_pred CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcC--CchheeeehhhcChHHH-
Confidence 45566666542 233344445566677777899999889888776666666666666664 54 77778888888865
Q ss_pred chhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy10491 146 IVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHS 225 (520)
Q Consensus 146 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~ 225 (520)
.-.+-++++-+..+|+++.++.+...+..-.|..+|..++..+.... ..++...-.+... ...+..+..+++|..++.
T Consensus 111 aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~-~~sy~~LN~ISL~-~~~ia~~~A~fLP~v~rS 188 (433)
T KOG3810|consen 111 AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLE-TLSYTTLNYISLA-EVTIAVLLALFLPRVKRS 188 (433)
T ss_pred HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhc-ccchhhhchhhHH-HHHHHHHHHhhCCCCchh
Confidence 56778899999999999999999999999999999999998888751 0233333333222 233345556667766533
Q ss_pred CCCCChHHHHHHHhhccCCccccccc--------cCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcC-
Q psy10491 226 DKRVSVEEKEYILYSIFGGDIIEDLK--------ASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLH- 296 (520)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 296 (520)
.-..+.+++.. ..+.++...+++.. .-...+.+..++|++....+.+.+..++++...++....-.+...
T Consensus 189 l~f~~~~~~~~-v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~ 267 (433)
T KOG3810|consen 189 LYFHRLEDKIS-VGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPN 267 (433)
T ss_pred hhhhcccccce-eccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCC
Confidence 21111111110 11111000000000 011233445678888888888888888888888777666666521
Q ss_pred CCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHH
Q psy10491 297 FDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMA 376 (520)
Q Consensus 297 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (520)
-.....|..-++..+.+.++.+..|.+--.+.|..-+ ++..+.+..+..++.+....+-++.....+++...
T Consensus 268 ~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~--------ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~ 339 (433)
T KOG3810|consen 268 PANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDL--------LLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVI 339 (433)
T ss_pred chhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHH--------HHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhh
Confidence 1112235566666777777888888875444443222 12455555555555555554433333333333333
Q ss_pred HhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhc--cc---cccccchhHHHHHHHHHHHHHHHHH
Q psy10491 377 CNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLN--WF---QHDEMLSWKVVFLVSAVLYITCATV 451 (520)
Q Consensus 377 ~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (520)
...........+..++..+.-|..+|+..++.-+-..+-..+ ..| .+ ......-|..-|.+.+++.+++..+
T Consensus 340 y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~ 416 (433)
T KOG3810|consen 340 YQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGI 416 (433)
T ss_pred HhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHH
Confidence 333333333444455666668888888666554444433332 233 00 1112233455677888888887766
Q ss_pred HHHhcCC
Q psy10491 452 YLLFSSG 458 (520)
Q Consensus 452 ~~~~~~~ 458 (520)
.....++
T Consensus 417 ~~~~~~~ 423 (433)
T KOG3810|consen 417 EYLMCRR 423 (433)
T ss_pred HHHHhhc
Confidence 5554443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-06 Score=87.97 Aligned_cols=179 Identities=12% Similarity=0.041 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHH----Hhhccccccchhhhhh
Q psy10491 268 SILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYF----IRKKILSTGATRKLMT 343 (520)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----g~~~~~~~~~~~~~~~ 343 (520)
...+.-+..+..+..+..|+..|+.+..|+++..+|.++.+.-+...+.-++.|+++||. ||||.. +
T Consensus 13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~---------i 83 (460)
T PRK11462 13 GYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPW---------V 83 (460)
T ss_pred hhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchh---------H
Confidence 334444555666667778999999999999999999999999999999999999999974 555554 3
Q ss_pred hhhchhhhhhhhhhhccCCC---h--HHHHHHHHHHHHHhhccccccceeeccCCCC--cchhHHHHHHHHHhhHHhHHH
Q psy10491 344 SIGEYGPGLMFIIPVILGFT---H--TPTIVCLILAMACNGGIYAGFKVNHIDISPC--FAGILMSITNCSANVVGMLAP 416 (520)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~g~~~g~~~~~~~~g~~i~~ 416 (520)
.++....++.+.++...++. . ....+..++...+......+..++..++.++ +|++..+.......+|..+++
T Consensus 84 l~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~ 163 (460)
T PRK11462 84 LFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLST 163 (460)
T ss_pred hHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444433321 1 1222222222333344555666666776654 499999999999999888888
Q ss_pred HHHHHhhcccc-ccccchhHHHHHHHHHHHHHHHHHHHHh
Q psy10491 417 TISGLLLNWFQ-HDEMLSWKVVFLVSAVLYITCATVYLLF 455 (520)
Q Consensus 417 ~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (520)
.+...+....+ .....+|.....+.+++.+++..+++..
T Consensus 164 ~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~ 203 (460)
T PRK11462 164 VLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFT 203 (460)
T ss_pred HHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 87766655332 1122456666666666666665554443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.3e-07 Score=80.09 Aligned_cols=134 Identities=13% Similarity=0.039 Sum_probs=90.9
Q ss_pred HHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhh
Q psy10491 279 GYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPV 358 (520)
Q Consensus 279 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (520)
..+.+..|.|..- +.+|+|..+...+.....++..+ .++.|.+.|++|++..+ .++.+...++...+.
T Consensus 17 t~Y~Fs~yS~~Lk-~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l----------~iG~~~~~~GY~~~~ 84 (250)
T PF06813_consen 17 TTYTFSAYSPQLK-SRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVL----------LIGAVLGFVGYGLLW 84 (250)
T ss_pred cccchhhhhHHHH-HHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHH----------HHHHHHHHHHHHHHH
Confidence 4455656666554 56899999999999999999877 48889999999998876 456565555555443
Q ss_pred ccCC-----Ch-HHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 359 ILGF-----TH-TPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 359 ~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
..-. .. +.......++................+.+|++||++.|+.-....+++++-..+...+.+
T Consensus 85 l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 85 LAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred HHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 3221 11 222222223222222222333334446789999999999999999999998888888777
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.7e-07 Score=65.97 Aligned_cols=75 Identities=15% Similarity=0.263 Sum_probs=70.2
Q ss_pred HHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHH
Q psy10491 44 AYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVP 123 (520)
Q Consensus 44 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~ 123 (520)
.+..++.+++++|.+. +|.++|.++.||+.+.+++||.+|.+...++.++..+++.+..+++...+..+.++
T Consensus 4 mGigRFayTplLP~M~--------~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma 75 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQ--------ADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA 75 (85)
T ss_pred hhhHHHHHHhHhHHHH--------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999 89999999999999999999999999999999998889999999999999999999
Q ss_pred hHh
Q psy10491 124 VSS 126 (520)
Q Consensus 124 ~~~ 126 (520)
+..
T Consensus 76 ~~~ 78 (85)
T PF06779_consen 76 LTH 78 (85)
T ss_pred HHh
Confidence 984
|
Note that many members are hypothetical proteins. |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.6e-07 Score=88.27 Aligned_cols=143 Identities=17% Similarity=0.247 Sum_probs=126.7
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhccccCch
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIV 147 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~ 147 (520)
+|.+-.+...|........+-.+.-++.+++..++|+-+++.+++.+..+=.+..+... |-|+.+...+++|+..+..+
T Consensus 399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~-n~W~vLPieilqgit~aliW 477 (618)
T KOG3762|consen 399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ-NPWMVLPIEILQGITHALIW 477 (618)
T ss_pred hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc-CchheeeHHHHHHHHHHHHH
Confidence 57777777788777788888889999999999999999999999999999888888884 44499999999999999999
Q ss_pred hhHHHHHhhhcCCCcchhHHHHHHH-HhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHH
Q psy10491 148 PCTHAILAKWIPPGERSFLGGIVYS-GAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVL 214 (520)
Q Consensus 148 ~~~~~~i~~~~~~~~rg~~~~~~~~-~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~ 214 (520)
.+..+|+++..||+-|..+.++.+. ..++|--+|++|||.+.+. ++=|..|.+.++.+++..++
T Consensus 478 aa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~---fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 478 AAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER---FGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred HHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee---ehhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875 4579999999999999998 89999999998888874443
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.2e-07 Score=93.34 Aligned_cols=142 Identities=14% Similarity=0.117 Sum_probs=108.9
Q ss_pred hcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHH
Q psy10491 294 VLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLIL 373 (520)
Q Consensus 294 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (520)
....+.....+..++..++..+|.++.|.++||+|||+.+ ..++++..++.+..++.++.....+.=++.
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~----------~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~ 181 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVL----------LVSLLLFIIFGILTAFAPNYWMFLIFRFLS 181 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHH----------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 3466777788889999999999999999999999999987 577777777776666666444444444444
Q ss_pred HHHHhhccccccceeeccCC-CCcchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHH
Q psy10491 374 AMACNGGIYAGFKVNHIDIS-PCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVY 452 (520)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~-p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (520)
+ ++..........+..|.. |++|+.+..+ ......++.+++...+++.. +|++.+++..+...+..+..
T Consensus 182 G-~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~Wr~~~~~~~~~~~~~~~~~ 251 (521)
T KOG0255|consen 182 G-FFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DWRWLFWIISIPSGLFLLLW 251 (521)
T ss_pred H-hhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHH
Confidence 4 444555556666666655 5559999999 88889999999999999887 89999999988888877764
Q ss_pred HHh
Q psy10491 453 LLF 455 (520)
Q Consensus 453 ~~~ 455 (520)
++.
T Consensus 252 ~l~ 254 (521)
T KOG0255|consen 252 FLP 254 (521)
T ss_pred Hcc
Confidence 433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-05 Score=76.22 Aligned_cols=155 Identities=16% Similarity=0.188 Sum_probs=126.9
Q ss_pred eeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhc-ccCcchhHHHHHHHHHHHHHHHHhHhhh-H-HHH
Q psy10491 56 VAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTK-NHDSHKMLAYGMVVNAVFALLVPVSSQS-I-WCL 132 (520)
Q Consensus 56 ~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~D-r~Grr~~l~~~~~~~~~~~~~~~~~~~~-~-~~l 132 (520)
..+.||+.. +-||.+..+...+......|..++-...|++.. |.++|+...+++....++..+..++... + +.+
T Consensus 228 D~iLEPygg---~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~ 304 (403)
T PF03209_consen 228 DVILEPYGG---EVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLF 304 (403)
T ss_pred HHHcCCchh---HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 344555554 889999999999999999999999999999988 6788888888888888877776555321 3 488
Q ss_pred HHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcc-------ccccCcchHHHHHH
Q psy10491 133 AAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYG-------TFLQGWPAIFYVFG 205 (520)
Q Consensus 133 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~-------~~~~gwr~~f~i~~ 205 (520)
...-++.|++.|.......+...|...+++.|..+|.+.....++..+|..+++.+.+. ....+|-.+|.+.+
T Consensus 305 ~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa 384 (403)
T PF03209_consen 305 RPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEA 384 (403)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999887763 12246777887777
Q ss_pred HHHHHHHH
Q psy10491 206 VICLIWCV 213 (520)
Q Consensus 206 ~~~~~~~~ 213 (520)
+..++...
T Consensus 385 ~ll~~a~~ 392 (403)
T PF03209_consen 385 VLLLAALV 392 (403)
T ss_pred HHHHHHHH
Confidence 76665333
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00097 Score=66.49 Aligned_cols=286 Identities=12% Similarity=0.047 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHH-HHHHhhhhhhhhhcccCcchhHH
Q psy10491 31 HWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFY-GYVLTQIPIGLLTKNHDSHKMLA 109 (520)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~Dr~Grr~~l~ 109 (520)
+.-++.+.+..++..++....-..-..+.. +.. .++.+..+=....+ +..+...+..+++++++|.+++-
T Consensus 23 ~~k~~~l~~m~f~i~f~y~~lR~~KD~lvv-------t~~--gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy 93 (491)
T PF03219_consen 23 LKKFLPLALMFFFILFNYTILRDLKDTLVV-------TAQ--GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFY 93 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeEEE-------ecC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 344445555555555555544444443331 222 45566666554444 44566778999999999999987
Q ss_pred HHHHHHHHHHHHHHhHh--------h----------------------hHHHHHHHHHHHhccccCchh-hHHHHHhhhc
Q psy10491 110 YGMVVNAVFALLVPVSS--------Q----------------------SIWCLAAVRFIQGMGEGPIVP-CTHAILAKWI 158 (520)
Q Consensus 110 ~~~~~~~~~~~~~~~~~--------~----------------------~~~~l~~~r~l~G~g~~~~~~-~~~~~i~~~~ 158 (520)
+.+..+.....++++.- + ++|.+.+.-++.-+-.....+ .-..+..|.+
T Consensus 94 ~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~it 173 (491)
T PF03219_consen 94 IIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEIT 173 (491)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77766666655555530 0 122222222333333233233 3467889999
Q ss_pred CCCcchhHHHHHHHHhHHHHHHhhhhhhhhhc------cccccCcchHHHH----HHHHHHHHHHHHHHHhhcCCCCCCC
Q psy10491 159 PPGERSFLGGIVYSGAQFGTIISYPVSGYLAY------GTFLQGWPAIFYV----FGVICLIWCVLFIFLVYENPHSDKR 228 (520)
Q Consensus 159 ~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~------~~~~~gwr~~f~i----~~~~~~~~~~~~~~~~~e~~~~~~~ 228 (520)
+.+|-.+..+++..+.++|.++++.+..++.+ ..+...|...+.. ..+.+++ .+.....+.+.....+.
T Consensus 174 t~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~-i~~~~~~~~~~vl~~~~ 252 (491)
T PF03219_consen 174 TVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIV-IILLYRYMNKNVLTDPR 252 (491)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCccc
Confidence 99999999999999999999999999888887 1111356543322 2222222 22222333322111111
Q ss_pred CChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchh---HHH
Q psy10491 229 VSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKN---GLI 305 (520)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---~~~ 305 (520)
..+..++ +..++.+.....+.+.++++|.+..+++...+++.....+....-..+++.+.-+.... |-.
T Consensus 253 ~~~~~~~--------~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~ 324 (491)
T PF03219_consen 253 FYPSAKK--------KKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKF 324 (491)
T ss_pred cchhhhc--------ccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 0000000 00000122233556778889999888888888888888887777777776654332222 444
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy10491 306 SATPYIAMFITSSVLNYLADYFIRKKILS 334 (520)
Q Consensus 306 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 334 (520)
....++..++..++++.+.+|+|-+....
T Consensus 325 ~~~tGivtii~~~l~~~iir~~GW~~~Al 353 (491)
T PF03219_consen 325 SSWTGIVTIIMMFLSSNIIRRFGWRTAAL 353 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 55666777777788888999988877654
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.1e-06 Score=70.06 Aligned_cols=110 Identities=10% Similarity=0.103 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhccccCchhhHHHHHhhhc
Q psy10491 79 LLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILAKWI 158 (520)
Q Consensus 79 ~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~ 158 (520)
.-.++......++.++.+.+.+++|.|+.+++|.+.+.+-.... +-+ +.+.++.+-++.|++.+..+.+...++.+..
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~-~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s 118 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYP-NSYTLYPASALLGFGAALLWTAQGTYLTSYS 118 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhh-hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence 33456666678888889999999999999999999998655544 443 2449999999999999999999999999999
Q ss_pred CCCcchhHHHHHHHHhHHHHHHhhhhhhhhhc
Q psy10491 159 PPGERSFLGGIVYSGAQFGTIISYPVSGYLAY 190 (520)
Q Consensus 159 ~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~ 190 (520)
++++|++-.+++......+.++|.++...+.+
T Consensus 119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 119 TEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887766654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.1e-07 Score=84.32 Aligned_cols=182 Identities=13% Similarity=0.024 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHH--------HHH-HHHHHHHHhhhhhhhhhccc
Q psy10491 32 WTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGL--------LLS-SFFYGYVLTQIPIGLLTKNH 102 (520)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~--------~~s-~~~~~~~~~~~~~g~l~Dr~ 102 (520)
..++..+..+|+.-...+..+.....+. +..++.+.+... ... +...++..+..+...+.|++
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~--------~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i 375 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIF--------SAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII 375 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHH--------HhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh
Confidence 4455566666665555555555555555 333333322222 111 22233344777788899999
Q ss_pred CcchhHHHHHHHHHHHHHHHHhHhh---hH---H-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhH
Q psy10491 103 DSHKMLAYGMVVNAVFALLVPVSSQ---SI---W-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQ 175 (520)
Q Consensus 103 Grr~~l~~~~~~~~~~~~~~~~~~~---~~---~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~ 175 (520)
|||+..+.+.+++++..+..+...+ +. . .+.+..++.-+| .......+-+|.+|.+-|+..-|+..+..-
T Consensus 376 GRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FParvR~t~hGIsAA~GK 452 (538)
T KOG0252|consen 376 GRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPARVRSTCHGISAASGK 452 (538)
T ss_pred hhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhchHHHhhhhhhHHHHhcc
Confidence 9999999999999999999888842 01 2 344444554454 334456677999999999999999999999
Q ss_pred HHHHHhhhhhhhhhcc--ccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy10491 176 FGTIISYPVSGYLAYG--TFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHS 225 (520)
Q Consensus 176 ~G~~~g~~l~~~l~~~--~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~ 225 (520)
.|.++|...-.++.++ ....+.|++|++.+.++++ .++.-+++||+..+
T Consensus 453 ~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~-gi~~T~l~pEtk~~ 503 (538)
T KOG0252|consen 453 AGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLL-GILFTLLIPETKGK 503 (538)
T ss_pred chHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHH-hHheeEEeeccccc
Confidence 9999999998888882 1117899999999998888 66667778887654
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.7e-06 Score=85.99 Aligned_cols=139 Identities=17% Similarity=0.119 Sum_probs=105.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhcc
Q psy10491 302 NGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGI 381 (520)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (520)
.+++.+...++..++.++.|+++|++|||+.+ .++.+...++.++..+..+.....+.=++. +.+.+..
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l----------~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~-G~g~G~~ 159 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTL----------LLAVVLFLIGAIIIALAPSWYQLIVGRILT-GLGVGGA 159 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-ccchhhh
Confidence 48999999999999999999999999999987 577777777777777666443444444444 4445666
Q ss_pred ccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 382 YAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 382 ~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
......+..|+.|.+ ||...+..+....+|..++ .+.+...+ .. ..+|+..+.+..+.+++..+..++.+
T Consensus 160 ~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~--~~--~~~Wr~~~~~~~i~~~~~~~~~~~~p 230 (513)
T KOG0254|consen 160 SVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTS--KV--YAGWRIPLGLALIPAVILALGMLFLP 230 (513)
T ss_pred hhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhc--cC--CccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 778888899999986 9999999999988877777 55555554 11 14899888888888877777755544
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-06 Score=86.59 Aligned_cols=155 Identities=17% Similarity=0.175 Sum_probs=109.3
Q ss_pred hhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHH
Q psy10491 293 EVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLI 372 (520)
Q Consensus 293 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (520)
+..+....+.+.+.+++.++.+++.+.++.+.||+...+.+ ...+.+...+++ +..... +.+..++.-+
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l---------~~~~~~w~~~~~-~~~~~~-s~~~~ialr~ 142 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGL---------SVSGILWGLFGF-LTAAVH-SFPGLIALRF 142 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHH---------HHHHHHHHHHHH-HHHHHh-hhHHHHHHHH
Confidence 33567778889999999999999999999999999955443 122222222222 222232 3444445445
Q ss_pred HHHHHhhccccccceeeccCCCC-cchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHH
Q psy10491 373 LAMACNGGIYAGFKVNHIDISPC-FAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATV 451 (520)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (520)
+.+.+.+...|....+...-+.+ +||.-+|+.++..++|+++|+.+...+.+.-+.....+|++.|++-+++.++..++
T Consensus 143 llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 143 LLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIV 222 (495)
T ss_pred HHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHhe
Confidence 55555666777776666666655 49999999999999999999999988765223345679999999999998888877
Q ss_pred HHHhcCC
Q psy10491 452 YLLFSSG 458 (520)
Q Consensus 452 ~~~~~~~ 458 (520)
.++..+.
T Consensus 223 ~f~~lp~ 229 (495)
T KOG2533|consen 223 VFFFLPD 229 (495)
T ss_pred EEEEecC
Confidence 6665443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.3e-08 Score=97.08 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=103.7
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccC--CChHHHHHHHHHHHHHh
Q psy10491 301 KNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILG--FTHTPTIVCLILAMACN 378 (520)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 378 (520)
..++..+...++..+|+++.|+++||+|||+.+ .++..+..++.++..+.+ .+.+...+.-++.++..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~ 116 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPAL----------IISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGI 116 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccccccccc----------ccccccccccccccccccccccccccccccccccccc
Confidence 357788999999999999999999999999987 567777777777777666 12333333334444455
Q ss_pred hccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 379 GGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 379 ~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
+...+....+..|..|++ |+...++.+....+|..++..+.-.+.+. .....|+..+.+..+..++..+...++++
T Consensus 117 g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~---~~~~~Wr~~~~~~~~~~l~~~~~~~~~pE 193 (451)
T PF00083_consen 117 GGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY---SDNWGWRILLIFGAIPSLLVLLLRFFLPE 193 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccc
Confidence 677778888888887766 99999999988888887777665433220 11245888888888777666665555554
Q ss_pred C
Q psy10491 458 G 458 (520)
Q Consensus 458 ~ 458 (520)
.
T Consensus 194 S 194 (451)
T PF00083_consen 194 S 194 (451)
T ss_pred c
Confidence 3
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.2e-05 Score=73.35 Aligned_cols=376 Identities=16% Similarity=0.144 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHHhhhheeeeeccCCCCCcccCC--CCCChhhhHHHHHHHHHHHHHhhhhhhhhhc-----ccCcchhH
Q psy10491 36 MLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDS--KSWSTVERGLLLSSFFYGYVLTQIPIGLLTK-----NHDSHKML 108 (520)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~D-----r~Grr~~l 108 (520)
++.+.+++.+.-.......+|.+. ++ -+.|.+|.|..+- ....+. .-++|.++.| |+||||.-
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL--------~~~~~~~sy~q~~~fSl-a~~PfS-lKlLWaPiVDs~y~~~~GRRKSW 73 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLL--------QSMAKKVSYSQQAIFSL-ASYPFS-LKLLWAPIVDSVYSKRIGRRKSW 73 (544)
T ss_pred HHHHHHHHcCcccccccccchhhh--------ccccCCCChhHheeeee-eechhH-HHHhhhhhhhhhcccccCCcchh
Confidence 455566666655554435678777 44 5778888766432 111211 2345666655 89999975
Q ss_pred HH-HHHHHHHHHHHHHhHh---------------h--h-----HH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcch
Q psy10491 109 AY-GMVVNAVFALLVPVSS---------------Q--S-----IW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERS 164 (520)
Q Consensus 109 ~~-~~~~~~~~~~~~~~~~---------------~--~-----~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg 164 (520)
++ .-.+.++..+..+... . + +. .+...-++.=+-.+--..+.-.+.-.+..+++++
T Consensus 74 iiP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~ 153 (544)
T PF13000_consen 74 IIPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVG 153 (544)
T ss_pred hhHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcc
Confidence 44 2233333332222211 0 0 11 1122222222233444455556666677888999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhhhhccc----------cccCc---chHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCh
Q psy10491 165 FLGGIVYSGAQFGTIISYPVSGYLAYGT----------FLQGW---PAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSV 231 (520)
Q Consensus 165 ~~~~~~~~~~~~G~~~g~~l~~~l~~~~----------~~~gw---r~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 231 (520)
.+......+.++|..++..+.-.+.+.. .+.|. ..-..+.+...++..+...++-+|.|......+.
T Consensus 154 ~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~ 233 (544)
T PF13000_consen 154 YASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKI 233 (544)
T ss_pred hHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCccc
Confidence 8888888888888777766544443210 00111 1112233444455455556666676543221110
Q ss_pred H--H-HHHHHhh----ccCCcc--ccc---cccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCc
Q psy10491 232 E--E-KEYILYS----IFGGDI--IED---LKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDM 299 (520)
Q Consensus 232 ~--~-~~~~~~~----~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 299 (520)
+ + .+...++ ..+... .++ .+..-....+++|-|++..+.+..+..-.++.........-+.+. |++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlEk-G~~K 312 (544)
T PF13000_consen 234 EPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLEK-GLSK 312 (544)
T ss_pred cccccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHHc-CCCH
Confidence 0 0 0000000 000000 000 011112345567788888888888888888877777777777784 9998
Q ss_pred chhHHHHHhHHHHHHHHHHHHHHHHHHHHhhcccc--------------------cc---chhhhhh-hhh-chhhhhhh
Q psy10491 300 IKNGLISATPYIAMFITSSVLNYLADYFIRKKILS--------------------TG---ATRKLMT-SIG-EYGPGLMF 354 (520)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~--------------------~~---~~~~~~~-~~~-~~~~~~~~ 354 (520)
.+.+.+. +..+...++.|+++.|+-+.+... .+ .-+.+.- ..+ ++...++.
T Consensus 313 E~LAl~~----li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~ 388 (544)
T PF13000_consen 313 EDLALLV----LIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQ 388 (544)
T ss_pred HHhHHHH----HHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHH
Confidence 8866654 445555555666655553322210 00 0000000 000 01111111
Q ss_pred hhhhccC-CC--h----HHHHHHHHHHHHHhhccccccceeeccCC-CCcchhHHHHHHHHHhhHHhHHHHHHHHhhccc
Q psy10491 355 IIPVILG-FT--H----TPTIVCLILAMACNGGIYAGFKVNHIDIS-PCFAGILMSITNCSANVVGMLAPTISGLLLNWF 426 (520)
Q Consensus 355 ~~~~~~~-~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 426 (520)
......+ +. . ...++.-++.-+..-..+....+..+.+. |.--|+.|.+.|++.|+|+---..+.=++.|.+
T Consensus 389 ~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f 468 (544)
T PF13000_consen 389 LIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF 468 (544)
T ss_pred heEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence 1112223 11 1 12222233333444444555555555555 445999999999999999988777877888865
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.7e-05 Score=80.60 Aligned_cols=170 Identities=16% Similarity=0.088 Sum_probs=118.2
Q ss_pred HHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHH-HHhhccccccchhhhhhhhhchhhhhhhhhh
Q psy10491 279 GYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADY-FIRKKILSTGATRKLMTSIGEYGPGLMFIIP 357 (520)
Q Consensus 279 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (520)
+++++...+..|+.+.+|++...+..+...+....-+..+++|+++|+ +|+++.+ .++.++..++..++
T Consensus 2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tI----------l~~~ii~~lG~~ll 71 (654)
T TIGR00926 2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTI----------LYLSIVYVVGHALL 71 (654)
T ss_pred ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----------HHHHHHHHHHHHHH
Confidence 356677778888888889999988888888887788889999999997 6777766 45555555555444
Q ss_pred hccCCC-------hHHHHHHHHHHHHHhhccccccceeeccCCCC----cchhHHHHHHHHHhhHHhHHHHHHHHhhccc
Q psy10491 358 VILGFT-------HTPTIVCLILAMACNGGIYAGFKVNHIDISPC----FAGILMSITNCSANVVGMLAPTISGLLLNWF 426 (520)
Q Consensus 358 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 426 (520)
...... ....+..+.+..++.+..-+...+...+.+++ ++-..+.++..+.++|+.+++.+.+++.+..
T Consensus 72 ai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~ 151 (654)
T TIGR00926 72 SFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV 151 (654)
T ss_pred HhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 432111 12233444455555666777777777665543 2677888888999999999999999987511
Q ss_pred cc-cccchhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy10491 427 QH-DEMLSWKVVFLVSAVLYITCATVYLLFSSG 458 (520)
Q Consensus 427 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (520)
+. ....+|..+|.+.+++++++.++....++.
T Consensus 152 ~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~ 184 (654)
T TIGR00926 152 GCFGCQDCYPLAFGVPAILMILALIVFMAGSKM 184 (654)
T ss_pred cccccCcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00 112468899999999888888776655443
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00078 Score=68.66 Aligned_cols=142 Identities=17% Similarity=0.134 Sum_probs=113.3
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcc-cCcchhHHHHHHHHHHHHHHHHhHhh-------------------
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKN-HDSHKMLAYGMVVNAVFALLVPVSSQ------------------- 127 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~------------------- 127 (520)
++++.+...+.-..+.+.-......+..+.++|- +||-+++.++.++..+|..+..+...
T Consensus 66 ~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~ 145 (571)
T KOG1237|consen 66 LELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCE 145 (571)
T ss_pred HHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCccc
Confidence 6788788888888888888888889999999996 58999999999988888655443310
Q ss_pred --h--HH-HHHHHHHHHhccccCchhhHHHHHhhhcC---CC---cchhHHHHHHHHhHHHHHHhhhhhhhhhccccccC
Q psy10491 128 --S--IW-CLAAVRFIQGMGEGPIVPCTHAILAKWIP---PG---ERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQG 196 (520)
Q Consensus 128 --~--~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~---~~---~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~g 196 (520)
+ .. .+..+.-+..+|.|+.-+...++-+|-++ ++ ++...+.++....+.|..++..+..+.-+. .+
T Consensus 146 ~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~---~~ 222 (571)
T KOG1237|consen 146 SPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN---VG 222 (571)
T ss_pred CcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc---cc
Confidence 1 13 67777788889999999999999999998 32 233678888899999999998888888776 89
Q ss_pred cchHHHHHHHHHHHHH
Q psy10491 197 WPAIFYVFGVICLIWC 212 (520)
Q Consensus 197 wr~~f~i~~~~~~~~~ 212 (520)
|.+.|.+......+..
T Consensus 223 w~lgf~i~~~~~~lai 238 (571)
T KOG1237|consen 223 WKLGFGIPTVLNALAI 238 (571)
T ss_pred ceeeccHHHHHHHHHH
Confidence 9999988877776633
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0039 Score=60.64 Aligned_cols=252 Identities=10% Similarity=-0.035 Sum_probs=145.7
Q ss_pred ChhhhHHHHHHHHH-HHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhh----------------------h-
Q psy10491 73 STVERGLLLSSFFY-GYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQ----------------------S- 128 (520)
Q Consensus 73 s~~~~g~~~s~~~~-~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~----------------------~- 128 (520)
.+..+.++=+..-+ +..+..++.+++.+++.+.+++-+-+..+....+++++.-. +
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 56667888777777 67788999999999999999988888777777777776521 0
Q ss_pred --------HHHHHHHHHHHhccccCchh-hHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccc-----
Q psy10491 129 --------IWCLAAVRFIQGMGEGPIVP-CTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFL----- 194 (520)
Q Consensus 129 --------~~~l~~~r~l~G~g~~~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~----- 194 (520)
.|...+.-++.-+=.+.... .-.....|.+..+|-.|..+.++.+.+++..++..+..++.++.+.
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~ 218 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEF 218 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHH
Confidence 01111111111111111122 3345678888889999999999999999999999999888764100
Q ss_pred --cCcchHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHH
Q psy10491 195 --QGWPAIFYVFGVICLIWCVLFIFLVYE-NPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILV 271 (520)
Q Consensus 195 --~gwr~~f~i~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (520)
..-+..+.+.+..++++. +..+++.+ ..++.... .+...+ +..+..+..-..+.+.+.++|.++.+.+
T Consensus 219 ~~~~~~~~~~vi~~~~~i~~-~l~~~~~r~il~~~~f~-~~~~~k-------k~~~k~k~~~~~s~k~i~~SkyL~~ial 289 (509)
T COG3202 219 KDLLLQILFIVIVILGIIAI-LLYRYINRNVLTDPLFY-LRAKKK-------KKKKKLKLGLIESFKMILRSKYLGAIAL 289 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcccCcchh-HHHhcc-------cccccccCcHHHHHHHHHhhhHHHHHHH
Confidence 012334444444444433 33333322 11111100 000000 0000011222345666778888888888
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHH---HHhHHHH-HHHHHHHHHHHHHHHHhhccc
Q psy10491 272 AHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLI---SATPYIA-MFITSSVLNYLADYFIRKKIL 333 (520)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~---~~~~~~~-~~~~~~~~g~l~dr~g~~~~~ 333 (520)
...+++.+.+.+....-.-.++.+-.+.+..++. ....++. .++...+++.+.+|.|-....
T Consensus 290 ~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~A 355 (509)
T COG3202 290 LVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGA 355 (509)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHH
Confidence 8888888877777655555555444333333333 3333444 334455667777777765543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.4e-06 Score=58.38 Aligned_cols=68 Identities=12% Similarity=0.012 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHH
Q psy10491 40 GMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVN 115 (520)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~ 115 (520)
.+++.+.....+.+.+|... ++.|+|+.++|.+.++..+...++.+++|.++||+++++.++....++
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~--------~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYL--------KQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhh--------hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 34444444445555555555 789999999999999999999999999999999999999887766543
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00021 Score=70.78 Aligned_cols=149 Identities=16% Similarity=0.256 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhh-hhhcccCcchhHHHHH
Q psy10491 34 TFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIG-LLTKNHDSHKMLAYGM 112 (520)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g-~l~Dr~Grr~~l~~~~ 112 (520)
+.++....+....+.....-.++.... ..+++++.+.+...+...+...+++++.. .+...+|-|+++.+|+
T Consensus 243 l~l~l~~~~~~~~~~~~~~~~~~~yl~-------~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl 315 (463)
T KOG2816|consen 243 LLLLLVAFLSSLPEAGGASDVLLLYLK-------AKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGL 315 (463)
T ss_pred hHHHHHHHHHHHHHhcCceeEEEEEEe-------eecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHH
Confidence 334444444444554433422333332 78999999999999988888888888877 7778899999999999
Q ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcc
Q psy10491 113 VVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYG 191 (520)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~ 191 (520)
+.-.+..++.+++ ++.|++....++.++. ....|...+.++.+.+++++|+++++.+..-.+..+++|.+-+.+...
T Consensus 316 ~~~~~~~~~~af~-~~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 316 LSEFLQLLLFAFA-TETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HHHHHHHHHHHHh-ccchhhhHHHHHHHhh-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999999999 5566777777777776 567899999999999999999999999999999999999998877653
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.3e-05 Score=56.37 Aligned_cols=65 Identities=23% Similarity=0.365 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy10491 268 SILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKIL 333 (520)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 333 (520)
.+-...++.+.+...+..++|.|+++ .|+|+.++|.+.++..+..+++.++.|+++||.++++..
T Consensus 4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~ 68 (77)
T PF12832_consen 4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVI 68 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence 34556677778888899999999998 599999999999999999999999999999999999875
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.1e-05 Score=75.79 Aligned_cols=185 Identities=15% Similarity=0.038 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHh-hcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHh-hccccccchhhhhh
Q psy10491 266 FLSILVAHMGQNFGYETLMTMLPTFLKE-VLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIR-KKILSTGATRKLMT 343 (520)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-~~~~~~~~~~~~~~ 343 (520)
+++..+..++....+..+..-.-.|+++ ..+-+....|++.+...++..+++++.|+...|.+. |+++
T Consensus 36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl---------- 105 (488)
T KOG2325|consen 36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL---------- 105 (488)
T ss_pred HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH----------
Confidence 3444444454444444333334445555 136667778999999999999999999999999885 5554
Q ss_pred hhhchhhhhhhhhh---hccCCC-hHHHHHHHHHHHHHhhccccccceeecc-CCCCcchhHHHHHHHHHhhHHhHHHHH
Q psy10491 344 SIGEYGPGLMFIIP---VILGFT-HTPTIVCLILAMACNGGIYAGFKVNHID-ISPCFAGILMSITNCSANVVGMLAPTI 418 (520)
Q Consensus 344 ~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~~~g~~~~~~~~g~~i~~~~ 418 (520)
..+.++..++.+++ ...+++ .++++++=++.++. .......-.+..+ ..+++|.++++..+....+|.++||.+
T Consensus 106 i~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg-~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~ 184 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVG-VGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI 184 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcC-cccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH
Confidence 46666666665554 333432 23333322222222 1222333334443 355668888888777777777777766
Q ss_pred HHHhhccc-------cccccchhHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q psy10491 419 SGLLLNWF-------QHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQ 461 (520)
Q Consensus 419 ~g~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (520)
...+.... ....-..|..+-|+++++.++..++.++.-++..+
T Consensus 185 q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 185 QLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 54433311 11122346677778877777777766665554443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00067 Score=63.52 Aligned_cols=150 Identities=16% Similarity=0.109 Sum_probs=89.3
Q ss_pred hcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHH
Q psy10491 294 VLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLIL 373 (520)
Q Consensus 294 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (520)
.+|++..+++.++........+...+.|.+.||+|||+.- ++..++..++++.-. .+ +....+..=++
T Consensus 63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~c----------l~~cily~~scl~k~-~~-~~~~L~~GRvl 130 (354)
T PF05631_consen 63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKAC----------LLFCILYSLSCLTKH-SS-NYPVLLLGRVL 130 (354)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHH----------HHHHHHHHHHHHHHh-cc-ccHHHHHHHHH
Confidence 4799999999999999999999999999999999999864 344444444443222 22 33333343344
Q ss_pred HHHHhhccccccceee-c----cCCCCc-chhHHHHHHHH-HhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHH
Q psy10491 374 AMACNGGIYAGFKVNH-I----DISPCF-AGILMSITNCS-ANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYI 446 (520)
Q Consensus 374 ~~~~~~~~~~~~~~~~-~----~~~p~~-~g~~~g~~~~~-~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 446 (520)
++......+...-++. . .-.|++ .+...+..... ..+.++++..+...+.++. ..+...+|.....+.+
T Consensus 131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~----~~g~vaPF~~a~~~l~ 206 (354)
T PF05631_consen 131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF----GFGPVAPFDAAIVLLA 206 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh----CCCCcchHHHHHHHHH
Confidence 4443344443332222 1 123333 55555554422 3344455555555555521 2345778888888888
Q ss_pred HHHHHHHHhcCCC
Q psy10491 447 TCATVYLLFSSGR 459 (520)
Q Consensus 447 ~~~~~~~~~~~~~ 459 (520)
++.++.....+++
T Consensus 207 ~~~~~I~~~W~EN 219 (354)
T PF05631_consen 207 VAAVLILKTWPEN 219 (354)
T ss_pred HHHHHHHhccccc
Confidence 8777665544443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00016 Score=71.98 Aligned_cols=158 Identities=22% Similarity=0.205 Sum_probs=102.3
Q ss_pred HHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHH----hhccccccchhhhhhhhhchhhhhhhhhhhcc
Q psy10491 285 TMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFI----RKKILSTGATRKLMTSIGEYGPGLMFIIPVIL 360 (520)
Q Consensus 285 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (520)
.-...++++.+|.++.+...+.....+.-.+ .++.|.++|-+. ||+.. +.++.++..++...+...
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y---------~~i~~~~~~~~~~~~~~~ 79 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPY---------MIIGWLLGAVSALVLALL 79 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHH---------HHHHHHHHHHHHHHHHhc
Confidence 3445567777899999888777666655544 778999999874 33332 356666665555544444
Q ss_pred CC---ChHHHHHHHHHHHHHhhccccccceeeccCC---CCcchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchh
Q psy10491 361 GF---THTPTIVCLILAMACNGGIYAGFKVNHIDIS---PCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSW 434 (520)
Q Consensus 361 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~ 434 (520)
+. +.....+++++..++....-...-....|.. |+.+|...+....+..+|+.++..+.|.+.+ ..++
T Consensus 80 ~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~------~~~~ 153 (433)
T PF03092_consen 80 PASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLD------SFGP 153 (433)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh------cCCC
Confidence 43 2233333333333333333333333444433 4447888999999999999999999999998 5677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q psy10491 435 KVVFLVSAVLYITCATVYLLFSSG 458 (520)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~ 458 (520)
+..|.+.+.+..+..+..+++.++
T Consensus 154 ~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 154 QGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred eEEehHHHHHHHHHHHHHHHhhhh
Confidence 778888877777776666666554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00013 Score=71.30 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHHHHHHhHh--hh-----HH-HHHHHHHHHhccccCchhhHHHHHhhhcCCC---cchhHHHHHHHHh
Q psy10491 106 KMLAYGMVVNAVFALLVPVSS--QS-----IW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPG---ERSFLGGIVYSGA 174 (520)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~--~~-----~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~---~rg~~~~~~~~~~ 174 (520)
|+++++.+++.+|.++..++. .. .. .++++-++.++|.|+.-|....+++|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 678889999999998865552 11 23 6888899999999999999999999999765 4677888999999
Q ss_pred HHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHH
Q psy10491 175 QFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWC 212 (520)
Q Consensus 175 ~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~ 212 (520)
++|..++..+.+++.++ .||.+.|.+.++..++..
T Consensus 82 n~G~~~~~~~~~~i~~~---~~~~~~f~i~~~~~~~~~ 116 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQN---YGWFLGFGIPAIGMLLAL 116 (372)
T ss_dssp HHHHHHHHHCCCHHHHC---S-HHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccc---cchhhhhhHHHHHHHHHH
Confidence 99999999999999987 899999999888777633
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0017 Score=61.93 Aligned_cols=35 Identities=3% Similarity=0.070 Sum_probs=24.5
Q ss_pred HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhH
Q psy10491 131 CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFL 166 (520)
Q Consensus 131 ~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~ 166 (520)
..++.-.+.+++.|......+...++. |+|.-+..
T Consensus 119 vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytqav 153 (406)
T KOG1479|consen 119 VTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQAV 153 (406)
T ss_pred HHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHHHH
Confidence 777778888888888777777777654 56554433
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00028 Score=62.63 Aligned_cols=241 Identities=13% Similarity=0.066 Sum_probs=113.6
Q ss_pred CcchhHHHHHHHHhHHHHHHhhhhhhhh---hccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-hHHHHH
Q psy10491 161 GERSFLGGIVYSGAQFGTIISYPVSGYL---AYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVS-VEEKEY 236 (520)
Q Consensus 161 ~~rg~~~~~~~~~~~~G~~~g~~l~~~l---~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~ 236 (520)
|+|+....+...++++|.++....--.- .+. ....|++++.+.+++.++.+++..++ +++-+..... .+++.
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~-~~~~W~~I~si~~lL~~IpLIly~if--Gk~fd~~~~~~k~~k~- 77 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIA-LTNNWQWILSIFILLIFIPLILYIIF--GKNFDIYSPKEKQEKE- 77 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh--cccccccCcccccccc-
Confidence 5677777777888888887754432111 111 11469999999888887755554444 3322221111 11100
Q ss_pred HHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcc---------hh----H
Q psy10491 237 ILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMI---------KN----G 303 (520)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---------~~----~ 303 (520)
+.....+.+..+.+|++..|...+.+...-... +..+.+.+.......++. .. .
T Consensus 78 -----------~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~--V~p~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~ 144 (267)
T PF07672_consen 78 -----------NSTLSKKPSYKSILKEKETWKWILIYGIWLVVV--VFPFTPSWFNILIWISPANIKSVVSGGGFNWIIP 144 (267)
T ss_pred -----------cccccccchHHHHHccchHHHHHHHHHHHheeE--EEeccchhHhHhhhcCcccccccccccccchhhH
Confidence 022334467889999999887766655432211 111112222211111111 11 1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhc-cCCCh---HHHHHHHHHHHHHhh
Q psy10491 304 LISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVI-LGFTH---TPTIVCLILAMACNG 379 (520)
Q Consensus 304 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~ 379 (520)
....+...+..+|.+..|...+..-+|+.... .+...+++...++.++... ..++. ....+..++.+.+.-
T Consensus 145 ~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~-----~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~W 219 (267)
T PF07672_consen 145 IFQILFVAGYFLGPFTIGLWNKTNYKRKPFIH-----FIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLW 219 (267)
T ss_pred HHHHHHHHHHhhhceeeccchhhhhhhhhHHH-----HHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH
Confidence 22222333333454555665554333333311 1112333333333333222 22222 122222222222222
Q ss_pred ccccccceeec---cCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhh
Q psy10491 380 GIYAGFKVNHI---DISPCFAGILMSITNCSANVVGMLAPTISGLLL 423 (520)
Q Consensus 380 ~~~~~~~~~~~---~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 423 (520)
+..+....... +..|++.|...|+...++++.-.+.-.+.+.+.
T Consensus 220 giQ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S~i~ 266 (267)
T PF07672_consen 220 GIQGVILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILSVIA 266 (267)
T ss_pred hhhHHHhcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23333322222 345677888888888888887777666665544
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0017 Score=62.62 Aligned_cols=165 Identities=11% Similarity=0.058 Sum_probs=104.6
Q ss_pred HHHHHHhHHHHHhh-cCCCcchhHH-HHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhh
Q psy10491 281 ETLMTMLPTFLKEV-LHFDMIKNGL-ISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPV 358 (520)
Q Consensus 281 ~~~~~~~~~~~~~~-~g~s~~~~~~-~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (520)
-....++..|+.+. .|++..+..- ++-+..-..++..+....+.|.++.|..+ +++.+...+...++.
T Consensus 20 rPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpvi----------il~~~~~i~t~~lll 89 (412)
T PF01770_consen 20 RPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVI----------ILQALSYIITWLLLL 89 (412)
T ss_pred CCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHH----------HHHHHHHHHHHHHHH
Confidence 34456788888886 7888877653 33333445556667778899999999876 455454445555555
Q ss_pred ccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHH
Q psy10491 359 ILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVF 438 (520)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~ 438 (520)
+..+-...-+.-++.|... +.-..-..-+-..+.|++--++.+...+..-+|..++..++-.+.+ ....+|....
T Consensus 90 ~~~sv~~mq~~q~~yg~~~-a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs----~~~~sy~~L~ 164 (412)
T PF01770_consen 90 FGTSVLAMQLMQFFYGLAT-AAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS----FGGVSYFQLN 164 (412)
T ss_pred HHCcHHHHHHHHHHHHHHH-HHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCHHHHH
Confidence 5543333333333333332 2222222222234556666777888888888888888877776666 2356788888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCc
Q psy10491 439 LVSAVLYITCATVYLLFSSGRK 460 (520)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~ 460 (520)
++..+...++.++.+++++.++
T Consensus 165 ~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 165 YISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHHHHHHcCCCCc
Confidence 8888888888888888877554
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0048 Score=62.64 Aligned_cols=143 Identities=13% Similarity=0.126 Sum_probs=86.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHH--HH-HHH-HH---HHhHhhhHH-HHHHHHHHHh
Q psy10491 69 SKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVV--NA-VFA-LL---VPVSSQSIW-CLAAVRFIQG 140 (520)
Q Consensus 69 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~--~~-~~~-~~---~~~~~~~~~-~l~~~r~l~G 140 (520)
-+|-+....+.+.+++..|.++|+.+.+++.++.-++.. .+-+.+ .+ ++. ++ .++.. ... .++..-++.+
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~~ 121 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQG-LSRLLLYVLVLLIG 121 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 446678888999999999999999999988743322222 111111 11 111 11 11110 112 3344556677
Q ss_pred ccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHH
Q psy10491 141 MGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFI 216 (520)
Q Consensus 141 ~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~ 216 (520)
+..|+..|....+..+.. .++-|...|-......+|.++|.++.+++.-.. .|-....++.+.+.++.+++.+
T Consensus 122 ~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~--lG~~~t~~~~a~l~~~~a~~~~ 194 (521)
T PRK03612 122 LLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPR--LGLIRTAALTGSLNLLAALVFL 194 (521)
T ss_pred HHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHH
Confidence 877888887777766543 334577888999999999999999988766521 4544444444555555444333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.47 E-value=1.7e-05 Score=80.42 Aligned_cols=182 Identities=15% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchh
Q psy10491 270 LVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYG 349 (520)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 349 (520)
++..+.+ ....++....-.-++++++++..++|++.+.+-++..+..++..+..+|.+|.+++ .++.++
T Consensus 9 ~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwi----------g~g~~~ 77 (539)
T PF03137_consen 9 CLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWI----------GIGALL 77 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccee----------eecHHH
Confidence 3334444 44555555445566777999999999999999999999999999999998777776 566666
Q ss_pred hhhhhhhhhccCC---------------------------------------------ChHHHHHHHHHHHHHh----hc
Q psy10491 350 PGLMFIIPVILGF---------------------------------------------THTPTIVCLILAMACN----GG 380 (520)
Q Consensus 350 ~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~----~~ 380 (520)
++++.++....+- ........++++-... ..
T Consensus 78 ~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~p 157 (539)
T PF03137_consen 78 MGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATP 157 (539)
T ss_dssp --------------------------------------------------------------------------SSS---
T ss_pred HHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccC
Confidence 6665554432100 0011222233332222 33
Q ss_pred cccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccc----------------cchhHHHHHHHHH
Q psy10491 381 IYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDE----------------MLSWKVVFLVSAV 443 (520)
Q Consensus 381 ~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~----------------~~~~~~~~~~~~~ 443 (520)
.++.-.+++.|..+++ .+...|+..+...+|-++|-.++|...+.+.+.. ...|-..|++.+.
T Consensus 158 l~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~ 237 (539)
T PF03137_consen 158 LYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGI 237 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 4444556666655544 8888888888888888888777777766441100 1235666777777
Q ss_pred HHHHHHHHHHHhcCCCccc
Q psy10491 444 LYITCATVYLLFSSGRKQY 462 (520)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~ 462 (520)
+.++..+..+.++|+..+.
T Consensus 238 ~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 238 LLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHcCCccCCCc
Confidence 7777777777777765444
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0079 Score=59.06 Aligned_cols=181 Identities=13% Similarity=0.138 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhh
Q psy10491 265 PFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTS 344 (520)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 344 (520)
..+.+.+..++..++--...+-.+.++.+.+.-+-.-.+.......+..++..+..|...||..|.+..+.... ..-
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~---~Qn 79 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLV---VQN 79 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHH---HHH
Confidence 45678888899999999999999999999876666666777777788888889999999999998887643221 111
Q ss_pred hhchhhhhhhhhhhccCCC----hHHHHHHHHH--HHHHhhcccccc--ceeecc----CC---CCcchhHHHHHHHHHh
Q psy10491 345 IGEYGPGLMFIIPVILGFT----HTPTIVCLIL--AMACNGGIYAGF--KVNHID----IS---PCFAGILMSITNCSAN 409 (520)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~----~~---p~~~g~~~g~~~~~~~ 409 (520)
.+..+..+.+..+...... .+....++.. ..++..-..... ...-.| +. ++......+...-+=.
T Consensus 80 ~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL 159 (432)
T PF06963_consen 80 LSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDL 159 (432)
T ss_pred HHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHH
Confidence 2222222222222222211 1222211111 111111111111 111111 22 2225555555555556
Q ss_pred hHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHH
Q psy10491 410 VVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLL 454 (520)
Q Consensus 410 ~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (520)
+.-.++|.+.|.+.+ ..++..+..+.++..+++.+.=++
T Consensus 160 ~ckllaPl~vG~l~t------~~s~~~~~~~i~~~N~~S~~vEy~ 198 (432)
T PF06963_consen 160 FCKLLAPLFVGLLMT------FASPVIAAIFIAGWNLASVFVEYF 198 (432)
T ss_pred HHHHHHHHHHHHHhh------ccCHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999998 567888888887777777765443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0039 Score=59.95 Aligned_cols=126 Identities=9% Similarity=-0.036 Sum_probs=79.6
Q ss_pred HHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCC---h
Q psy10491 288 PTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFT---H 364 (520)
Q Consensus 288 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 364 (520)
..+.++.|| +...+-+...++.+..+...+.+-|+.||+|-|... .++..+..++..+=...... .
T Consensus 68 ~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~----------llgt~ln~iGa~Ir~iss~p~v~~ 136 (480)
T KOG2563|consen 68 NNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTAL----------LLGTVLNGIGAWIRLISSLPFVPP 136 (480)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHH----------HHHHHHHHHHHHHhhhccCccccc
Confidence 345566677 666677888888999999999999999999999887 45555555554433222221 1
Q ss_pred HHHHHHHHHHHHHhhcccccccee----ec-cCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 365 TPTIVCLILAMACNGGIYAGFKVN----HI-DISPCFAGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
...-.....|....+...+-...+ .. -..|++|+++..+..+...+|.+++..+-..+..
T Consensus 137 ~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 137 LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence 111112222222222222222222 12 2356679999999888889999999988888877
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.018 Score=57.18 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHH-Hh----Hhh-hHH-HHHHHHHHHhccccCchhhHHH
Q psy10491 80 LLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLV-PV----SSQ-SIW-CLAAVRFIQGMGEGPIVPCTHA 152 (520)
Q Consensus 80 ~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~-~~----~~~-~~~-~l~~~r~l~G~g~~~~~~~~~~ 152 (520)
..-...+...+..+..-.+..|+..|.=+..++++..+..++. .+ .+. ..+ ..++.-++.|++.+.......+
T Consensus 50 ~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~g 129 (437)
T TIGR00939 50 YTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFG 129 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchh
Confidence 3334444455555555566666665433344433322222221 11 111 145 7777778899999888888888
Q ss_pred HHhhhcCCCcchhHHHHHHHHhHHHHHHhhhh
Q psy10491 153 ILAKWIPPGERSFLGGIVYSGAQFGTIISYPV 184 (520)
Q Consensus 153 ~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l 184 (520)
+.+ .+|++ .+..+..+.+++++++.++
T Consensus 130 la~-~fp~~----~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 130 LAG-VFPST----YSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred hcc-cCCHH----HHHHHHhcchhHHHHHHHH
Confidence 777 55543 3455555666666555544
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0049 Score=63.49 Aligned_cols=179 Identities=13% Similarity=0.112 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhh
Q psy10491 273 HMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGL 352 (520)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 352 (520)
.+...+.. ++....-.-++++++++..+.|++.+.+-++..+...+..+...|.+|.+++ .++.+++++
T Consensus 106 ~~~q~l~~-~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~I----------g~G~~~m~l 174 (735)
T KOG3626|consen 106 AFAQGLYV-GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWI----------GIGLVLMGL 174 (735)
T ss_pred HHHHHhhh-hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCcccee----------eechhHHHH
Confidence 33333333 5555555567788999999999999999999999999999999999988887 455555555
Q ss_pred hhhhhhcc--------------------C---------------------------CChHHHHHHHHH----HHHHhhcc
Q psy10491 353 MFIIPVIL--------------------G---------------------------FTHTPTIVCLIL----AMACNGGI 381 (520)
Q Consensus 353 ~~~~~~~~--------------------~---------------------------~~~~~~~~~~~~----~~~~~~~~ 381 (520)
+.++..+. + ........++++ .+.+....
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 54443221 0 000112222222 22223344
Q ss_pred ccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhcccccc--c-----------cchhHHHHHHHHHHHHH
Q psy10491 382 YAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHD--E-----------MLSWKVVFLVSAVLYIT 447 (520)
Q Consensus 382 ~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~--~-----------~~~~~~~~~~~~~~~~~ 447 (520)
++.-..++.|...++ .....|+..++..+|=++|-.+++.+...+.+. . ...|...|++++.+.++
T Consensus 255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~ 334 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF 334 (735)
T ss_pred ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 455566777766555 888899999998888888888888887755222 1 13577788888999999
Q ss_pred HHHHHHHhcCCCccc
Q psy10491 448 CATVYLLFSSGRKQY 462 (520)
Q Consensus 448 ~~~~~~~~~~~~~~~ 462 (520)
..+.+++++++..+.
T Consensus 335 ~a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 335 SAVPLFFFPKELPKS 349 (735)
T ss_pred HHHHHHhCcccCccc
Confidence 999999988876554
|
|
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00054 Score=61.88 Aligned_cols=142 Identities=12% Similarity=0.046 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHh
Q psy10491 77 RGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILA 155 (520)
Q Consensus 77 ~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~ 155 (520)
.|.+.-+-.+...+..+.+..+.||+---.-+.+..++.+.+.++.+++. +. +-+++-.+..++.|..-..-.++-
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~--s~~~sL~GV~~aSissGlGEiTFL~ls- 140 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSN--SVPMSLLGVVFASISSGLGEITFLALS- 140 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEecc--chhHHHhhhhhhhhcCCcceeehhhhh-
Confidence 34444455555666667777788886544444556677778888888885 55 888888888888876655444333
Q ss_pred hhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy10491 156 KWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSD 226 (520)
Q Consensus 156 ~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~ 226 (520)
..++ ....+.++.+.+.++++|..-...+.+.. ...-|...++...+..+.+...++.+++++...
T Consensus 141 s~Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~-~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~ 206 (409)
T KOG3880|consen 141 SRYP----SIVIAGWSSGTGGAGLIGASSYAFLTSWA-NLSPKSTLLIMLFLPALFAFAYFFLLKSPESVY 206 (409)
T ss_pred ccCC----CceeccccCCCCcchhhhhhHHHHHhhhc-CCChhhHHHHHHHHHHHHHHHHHheeCCCcccc
Confidence 3332 33455566666666777776666666521 157788888888888887777777776655443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.017 Score=58.80 Aligned_cols=149 Identities=12% Similarity=-0.022 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhch
Q psy10491 269 ILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEY 348 (520)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 348 (520)
+.+..++..++...+.......+...+|.+....+.+.+++.++..+|+.+++++.++..++..... ..++.+
T Consensus 19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e-------~~i~l~ 91 (521)
T PRK03612 19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVE-------LLLALL 91 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------HHHHHH
Confidence 3444445556666666666777777788888888888888888888888888877644333322110 011111
Q ss_pred hhhh---hhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 349 GPGL---MFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 349 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
.... ......+............+.-.++.+...|...-.......++.|...|-......+|+++|+.+.+.+.-
T Consensus 92 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 92 GGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 1000 001111100000111122222233444445554444443333346677888888899999999999887764
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.03 Score=54.09 Aligned_cols=140 Identities=16% Similarity=0.227 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHH-
Q psy10491 37 LFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVN- 115 (520)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~- 115 (520)
+++.++..+.....+...+..- .++.-..++..+...+|.+|-.++.--...+ |+ |++.+.+.+-.
T Consensus 252 L~lVY~aEY~InqGv~~tl~fp---------~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~ 318 (402)
T PF02487_consen 252 LFLVYFAEYFINQGVAPTLLFP---------NSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVI 318 (402)
T ss_pred HHHHHHHHHHHHhchHHHhcCC---------ccCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHH
Confidence 4556666665555444433221 2233345678888888888877765433222 33 44333333222
Q ss_pred -HHH---HHHHHhHhhhHHHHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhc
Q psy10491 116 -AVF---ALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAY 190 (520)
Q Consensus 116 -~~~---~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~ 190 (520)
.+. ....-+. ++.|..++.-+..|+..|..++-+...+.|-.++++|-.++|....+-++|.+++.+++-.+-.
T Consensus 319 nl~~~~l~s~~~fi-psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 319 NLVFLLLQSWYRFI-PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 222 1222233 2244777889999999999999999999999999999999999999999999999988866543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3097|consensus | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.079 Score=48.89 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=52.0
Q ss_pred HHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhc
Q psy10491 86 YGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWI 158 (520)
Q Consensus 86 ~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~ 158 (520)
+.-..+.++.+.+..++|-|+++.++...+...-..- +-+ .| .++-.-.+.|++.+..+..--+|+++.-
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~p--r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEP--RYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cch--hHHhhccHHHhhccccccccccCcceecHHH
Confidence 3445555666689999999999999888876543222 222 56 9999999999999999887777766554
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0059 Score=44.39 Aligned_cols=75 Identities=12% Similarity=0.175 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhh
Q psy10491 277 NFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFII 356 (520)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (520)
..+-+.+...+|...++. ++|..+.+++.+...++..+|.+...++.++.++++.+ ..+.+...+....
T Consensus 5 GigRFayTplLP~M~~~~-~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~ 73 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADG-GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLL----------RAGLLLTVLSTAA 73 (85)
T ss_pred hhHHHHHHhHhHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH----------HHHHHHHHHHHHH
Confidence 345567778899888885 99999999999999999999999999998886666665 4666666666666
Q ss_pred hhccCC
Q psy10491 357 PVILGF 362 (520)
Q Consensus 357 ~~~~~~ 362 (520)
..+..+
T Consensus 74 ma~~~~ 79 (85)
T PF06779_consen 74 MALTHS 79 (85)
T ss_pred HHHHhc
Confidence 665544
|
Note that many members are hypothetical proteins. |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.002 Score=61.87 Aligned_cols=147 Identities=13% Similarity=0.153 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHH----HHhhccccccchh
Q psy10491 264 GPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADY----FIRKKILSTGATR 339 (520)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~~~~~~~~~~~ 339 (520)
++.+......+...+++..-..+.|.|+++. |.+....+.+....-+.+++.+++.|..+|| +||||..+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~l-Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI----- 105 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSL-GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFI----- 105 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHc-CCCcccccccccccccccceecccccccccccccccccccchH-----
Confidence 4556666677777888888889999999995 9999888888888888999999999999995 67887763
Q ss_pred hhhhhhhchhhhhhhhhhhccCC--------Ch----HHHHHHHHHHH----HHhhccccccceeeccCCC-Ccchh-HH
Q psy10491 340 KLMTSIGEYGPGLMFIIPVILGF--------TH----TPTIVCLILAM----ACNGGIYAGFKVNHIDISP-CFAGI-LM 401 (520)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~--------~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p-~~~g~-~~ 401 (520)
..+.....++++++.+..+ .. ...+...++++ +.........-++..++.. +++.+ +.
T Consensus 106 ----~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~An 181 (498)
T KOG0637|consen 106 ----LAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRAN 181 (498)
T ss_pred ----HHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccc
Confidence 4555555555555544322 11 23344444443 2233334444455555543 33444 88
Q ss_pred HHHHHHHhhHHhHHHHHHH
Q psy10491 402 SITNCSANVVGMLAPTISG 420 (520)
Q Consensus 402 g~~~~~~~~g~~i~~~~~g 420 (520)
+....+..+|+.+|=.+.+
T Consensus 182 s~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 182 SVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hhHHHHHHhcceeeeeccc
Confidence 8888888888877755554
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.065 Score=44.54 Aligned_cols=109 Identities=9% Similarity=-0.060 Sum_probs=70.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhcccc
Q psy10491 304 LISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYA 383 (520)
Q Consensus 304 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (520)
.-.++......+.+++.+.+.+++|.|+.+ +++.+...+-.... +.+ +.+..+....+.++..+..+.
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm----------~lg~~~y~~y~~~~-~~~-~~~~l~~~s~l~G~~~a~lW~ 108 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSM----------ILGSLGYAIYIASF-FYP-NSYTLYPASALLGFGAALLWT 108 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHH----------HHHHHHHHHHHHHH-Hhh-hHHHHHHHHHHHhhhhHHhhH
Confidence 345566667778888899999999999887 45544444333322 222 334444444444444456666
Q ss_pred ccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 384 GFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 384 ~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
....+..+...++ +++-.|+...+.+.+..+|..+.-.+..
T Consensus 109 aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 109 AQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred hhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6656666655554 9999999999988888888877655544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.053 Score=50.83 Aligned_cols=153 Identities=21% Similarity=0.275 Sum_probs=93.1
Q ss_pred HHHHHHHHhHHHHHhhcCCCc--chhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhh
Q psy10491 279 GYETLMTMLPTFLKEVLHFDM--IKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFII 356 (520)
Q Consensus 279 ~~~~~~~~~~~~~~~~~g~s~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (520)
.........+.+..+. +.+. ...++......+...++.++.|.+.||.|||+.+ ..+......+...
T Consensus 17 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~----------~~~~~~~~~~~~~ 85 (338)
T COG0477 17 DLGLLSPALPLLLSTL-SLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVL----------IIGLLLFLLGTLL 85 (338)
T ss_pred hcchHHHHHHHHHHHc-CCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHH----------HHHHHHHHHHHHH
Confidence 3334444556665553 4444 4678888888899999889999999999888554 2332222222223
Q ss_pred hhccCC-ChHHHHHHHHHHHHHhhccccccceeeccCCCC--cchhHHHHHHH-HHhhHHhHHHHHHHHhhccccccccc
Q psy10491 357 PVILGF-THTPTIVCLILAMACNGGIYAGFKVNHIDISPC--FAGILMSITNC-SANVVGMLAPTISGLLLNWFQHDEML 432 (520)
Q Consensus 357 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~g~~~g~~~~-~~~~g~~i~~~~~g~l~~~~~~~~~~ 432 (520)
..+... ............+...+...+....+..+..|+ +++...+.... ...++..++|.+.+.+... ...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 161 (338)
T COG0477 86 LALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA----LLW 161 (338)
T ss_pred HHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhc
Confidence 333332 223333333323333345666667777777775 68888888888 5778888888777777761 234
Q ss_pred hhHHHHHHHHHHHH
Q psy10491 433 SWKVVFLVSAVLYI 446 (520)
Q Consensus 433 ~~~~~~~~~~~~~~ 446 (520)
+|+..+........
T Consensus 162 ~~~~~~~~~~~~~~ 175 (338)
T COG0477 162 GWRAAFLLAALLGL 175 (338)
T ss_pred chHHHHHHHHHHHH
Confidence 66665555444443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.15 Score=50.79 Aligned_cols=151 Identities=12% Similarity=0.085 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCC-----CcchhHHHHHhHHHHHHHH-HHHHHHHHHHHHhhccccccc
Q psy10491 264 GPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHF-----DMIKNGLISATPYIAMFIT-SSVLNYLADYFIRKKILSTGA 337 (520)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----s~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~~~ 337 (520)
|+++...+..++..+.++ .---++|..+. +.+...++.+...+...+. .++.+++++|++|++.+....
T Consensus 7 ~k~~~~~l~fF~il~~Y~-----iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~ 81 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYT-----ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVI 81 (472)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHH
Confidence 345555555555444332 22334555544 2345566666555555444 788999999999998863210
Q ss_pred hhhhhhhhhchhhhhhhhhhhccCC-------------------------ChHHHHHHHHHHHHHhhcccc-ccceeecc
Q psy10491 338 TRKLMTSIGEYGPGLMFIIPVILGF-------------------------THTPTIVCLILAMACNGGIYA-GFKVNHID 391 (520)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 391 (520)
..........+.+....... ..|......+..-..+....+ ..+...+|
T Consensus 82 -----~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fand 156 (472)
T TIGR00769 82 -----SPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQ 156 (472)
T ss_pred -----HHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01111111111111111000 011222222222233333333 66777888
Q ss_pred CCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhc
Q psy10491 392 ISPCF-AGILMSITNCSANVVGMLAPTISGLLLN 424 (520)
Q Consensus 392 ~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 424 (520)
+...+ ..+-.++.....++|..+++.+..++.+
T Consensus 157 i~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 157 ITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87655 8889999999999999999999888773
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.26 Score=48.76 Aligned_cols=103 Identities=17% Similarity=0.270 Sum_probs=78.9
Q ss_pred HHHHHHhhhhhhhhh---cccCcchhHHHHHHHHHHHHHHHHhHhhh----------------HH-HHHHHHHHHhcccc
Q psy10491 85 FYGYVLTQIPIGLLT---KNHDSHKMLAYGMVVNAVFALLVPVSSQS----------------IW-CLAAVRFIQGMGEG 144 (520)
Q Consensus 85 ~~~~~~~~~~~g~l~---Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~----------------~~-~l~~~r~l~G~g~~ 144 (520)
.++..++..+.+.+. +++||++.+.++..+..++.++.-...++ +. ..++.-++.|++-+
T Consensus 289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~ 368 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDA 368 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHH
Confidence 344444555566665 46899999999998888888877554221 25 77888899999999
Q ss_pred CchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhh
Q psy10491 145 PIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYL 188 (520)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l 188 (520)
......+.++++.. +++|..+.++.-.-..++..++.......
T Consensus 369 ~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 369 CFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999 88899999998888888887765554443
|
|
| >KOG4830|consensus | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.0009 Score=58.83 Aligned_cols=67 Identities=18% Similarity=0.259 Sum_probs=48.1
Q ss_pred ccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHH
Q psy10491 254 SIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVL 320 (520)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 320 (520)
+..|..-|++-.+..+.+.+.+.-...+.-..|++.|..+..+++....+++-.+..++....+.+.
T Consensus 191 Rm~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v~ 257 (412)
T KOG4830|consen 191 RMHWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMVN 257 (412)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhhc
Confidence 3455556677777788888888777777778889988888777777766777666666666555443
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=94.10 E-value=1.2 Score=42.97 Aligned_cols=176 Identities=10% Similarity=0.104 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHH----HHHHHHHHHHHHHHhhccccccchhh
Q psy10491 265 PFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMF----ITSSVLNYLADYFIRKKILSTGATRK 340 (520)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~----~~~~~~g~l~dr~g~~~~~~~~~~~~ 340 (520)
.++..++........+..+.+-.+.|.+...+.++ .-.....+.+.+. +....-.++.-|..+|-..
T Consensus 19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~------- 89 (406)
T KOG1479|consen 19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGY------- 89 (406)
T ss_pred HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 34555555666666777777666666665544444 3333344444443 3444444444442221111
Q ss_pred hhhhhhchhhhhhhhhhhc--cCCC-h---HHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHh
Q psy10491 341 LMTSIGEYGPGLMFIIPVI--LGFT-H---TPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGM 413 (520)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~--~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~ 413 (520)
...-..+..+..+.+.. .... . +.....+....+..+......+-.....+++. ++...|- +.++.+.+
T Consensus 90 --~l~~~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G~-a~aG~l~S- 165 (406)
T KOG1479|consen 90 --LLSLIAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSGQ-ALAGTLTS- 165 (406)
T ss_pred --HHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhcc-hhHhHHHH-
Confidence 01111111111111222 1111 1 23333344444455666677777777777777 4433332 33333322
Q ss_pred HHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 414 LAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 414 i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
+.-.+.-...+ +...+-..-|.+..++.++|.+++..+++
T Consensus 166 l~~i~tka~~~----~~~~sA~~yF~~s~~~~llC~i~y~~l~~ 205 (406)
T KOG1479|consen 166 LLRILTKAAFS----DSRTSALIYFITSTVILLLCFVLYLVLPK 205 (406)
T ss_pred HHHHHHHHhcC----CCCceeehhHHHHHHHHHHHHHHHHHhhc
Confidence 22223333333 22344455566777777777777775544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.21 Score=48.88 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhhccccccceeeccCCCCc----chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHH
Q psy10491 366 PTIVCLILAMACNGGIYAGFKVNHIDISPCF----AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVS 441 (520)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~ 441 (520)
..+.+.++ ..+.++.-+.......+.++++ +......+....++|..+++.+.+++.+ ..+|...|.+.
T Consensus 36 ~~~gL~li-a~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~------~~~~~~~f~i~ 108 (372)
T PF00854_consen 36 FYIGLALI-AVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQ------NYGWFLGFGIP 108 (372)
T ss_dssp HHHHHHHH-HHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHH------CS-HHHHHHHH
T ss_pred HHHHHHHH-HhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhcc------ccchhhhhhHH
Confidence 33334444 4444666666666666555432 7778888899999999999999999998 78999999999
Q ss_pred HHHHHHHHHHHHHhcCC
Q psy10491 442 AVLYITCATVYLLFSSG 458 (520)
Q Consensus 442 ~~~~~~~~~~~~~~~~~ 458 (520)
++..+++.+..+.-++.
T Consensus 109 ~~~~~~~~~~f~~~~~~ 125 (372)
T PF00854_consen 109 AIGMLLALIVFLSGRKR 125 (372)
T ss_dssp HHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHhCCcC
Confidence 99999888876655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=92.93 E-value=1.9 Score=44.44 Aligned_cols=172 Identities=20% Similarity=0.104 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHH-HHhhccccccchhhhhhhhhc
Q psy10491 269 ILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADY-FIRKKILSTGATRKLMTSIGE 347 (520)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~ 347 (520)
+...-.+-..+++++...+..|+...++.+...+.-.............+++++++|- +||.+.+. ++.
T Consensus 42 il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~----------~~s 111 (571)
T KOG1237|consen 42 ILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTIN----------IGS 111 (571)
T ss_pred HHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHH----------HHH
Confidence 4444455566777777888889988889888777777777777777888899999997 46665552 222
Q ss_pred hhhhhhhhhh-------hccC-------C-----C-h----HHHHHHHHHHHHHhhccccccceeeccCCC----Cc---
Q psy10491 348 YGPGLMFIIP-------VILG-------F-----T-H----TPTIVCLILAMACNGGIYAGFKVNHIDISP----CF--- 396 (520)
Q Consensus 348 ~~~~~~~~~~-------~~~~-------~-----~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~--- 396 (520)
++..+++.++ ...+ . . . ......+.....+.++.-+.......+-++ ++
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~ 191 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG 191 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence 2222221111 1111 0 0 1 111112222222334555666666665554 22
Q ss_pred chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 397 AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 397 ~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
...-+.......+.|..++..+.-++.+ +.+|...|.+..++..++.++.+...
T Consensus 192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~------~~~w~lgf~i~~~~~~lai~iF~~g~ 245 (571)
T KOG1237|consen 192 IPSFFNWFYFSQNGGALLAQTVLVYIQD------NVGWKLGFGIPTVLNALAILIFLPGF 245 (571)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhh------cccceeeccHHHHHHHHHHHHHHcCc
Confidence 3356777778888999999888888877 78999999999888888877766543
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.023 Score=53.82 Aligned_cols=113 Identities=12% Similarity=-0.012 Sum_probs=2.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH-Hhhccccccchhhhhhhhhchhhhhh-h--hhhhccCCChHHHHHHHHHHHHHhh
Q psy10491 304 LISATPYIAMFITSSVLNYLADYF-IRKKILSTGATRKLMTSIGEYGPGLM-F--IIPVILGFTHTPTIVCLILAMACNG 379 (520)
Q Consensus 304 ~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (520)
.++..++++..+|+.+.++..-+. .+|++......|..+.. .++++-.- - ..-.... +.++.++..++.++.++
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiP-lf~~cn~~p~~~~~~~~~~-~d~~~~i~~~l~g~TNG 263 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIP-LFLLCNVQPRPRYLPVLFN-SDAWFIILMLLFGFTNG 263 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHH-HHHHHHhhcccccCCCccc-chHHHHHHHHHHHHccc
Confidence 356678899999999887643221 23333322112211100 00000000 0 0001112 22334444444444455
Q ss_pred ccccccceeecc-CCCCcchhHHHHHHHHHhhHHhHHHHH
Q psy10491 380 GIYAGFKVNHID-ISPCFAGILMSITNCSANVVGMLAPTI 418 (520)
Q Consensus 380 ~~~~~~~~~~~~-~~p~~~g~~~g~~~~~~~~g~~i~~~~ 418 (520)
......+.+..+ +.|++|..+-.+...+-.+|-.+|..+
T Consensus 264 yl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 264 YLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp ---HHHH---------------------------------
T ss_pred hhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544 344556666666666666666666554
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=92.26 E-value=4.3 Score=40.45 Aligned_cols=111 Identities=13% Similarity=0.064 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhcccCcc--hhHHHHH--HHHHHHHHHHHhHh--------hhHHHHHHHHHHHhcccc
Q psy10491 77 RGLLLSSFFYGYVLTQIPIGLLTKNHDSH--KMLAYGM--VVNAVFALLVPVSS--------QSIWCLAAVRFIQGMGEG 144 (520)
Q Consensus 77 ~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr--~~l~~~~--~~~~~~~~~~~~~~--------~~~~~l~~~r~l~G~g~~ 144 (520)
.-....+|.++-.+|..+..+. ..-++| ++.+.+. +++....++|..-+ ++++..++.-++.|+..|
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence 3455667777777777755432 112333 3332222 22333333342220 235677778999999999
Q ss_pred CchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhh
Q psy10491 145 PIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYL 188 (520)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l 188 (520)
-....++.+..+..++++|..+-.+...+..+|..+|..++-.+
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998876544
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=90.57 E-value=1.4 Score=43.61 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHh-hcCCCcchhHHHH---HhHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy10491 267 LSILVAHMGQNFGYETLMTMLPTFLKE-VLHFDMIKNGLIS---ATPYIAMFITSSVLNYLADYFIRKKILS 334 (520)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 334 (520)
.++.+.++++.........-.|..+++ ..+.|-.+.|... -++.+=.+=+.++=....+|+||||..+
T Consensus 3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWi 74 (544)
T PF13000_consen 3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWI 74 (544)
T ss_pred eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhh
Confidence 345556666666555545678888888 1255555544432 2222222222223344566899999875
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.06 E-value=10 Score=35.82 Aligned_cols=177 Identities=15% Similarity=0.197 Sum_probs=95.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM 107 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~ 107 (520)
++++.....++++.++.............++. |-+.-|.+.+.+.|...+.+|+...-++.|.--.-+.
T Consensus 7 ~~~alL~laVf~~aa~GlvyElal~tLatyLl-----------G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~F 75 (508)
T COG4262 7 RWRALLLLAVFVCAACGLVYELALGTLATYLL-----------GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARF 75 (508)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-----------CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHH
Confidence 44555555555554444444444444333333 3355678999999999999999998888875433322
Q ss_pred HH----HHHHHH-HHHHHHHHhHh--h-hHHHHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHH
Q psy10491 108 LA----YGMVVN-AVFALLVPVSS--Q-SIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTI 179 (520)
Q Consensus 108 l~----~~~~~~-~~~~~~~~~~~--~-~~~~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~ 179 (520)
+. +|++.- .+..+-..|+. . ..+.+.++-++.|.-.|+..|..+.++..-. ++-....+.....-.+|.+
T Consensus 76 v~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~LVG~EiPL~mrml~~r~--a~~k~~~s~vl~~DYLGal 153 (508)
T COG4262 76 VDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVLVGAEIPLLMRMLQRRQ--AKAKDLGSRVLTLDYLGAL 153 (508)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HHHHhhhhhhhhhHhhhhh
Confidence 22 222211 11111113332 1 1237888899999999999999998887622 2222222333333667777
Q ss_pred HhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHh
Q psy10491 180 ISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLV 219 (520)
Q Consensus 180 ~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~ 219 (520)
.+.++-.++.-.. .|---.-...+.+.++.+++..+.+
T Consensus 154 ~~gLl~p~lllP~--LGl~rta~laG~~Nl~aAvv~~fll 191 (508)
T COG4262 154 AGGLLWPFLLLPR--LGLVRTAALAGLCNLAAAVVTLFLL 191 (508)
T ss_pred hHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766665554320 2322222234555555444333333
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=90.02 E-value=3 Score=39.92 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHH-----HHHhhcccc
Q psy10491 264 GPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLAD-----YFIRKKILS 334 (520)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~g~~~~~~ 334 (520)
+++..+...+..+........ .+|.+++.. |.|-+..+.....+. -.--.++...+.| |+|||+...
T Consensus 31 ~~illLl~LYllQGiP~GL~~-~iP~lL~ak-~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWv 102 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQAK-GVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWV 102 (510)
T ss_pred hhHHHHHHHHHHcCCchhHhh-hhHHHhcCC-Ccchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhcccccee
Confidence 456666666777666665554 889999864 888776655433221 1122455666777 999999875
|
|
| >KOG2601|consensus | Back alignment and domain information |
|---|
Probab=87.17 E-value=1.8 Score=41.14 Aligned_cols=122 Identities=9% Similarity=0.102 Sum_probs=66.5
Q ss_pred HHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHH------HhHhh----hHH-HHHHHHHHHhcccc--CchhhHHH
Q psy10491 86 YGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLV------PVSSQ----SIW-CLAAVRFIQGMGEG--PIVPCTHA 152 (520)
Q Consensus 86 ~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~------~~~~~----~~~-~l~~~r~l~G~g~~--~~~~~~~~ 152 (520)
....+..++.|...|+..|+|++...+++.-++.+++ .+..+ .+. ++..+-++.-.-.+ -....+.+
T Consensus 74 gs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~ 153 (503)
T KOG2601|consen 74 GSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGT 153 (503)
T ss_pred hHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 3456777888999999999999888776544433333 22221 122 33333222222111 11111111
Q ss_pred --HHhhhc----CCCcchhHH---HHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHH
Q psy10491 153 --ILAKWI----PPGERSFLG---GIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLI 210 (520)
Q Consensus 153 --~i~~~~----~~~~rg~~~---~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~ 210 (520)
+-.||. ..+.+.... +.....-..-..+.|.+.|.+.+. .+-|..-...++..++
T Consensus 154 i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitf---vsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 154 ILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITF---VSLRASAGTFAAWALV 217 (503)
T ss_pred EEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhccccee---echhhhhhhhHHHHHH
Confidence 123443 233344333 555555556678899999998887 6777766666666655
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=85.98 E-value=0.26 Score=44.27 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=35.7
Q ss_pred HHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy10491 290 FLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKIL 333 (520)
Q Consensus 290 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 333 (520)
|+.+.+|+...++|.++.......++...+.|-+.||.|||+.-
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKrac 105 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC 105 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccce
Confidence 44556789888999888777667777888899999999999863
|
|
| >KOG2601|consensus | Back alignment and domain information |
|---|
Probab=83.11 E-value=12 Score=35.76 Aligned_cols=71 Identities=7% Similarity=0.082 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy10491 264 GPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILS 334 (520)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 334 (520)
+..+.+...++...++--...+-...|+.+.+|-|-..++....+-+...++...+.|...|+..|.|.++
T Consensus 27 ~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~ 97 (503)
T KOG2601|consen 27 STVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQ 97 (503)
T ss_pred ceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHH
Confidence 34455666777777777777777777887776766666666666666667777778888899999988764
|
|
| >PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter | Back alignment and domain information |
|---|
Probab=81.05 E-value=17 Score=37.27 Aligned_cols=35 Identities=26% Similarity=0.188 Sum_probs=16.2
Q ss_pred CcchhHHHHHhHHHH----HHHHHHHHHHHHHHHHhhcc
Q psy10491 298 DMIKNGLISATPYIA----MFITSSVLNYLADYFIRKKI 332 (520)
Q Consensus 298 s~~~~~~~~~~~~~~----~~~~~~~~g~l~dr~g~~~~ 332 (520)
++..-|.+....-+. +.++...++++...++.++.
T Consensus 291 ~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W 329 (521)
T PF02990_consen 291 SPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFGGKKW 329 (521)
T ss_pred cccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCce
Confidence 444334444444444 44444444555555554443
|
Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 520 | ||||
| 1pw4_A | 451 | Crystal Structure Of The Glycerol-3-Phosphate Trans | 5e-05 |
| >pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter From E.Coli Length = 451 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 3e-56
Identities = 76/455 (16%), Positives = 157/455 (34%), Gaps = 28/455 (6%)
Query: 12 PATKPPKILKPKPKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKS 71
P + P R +F G A Y++R N ++A+ +
Sbjct: 8 PHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ---------G 58
Query: 72 WSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALL---VPVSSQS 128
+S + G LS Y ++ +G ++ + L G+++ A L VP ++ S
Sbjct: 59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 118
Query: 129 IWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYL 188
I + + F+ G +G P + W ER + + G I +
Sbjct: 119 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178
Query: 189 AYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIE 248
+ W A Y+ ++ + ++ + P S +EE + + +
Sbjct: 179 M--AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQ 236
Query: 249 DLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISAT 308
+L A I ++ + I +A++ ++ PT+LKEV HF + K+
Sbjct: 237 ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFL 296
Query: 309 PYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTI 368
A + + +++D R + + + T +
Sbjct: 297 YEYAGIPGTLLCGWMSDKVFRGNR-GATGVFFMTLVT-----IATIVYWMNPAGNPTVDM 350
Query: 369 VCLILAMACNGGIYAGFKVNHIDISPCFA-GILMSITNCSANVVGML-APTISGLLLNWF 426
+C+I+ G ++ ++++P A G T + G + A I G +++F
Sbjct: 351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 410
Query: 427 QHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQ 461
W F+V I + ++ G K+
Sbjct: 411 ------GWDGGFMVMIGGSILAVILLIVVMIGEKR 439
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 5e-06
Identities = 52/382 (13%), Positives = 102/382 (26%), Gaps = 61/382 (15%)
Query: 79 LLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFI 138
++ ++ Y ++Q+ G ++ ++ GM + + L+ V++ S+ L A +
Sbjct: 39 SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA-VTTSSLTVLIAASAM 97
Query: 139 QGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISY------------PVSG 186
QGMG G + +Y Q S P+ G
Sbjct: 98 QGMGTGVGGVMARTLPRD-------------LYERTQLRHANSLLNMGILVSPLLAPLIG 144
Query: 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDI 246
L + W A + V+C + E D + Y
Sbjct: 145 GLLDTMW--NWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSY---------- 192
Query: 247 IEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLIS 306
+ + F L+ +G G + VL + ++
Sbjct: 193 -----------KTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILF 241
Query: 307 ATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTP 366
P A F + F LM+I
Sbjct: 242 ILPIPAAFFGAWFAGRPNKRF--------STLMWQSVICCLLAGLLMWIPDWFGVMNVWT 293
Query: 367 TIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWF 426
+V L G ++ ++ P AG ++ N+ + L
Sbjct: 294 LLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVL----ASLSAML 349
Query: 427 QHDEMLSWKVVFLVSAVLYITC 448
S ++ + +L + C
Sbjct: 350 PQTGQGSLGLLMTLMGLLIVLC 371
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 18/141 (12%), Positives = 48/141 (34%), Gaps = 6/141 (4%)
Query: 95 IGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAIL 154
L+ L + +V + ++ S + ++ + ++ +
Sbjct: 279 APLIINRIGGKNALLLAGTIMSVRIIGSSFAT-SALEVVILKTLHMFEVPFLLVGCFKYI 337
Query: 155 AKWIPPGERSFLGGIVYS-GAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCV 213
+ + + + Q I ++G + Y + G+ + V G++ L + +
Sbjct: 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM-YESI--GFQGAYLVLGLVALGFTL 394
Query: 214 LFIFLVY-ENPHSDKRVSVEE 233
+ +F + P S R V E
Sbjct: 395 ISVFTLSGPGPLSLLRRQVNE 415
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 520 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.52 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.48 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.4 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.39 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.38 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.29 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.24 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-43 Score=350.91 Aligned_cols=400 Identities=17% Similarity=0.193 Sum_probs=319.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM 107 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~ 107 (520)
+.++..+..++++.+...++...+.+.+|.+. +++ .+..+.|++.+++.+++.++++++|+++||+|||++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~ 94 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV--------EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF 94 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT--------SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHH
Confidence 44577788888899999999999999999998 788 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh----HhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhh
Q psy10491 108 LAYGMVVNAVFALLVPV----SSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISY 182 (520)
Q Consensus 108 l~~~~~~~~~~~~~~~~----~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~ 182 (520)
++++.++.+++.+++++ ++ ++ .++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 172 (451)
T 1pw4_A 95 LPAGLILAAAVMLFMGFVPWATS--SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPP 172 (451)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHS--SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccc--cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 75 77 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccC-cchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhc
Q psy10491 183 PVSGYLAYGTFLQG-WPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIV 261 (520)
Q Consensus 183 ~l~~~l~~~~~~~g-wr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (520)
++++.+.+. .| ||+.|++.+++.++..++.++.+||+|++.+..+.++.+...++..+...+++....+...++++
T Consensus 173 ~~~~~l~~~---~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (451)
T 1pw4_A 173 LLFLLGMAW---FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVL 249 (451)
T ss_dssp HHHHHHHHH---TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTS
T ss_pred HHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHH
Confidence 999998876 77 99999999999888777788888987765432211110000000000000001111111246788
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHH--Hhhccccccchh
Q psy10491 262 KSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYF--IRKKILSTGATR 339 (520)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~~~~~~~~~~~ 339 (520)
++|.++...+..++..+....+..++|.|+++.+|+++.+++.+.+...++.+++.++.+++.||+ ++|+.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~------ 323 (451)
T 1pw4_A 250 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT------ 323 (451)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH------
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH------
Confidence 999999999999999999999999999999998899999999999999999999999999999999 888765
Q ss_pred hhhhhhhchhhh-hhhhhhhccCC-ChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhh-HHhHH
Q psy10491 340 KLMTSIGEYGPG-LMFIIPVILGF-THTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANV-VGMLA 415 (520)
Q Consensus 340 ~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~-g~~i~ 415 (520)
..+..+.. ++++.+.+.++ +.+......++.+++.+...+....+..+..|++ ||+++|+.+.+.++ |..++
T Consensus 324 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~ 399 (451)
T 1pw4_A 324 ----GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 399 (451)
T ss_dssp ----HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHH
Confidence 33333333 45555544433 3333333333333334445555566677777766 99999999999999 99999
Q ss_pred HHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 416 PTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 416 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
|.+.|.+.+ ..++...|++.+++.+++.++.+...+
T Consensus 400 ~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 400 SAIVGYTVD------FFGWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHH------SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------hcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 567999999999888888877766543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-40 Score=326.56 Aligned_cols=374 Identities=14% Similarity=0.119 Sum_probs=299.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM 107 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~ 107 (520)
++++..+..+++.++...++....++..|.+. +++|++..+.|++.+++.+++.++.+++|+++||+|||++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~ 93 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQ--------QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG 93 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH
Confidence 44566667777888888888889999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH---HhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhh
Q psy10491 108 LAYGMVVNAVFALLV---PVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYP 183 (520)
Q Consensus 108 l~~~~~~~~~~~~~~---~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~ 183 (520)
++++.++.+++.+++ ++++ ++ .++++|+++|++.+...+...++++|++|+++|++++++.+.+.++|.+++++
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 171 (438)
T 3o7q_A 94 IITGLFLYALGAALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVV 171 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccc--cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 7775 66 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhh-ccccccC-------------------------cchHHHHHHHHHHHHHHHHHHH-hhcCCCCCCCCChHHHHH
Q psy10491 184 VSGYLA-YGTFLQG-------------------------WPAIFYVFGVICLIWCVLFIFL-VYENPHSDKRVSVEEKEY 236 (520)
Q Consensus 184 l~~~l~-~~~~~~g-------------------------wr~~f~i~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~ 236 (520)
+++.+. +. .+ ||+.|++.+++.++..++.++. .||++++.++.+
T Consensus 172 ~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~------ 242 (438)
T 3o7q_A 172 FGQSLILSN---VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA------ 242 (438)
T ss_dssp HTTHHHHTS---SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS------
T ss_pred HHHHHHhcc---cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc------
Confidence 999998 54 33 9999988887776644443332 233332211100
Q ss_pred HHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHH-HHhhcCCCcchhHHHHHhHHHHHHH
Q psy10491 237 ILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTF-LKEVLHFDMIKNGLISATPYIAMFI 315 (520)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~ 315 (520)
+++..+..+++++|+|+++...+..++.......+..++|.| +++.+|+++.+++.+.+...++.++
T Consensus 243 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 310 (438)
T 3o7q_A 243 ------------KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFI 310 (438)
T ss_dssp ------------STTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------------cccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHH
Confidence 122233456788999999999999999888889999999999 8888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCC
Q psy10491 316 TSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC 395 (520)
Q Consensus 316 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 395 (520)
+.++.+++.||+++|+.+ ..+..+..++++...+.++ ....+...+.+ ++.+...+....+..+..|+
T Consensus 311 ~~~~~g~l~~r~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 378 (438)
T 3o7q_A 311 GRFTGTWLISRFAPHKVL----------AAYALIAMALCLISAFAGG-HVGLIALTLCS-AFMSIQYPTIFSLGIKNLGQ 378 (438)
T ss_dssp HHHHHHHHHHHSCHHHHH----------HHHHHHHHHHHHHHHHCCH-HHHHHHHHHHH-HHHTTHHHHHHHHHHSSCGG
T ss_pred HHHHHHHHHHHhcchHHH----------HHHHHHHHHHHHHHHHcCC-cHHHHHHHHHH-HHHHHHHHHHHHHHHhhccc
Confidence 999999999999999876 4555555555555554432 23333333444 44455666677776677777
Q ss_pred cchhHHHHHHHHHhhHHhHHHHHHHHhhccccccccch-hHHHHHHHHHHHHHHHHH
Q psy10491 396 FAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLS-WKVVFLVSAVLYITCATV 451 (520)
Q Consensus 396 ~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 451 (520)
+++.+.++.. ...+++.++|.+.|.+.| ..+ ++..|++.+++.++..+.
T Consensus 379 ~~~~~~~~~~-~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 379 DTKYGSSFIV-MTIIGGGIVTPVMGFVSD------AAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp GHHHHHHHHH-HTTHHHHHHHHHHHHHHH------HHTSSGGGGHHHHHHHHHHHHH
T ss_pred cccchhhHHH-HHHHHHHHHHHHHHHHHH------HhcchHHHHHHHHHHHHHHHHH
Confidence 7888888876 778999999999999999 445 777777766555544443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=313.96 Aligned_cols=419 Identities=15% Similarity=0.093 Sum_probs=288.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchh
Q psy10491 28 GYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM 107 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~ 107 (520)
++.+.+.++.+++.++.++|...++..+|.+...+......+.+.+..+.|++.+++.+|..++++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34455556667788889999999999888887433221112223456778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh------------------HhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHH
Q psy10491 108 LAYGMVVNAVFALLVPV------------------SSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGG 168 (520)
Q Consensus 108 l~~~~~~~~~~~~~~~~------------------~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~ 168 (520)
++++.+++.++++++++ ++ ++ +++++|+++|+|.|+..+....+++|+.|+++|++..+
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~--~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~ 165 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG--YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGG--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence 99999999999999985 54 77 99999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHhhhhhhhhhccc-----cccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-hHHHHHHHhhcc
Q psy10491 169 IVYSGAQFGTIISYPVSGYLAYGT-----FLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVS-VEEKEYILYSIF 242 (520)
Q Consensus 169 ~~~~~~~~G~~~g~~l~~~l~~~~-----~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~ 242 (520)
+.+.+..+|.++++.++..+.... ...+||+.+.+..++.++ .++..+++||+|++..... .++..+..++..
T Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL-FLMLLYTVPESPRWLMSRGKQEQAEGILRKIM 244 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH-HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh-hhhhhhcCCCChHHHHHcCchhHHHHhHHHhc
Confidence 999999999999998887766431 114688888777776666 5666778899987643322 222222221111
Q ss_pred CCcc----------ccccccCccchhhhccchhHHHHH-HHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHH
Q psy10491 243 GGDI----------IEDLKASSIPWGDIVKSGPFLSIL-VAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYI 311 (520)
Q Consensus 243 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 311 (520)
.... .....++.......++.++..... ...+....+...+..+.|.+.+. .+.+...........++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 323 (491)
T 4gc0_A 245 GNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGV 323 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHH
Confidence 0000 000011111222233344444333 33334444555666677776666 47777777777888889
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhh---ccCCChHHH-HHHHHHHHHHhhccccccce
Q psy10491 312 AMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPV---ILGFTHTPT-IVCLILAMACNGGIYAGFKV 387 (520)
Q Consensus 312 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 387 (520)
..+++.++.+++.||+|||+.+. .+.....++++.+. ......... ....+...++.....+..+.
T Consensus 324 ~~~~~~~~~~~l~dr~Grr~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
T 4gc0_A 324 INLTFTVLAIMTVDKFGRKPLQI----------IGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWV 393 (491)
T ss_dssp HHHHHHHHHHHHHHHHCSHHHHH----------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCcchhc----------cchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999998863 33333333333222 122222222 22333333344445566678
Q ss_pred eeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHh-cCCCc
Q psy10491 388 NHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLF-SSGRK 460 (520)
Q Consensus 388 ~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 460 (520)
+..|++|.+ |++++|+.+.++.+++.+++.+.+.+.+........++...|++.+++++++.++.+++ ++++.
T Consensus 394 ~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 394 LLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 888999988 99999999999999999999988877651100112344456778888887777766544 44443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-37 Score=298.90 Aligned_cols=356 Identities=15% Similarity=0.159 Sum_probs=291.0
Q ss_pred HHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHH
Q psy10491 35 FMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVV 114 (520)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~ 114 (520)
..+++..+...++...+.+.+|.+. +++|.++.+.+++.+++.+++.+++++.|+++||+|||+++.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 74 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMA--------RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSI 74 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH--------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 4566777788888888899999988 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhcccc
Q psy10491 115 NAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTF 193 (520)
Q Consensus 115 ~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~ 193 (520)
.+++.++.++++ ++ .+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+.
T Consensus 75 ~~~~~~~~~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-- 150 (375)
T 2gfp_A 75 FMLATLVAVTTS--SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-- 150 (375)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH--
T ss_pred HHHHHHHHHHhc--cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--
Confidence 999999999996 66 9999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHH
Q psy10491 194 LQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAH 273 (520)
Q Consensus 194 ~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (520)
.+||+.|++.+++.++..++..+.+||+++++++ +++.+.++++++|+|+++...+..
T Consensus 151 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 151 -WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP---------------------RTRLLTSYKTLFGNSGFNCYLLML 208 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC---------------------CCCTTTCSTHHHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc---------------------cccHHHHHHHHhcCcchHHHHHHH
Confidence 7999999998888877555566667776544221 112334567888999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchh---h
Q psy10491 274 MGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYG---P 350 (520)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~ 350 (520)
++.......+..+.|.|+++.+|.++.+.+.+.+...++.+++.++.+++.||.+++.. .+... .
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~------------~~~~~~~~~ 276 (375)
T 2gfp_A 209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW------------QSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH------------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
Confidence 99999999999999999999889999999999999999999999999999999988322 22211 1
Q ss_pred hhhhhhhhcc-CCChHHHHHHHHHHHHHhhccccccceeeccCCCCcchhHHHHHHHHHhhHHhHHHHHHHHhhcccccc
Q psy10491 351 GLMFIIPVIL-GFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHD 429 (520)
Q Consensus 351 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~ 429 (520)
.......... .++.+......++.++..+...+.......+..|++||++.|+.+...++|..++|.+.|.+.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~----- 351 (375)
T 2gfp_A 277 GLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQ----- 351 (375)
T ss_dssp SSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHH-----
T ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 1111111111 1122333333334444456667777777788888779999999999999999999999999987
Q ss_pred ccchhHHHHHHHH
Q psy10491 430 EMLSWKVVFLVSA 442 (520)
Q Consensus 430 ~~~~~~~~~~~~~ 442 (520)
..++...+.+.+
T Consensus 352 -~~~~~~~~~~~~ 363 (375)
T 2gfp_A 352 -TGQGSLGLLMTL 363 (375)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -CCcccHHHHHHH
Confidence 556766666543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-35 Score=294.63 Aligned_cols=374 Identities=13% Similarity=0.109 Sum_probs=266.2
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcc-cCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccC
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKN-HDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGP 145 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~ 145 (520)
+++|.+..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.+++++++ ++ .++++|+++|++.+.
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~ 124 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPF--GASALFGSIILIIIGTGF 124 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCC--STTHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHh
Confidence 3499999999999999999999999999999999 8999999999999999999999986 67 999999999999999
Q ss_pred chhhHHHHHhhhcCCCc--chhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCC
Q psy10491 146 IVPCTHAILAKWIPPGE--RSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENP 223 (520)
Q Consensus 146 ~~~~~~~~i~~~~~~~~--rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~ 223 (520)
..+...++++|++|+++ |+.++++++.+.++|..++|++++.+.+. .|||+.|++.++..++..++.++..|+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4aps_A 125 LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGMFIGLLVYYFGGKKTL 201 (491)
T ss_dssp HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 99999999999999988 77888889999999999999999999987 89999999988777765555444444432
Q ss_pred CCC-----CCCChHHHHHHHhh----------------ccCCccccc--------------------cccCccchhhhcc
Q psy10491 224 HSD-----KRVSVEEKEYILYS----------------IFGGDIIED--------------------LKASSIPWGDIVK 262 (520)
Q Consensus 224 ~~~-----~~~~~~~~~~~~~~----------------~~~~~~~~~--------------------~~~~~~~~~~~~~ 262 (520)
++. .+.+.++.++..+. ..+....+. .+..+....+..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (491)
T 4aps_A 202 DPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLR 281 (491)
T ss_dssp CSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 211 11112222211111 000000000 0000111111112
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhh
Q psy10491 263 SGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLM 342 (520)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 342 (520)
....+...+..+.....+.....++|.|.++..+.+....+.+.....++.+++.++.+++.||++||+.... ..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~-----~~ 356 (491)
T 4aps_A 282 VVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSP-----TK 356 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CH-----HH
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCch-----HH
Confidence 2234555555556666666677788999998888887888999999999999999999999999999875421 11
Q ss_pred hhhhchhhhhhhhhhhccC--------CChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHh
Q psy10491 343 TSIGEYGPGLMFIIPVILG--------FTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGM 413 (520)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~ 413 (520)
...+..+..+++..+.... .+.+......++.+...+...+....+..+..|++ ||++.|+.+...++|..
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 436 (491)
T 4aps_A 357 FAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA 436 (491)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 1245555555554444321 13333344444444444555666777777877766 99999999999999999
Q ss_pred HHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy10491 414 LAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSG 458 (520)
Q Consensus 414 i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (520)
++|.+.+.+.+ .++...|.+++++.+++.++.+...++
T Consensus 437 i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 437 LNAQLVTLYNA-------KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHGGGGGG-------SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998877 356677888887777777766665443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-32 Score=269.02 Aligned_cols=355 Identities=11% Similarity=0.088 Sum_probs=239.4
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHH---HHHHhHhhhHH-HHHHHHHHHhccc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFA---LLVPVSSQSIW-CLAAVRFIQGMGE 143 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~~~-~l~~~r~l~G~g~ 143 (520)
+++|++..+.|++.+++.+++.++++++|+++||+|||++++++..+.+++. ....+++ ... .++..+++.|++.
T Consensus 36 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 114 (417)
T 2cfq_A 36 DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP-LLQYNILVGSIVGGIYL 114 (417)
T ss_dssp TTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH-HHHTTCCHHHHGGGSST
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999888776532 2223332 111 2455677777776
Q ss_pred cCchhhHHHHHhhhcCC--CcchhHHHHHHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhc
Q psy10491 144 GPIVPCTHAILAKWIPP--GERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYE 221 (520)
Q Consensus 144 ~~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e 221 (520)
+...+.....+.++.++ ++++...+....+..+|..++|.+++++.+ .+||+.|++.+++.++. ++..+..+|
T Consensus 115 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~-~~~~~~~~~ 189 (417)
T 2cfq_A 115 GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALIL-AVLLFFAKT 189 (417)
T ss_dssp THHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTH-HHHSCSSCC
T ss_pred HHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHH-HHHHHHcCc
Confidence 65555545555555433 456778888888899999999999999986 48999999877765543 333333333
Q ss_pred CCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCC---C
Q psy10491 222 NPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHF---D 298 (520)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---s 298 (520)
++++..+.++++ + .++++.....+++++++|+++...+..+.....+..+..++|.|+.+.++. +
T Consensus 190 ~~~~~~~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (417)
T 2cfq_A 190 DAPSSATVANAV---------G---ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQG 257 (417)
T ss_dssp CCSCSSCSSSSS---------S---SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHH
T ss_pred cccccccccccc---------c---cccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 322111000000 0 001111122456788899988777766665666666667788888765442 2
Q ss_pred cchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHh
Q psy10491 299 MIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACN 378 (520)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (520)
....++..+...++.+++.++.+++.||+++|+.+ ..+..+.++.+..+.+.+ +.+.......+.....
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 326 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL----------LLAGTIMSVRIIGSSFAT-SALEVVILKTLHMFEV 326 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH----------HHHHHHHHHHHHHHTTCC-SHHHHHHHTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH----------HHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHH
Confidence 34457777778888889999999999999999876 345555555554444433 2222222222222222
Q ss_pred hccccccceeeccCCCCc-chhHHHHH-HHHHhhHHhHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 379 GGIYAGFKVNHIDISPCF-AGILMSIT-NCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 379 ~~~~~~~~~~~~~~~p~~-~g~~~g~~-~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
....+....+..|..|++ ||++.|+. +....+|+.++|.+.|.+.+ ..++...|.+.+++.+++.++.+...
T Consensus 327 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~------~~g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 327 PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE------SIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH------HSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH------hcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 223333455677777766 99999994 88889999999999999998 55788889888888888777665543
Q ss_pred C
Q psy10491 457 S 457 (520)
Q Consensus 457 ~ 457 (520)
+
T Consensus 401 ~ 401 (417)
T 2cfq_A 401 S 401 (417)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-29 Score=255.34 Aligned_cols=375 Identities=13% Similarity=0.049 Sum_probs=223.9
Q ss_pred CCCC------CChhhhHHHHHHHHHHHHHhhhhhhhhhccc-CcchhHHHHHHHHHHHHHHHHhHhh-hHHHHHHHHHHH
Q psy10491 68 DSKS------WSTVERGLLLSSFFYGYVLTQIPIGLLTKNH-DSHKMLAYGMVVNAVFALLVPVSSQ-SIWCLAAVRFIQ 139 (520)
Q Consensus 68 ~~~~------~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~ 139 (520)
+++| ++..+.|++.+++.+++.++.++.|+++||+ |||+++.++.++.+++.++.+++ + +.+.+++.|++.
T Consensus 41 ~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 119 (524)
T 2xut_A 41 TALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-EHSVQGFYTGLFLI 119 (524)
T ss_dssp HSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHH
T ss_pred HHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 5677 9999999999999999999999999999999 99999999999999999999887 4 445889999999
Q ss_pred hccccCchhhHHHHHhhhcCCCcchhHHHH---HHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHH
Q psy10491 140 GMGEGPIVPCTHAILAKWIPPGERSFLGGI---VYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFI 216 (520)
Q Consensus 140 G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~---~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~ 216 (520)
|++.+...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+.+. .|||+.|++.+++.++..++.+
T Consensus 120 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 120 ALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999877666 8999999999999999999887 7999999998887766444433
Q ss_pred HHhhcCCCCCCCCCh-HHHHHH-HhhccCCccc-cc-------------------------------------cccCccc
Q psy10491 217 FLVYENPHSDKRVSV-EEKEYI-LYSIFGGDII-ED-------------------------------------LKASSIP 256 (520)
Q Consensus 217 ~~~~e~~~~~~~~~~-~~~~~~-~~~~~~~~~~-~~-------------------------------------~~~~~~~ 256 (520)
+..|+.++..++.+. .+..+. .....+.... +. ++..+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (524)
T 2xut_A 197 LGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGA 276 (524)
T ss_dssp SSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGG
T ss_pred HhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccch
Confidence 322222111110000 000000 0000000000 00 0000001
Q ss_pred h------------hhhccchhHHHHHHHHHHHHHHHHH---HHHHhHHHHHhhcCCCc-chhHHHHHhHHHHHHHHHHHH
Q psy10491 257 W------------GDIVKSGPFLSILVAHMGQNFGYET---LMTMLPTFLKEVLHFDM-IKNGLISATPYIAMFITSSVL 320 (520)
Q Consensus 257 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~ 320 (520)
+ .+..+.++.+............... ....++.+..+ .+.+. ...+.+.....++.+++.++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (524)
T 2xut_A 277 SLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND-MVKPQWFEPAMMQALNPLLVMLLIPFN 355 (524)
T ss_dssp GTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH-SCCCSSSCHHHHHTTSGGGHHHHGGGT
T ss_pred hhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh-cCCCeeecHHHHHHHHHHHHHHhHHHH
Confidence 1 0111122222222222111111111 11223333222 23222 245666666666666666666
Q ss_pred HHHH----HHHHhhccccccchhhhhhhhhchhhhhhhhhhhccC--------CChHHHHHHHHHHHHHhhcccccccee
Q psy10491 321 NYLA----DYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILG--------FTHTPTIVCLILAMACNGGIYAGFKVN 388 (520)
Q Consensus 321 g~l~----dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (520)
+++. +|.+++... +....++..+.+++++.+.... .+.+..+...++.+.+.+...+....+
T Consensus 356 ~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 429 (524)
T 2xut_A 356 NFVLYPAIERMGVKLTA------LRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEF 429 (524)
T ss_dssp TTC------------CC------HHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhhhHHHHHhcCCCCCh------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543 444332111 0112355555555555554432 223333333344444445556666667
Q ss_pred eccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchh---------HHHHHHHHHHHHHHHHHHHHhcC
Q psy10491 389 HIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSW---------KVVFLVSAVLYITCATVYLLFSS 457 (520)
Q Consensus 389 ~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 457 (520)
..+..|++ ||+++|+.++..++|+.++|.+.|.+.+.. ..+| ...|++.+++.+++.++.+++.+
T Consensus 430 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 430 AYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT----VTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH----HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc----cccccccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 77776655 999999999999999999999999998711 0112 22366677777766666555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=8.1e-14 Score=138.87 Aligned_cols=173 Identities=11% Similarity=0.068 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhccc--CcchhHHHHHH
Q psy10491 36 MLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNH--DSHKMLAYGMV 113 (520)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~--Grr~~l~~~~~ 113 (520)
.+++..++.......+....|.+.+ +.+|.+..+.+++.+.+.++..++.++.|++.||+ |||+.+.++..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 328 (451)
T 1pw4_A 256 YIAIANVFVYLLRYGILDWSPTYLK-------EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM 328 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBT-------TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 3344444444444455556676663 45899999999999999999999999999999999 99999888877
Q ss_pred HHH-HHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHH-HHHHhhhhhhhhhc
Q psy10491 114 VNA-VFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQF-GTIISYPVSGYLAY 190 (520)
Q Consensus 114 ~~~-~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-G~~~g~~l~~~l~~ 190 (520)
+.. ++.++..+.+..+. .+++.-++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~ 408 (451)
T 1pw4_A 329 TLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 408 (451)
T ss_dssp HHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776 66666666632244 7778888999998888888899999999999999999999999999 99999999999999
Q ss_pred cccccCcchHHHHHHHHHHHHHHHHHHH
Q psy10491 191 GTFLQGWPAIFYVFGVICLIWCVLFIFL 218 (520)
Q Consensus 191 ~~~~~gwr~~f~i~~~~~~~~~~~~~~~ 218 (520)
. .||+..|++.+++.++..++.++.
T Consensus 409 ~---~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 409 F---FGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp S---SCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8 799999999888887755554443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.1e-13 Score=134.71 Aligned_cols=176 Identities=15% Similarity=0.108 Sum_probs=140.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhh-----cCCCcchhHHHHHhHHHHHHHHHHHHHHHHHH-HHhhccccccc
Q psy10491 264 GPFLSILVAHMGQNFGYETLMTMLPTFLKEV-----LHFDMIKNGLISATPYIAMFITSSVLNYLADY-FIRKKILSTGA 337 (520)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~ 337 (520)
+.++.+.+..++..+.++.+..+++.|+++. +|.+..+.+++.+...++..++.++.|+++|| +|||+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~---- 88 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV---- 88 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH----
Confidence 4567777788888888899999999999998 89999999999999999999999999999999 8999987
Q ss_pred hhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCC-Cc--chhHHHHHHHHHhhHHhH
Q psy10491 338 TRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISP-CF--AGILMSITNCSANVVGML 414 (520)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~--~g~~~g~~~~~~~~g~~i 414 (520)
..+.++..++.+...+.++.....+..++.+ .+.+...+....+..|..| ++ |+.+.++.+...++|..+
T Consensus 89 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 161 (491)
T 4aps_A 89 ------FWGGVLIMLGHIVLALPFGASALFGSIILII-IGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI 161 (491)
T ss_dssp ------HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH
Confidence 5667777777776666654444444444444 4445566667777777665 44 777888899999999999
Q ss_pred HHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy10491 415 APTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFS 456 (520)
Q Consensus 415 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (520)
+|.+.+.+.+ ..+|+..|++.++..+++.+..++..
T Consensus 162 ~~~~~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 162 APLIVGAAQE------AAGYHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHHHHH------HSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999998 57899999998887777776665543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=9.2e-13 Score=129.78 Aligned_cols=147 Identities=9% Similarity=0.019 Sum_probs=122.6
Q ss_pred ChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCchhhHH
Q psy10491 73 STVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPIVPCTH 151 (520)
Q Consensus 73 s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~~~~~~ 151 (520)
+....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.+ +. .+++..++.+++.+...+...
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~ 334 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC--SHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888899999999999999999999999999888888877777764 44 777778888887776677778
Q ss_pred HHHhhhcCCCcchhHHHH-HHHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy10491 152 AILAKWIPPGERSFLGGI-VYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPH 224 (520)
Q Consensus 152 ~~i~~~~~~~~rg~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~ 224 (520)
.++.|.+|++.|+.+.++ ++....+|..++|.+++.+.+. .|++..|.+.+++.++..++.++..||+++
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH---SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 999999999999999999 4888889999999999999886 789999998888887766665555665443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=131.52 Aligned_cols=176 Identities=15% Similarity=0.095 Sum_probs=137.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcC------CCcchhHHHHHhHHHHHHHHHHHHHHHHHHH-Hhhcccccc
Q psy10491 264 GPFLSILVAHMGQNFGYETLMTMLPTFLKEVLH------FDMIKNGLISATPYIAMFITSSVLNYLADYF-IRKKILSTG 336 (520)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~ 336 (520)
+.++.+.+..++..+.++++..+++.|+++.+| +++.+.+++.+...++..++.++.|+++||+ |||+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~--- 88 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI--- 88 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH---
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH---
Confidence 456777788888888888899999999988889 9999999999999999999999999999999 999886
Q ss_pred chhhhhhhhhchhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHH---HHHHHhhHH
Q psy10491 337 ATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSI---TNCSANVVG 412 (520)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~---~~~~~~~g~ 412 (520)
.++.++..++.+...+...+.+..++..++.+.+.+...+....+..+..|++ |+++.+. .+...++|.
T Consensus 89 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 89 -------LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp -------HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 46666666666666655423444444444444455667777777788877665 8766655 889999999
Q ss_pred hHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHh
Q psy10491 413 MLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLF 455 (520)
Q Consensus 413 ~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (520)
.++|.+.+.+.+ ..+|+..|++.+++.+++.++.+..
T Consensus 162 ~~g~~~~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 162 FFASLSMPLLLK------NFGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHHHTSTHHHH------TSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhc------cccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988 5689999998888877766655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-12 Score=126.30 Aligned_cols=178 Identities=15% Similarity=0.142 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhh
Q psy10491 266 FLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSI 345 (520)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 345 (520)
+..+.+..+...+.........|.+.++ +|.+..+.+++.+...++..++.++.|+++||+|||+.+ ..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l----------~~ 96 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQA-FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI----------IT 96 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH----------HH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH----------HH
Confidence 4445555555566666666777775555 799999999999999999999999999999999999987 56
Q ss_pred hchhhhhhhhhh---hccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHH
Q psy10491 346 GEYGPGLMFIIP---VILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGL 421 (520)
Q Consensus 346 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~ 421 (520)
+.++..++.+.. ...+ +.+..++..++.+.+.+...+....+..+..|++ |+.++|+.+....+|..++|.+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 97 GLFLYALGAALFWPAAEIM-NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHhccccc-cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655 4444 3444444444444555666667777778877755 9999999999999999999999999
Q ss_pred hh-ccccc-------------------cccchhHHHHHHHHHHHHHHHHHHHHh
Q psy10491 422 LL-NWFQH-------------------DEMLSWKVVFLVSAVLYITCATVYLLF 455 (520)
Q Consensus 422 l~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (520)
+. +..+. ....+|+..|++.++..++..++.++.
T Consensus 176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 176 LILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp HHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 51100 000118888887777766666555543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.8e-12 Score=122.15 Aligned_cols=166 Identities=15% Similarity=0.116 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhc
Q psy10491 268 SILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGE 347 (520)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 347 (520)
.+.+..++.......+...+|.+.++ +|.++.+.+++.+...++..++.++.|+++||+|||+.+ ..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~----------~~~~ 72 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI----------LVGM 72 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC----------HHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH----------HHHH
Confidence 44555666666677777778877665 799999999999999999999999999999999999987 4666
Q ss_pred hhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCC-CcchhHHHHHHHHHhhHHhHHHHHHHHhhccc
Q psy10491 348 YGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISP-CFAGILMSITNCSANVVGMLAPTISGLLLNWF 426 (520)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 426 (520)
.+..++.....+.+ +.+......++.+.+.+...+....+..|..| ++|++++++.+....+|..++|.+.+.+.+
T Consensus 73 ~~~~~~~~~~~~~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-- 149 (375)
T 2gfp_A 73 SIFMLATLVAVTTS-SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-- 149 (375)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC--
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--
Confidence 66666666555544 33333334444444445566666777777765 559999999999999999999999999988
Q ss_pred cccccchhHHHHHHHHHHHHHHHHH
Q psy10491 427 QHDEMLSWKVVFLVSAVLYITCATV 451 (520)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (520)
..+|+..|++.++..++..+.
T Consensus 150 ----~~~~~~~~~~~~~~~~~~~~~ 170 (375)
T 2gfp_A 150 ----MWNWRACYLFLLVLCAGVTFS 170 (375)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHCC
T ss_pred ----hccHHHHHHHHHHHHHHHHHH
Confidence 568999998888777666553
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-10 Score=115.88 Aligned_cols=157 Identities=9% Similarity=-0.003 Sum_probs=119.6
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhh---HH-H-HHHHHHHHhcc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQS---IW-C-LAAVRFIQGMG 142 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~---~~-~-l~~~r~l~G~g 142 (520)
+..+.+............+...++.++.+++.||+|||+.++.+....+++.+..+..... .+ . ....-+..+++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4gc0_A 305 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA 384 (491)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 5666677777777788888899999999999999999999999988888877766544211 22 2 22222333333
Q ss_pred ccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhhhhhhhhhccc---cccCcchHHHHHHHHHHHHHHHHHHHh
Q psy10491 143 EGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGT---FLQGWPAIFYVFGVICLIWCVLFIFLV 219 (520)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~---~~~gwr~~f~i~~~~~~~~~~~~~~~~ 219 (520)
. ...+....+.+|.+|.+.|++++|+......+|..+++.+.+.+.+.. ...++.+.|++.+.++++..+..++++
T Consensus 385 ~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~ 463 (491)
T 4gc0_A 385 M-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFV 463 (491)
T ss_dssp T-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred h-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhee
Confidence 3 345777899999999999999999999999999999888876664420 114677889999999999888889999
Q ss_pred hcCCCC
Q psy10491 220 YENPHS 225 (520)
Q Consensus 220 ~e~~~~ 225 (520)
||++..
T Consensus 464 PETkg~ 469 (491)
T 4gc0_A 464 PETKGK 469 (491)
T ss_dssp CCCTTC
T ss_pred cCCCCC
Confidence 998654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 520 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 4e-27 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 1e-05 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 5e-05 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 2e-04 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 111 bits (278), Expect = 4e-27
Identities = 77/459 (16%), Positives = 161/459 (35%), Gaps = 28/459 (6%)
Query: 12 PATKPPKILKPKPKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKS 71
P + P R +F G A Y++R N ++A+ + +
Sbjct: 5 PHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV---------EQG 55
Query: 72 WSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFAL---LVPVSSQS 128
+S + G LS Y ++ +G ++ + L G+++ A L VP ++ S
Sbjct: 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115
Query: 129 IWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYL 188
I + + F+ G +G P + W ER + + G I +
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175
Query: 189 AYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIE 248
Y+ ++ + ++ + P S +EE + + +
Sbjct: 176 MAWFNDWHAA--LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQ 233
Query: 249 DLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISAT 308
+L A I ++ + I +A++ ++ PT+LKEV HF + K+
Sbjct: 234 ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFL 293
Query: 309 PYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTI 368
A + + +++D R +TG + +I + + T +
Sbjct: 294 YEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA------TIVYWMNPAGNPTVDM 347
Query: 369 VCLILAMACNGGIYAGFKVNHIDISP-CFAGILMSITNCSANVVGM-LAPTISGLLLNWF 426
+C+I+ G ++ ++++P AG T + G A I G +++F
Sbjct: 348 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 407
Query: 427 QHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYWDK 465
W F+V I + ++ G K+ ++
Sbjct: 408 ------GWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQ 440
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 45.1 bits (105), Expect = 1e-05
Identities = 15/215 (6%), Positives = 53/215 (24%), Gaps = 4/215 (1%)
Query: 8 TSIDPATKPPKILKPKPKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHV 67
L + + YV+ + + +
Sbjct: 191 APSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF 250
Query: 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQ 127
+ +++ + + L N K ++ +
Sbjct: 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT 310
Query: 128 SIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYS-GAQFGTIISYPVSG 186
S + ++ + ++ + + + + + Q I ++G
Sbjct: 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG 370
Query: 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYE 221
+ G+ + V G++ L + ++ +F +
Sbjct: 371 NMYESI---GFQGAYLVLGLVALGFTLISVFTLSG 402
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 43.2 bits (100), Expect = 5e-05
Identities = 42/397 (10%), Positives = 102/397 (25%), Gaps = 30/397 (7%)
Query: 67 VDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSS 126
D S + G++ ++ +L Q GLL+ K L + + V +
Sbjct: 35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI 94
Query: 127 QSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPP--GERSFLGGIVYSGAQFGTIISYPV 184
L + + G + A + + S + A+ + + +
Sbjct: 95 FGPL-LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL 153
Query: 185 SGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGG 244
+ F +F++ LI VL F + P S + + +S+
Sbjct: 154 GASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLK-- 211
Query: 245 DIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGL 304
++ K ++ ++ T G
Sbjct: 212 --------LALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGY 263
Query: 305 ISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTH 364
++ + + + K + + I
Sbjct: 264 VTTMGELLNASIMFFAPLIINRIGGKN----------ALLLAGTIMSVRIIGSSFATSAL 313
Query: 365 TPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGM-LAPTISGLLL 423
I+ + + FK F+ + + C + M ++G +
Sbjct: 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373
Query: 424 NWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRK 460
++ +LV ++ + + + SG
Sbjct: 374 ESI------GFQGAYLVLGLVALGFTLISVFTLSGPG 404
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 27/248 (10%), Positives = 57/248 (22%), Gaps = 10/248 (4%)
Query: 262 KSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLN 321
K+ F + F P +L ++ H G+I A + + +
Sbjct: 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFG 64
Query: 322 YLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGI 381
L+D +K L G +MF I F L+ ++ +
Sbjct: 65 LLSDKLGLRKYL----------LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL 114
Query: 382 YAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVS 441
F + + + + + V +L S
Sbjct: 115 GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGS 174
Query: 442 AVLYITCATVYLLFSSGRKQYWDKNGGEGRMERGRKWQCVAECELMCLLRRTFQSWILFN 501
I ++ + N + L + +
Sbjct: 175 GCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSC 234
Query: 502 ICGLGNQV 509
+ +Q
Sbjct: 235 TYDVFDQQ 242
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 520 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.52 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.4 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-42 Score=343.35 Aligned_cols=409 Identities=17% Similarity=0.188 Sum_probs=314.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcc
Q psy10491 26 GLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSH 105 (520)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr 105 (520)
.+++||.++..++++++..++++..++.+.|.+. |+|+|.+|+|++.+++.+++.++++++|+++||+|||
T Consensus 19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~---------~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r 89 (447)
T d1pw4a_ 19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV---------EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR 89 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT---------SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 3456788888899999999999999999988775 5799999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhHhh--hHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhh
Q psy10491 106 KMLAYGMVVNAVFALLVPVSSQ--SIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISY 182 (520)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~--~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~ 182 (520)
+++.++.++.+++.+++++++. +++ .+++.|++.|++.+...+...++++|++|+++|++++++.+.+..+|.++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~ 169 (447)
T d1pw4a_ 90 VFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPP 169 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhh
Confidence 9999999999999999887631 256 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhcc
Q psy10491 183 PVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVK 262 (520)
Q Consensus 183 ~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (520)
.+++.+.... .+||+.|++.+.+.++..++.+++++|+|++......++.+....+...+..+++....+...+..++
T Consensus 170 ~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (447)
T d1pw4a_ 170 LLFLLGMAWF--NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP 247 (447)
T ss_dssp HHHHHHHHHT--CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSS
T ss_pred hhhhhHhhhh--hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHc
Confidence 9988877652 58999999999999887888888888877654333222211100000011111122233345667888
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhh
Q psy10491 263 SGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLM 342 (520)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 342 (520)
+|.++......++.....+....+.|.|+.+.++++..+.+.......+..+++.++.|++.||+++++....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------- 320 (447)
T d1pw4a_ 248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT------- 320 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH-------
T ss_pred CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999988764311
Q ss_pred hhhhchhhhhhhhhhhccCC-ChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhH-HhHHHHHH
Q psy10491 343 TSIGEYGPGLMFIIPVILGF-THTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVV-GMLAPTIS 419 (520)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g-~~i~~~~~ 419 (520)
......+..++......... +.+......++.++......+.......+..|++ +|++.|+.+.+.+++ ..++|.+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~ 400 (447)
T d1pw4a_ 321 GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 400 (447)
T ss_dssp HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222223333322222 3334344444434444455556666777777776 999999999998875 56789999
Q ss_pred HHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy10491 420 GLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSG 458 (520)
Q Consensus 420 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (520)
|.+.| ..++...|++.+++.+++.++.+.+..+
T Consensus 401 g~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 401 GYTVD------FFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HHHHH------SSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH------HhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 6688888888888777777666655443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.8e-29 Score=246.53 Aligned_cols=382 Identities=11% Similarity=0.051 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHH
Q psy10491 36 MLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVN 115 (520)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~ 115 (520)
.+.+.++...+....+.+.+|.... +++|+|.+++|++.+++.+++.++++++|+++||+||||+++++..+.
T Consensus 11 ~l~~~~f~~~~~~~~~~~~l~~~l~-------~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~ 83 (417)
T d1pv7a_ 11 MFGLFFFFYFFIMGAYFPFFPIWLH-------DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGM 83 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 3444455555555566666665331 679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhh--HH-HHHHHHHHHhccccCchhhHHHHHhhhcCC--CcchhHHHHHHHHhHHHHHHhhhhhhhhhc
Q psy10491 116 AVFALLVPVSSQS--IW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPP--GERSFLGGIVYSGAQFGTIISYPVSGYLAY 190 (520)
Q Consensus 116 ~~~~~~~~~~~~~--~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~ 190 (520)
.++.++..+.... .. ..++.+.+.+.+.+...........+..++ +++....+........+..+++.+++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (417)
T d1pv7a_ 84 LVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163 (417)
T ss_dssp HHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc
Confidence 9888888776411 23 456677777777666666655555554433 345667788888889999999999999887
Q ss_pred cccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHH
Q psy10491 191 GTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSIL 270 (520)
Q Consensus 191 ~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (520)
. +|+..+........+..++..+..+|+++..++.+++++. +++.......+..+++..+...
T Consensus 164 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 226 (417)
T d1pv7a_ 164 I----NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGAN-------------HSAFSLKLALELFRQPKLWFLS 226 (417)
T ss_dssp H----CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSC-------------CCCCCHHHHHHHTTSSHHHHHH
T ss_pred c----cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhh-------------cccccccccccccccccccchh
Confidence 4 7777777777777776777777777766654433222110 1122222333444445544444
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhh---cCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhc
Q psy10491 271 VAHMGQNFGYETLMTMLPTFLKEV---LHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGE 347 (520)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 347 (520)
.................+.+.... .+.+....+.......++..++..+.+++.||.++++.+ .++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~----------~~~~ 296 (417)
T d1pv7a_ 227 LYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL----------LLAG 296 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHH----------HHHH
T ss_pred hhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccch----------hhhH
Confidence 444444444434433333333322 234455667778888888999999999999999999886 5666
Q ss_pred hhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHH-HHHHhhHHhHHHHHHHHhhcc
Q psy10491 348 YGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSIT-NCSANVVGMLAPTISGLLLNW 425 (520)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~-~~~~~~g~~i~~~~~g~l~~~ 425 (520)
.+..+..+.+.+.++..... ...++.+...+...+....+..+..|++ |+++.|+. +....+|..++|.+.|++.|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~- 374 (417)
T d1pv7a_ 297 TIMSVRIIGSSFATSALEVV-ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE- 374 (417)
T ss_dssp HHHHHHHHHHHTCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhhccccccccchhh-HHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 66667666666665443333 3333434444555666666777777665 99999985 45677999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy10491 426 FQHDEMLSWKVVFLVSAVLYITCATVYLLFSSG 458 (520)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (520)
..|++..|++.+++.++..++.++..++
T Consensus 375 -----~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 375 -----SIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp -----HHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred -----HHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 6789999999988888877776666544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=8.6e-15 Score=141.11 Aligned_cols=151 Identities=9% Similarity=0.015 Sum_probs=134.3
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~ 146 (520)
++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.+ +. .+++..++.|++.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~ 329 (417)
T d1pv7a_ 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFL 329 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccccc--ccchhhHHHHHHHHHHHHH
Confidence 45566778889999999999999999999999999999999999999999999998885 55 8888999999999999
Q ss_pred hhhHHHHHhhhcCCCcchhHHHHH-HHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCC
Q psy10491 147 VPCTHAILAKWIPPGERSFLGGIV-YSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENP 223 (520)
Q Consensus 147 ~~~~~~~i~~~~~~~~rg~~~~~~-~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~ 223 (520)
.+...+++.|.+|+++|+++.++. +....+|..++|.++|++.+. .||+..|++.+++.++..++..+.++++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999986 456779999999999999998 89999999999988887777777766543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=7.1e-13 Score=129.32 Aligned_cols=160 Identities=18% Similarity=0.182 Sum_probs=116.5
Q ss_pred HHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccC--
Q psy10491 284 MTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILG-- 361 (520)
Q Consensus 284 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 361 (520)
....| ++++ +|+|..+.|++.+...++..++.++.|+++||+|||+.+ .++.++..++.+......
T Consensus 45 ~~~~p-~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~----------~~~~~~~~~~~~~~~~~~~~ 112 (447)
T d1pw4a_ 45 ALAMP-YLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL----------PAGLILAAAVMLFMGFVPWA 112 (447)
T ss_dssp HHHHH-HTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH----------HHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHH-HHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH----------HHHHHHHHHHHhhccccchh
Confidence 33344 5566 699999999999999999999999999999999999987 455555555555444332
Q ss_pred -CChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHH
Q psy10491 362 -FTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFL 439 (520)
Q Consensus 362 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~ 439 (520)
++.....+.-++.+.+.+...+....+..+..|++ |++++|+.+....+|..++|.+.+.+.+. ..+|+..++
T Consensus 113 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~-----~~~w~~~~~ 187 (447)
T d1pw4a_ 113 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW-----FNDWHAALY 187 (447)
T ss_dssp HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-----TCCSTTCTH
T ss_pred hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh-----hhcccccch
Confidence 23334444444444444556666677777777655 99999999999999999999998887762 347788888
Q ss_pred HHHHHHHHHHHHHHHhcCCCc
Q psy10491 440 VSAVLYITCATVYLLFSSGRK 460 (520)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~ 460 (520)
+.+.+.++..++.+...++.+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~ 208 (447)
T d1pw4a_ 188 MPAFCAILVALFAFAMMRDTP 208 (447)
T ss_dssp HHHHHHHHHHHHHHHHCCCSS
T ss_pred hhhhhHHHHHHHHHHhcccch
Confidence 887777776666666554433
|