Psyllid ID: psy10504

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MTKSQNKEIVSGGRGNENNLGTIAIEVKSMVLIYSISKFPIPMGREMEIYAYYQGLVTIEVCHLLYKISSHTASWSLFVILSVFLVPTDLLPRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCSSCSIL
Secondary Structure (PSIPRED)
ccccccccEEccccccccccEEEEEEEEEEEEEEEEcccccccccEEEEEEEEccEEEEEEEEEEEEEEccccccEEEEEEEEcccccccccccccccccccEEEEEEEEccccccHHHHHHHHHHccccccccccccccEEEEEEEccEEEEEEEEEcccHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHccccccccccccccccEEc
Secondary Structure Prediction (SSPRO)
cccccccEEEcccccccccccEEEEEEEEEEEEEEEcccccccccHEEEEEHHcccEEEEHHHHHHHcccccccccEEEEEcccccccccccccccccccHcEEEEEEEEEcccccHHHHHHHHHHcccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHHHccEEEEEEEcccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHHcccccccccccccEEEc
Coil and Loop (DISEMBL)
mtksqnkeivsggrgnennlgTIAIEVKSMVLIYSIskfpipmgreMEIYAYYQGLVTIEVCHLLYKISSHTASWSLFVILSVFlvptdllprcsidnsftmREFKVVVLgsggvgksaLTVQFVSgcfmekydptieDFYRKeievdkapcVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKldlashqrevptldgqalaqswgcpfieasaknkTNVNEMFAEIVREmnfnpekdnasfcwcsscsil
Flexible Loop (DISEMBL)
mtksqnkeivsggrgnennlgTIAIEVKSMVLIYSISKFPIPMGREMEIYAYYQGLVTIEVCHLLYKISSHTASWSLFVILSVFLVPTDLLPRCSIDNSFTMREFKVVVLgsggvgksALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFnpekdnasfcwcsscsil
Low Complexity Region (SEG)
MTKSQNKEIVSGGRGNENNLGTIAIEVKSMVLIYSISKFPIPMGREMEIYAYYQGLVTIEVCHLLYKISSHTASWSLFVILSVFLVPTDLLPRCSIDNSFTMREFkvvvlgsggvgksALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCSSCSIL
Disordered region (IsUnstruct)
******************NLGTIAIEVKSMVLIYSISKFPIPMGREMEIYAYYQGLVTIEVCHLLYKISSHTASWSLFVILSVFLVPTDLLPRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCSSC***
Disordered Region (DISOPRED)
*****************NNLGTIAIEVKSMVLIYSISKFPIPMGREMEIYAYYQGLVTIEVCHLLYKISSHTASWSLFVILSVFLV********************VVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV****************CSSCSIL
Disordered Region (DISEMBL)
**********SGGRGNENNLGTIAIEVKSMVLIYSISKFPIPMGREMEIYAYYQGLVTIEVCHLLYKISSHTASWSLFVILSVFLVPTDLLPRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCSSCSIL
Disordered Region (DISPRO)
******KEIVS*GRGNENNLGTIAIEVKSMVLIYSISKFPIPMGREMEIYAYYQGLVTIEVCHLLYKISSHTASWSLFVILSVFLVPTDLLPR**IDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPE***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKSQNKEIVSGGRGNENNLGTIAIEVKSMVLIYSISKFPIPMGREMEIYAYYQGLVTIEVCHLLYKISSHTASWSLFVILSVFLVPTDLLPRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCSSCSIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
Q5R988	183	Ras-related protein Rap-2	yes	N/A	0.636	0.994	0.706	1e-65
Q80ZJ1	183	Ras-related protein Rap-2	yes	N/A	0.636	0.994	0.706	1e-65
P61227	183	Ras-related protein Rap-2	yes	N/A	0.639	1.0	0.697	3e-64
P61226	183	Ras-related protein Rap-2	no	N/A	0.639	1.0	0.697	3e-64
P61225	183	Ras-related protein Rap-2	yes	N/A	0.639	1.0	0.697	3e-64
Q06AU2	183	Ras-related protein Rap-2	yes	N/A	0.639	1.0	0.697	3e-64
Q8BU31	183	Ras-related protein Rap-2	no	N/A	0.629	0.983	0.688	1e-63
Q9Y3L5	183	Ras-related protein Rap-2	no	N/A	0.629	0.983	0.688	1e-63
Q08DI5	183	Ras-related protein Rap-2	no	N/A	0.629	0.983	0.688	1e-63
P10114	183	Ras-related protein Rap-2	no	N/A	0.636	0.994	0.690	2e-62

>sp|Q5R988|RAP2A_PONAB Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2A PE=2 SV=2

 Score =  249 bits (637), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 130/184 (70%), Positives = 157/184 (85%), Gaps = 2/184 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MRE+KVVVLGSGGVGKSALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  E+VP++LV NK+DL
Sbjct: 61  TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
            S +REV + +G+ALA+ WGCPF+E SAK+KT V+E+FAEIVR+MN+  + D    C CS
Sbjct: 121 ES-EREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNYAAQPDKDDPC-CS 178

Query: 282 SCSI 285
           +C+I
Sbjct: 179 ACNI 182

Small GTP-binding protein which cycles between a GDP-bound inactive and a GTP-bound active form. In its active form interacts with and regulates several effectors including MAP4K4, MINK1 and TNIK. Part of a signaling complex composed of NEDD4, RAP2A and TNIK which regulates neuronal dendrite extension and arborization during development. More generally, it is part of several signaling cascades and may regulate cytoskeletal rearrangements, cell migration, cell adhesion and cell spreading.
Pongo abelii (taxid: 9601)

>sp|Q80ZJ1|RAP2A_MOUSE Ras-related protein Rap-2a OS=Mus musculus GN=Rap2a PE=1 SV=2

 Score =  249 bits (637), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 130/184 (70%), Positives = 157/184 (85%), Gaps = 2/184 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MRE+KVVVLGSGGVGKSALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  E+VP++LV NK+DL
Sbjct: 61  TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
            S +REV + +G+ALA+ WGCPF+E SAK+KT V+E+FAEIVR+MN+  + D    C CS
Sbjct: 121 ES-EREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNYAAQPDKDDPC-CS 178

Query: 282 SCSI 285
           +C+I
Sbjct: 179 ACNI 182

Small GTP-binding protein which cycles between a GDP-bound inactive and a GTP-bound active form. In its active form interacts with and regulates several effectors including MAP4K4, MINK1 and TNIK. Part of a signaling complex composed of NEDD4, RAP2A and TNIK which regulates neuronal dendrite extension and arborization during development. More generally, it is part of several signaling cascades and may regulate cytoskeletal rearrangements, cell migration, cell adhesion and cell spreading.

Mus musculus (taxid: 10090)

>sp|P61227|RAP2B_RAT Ras-related protein Rap-2b OS=Rattus norvegicus GN=Rap2b PE=2 SV=1

 Score =  245 bits (625), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 129/185 (69%), Positives = 154/185 (83%), Gaps = 2/185 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MRE+KVVVLGSGGVGKSALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  ERVP++LV NK+DL
Sbjct: 61  TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
              +REV   +G+ALA+ W CPF+E SAKNK +V+E+FAEIVR+MN+  + +    C CS
Sbjct: 121 EG-EREVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGC-CS 178

Query: 282 SCSIL 286
           +C IL
Sbjct: 179 ACVIL 183

Small GTP-binding protein which cycles between a GDP-bound inactive and a GTP-bound active form. Involved in EGFR and CHRM3 signaling pathways through stimulation of PLCE1. May play a role in cytoskeletal rearrangements and regulate cell spreading through activation of the effector TNIK. May regulate membrane vesiculation in red blood cells.

Rattus norvegicus (taxid: 10116)

>sp|P61226|RAP2B_MOUSE Ras-related protein Rap-2b OS=Mus musculus GN=Rap2b PE=1 SV=1

 Score =  245 bits (625), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 129/185 (69%), Positives = 154/185 (83%), Gaps = 2/185 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MRE+KVVVLGSGGVGKSALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  ERVP++LV NK+DL
Sbjct: 61  TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
              +REV   +G+ALA+ W CPF+E SAKNK +V+E+FAEIVR+MN+  + +    C CS
Sbjct: 121 EG-EREVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGC-CS 178

Query: 282 SCSIL 286
           +C IL
Sbjct: 179 ACVIL 183

Small GTP-binding protein which cycles between a GDP-bound inactive and a GTP-bound active form. Involved in EGFR and CHRM3 signaling pathways through stimulation of PLCE1. May play a role in cytoskeletal rearrangements and regulate cell spreading through activation of the effector TNIK. May regulate membrane vesiculation in red blood cells.

Mus musculus (taxid: 10090)

>sp|P61225|RAP2B_HUMAN Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2B PE=1 SV=1

 Score =  245 bits (625), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 129/185 (69%), Positives = 154/185 (83%), Gaps = 2/185 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MRE+KVVVLGSGGVGKSALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  ERVP++LV NK+DL
Sbjct: 61  TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
              +REV   +G+ALA+ W CPF+E SAKNK +V+E+FAEIVR+MN+  + +    C CS
Sbjct: 121 EG-EREVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGC-CS 178

Query: 282 SCSIL 286
           +C IL
Sbjct: 179 ACVIL 183

Small GTP-binding protein which cycles between a GDP-bound inactive and a GTP-bound active form. Involved in EGFR and CHRM3 signaling pathways through stimulation of PLCE1. May play a role in cytoskeletal rearrangements and regulate cell spreading through activation of the effector TNIK. May regulate membrane vesiculation in red blood cells.

Homo sapiens (taxid: 9606)

>sp|Q06AU2|RAP2A_PIG Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A PE=2 SV=1

 Score =  245 bits (625), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 129/185 (69%), Positives = 154/185 (83%), Gaps = 2/185 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MRE+KVVVLGSGGVGKSALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  ERVP++LV NK+DL
Sbjct: 61  TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
              +REV   +G+ALA+ W CPF+E SAKNK +V+E+FAEIVR+MN+  + +    C CS
Sbjct: 121 EG-EREVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGC-CS 178

Query: 282 SCSIL 286
           +C IL
Sbjct: 179 ACVIL 183

Small GTP-binding protein which cycles between a GDP-bound inactive and a GTP-bound active form. In its active form interacts with and regulates several effectors including MAP4K4, MINK1 and TNIK. Part of a signaling complex composed of NEDD4, RAP2A and TNIK which regulates neuronal dendrite extension and arborization during development. More generally, it is part of several signaling cascades and may regulate cytoskeletal rearrangements, cell migration, cell adhesion and cell spreading.

Sus scrofa (taxid: 9823)

>sp|Q8BU31|RAP2C_MOUSE Ras-related protein Rap-2c OS=Mus musculus GN=Rap2c PE=1 SV=1

 Score =  243 bits (620), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/186 (68%), Positives = 157/186 (84%), Gaps = 6/186 (3%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MRE+KVVVLGSGGVGKSALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  E+VP++LV NK+DL
Sbjct: 61  TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFN--PEKDNASFCW 279
              +REV + +G+ALAQ WGCPF+E SAK+K+ V+E+FAEIVR+MN++  PEK +     
Sbjct: 121 -EPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELFAEIVRQMNYSSLPEKQDQC--- 176

Query: 280 CSSCSI 285
           C++C +
Sbjct: 177 CTTCVV 182

Small GTP-binding protein which cycles between a GDP-bound inactive and a GTP-bound active form. May play a role in cytoskeletal rearrangements and regulate cell spreading through activation of the effector TNIK. May play a role in SRE-mediated gene transcription.

Mus musculus (taxid: 10090)

>sp|Q9Y3L5|RAP2C_HUMAN Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2C PE=1 SV=1

 Score =  243 bits (620), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/186 (68%), Positives = 157/186 (84%), Gaps = 6/186 (3%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MRE+KVVVLGSGGVGKSALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  E+VP++LV NK+DL
Sbjct: 61  TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFN--PEKDNASFCW 279
              +REV + +G+ALAQ WGCPF+E SAK+K+ V+E+FAEIVR+MN++  PEK +     
Sbjct: 121 -EPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELFAEIVRQMNYSSLPEKQDQC--- 176

Query: 280 CSSCSI 285
           C++C +
Sbjct: 177 CTTCVV 182

Small GTP-binding protein which cycles between a GDP-bound inactive and a GTP-bound active form. May play a role in cytoskeletal rearrangements and regulate cell spreading through activation of the effector TNIK. May play a role in SRE-mediated gene transcription.

Homo sapiens (taxid: 9606)

>sp|Q08DI5|RAP2C_BOVIN Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C PE=2 SV=1

 Score =  243 bits (620), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/186 (68%), Positives = 157/186 (84%), Gaps = 6/186 (3%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MRE+KVVVLGSGGVGKSALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  E+VP++LV NK+DL
Sbjct: 61  TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFN--PEKDNASFCW 279
              +REV + +G+ALAQ WGCPF+E SAK+K+ V+E+FAEIVR+MN++  PEK +     
Sbjct: 121 -EPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELFAEIVRQMNYSSLPEKQDQC--- 176

Query: 280 CSSCSI 285
           C++C +
Sbjct: 177 CTTCVV 182

Small GTP-binding protein which cycles between a GDP-bound inactive and a GTP-bound active form. May play a role in cytoskeletal rearrangements and regulate cell spreading through activation of the effector TNIK. May play a role in SRE-mediated gene transcription.

Bos taurus (taxid: 9913)

>sp|P10114|RAP2A_HUMAN Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2A PE=1 SV=1

 Score =  239 bits (609), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 127/184 (69%), Positives = 154/184 (83%), Gaps = 2/184 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MRE+KVVVLGSGGVGKSALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  E+VP++LV NK+DL
Sbjct: 61  TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
            S +    + +G+ALA+ WGCPF+E SAK+KT V+E+FAEIVR+MN+  + D    C CS
Sbjct: 121 ESEREVS-SSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNYAAQPDKDDPC-CS 178

Query: 282 SCSI 285
           +C+I
Sbjct: 179 ACNI 182

Small GTP-binding protein which cycles between a GDP-bound inactive and a GTP-bound active form. In its active form interacts with and regulates several effectors including MAP4K4, MINK1 and TNIK. Part of a signaling complex composed of NEDD4, RAP2A and TNIK which regulates neuronal dendrite extension and arborization during development. More generally, it is part of several signaling cascades and may regulate cytoskeletal rearrangements, cell migration, cell adhesion and cell spreading.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
345498179	181	PREDICTED: ras-related protein Rap-2c-li	0.625	0.988	0.877	5e-82
91092178	181	PREDICTED: similar to ras-related protei	0.625	0.988	0.872	2e-81
383860943	206	PREDICTED: ras-related protein Rap-2c-li	0.625	0.868	0.866	3e-81
307171468	181	Ras-related protein Rap-2a [Camponotus f	0.625	0.988	0.872	3e-81
328778195	181	PREDICTED: ras-related protein Rap-2c [A	0.625	0.988	0.861	5e-80
193697803	181	PREDICTED: ras-related protein Rap-2c-li	0.625	0.988	0.861	2e-79
357623527	181	ras-related protein 2 [Danaus plexippus]	0.625	0.988	0.861	3e-79
332376837	181	unknown [Dendroctonus ponderosae]	0.625	0.988	0.85	4e-78
114051712	180	ras-related protein 2 [Bombyx mori] gi|8	0.622	0.988	0.855	3e-77
321469662	194	hypothetical protein DAPPUDRAFT_318262 [	0.625	0.922	0.8	1e-74

>gi|345498179|ref|XP_003428169.1| PREDICTED: ras-related protein Rap-2c-like isoform 1 [Nasonia vitripennis] gi|345498181|ref|XP_003428170.1| PREDICTED: ras-related protein Rap-2c-like isoform 2 [Nasonia vitripennis]

 Score =  310 bits (794), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 158/180 (87%), Positives = 168/180 (93%), Gaps = 1/180 (0%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVD +PCVLEILDTAG
Sbjct: 1   MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGFVVVYSLTNH TFQDIK MKELITRVKG+ERVP+LLVANKLDL
Sbjct: 61  TEQFASMRDLYIKNGQGFVVVYSLTNHQTFQDIKAMKELITRVKGTERVPVLLVANKLDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
             HQREV T +G ALAQ WGCPF+EASAKN+TNVNE+FAEIVREMNF+PEK+  S+C CS
Sbjct: 121 -EHQREVDTAEGNALAQMWGCPFVEASAKNRTNVNEVFAEIVREMNFSPEKEKKSYCCCS 179

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092178|ref|XP_968474.1| PREDICTED: similar to ras-related protein 2 [Tribolium castaneum] gi|270014441|gb|EFA10889.1| hypothetical protein TcasGA2_TC001713 [Tribolium castaneum]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 157/180 (87%), Positives = 168/180 (93%), Gaps = 1/180 (0%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVD +PCVLEILDTAG
Sbjct: 1   MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGFVVVYSLTNH TFQDI+ MKELITRVKG+ERVPILLVANK+DL
Sbjct: 61  TEQFASMRDLYIKNGQGFVVVYSLTNHQTFQDIRSMKELITRVKGTERVPILLVANKVDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
             HQREV T +G +LAQ WGCPFIEASAKNKTNVNE+FAEIVREMNF+PEK+  S+C C+
Sbjct: 121 -DHQREVQTSEGNSLAQQWGCPFIEASAKNKTNVNEVFAEIVREMNFSPEKEKKSYCCCT 179

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860943|ref|XP_003705946.1| PREDICTED: ras-related protein Rap-2c-like [Megachile rotundata]

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 156/180 (86%), Positives = 167/180 (92%), Gaps = 1/180 (0%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVD +PCVLEILDTAG
Sbjct: 26  MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAG 85

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGFVVVYSLTNH TFQDIK MKELITRVKG+ERVP+LLVANKLDL
Sbjct: 86  TEQFASMRDLYIKNGQGFVVVYSLTNHQTFQDIKAMKELITRVKGTERVPVLLVANKLDL 145

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
             HQREV T +G ALA  WGCPF+EASAKN+TNVN++FAEIVREMNF+PEK+  S+C CS
Sbjct: 146 -EHQREVETAEGNALAHLWGCPFVEASAKNRTNVNDVFAEIVREMNFSPEKEKKSYCCCS 204

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171468|gb|EFN63312.1| Ras-related protein Rap-2a [Camponotus floridanus] gi|322795960|gb|EFZ18586.1| hypothetical protein SINV_09886 [Solenopsis invicta]

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 157/180 (87%), Positives = 167/180 (92%), Gaps = 1/180 (0%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVD +PCVLEILDTAG
Sbjct: 1   MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGFVVVYSLTNH TFQDIK MKELITRVKG+ERVP+LLVANKLDL
Sbjct: 61  TEQFASMRDLYIKNGQGFVVVYSLTNHQTFQDIKAMKELITRVKGTERVPVLLVANKLDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
             HQREV T +G  LAQ WGCPF+EASAKN+TNVNEMFAEIVREMNF+PEK+  ++C CS
Sbjct: 121 -EHQREVGTEEGHQLAQLWGCPFVEASAKNRTNVNEMFAEIVREMNFSPEKEKKTYCCCS 179

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778195|ref|XP_003249459.1| PREDICTED: ras-related protein Rap-2c [Apis mellifera] gi|350423908|ref|XP_003493627.1| PREDICTED: ras-related protein Rap-2c-like [Bombus impatiens] gi|380024312|ref|XP_003695945.1| PREDICTED: ras-related protein Rap-2c-like [Apis florea]

 Score =  303 bits (777), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 155/180 (86%), Positives = 167/180 (92%), Gaps = 1/180 (0%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVD +PCVLEILDTAG
Sbjct: 1   MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGFVVVYSLTNH TFQDIK MKELITRVKG+ERVP+LLVANKLDL
Sbjct: 61  TEQFASMRDLYIKNGQGFVVVYSLTNHQTFQDIKAMKELITRVKGTERVPVLLVANKLDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
             HQREV T +G ALAQ WGCPF+EASAK++TNVN++FAEIVREMN +PEK+  S+C CS
Sbjct: 121 -EHQREVDTAEGNALAQLWGCPFVEASAKHRTNVNDVFAEIVREMNVSPEKEKKSYCCCS 179

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193697803|ref|XP_001952010.1| PREDICTED: ras-related protein Rap-2c-like [Acyrthosiphon pisum]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/180 (86%), Positives = 167/180 (92%), Gaps = 1/180 (0%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MREFKVVVLGSGGVGKSALTVQFVSG FMEKYDPTIEDFYRKEIEVD +PCVLEILDTAG
Sbjct: 1   MREFKVVVLGSGGVGKSALTVQFVSGRFMEKYDPTIEDFYRKEIEVDSSPCVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGFVVVYSLTNH TFQDIK MKELITRVKGSERVPILLVANK+DL
Sbjct: 61  TEQFASMRDLYIKNGQGFVVVYSLTNHQTFQDIKPMKELITRVKGSERVPILLVANKIDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
             HQREVPT++G  LAQ WGCPF+EASAKN+TNVNE+FAEIVREMNF+ +K+  S+C C+
Sbjct: 121 -EHQREVPTIEGNTLAQIWGCPFVEASAKNRTNVNEVFAEIVREMNFSNDKEKKSYCCCT 179

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623527|gb|EHJ74637.1| ras-related protein 2 [Danaus plexippus]

 Score =  301 bits (770), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 155/180 (86%), Positives = 163/180 (90%), Gaps = 1/180 (0%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVD +PCVLEILDTAG
Sbjct: 1   MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGFVVVYSLTNH TFQDIK MKELITRVKGSERVPILLV NK DL
Sbjct: 61  TEQFASMRDLYIKNGQGFVVVYSLTNHQTFQDIKPMKELITRVKGSERVPILLVGNKADL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
             HQREV   +G ALAQ WGCPF+EASAK++TNVNEMFAEIVREMN +PEKD   +C C+
Sbjct: 121 -DHQREVSQTEGSALAQMWGCPFVEASAKSRTNVNEMFAEIVREMNVSPEKDKRPYCCCT 179

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376837|gb|AEE63558.1| unknown [Dendroctonus ponderosae]

 Score =  297 bits (760), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 153/180 (85%), Positives = 165/180 (91%), Gaps = 1/180 (0%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVD +PCVLEILDTAG
Sbjct: 1   MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGFVVVYSLTNH TFQDI+ MKELITRVKG ERVPILLVANK+DL
Sbjct: 61  TEQFASMRDLYIKNGQGFVVVYSLTNHQTFQDIRPMKELITRVKGIERVPILLVANKVDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
             HQREV   +G+ L+Q WGCPFIEASAKN+TNVNE+FAEIVREMN +PEK+  S+C C+
Sbjct: 121 -DHQREVDFEEGKTLSQQWGCPFIEASAKNRTNVNEVFAEIVREMNVSPEKEKRSYCCCT 179

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114051712|ref|NP_001040327.1| ras-related protein 2 [Bombyx mori] gi|87248589|gb|ABD36347.1| ras-related protein 2 [Bombyx mori]

 Score =  294 bits (753), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 154/180 (85%), Positives = 163/180 (90%), Gaps = 2/180 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVD +PCVLEILDTAG
Sbjct: 1   MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGFVVVYSLTNH TFQDIK MKELITRVKGSERVPILLV NK DL
Sbjct: 61  TEQFASMRDLYIKNGQGFVVVYSLTNHQTFQDIKPMKELITRVKGSERVPILLVGNKADL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
             HQREV   +G ALAQ WGCPF+EASAK++TNVNEMFAEIVREMN +PEK+   +C C+
Sbjct: 121 -EHQREVAHAEGAALAQMWGCPFVEASAKSRTNVNEMFAEIVREMNVSPEKEK-PYCCCT 178

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321469662|gb|EFX80641.1| hypothetical protein DAPPUDRAFT_318262 [Daphnia pulex]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 144/180 (80%), Positives = 162/180 (90%), Gaps = 1/180 (0%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MREFKVVVLGSGGVGKSALTVQFV+GCFMEKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct: 14  MREFKVVVLGSGGVGKSALTVQFVTGCFMEKYDPTIEDFYRKEIEVDGSPSVLEILDTAG 73

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYI+NGQGFV+VYS+TNH TFQDIK M+E ITRVKG++RVP+LLV NK+DL
Sbjct: 74  TEQFASMRDLYIRNGQGFVIVYSITNHQTFQDIKTMREQITRVKGTDRVPLLLVGNKVDL 133

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
             HQREV T++G ALAQ+W CPFIEASA+NK NVNE+FAEIVREMN NP K+   +C C+
Sbjct: 134 -EHQREVATMEGLALAQAWNCPFIEASARNKMNVNEVFAEIVREMNCNPAKEKRPYCCCN 192

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
FB|FBgn0025806	182	Rap2l "Ras-associated protein	0.625	0.983	0.701	5.4e-63
UNIPROTKB|P10114	183	RAP2A "Ras-related protein Rap	0.636	0.994	0.635	1.9e-58
UNIPROTKB|E1BNQ3	183	RAP2A "Uncharacterized protein	0.636	0.994	0.635	2.5e-58
UNIPROTKB|Q5R988	183	RAP2A "Ras-related protein Rap	0.636	0.994	0.635	2.5e-58
MGI|MGI:97855	183	Rap2a "RAS related protein 2a"	0.636	0.994	0.635	2.5e-58
UNIPROTKB|G3V980	183	Rap2a "RCG36946" [Rattus norve	0.636	0.994	0.635	2.5e-58
WB|WBGene00004308	181	rap-2 [Caenorhabditis elegans	0.625	0.988	0.683	4e-58
UNIPROTKB|E1BQI2	183	RAP2A "Uncharacterized protein	0.636	0.994	0.630	6.6e-58
UNIPROTKB|F1P072	195	RAP2C "Uncharacterized protein	0.629	0.923	0.634	2.8e-57
UNIPROTKB|A4IFU2	183	RAP2B "RAP2B protein" [Bos tau	0.639	1.0	0.627	5.9e-57

FB|FBgn0025806 Rap2l "Ras-associated protein 2-like" [Drosophila melanogaster (taxid:7227)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 127/181 (70%), Positives = 141/181 (77%)

Query:   102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
             MREF             ALTVQFVSGCF+EKYDPTIEDFYRKEIEVD +PCVLEILDTAG
Sbjct:     1 MREFKVVVLGSGGVGKSALTVQFVSGCFIEKYDPTIEDFYRKEIEVDSSPCVLEILDTAG 60

Query:   162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
             TEQFASMRDLYIKNG GF+V+YSLTNH TFQDI  MK +ITRVKGS+  PILLVANK DL
Sbjct:    61 TEQFASMRDLYIKNGHGFIVMYSLTNHQTFQDISSMKNVITRVKGSQPAPILLVANKFDL 120

Query:   222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPE-KDNASFCWC 280
                QREV T +G ALAQ W CPFIEASAK++ NVNE+FA IVREMN   E +   ++C C
Sbjct:   121 DC-QREVSTAEGNALAQLWDCPFIEASAKDRINVNEVFATIVREMNLTQENRQKKNYCCC 179

Query:   281 S 281
             +
Sbjct:   180 T 180

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030718 "germ-line stem cell maintenance" evidence=IGI

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|P10114 RAP2A "Ras-related protein Rap-2a" [Homo sapiens (taxid:9606)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 117/184 (63%), Positives = 144/184 (78%)

Query:   102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
             MRE+             ALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct:     1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query:   162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
             TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  E+VP++LV NK+DL
Sbjct:    61 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120

Query:   222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
              S +REV + +G+ALA+ WGCPF+E SAK+KT V+E+FAEIVR+MN+  + D    C CS
Sbjct:   121 ES-EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNYAAQPDKDDPC-CS 178

Query:   282 SCSI 285
             +C+I
Sbjct:   179 ACNI 182

GO:0005525 "GTP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030336 "negative regulation of cell migration" evidence=IEA

GO:0031532 "actin cytoskeleton reorganization" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

GO:0031954 "positive regulation of protein autophosphorylation" evidence=IDA

GO:0046328 "regulation of JNK cascade" evidence=IDA

GO:0048814 "regulation of dendrite morphogenesis" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0055038 "recycling endosome membrane" evidence=IDA

GO:0032486 "Rap protein signal transduction" evidence=ISS

GO:0045184 "establishment of protein localization" evidence=IDA

GO:0055037 "recycling endosome" evidence=IDA

UNIPROTKB|E1BNQ3 RAP2A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 117/184 (63%), Positives = 144/184 (78%)

Query:   102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
             MRE+             ALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct:     1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query:   162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
             TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  E+VP++LV NK+DL
Sbjct:    61 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120

Query:   222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
              S +REV + +G+ALA+ WGCPF+E SAK+KT V+E+FAEIVR+MN+  + D    C CS
Sbjct:   121 ES-EREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNYAAQPDKDDPC-CS 178

Query:   282 SCSI 285
             +C+I
Sbjct:   179 ACNI 182

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0048814 "regulation of dendrite morphogenesis" evidence=IEA

GO:0046328 "regulation of JNK cascade" evidence=IEA

GO:0045184 "establishment of protein localization" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

GO:0032486 "Rap protein signal transduction" evidence=IEA

GO:0031954 "positive regulation of protein autophosphorylation" evidence=IEA

GO:0031532 "actin cytoskeleton reorganization" evidence=IEA

GO:0030336 "negative regulation of cell migration" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q5R988 RAP2A "Ras-related protein Rap-2a" [Pongo abelii (taxid:9601)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 117/184 (63%), Positives = 144/184 (78%)

Query:   102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
             MRE+             ALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct:     1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query:   162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
             TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  E+VP++LV NK+DL
Sbjct:    61 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120

Query:   222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
              S +REV + +G+ALA+ WGCPF+E SAK+KT V+E+FAEIVR+MN+  + D    C CS
Sbjct:   121 ES-EREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNYAAQPDKDDPC-CS 178

Query:   282 SCSI 285
             +C+I
Sbjct:   179 ACNI 182

GO:0003924 "GTPase activity" evidence=ISS

GO:0031532 "actin cytoskeleton reorganization" evidence=ISS

GO:0031954 "positive regulation of protein autophosphorylation" evidence=ISS

GO:0032486 "Rap protein signal transduction" evidence=ISS

GO:0034613 "cellular protein localization" evidence=ISS

GO:0046328 "regulation of JNK cascade" evidence=ISS

GO:0048814 "regulation of dendrite morphogenesis" evidence=ISS

GO:0055038 "recycling endosome membrane" evidence=ISS

MGI|MGI:97855 Rap2a "RAS related protein 2a" [Mus musculus (taxid:10090)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 117/184 (63%), Positives = 144/184 (78%)

Query:   102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
             MRE+             ALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct:     1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query:   162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
             TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  E+VP++LV NK+DL
Sbjct:    61 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120

Query:   222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
              S +REV + +G+ALA+ WGCPF+E SAK+KT V+E+FAEIVR+MN+  + D    C CS
Sbjct:   121 ES-EREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNYAAQPDKDDPC-CS 178

Query:   282 SCSI 285
             +C+I
Sbjct:   179 ACNI 182

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0030336 "negative regulation of cell migration" evidence=IDA

GO:0031532 "actin cytoskeleton reorganization" evidence=ISO

GO:0031954 "positive regulation of protein autophosphorylation" evidence=ISO;IDA

GO:0032486 "Rap protein signal transduction" evidence=IDA

GO:0034613 "cellular protein localization" evidence=ISO

GO:0045184 "establishment of protein localization" evidence=ISO

GO:0046328 "regulation of JNK cascade" evidence=ISO

GO:0048814 "regulation of dendrite morphogenesis" evidence=ISO

GO:0055037 "recycling endosome" evidence=ISO;IDA

GO:0055038 "recycling endosome membrane" evidence=ISO;IDA

UNIPROTKB|G3V980 Rap2a "RCG36946" [Rattus norvegicus (taxid:10116)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 117/184 (63%), Positives = 144/184 (78%)

Query:   102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
             MRE+             ALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct:     1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query:   162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
             TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  E+VP++LV NK+DL
Sbjct:    61 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120

Query:   222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
              S +REV + +G+ALA+ WGCPF+E SAK+KT V+E+FAEIVR+MN+  + D    C CS
Sbjct:   121 ES-EREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNYAAQPDKDDPC-CS 178

Query:   282 SCSI 285
             +C+I
Sbjct:   179 ACNI 182

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

WB|WBGene00004308 rap-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 123/180 (68%), Positives = 133/180 (73%)

Query:   102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
             MREF             ALTVQFVS  F+EKYDPTIEDFYRKEIEVD  P VLEILDTAG
Sbjct:     1 MREFKVVVLGSGGVGKSALTVQFVSSTFIEKYDPTIEDFYRKEIEVDGQPSVLEILDTAG 60

Query:   162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
             TEQF+SMRDLYIKNGQGFVVVYS+T+  TF DI+ MKE I RVKGSE VPILLV NK DL
Sbjct:    61 TEQFSSMRDLYIKNGQGFVVVYSITSQQTFHDIRNMKEQIVRVKGSENVPILLVGNKCDL 120

Query:   222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
              SHQR+V + +G ALA+SW CPF E SAKN  NVN  FAEIVREMN+   K   S   CS
Sbjct:   121 -SHQRQVRSEEGLALAESWSCPFTECSAKNNQNVNVTFAEIVREMNYVQNKSRQSKSCCS 179

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0040002 "collagen and cuticulin-based cuticle development" evidence=IGI

GO:0008544 "epidermis development" evidence=IGI

UNIPROTKB|E1BQI2 RAP2A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 116/184 (63%), Positives = 144/184 (78%)

Query:   102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
             MRE+             ALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct:     1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDASPSVLEILDTAG 60

Query:   162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
             TEQFASMRDLYIKNGQGF++VYSL N  +FQDI+ M++ I RVK  E+VP++LV NK+DL
Sbjct:    61 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIRPMRDQIIRVKRYEKVPVILVGNKVDL 120

Query:   222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
              S +REV + +G+ALA+ WGCPF+E SAK+KT V+E+FAEIVR+MN+  + D    C CS
Sbjct:   121 ES-EREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNYAAQPDKDDPC-CS 178

Query:   282 SCSI 285
             +C+I
Sbjct:   179 ACNI 182

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030336 "negative regulation of cell migration" evidence=IEA

GO:0031532 "actin cytoskeleton reorganization" evidence=IEA

GO:0031954 "positive regulation of protein autophosphorylation" evidence=IEA

GO:0032486 "Rap protein signal transduction" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

GO:0045184 "establishment of protein localization" evidence=IEA

GO:0046328 "regulation of JNK cascade" evidence=IEA

GO:0048814 "regulation of dendrite morphogenesis" evidence=IEA

GO:0055038 "recycling endosome membrane" evidence=IEA

UNIPROTKB|F1P072 RAP2C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 118/186 (63%), Positives = 144/186 (77%)

Query:   102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
             MRE+             ALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct:    13 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 72

Query:   162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
             TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  E+VP++LV NK+DL
Sbjct:    73 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDL 132

Query:   222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFN--PEKDNASFCW 279
              S +REV   +G+ALAQ WGCPF+E SAK+KT V+E+FAEIVR+MN+   PEK +   C 
Sbjct:   133 ES-EREVLVAEGRALAQEWGCPFMETSAKSKTMVDELFAEIVRQMNYASLPEKQDQ--C- 188

Query:   280 CSSCSI 285
             C++C +
Sbjct:   189 CTTCIV 194

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|A4IFU2 RAP2B "RAP2B protein" [Bos taurus (taxid:9913)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 116/185 (62%), Positives = 141/185 (76%)

Query:   102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
             MRE+             ALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct:     1 MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query:   162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
             TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  ERVP++LV NK+DL
Sbjct:    61 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDL 120

Query:   222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCS 281
                +REV   +G+ALA+ W CPF+E SAKNK +V+E+FAEIVR+MN+  + +    C CS
Sbjct:   121 EG-EREVSFGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGC-CS 178

Query:   282 SCSIL 286
             +C IL
Sbjct:   179 ACVIL 183

GO:0061097 "regulation of protein tyrosine kinase activity" evidence=IEA

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0032486 "Rap protein signal transduction" evidence=IEA

GO:0031954 "positive regulation of protein autophosphorylation" evidence=IEA

GO:0030336 "negative regulation of cell migration" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q06AU2	RAP2A_PIG	No assigned EC number	0.6972	0.6398	1.0	yes	N/A
P18613	RAPA_DICDI	No assigned EC number	0.6227	0.5769	0.8870	yes	N/A
Q5R988	RAP2A_PONAB	No assigned EC number	0.7065	0.6363	0.9945	yes	N/A
P61227	RAP2B_RAT	No assigned EC number	0.6972	0.6398	1.0	yes	N/A
P61225	RAP2B_HUMAN	No assigned EC number	0.6972	0.6398	1.0	yes	N/A
Q80ZJ1	RAP2A_MOUSE	No assigned EC number	0.7065	0.6363	0.9945	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	286
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-108
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	4e-95
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-92
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	4e-88
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-87
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	9e-81
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	1e-72
pfam00071	162	pfam00071, Ras, Ras family	3e-70
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	5e-69
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	4e-66
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	4e-65
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	2e-63
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-62
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-60
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-52
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	4e-51
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	4e-51
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	5e-51
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-45
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-42
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	4e-42
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-37
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-36
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	4e-36
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	8e-36
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-35
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-34
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	7e-33
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	6e-32
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-31
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	7e-31
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-29
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-29
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	4e-28
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	7e-28
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	7e-28
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-27
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-27
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	3e-27
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-27
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	4e-27
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-26
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-26
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-25
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	3e-25
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-24
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	3e-24
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	5e-24
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	7e-24
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-23
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	3e-23
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	6e-23
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-22
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-22
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-22
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	5e-22
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	5e-22
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	2e-21
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	6e-21
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	2e-20
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	3e-19
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	6e-19
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-18
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	4e-18
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	4e-18
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	9e-18
pfam08477	116	pfam08477, Miro, Miro-like protein	1e-17
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-17
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-17
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	3e-17
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	5e-17
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-16
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-15
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	2e-15
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-15
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	9e-15
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-14
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	1e-13
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	6e-13
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-12
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-10
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	7e-10
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	2e-09
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	3e-09
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	5e-09
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-07
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	1e-06
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	1e-06
cd00880	161	cd00880, Era_like, E	6e-06
pfam02421	190	pfam02421, FeoB_N, Ferrous iron transport protein	2e-05
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	2e-04
cd01879	159	cd01879, FeoB, Ferrous iron transport protein B (F	3e-04
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	0.001
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	0.002
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	0.002
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	0.002
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	0.003
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	0.003
COG0532	509	COG0532, InfB, Translation initiation factor 2 (IF	0.004

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  309 bits (793), Expect = e-108
 Identities = 127/164 (77%), Positives = 145/164 (88%), Gaps = 1/164 (0%)

Query: 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163
           E+KVVVLGSGGVGKSALTVQFVSG F+EKYDPTIEDFYRKEIEVD +P VLEILDTAGTE
Sbjct: 1   EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           QFASMRDLYIKNGQGF+VVYSL N  TFQDIK M++ I RVKG E+VPI+LV NK+DL  
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE- 119

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
            +REV + +G+ALA+ WGCPF+E SAK+KT VNE+FAEIVR+MN
Sbjct: 120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQMN 163

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  277 bits (710), Expect = 4e-95
 Identities = 93/165 (56%), Positives = 131/165 (79%), Gaps = 1/165 (0%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
           RE+K+VVLG GGVGKSALT+QFV G F+++YDPTIED YRK+IE+D   C+L+ILDTAG 
Sbjct: 1   REYKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQ 60

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
           E+F++MRD Y++ G+GF++VYS+T+  +F++I + +E I RVK  + VPI+LV NK DL 
Sbjct: 61  EEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDL- 119

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
            ++R V T +G+ LA+ WGCPF+E SAK + NV+E F ++VRE+ 
Sbjct: 120 ENERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREIR 164

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  270 bits (692), Expect = 2e-92
 Identities = 92/163 (56%), Positives = 129/163 (79%), Gaps = 1/163 (0%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164
           +K+VVLGSGGVGKSALT+QF+ G F++ YDPTIED YRK+IE+D   C+L+ILDTAG E+
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE 60

Query: 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH 224
           F++MRD Y++ G+GF++VYS+T+  +F++IK+ +E I RVK  + VPI+LV NK DL   
Sbjct: 61  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDL-ES 119

Query: 225 QREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           +R V T +G+ LA+ WGCPF+E SAK + NV+E F ++VRE+ 
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  259 bits (663), Expect = 4e-88
 Identities = 105/165 (63%), Positives = 133/165 (80%), Gaps = 2/165 (1%)

Query: 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163
           E+K+VVLGSGGVGKSALTVQFV G F++KYDPTIED YRK+IEVD   C+LEILDTAGTE
Sbjct: 1   EYKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           QF +MRDLYIKNGQGF +VYS+T   +F D++ ++E I RVK +E VP++LV NK DL  
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 224 HQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVREMN 267
            +R V   +GQ LA+ WG CPF+E SAK+K NV+E+F ++VR++N
Sbjct: 121 -ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQIN 164

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  257 bits (660), Expect = 1e-87
 Identities = 95/161 (59%), Positives = 129/161 (80%), Gaps = 1/161 (0%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           K+VVLG+GGVGKSALT++FVSG F+E+YDPTIED YRK+I VD     L+ILDTAG E+F
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEF 60

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ 225
           ++MRD YI+NG GF++VYS+T+  +F++IK ++E I RVK  E VPI+LV NK DL  ++
Sbjct: 61  SAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDL-ENE 119

Query: 226 REVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           R+V T +G+ALA+ WGCPF+E SAK   N++E+F  +VRE+
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  240 bits (615), Expect = 9e-81
 Identities = 106/164 (64%), Positives = 131/164 (79%), Gaps = 1/164 (0%)

Query: 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163
           E+K+VVLGSGGVGKSALTVQFV G F+EKYDPTIED YRK++EVD   C+LEILDTAGTE
Sbjct: 1   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 60

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           QF +MRDLY+KNGQGFV+VYS+T   TF D++ ++E I RVK +E VP++LV NK DL  
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
            +R V    GQ LA+ WGC F+E SAK K NVNE+F ++VR++N
Sbjct: 121 -ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN 163

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  220 bits (561), Expect = 1e-72
 Identities = 91/164 (55%), Positives = 128/164 (78%), Gaps = 2/164 (1%)

Query: 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163
           ++K+VVLG+GGVGKSALTVQFV   F+E YDPTIED YRK++E+D   C LEILDTAGTE
Sbjct: 1   DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTE 60

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           QF +MR+LYIK+GQGF++VYS+T+  +  ++ +++E + R+K S+ VP++LV NK DL  
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 224 HQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVREM 266
             R+V   DG +L+Q WG  PF E SA+ +TNV+E+F ++VR++
Sbjct: 121 -DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  213 bits (546), Expect = 3e-70
 Identities = 79/162 (48%), Positives = 107/162 (66%), Gaps = 3/162 (1%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQ 164
           K+V++G GGVGKS+L ++F    F E+Y PTI  DFY K IEVD     L+I DTAG E+
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH 224
           F ++R LY +  QGF++VY +T+  +F+++K+  E I R    E VPI+LV NK DL   
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHAD-ENVPIVLVGNKCDLE-D 118

Query: 225 QREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           QR V T +G+ALA+  G PF+E SAK   NV E F E+ RE+
Sbjct: 119 QRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREI 160

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  210 bits (537), Expect = 5e-69
 Identities = 83/163 (50%), Positives = 122/163 (74%), Gaps = 2/163 (1%)

Query: 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163
           E+K+VV+G+GGVGKSALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E
Sbjct: 1   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 60

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           ++++MRD Y++ G+GF+ V+++ +  +F+DI   +E I RVK S+ VP++LV NK DLA+
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             R V T  GQ LA+S+G P+IE SAK +  V E F  +VRE+
Sbjct: 121 --RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  204 bits (521), Expect = 4e-66
 Identities = 88/165 (53%), Positives = 127/165 (76%), Gaps = 1/165 (0%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
             E+K+VV+G GGVGKSALT+QF+   F+++YDPTIED YRK+  +D+  C+L+ILDTAG
Sbjct: 3   STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAG 62

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
            E++++MRD Y++ GQGF+ VYS+T+  +F++I   +E I RVK  +RVP++LV NK DL
Sbjct: 63  QEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDL 122

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
              +R+V T +GQ LA+S+G PF+E SAK + NV+E F E+VRE+
Sbjct: 123 -DSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI 166

Length = 189

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  201 bits (512), Expect = 4e-65
 Identities = 76/160 (47%), Positives = 115/160 (71%), Gaps = 1/160 (0%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164
           +K+VV+G GGVGKSALT+QF+   F+  YDPTIED Y K+ E+D     L+ILDTAG E+
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQEE 62

Query: 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH 224
           F++MR+ Y++ G+GF++V+S+T+  +F+++ +    I RVK  +  P++LV NK DL  H
Sbjct: 63  FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL-EH 121

Query: 225 QREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264
           QR+V   +GQ LA+    P+IE SAK++ NV++ F ++VR
Sbjct: 122 QRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVR 161

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  197 bits (503), Expect = 2e-63
 Identities = 84/163 (51%), Positives = 117/163 (71%), Gaps = 3/163 (1%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           K+VVLG GGVGK+ALT+Q     F+E YDPTIED YRK++ VD  PC+LE+LDTAG E++
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY 60

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVK--GSERVPILLVANKLDLAS 223
            ++RD +I+ G+GF++VYS+T+  TF+ +++ +E I RVK   +  VPI++V NK D   
Sbjct: 61  TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDK-V 119

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           ++REV T +G ALA+  GC FIEASAK   NV   F  +VR +
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  194 bits (495), Expect = 1e-62
 Identities = 80/164 (48%), Positives = 123/164 (75%), Gaps = 1/164 (0%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
           RE+K+V+LG+GGVGKSA+T+QF+S  F + +DPTIED Y+ +  +D  P +L+ILDTAG 
Sbjct: 1   REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQ 60

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
            +F +MRD Y++ G+GF++ YS+T+ H+FQ+  + KELITRV+ +E +P++LV NK+DL 
Sbjct: 61  AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLE 120

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             QR+V T +G+ LA+ + CPF E SA  +  +++ F  +VRE+
Sbjct: 121 Q-QRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREI 163

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  189 bits (481), Expect = 2e-60
 Identities = 74/162 (45%), Positives = 114/162 (70%), Gaps = 1/162 (0%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164
            KV+++GSGGVGKSALT+QF+   F+E Y+PT  D YRK++ +D     L ILDTAG E 
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQED 60

Query: 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH 224
           +A++RD Y ++G+GF++V+S+T+  +F  + + +E I RVK  + VP+LLV NK DL   
Sbjct: 61  YAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDL-ED 119

Query: 225 QREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           +R+V   +   LA+ WG  ++E SAK + NV+++F ++VRE+
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  168 bits (429), Expect = 1e-52
 Identities = 65/162 (40%), Positives = 94/162 (58%), Gaps = 5/162 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FK+V++G  GVGK++L ++FV   F E Y  TI  DF  K IEVD     L+I DTAG E
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F S+   Y +   G ++VY +TN  +F+++ + + EL  +      +PI+LV NK DL 
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNEL--KEYAPPNIPIILVGNKSDLE 118

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264
             +R+V T + Q  A+  G  F E SAK   NV+E F  + R
Sbjct: 119 D-ERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  165 bits (420), Expect = 4e-51
 Identities = 72/177 (40%), Positives = 105/177 (59%), Gaps = 4/177 (2%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           K+ VLGS  VGKS+LTVQFV G F+E Y PTIE+ + K I        LEI+DTAG +++
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEY 62

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ 225
           + +   Y     G+++VYS+T+  +F+ +K + + I  + G E VPI+LV NK DL   +
Sbjct: 63  SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDL-HME 121

Query: 226 REVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM---NFNPEKDNASFCW 279
           R+V   +G+ LA+SWG  F+E+SAK   NV E F  ++ E+            S C 
Sbjct: 122 RQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEIEKVENPLPPGQKSKCS 178

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  164 bits (419), Expect = 4e-51
 Identities = 72/164 (43%), Positives = 99/164 (60%), Gaps = 5/164 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK++++G  GVGKS+L  +F  G F E+Y  TI  DF  K IEVD     L+I DTAG E
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F S+   Y +   G ++VY +TN  +F++++  +KEL  R   S  V I+LV NK DL 
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKEL--REYASPNVVIMLVGNKSDLE 118

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             QR+V   + +A A+  G PF E SAK  TNV E F E+ RE+
Sbjct: 119 -EQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score =  165 bits (418), Expect = 5e-51
 Identities = 77/162 (47%), Positives = 112/162 (69%), Gaps = 3/162 (1%)

Query: 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163
           +++VVV G+GGVGKS+L ++FV G F E Y PTIED YR+ I   K+ C L+I DT G+ 
Sbjct: 1   DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSH 60

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGS--ERVPILLVANKLDL 221
           QF +M+ L I  G  F++VYS+T+  + +++K + ELI  +KG+  E++PI+LV NK D 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCD- 119

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263
            S  REV + +G ALA++W C F+E SAK   NV E+F E++
Sbjct: 120 ESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELL 161

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  150 bits (381), Expect = 2e-45
 Identities = 67/164 (40%), Positives = 99/164 (60%), Gaps = 5/164 (3%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           K+ VLG+ GVGKSALTV+F++  F+ +Y+P +E  Y +++ +D     LEI DT G +Q 
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQN 60

Query: 166 ASMRDL--YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLDLA 222
                L   ++   GFV+VYS+T+  +F  + Q+ +LI  +K     +P++LV NK DL 
Sbjct: 61  EDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADLL 120

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASA-KNKTNVNEMFAEIVRE 265
            H R+V T +GQ LA   GC F E SA +N   V  +F E+ RE
Sbjct: 121 -HSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCRE 163

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score =  144 bits (364), Expect = 2e-42
 Identities = 62/163 (38%), Positives = 105/163 (64%), Gaps = 2/163 (1%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           ++V +G+ GVGK+AL  +F+   F  K+  T+E+ + KE EV      ++ILDT+G+  F
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ 225
            +MR L I+NG  F +VYS+ +  +F+++K+++E I  VK  + VPI++V NK+D  + +
Sbjct: 61  PAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLA-E 119

Query: 226 REVPTLDGQALAQ-SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           R+V   D  +  +  W   F+EASAK+  NV E+F E++++ N
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQAN 162

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  141 bits (359), Expect = 4e-42
 Identities = 62/165 (37%), Positives = 93/165 (56%), Gaps = 5/165 (3%)

Query: 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGT 162
           +FK+V+LG   VGKS++ ++FV   F E  + TI   F  + + +D      EI DTAG 
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDL 221
           E++ S+  +Y +     +VVY +T+  +F+  K  +KEL  +  G   + I L  NK DL
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKEL--QEHGPPNIVIALAGNKADL 118

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
            S +R+V T + Q  A   G  F+E SAK   NVNE+F EI R++
Sbjct: 119 ES-KRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  130 bits (328), Expect = 1e-37
 Identities = 59/162 (36%), Positives = 86/162 (53%), Gaps = 5/162 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
            K++++G  GVGKS+L ++F    F E    TI  DF  K + VD     L I DTAG E
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F ++   Y +  QG ++VY +T   TF ++   + EL T     + V  +LV NK+D  
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAV-KMLVGNKIDKE 119

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264
           +  REV   +GQ  A+     FIE SAK +  V + F E+V 
Sbjct: 120 N--REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVE 159

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score =  129 bits (327), Expect = 1e-36
 Identities = 57/167 (34%), Positives = 95/167 (56%), Gaps = 2/167 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFME-KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163
           ++VV+LG  GVGKS+L   F +G + +  Y+ + +D Y + + VD     L + D    E
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
               + D  ++ G  +V+VYS+T+  +F+   +++  + R + +E +PI+LV NK DL  
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNP 270
             REV   +G+A A  + C FIE SA  + NV+E+F  IVR++    
Sbjct: 121 S-REVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQVRLRR 166

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  126 bits (319), Expect = 4e-36
 Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK++++G  GVGKS L ++F    F   +  TI  DF  + IE+D     L+I DTAG E
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F ++   Y +   G ++VY +T+  +F++IK  M+ +      SE V  +LV NK D+ 
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNI--DEHASEDVERMLVGNKCDME 121

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             +R V   +G+ALA+ +G  F+E SAK   NV E F  + +++
Sbjct: 122 -EKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  125 bits (317), Expect = 8e-36
 Identities = 64/163 (39%), Positives = 93/163 (57%), Gaps = 3/163 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK++++G  GVGKS L ++F    + E Y  TI  DF  + IE+D     L+I DTAG E
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           +F ++   Y +   G ++VY +T+  +F ++KQ  + I R   SE V  LLV NK DL  
Sbjct: 63  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTD 121

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
            ++ V   + +  A   G PF+E SAKN TNV E F  + RE+
Sbjct: 122 -KKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  124 bits (314), Expect = 2e-35
 Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 3/159 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
            K+V LG   VGK+++  +F+   F  +Y  TI  DF  K + VD     L++ DTAG E
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           +F S+   YI++    VVVY +TN  +F +  +  + +   +G++ V I+LV NK DL+ 
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGND-VIIVLVGNKTDLSD 119

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262
            +R+V T +G+  A+     FIE SAK   NV ++F +I
Sbjct: 120 -KRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKI 157

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  122 bits (308), Expect = 1e-34
 Identities = 52/163 (31%), Positives = 96/163 (58%), Gaps = 3/163 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FYRKEIEVDKAPCVLEILDTAGTE 163
           FKVV+LG G VGK++L +++V   F EK++ T +  F++K + +      L I DTAG E
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           ++ ++  +Y ++  G ++VY +T+  +FQ +K+  + + +++G   + +++V NK+DL  
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLER 119

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
            QR V   + +  A+S G    E SAK    + E+F  + + M
Sbjct: 120 -QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score =  120 bits (303), Expect = 7e-33
 Identities = 59/164 (35%), Positives = 96/164 (58%), Gaps = 10/164 (6%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164
           +++VVLG+  VGK+A+  +F+ G F E+Y PTIEDF+RK   +      L+ILDT+G   
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP 60

Query: 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELI--------TRVKGSERVPILLVA 216
           F +MR L I  G  F++V+SL N  +F+++ +++E I         + K + ++P+++  
Sbjct: 61  FPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICG 120

Query: 217 NKLDLASHQREVPTLD-GQALAQSWGCPFIEASAKNKTNVNEMF 259
           NK D     REV   +  Q +     C + E SAK  +N++EMF
Sbjct: 121 NKADRDFP-REVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMF 163

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  115 bits (291), Expect = 6e-32
 Identities = 62/167 (37%), Positives = 93/167 (55%), Gaps = 13/167 (7%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD----KAPCVLEILDT 159
           FK+V++G  GVGKS L  +F    F      TI  +F  + I++D    KA    +I DT
Sbjct: 4   FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKA----QIWDT 59

Query: 160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANK 218
           AG E++ ++   Y +   G ++VY +T   TF+++ + +KEL  R      + I+LV NK
Sbjct: 60  AGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKEL--RDHADSNIVIMLVGNK 117

Query: 219 LDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
            DL  H R VPT + +A A+  G  FIE SA + TNV E F +++ E
Sbjct: 118 SDLR-HLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTE 163

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  116 bits (291), Expect = 2e-31
 Identities = 57/165 (34%), Positives = 97/165 (58%), Gaps = 5/165 (3%)

Query: 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCV-LEILDTAG 161
           +F+++V+G   VGKS+L  +F  G F E  DPT+  DF+ + IE++    + L++ DTAG
Sbjct: 2   QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAG 61

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLD 220
            E+F S+   Y +N  G ++V+ +TN  +F+ +   ++E  + ++    V  +LV +K D
Sbjct: 62  QERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPV-FILVGHKCD 120

Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
           L S QR+V   + + LA+  G  +IE SA+   NV E F  + +E
Sbjct: 121 LES-QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQE 164

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  113 bits (284), Expect = 7e-31
 Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 16/172 (9%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           K+VV+G G VGK+ L + + +  F  +Y PT+ D Y   + VD     L + DTAG E++
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEEY 61

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQM--KELITRVKGSERVPILLVANKLDL-- 221
             +R L       F++ +S+ +  +F+++K     E+         VPI+LV  K+DL  
Sbjct: 62  DRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIK---HYCPNVPIILVGTKIDLRD 118

Query: 222 --------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
                      Q+ +   +G+ LA+  G   ++E SA  +  + E+F E +R
Sbjct: 119 DGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  109 bits (274), Expect = 1e-29
 Identities = 61/166 (36%), Positives = 95/166 (57%), Gaps = 7/166 (4%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
            KV++LG GGVGKS+L  ++V+  F  +   TI  +F  K++EVD     L+I DTAG E
Sbjct: 6   LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMK-ELI--TRVKGSERVPILLVANKLD 220
           +F S+R  + +     ++ +S+ +  +FQ++   K E I    VK  E  P +++ NK+D
Sbjct: 66  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 125

Query: 221 LASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVRE 265
           +   +R+V T + QA  +  G  P+ E SAK+ TNV   F E VR 
Sbjct: 126 IP--ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 169

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  108 bits (273), Expect = 3e-29
 Identities = 62/172 (36%), Positives = 90/172 (52%), Gaps = 20/172 (11%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
            KV++LG  GVGK++L  Q+V+  F  +Y  TI  DF  KE+ VD     L+I DTAG E
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 164 QFASMRDLYIKNGQGF-------VVVYSLTNHHTFQDIKQMKE--LI-TRVKGSERVPIL 213
           +F S+       G  F       V+VY +TN  +F+ +   ++  LI    +  E  P +
Sbjct: 61  RFQSL-------GVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFV 113

Query: 214 LVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
           ++ NK+DL    R+V T   Q   +S G  P+ E SAK   NV++ F  I R
Sbjct: 114 VLGNKIDLEEK-RQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIAR 164

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  106 bits (267), Expect = 4e-28
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 6/168 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCV-LEILDTAGT 162
           FKV+V+G  GVGK+++  ++V G F + Y  TI  DF  K IE D    V L++ D AG 
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKE-LITRVKGS--ERVPILLVANKL 219
           E+F  M  +Y K   G ++V+ +T   TF+ + + K  L ++V     E +P LL+ANK 
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 220 DLASHQREVPTLDGQALAQSWGCP-FIEASAKNKTNVNEMFAEIVREM 266
           DL   +            +  G   + E SAK   N+ E    +V+ +
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNI 168

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  106 bits (267), Expect = 7e-28
 Identities = 68/204 (33%), Positives = 95/204 (46%), Gaps = 17/204 (8%)

Query: 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILD 158
             M+EFK+VVLG GGVGK+ L  + V   F E Y PTI      K IE  +    L++ D
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 159 TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANK 218
           TAG E++ S+R  Y +   G ++VY  T   +  ++ +      R    + VPILLV NK
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120

Query: 219 LDLASHQ-----------REVPTLDGQALAQS---WGCPFIEASAKNKT--NVNEMFAEI 262
           +DL   Q           REV  L     A          +E SAK+ T  NVNE+F E+
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKEL 180

Query: 263 VREMNFNPEKDNASFCWCSSCSIL 286
           +R++    EK            + 
Sbjct: 181 LRKLLEEIEKLVLKNELRQLDRLN 204

Length = 219

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  104 bits (262), Expect = 7e-28
 Identities = 53/157 (33%), Positives = 89/157 (56%), Gaps = 6/157 (3%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEIL--DTAGT 162
           KV+V+G+G VGKS++  +FV G F + Y  TI  DF  K+I + ++   + ++  DTAG 
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
           E+F ++   Y +  Q  ++V+S T+  +F+ I+  KE +    G   +P++LV  K+DL 
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGD--IPMVLVQTKIDLL 119

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259
             Q  +   + +ALA+    P    S K+  NV E+F
Sbjct: 120 -DQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  104 bits (261), Expect = 2e-27
 Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 4/164 (2%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFME-KYDPTIE-DFYRKEIEVDKAPCVLEILDTAGT 162
           FKV+++G  GVGK+ L V+F  G F+   +  T+   F  K + VD     L+I DTAG 
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
           E+F S+   Y ++    +++Y +TN  +F +I+     I        V I+L+ NK D++
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEY-AQSDVVIMLLGNKADMS 119

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             +R V   DG+ LA+ +G PF+E SAK   NV   F  + +E+
Sbjct: 120 G-ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  103 bits (259), Expect = 2e-27
 Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 4/164 (2%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK++++G   VGK+ +  +F SG F E+   TI  DF  K +E+      L+I DTAG E
Sbjct: 4   FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 63

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           +F ++   Y ++  G ++ Y +T   +F+ +    E + +   S  V +LL+ NK DL  
Sbjct: 64  RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASN-VVLLLIGNKCDLEE 122

Query: 224 HQREVPTLDGQALAQSWGCPF-IEASAKNKTNVNEMFAEIVREM 266
            QREV   +   LA+ +G    +E SAK  +NV E F  +  E+
Sbjct: 123 -QREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  103 bits (259), Expect = 3e-27
 Identities = 59/163 (36%), Positives = 86/163 (52%), Gaps = 3/163 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK +++G  GVGKS L +QF    F   +D TI  +F  + I +D     L+I DTAG E
Sbjct: 5   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
            F S+   Y +   G ++VY +T   TF  +    E   R   +  + I+L+ NK DL  
Sbjct: 65  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLE-DARQHSNSNMTIMLIGNKCDL-E 122

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
            +REV   +G+A A+  G  F+E SAK  +NV E F    +E+
Sbjct: 123 SRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 165

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  103 bits (259), Expect = 3e-27
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 7/165 (4%)

Query: 104 EFKVVVLGSGGVGKSALTVQFV-SGCFMEKYDPTIEDFYRKE-IEVDKAPCVLEILDTAG 161
           E K+V++G   VGKS L  + + +   + +Y P     Y    IE D       +LDTAG
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHH-TFQDIKQ-MKELITRVKGSERVPILLVANKL 219
            E + ++R LY +  +  + V+ +       ++I +   + I     S  VPI+LV NK+
Sbjct: 61  QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESG-VPIILVGNKI 119

Query: 220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264
           DL     ++ T      A+  G P I  SA+   N++  F  +  
Sbjct: 120 DLR--DAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVEA 162

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  103 bits (258), Expect = 4e-27
 Identities = 57/171 (33%), Positives = 92/171 (53%), Gaps = 15/171 (8%)

Query: 107 VVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA 166
           +VV+G G VGK+ L + + +  F E Y PT+ + Y  ++EVD  P  L + DTAG E + 
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD 60

Query: 167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDL---- 221
            +R L   +   F++ +S+ +  +F+++K  ++    VK     VPI+LV  KLDL    
Sbjct: 61  RLRPLSYPDTDVFLICFSVDSPASFENVK--EKWYPEVKHFCPNVPIILVGTKLDLRNDK 118

Query: 222 -----ASHQREVP--TLDGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVR 264
                 S +++ P     GQALA+  G   ++E SA  +  V E+F E +R
Sbjct: 119 STLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIR 169

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  103 bits (258), Expect = 1e-26
 Identities = 61/158 (38%), Positives = 86/158 (54%), Gaps = 3/158 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK +++G  GVGKS L +QF    F   +D TI  +F  + I +D  P  L+I DTAG E
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
            F S+   Y +   G ++VY +T   TF  +    E   R   +  + I+L+ NK DLA 
Sbjct: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE-DARQHANANMTIMLIGNKCDLA- 124

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261
           H+R V T +G+  A+  G  F+EASAK   NV E F +
Sbjct: 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162

Length = 210

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  102 bits (255), Expect = 2e-26
 Identities = 63/161 (39%), Positives = 94/161 (58%), Gaps = 6/161 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK++++G  GVGKS+L V F+S   +E   PTI  DF  K++ V      L I DTAG E
Sbjct: 15  FKILLIGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQM--KELITRVKGSERVPILLVANKLDL 221
           +F ++   Y +N QG ++VY +T   TF ++  +  KE+       + V  +LV NK+D 
Sbjct: 74  RFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVK-MLVGNKVDR 132

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262
            S +R+V   +G ALA+  GC F+E SAK + NV + F E+
Sbjct: 133 ES-ERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEEL 172

Length = 211

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 98.3 bits (245), Expect = 2e-25
 Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 3/161 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FK +++GS G GKS L  QF+   F +  + TI  +F  + + V      L+I DTAG E
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           +F S+   Y +   G ++VY +T+  +F  +        R   S  + I+LV NK DL  
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLT-DARTLASPDIVIILVGNKKDLED 119

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264
             REV  L+    AQ  G  F+E SA    NV E F +  R
Sbjct: 120 -DREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCAR 159

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 98.3 bits (245), Expect = 3e-25
 Identities = 56/151 (37%), Positives = 80/151 (52%), Gaps = 3/151 (1%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAG 161
           R FK++V+G   VGK+ LT +F +G F E+ + TI  DF  + +E+D     +++ DTAG
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAG 60

Query: 162 TEQF-ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
            E+F  SM   Y +N    V VY +TN  +F  +    E   +      VP +LV NK D
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCD 120

Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKN 251
           L   Q +VPT   Q  A +   P  E SAK+
Sbjct: 121 L-REQIQVPTDLAQRFADAHSMPLFETSAKD 150

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 96.3 bits (240), Expect = 2e-24
 Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 13/166 (7%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           K V++G G VGK++L V + +  +  +Y PT  D +   + VD  P  L++ DTAG ++F
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEF 61

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL---- 221
             +R L   +   F++ +S+ N  +FQ+I + K +    K + + PI+LV  + DL    
Sbjct: 62  DKLRPLCYPDTDVFLLCFSVVNPSSFQNISE-KWIPEIRKHNPKAPIILVGTQADLRTDV 120

Query: 222 -------ASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMF 259
                     ++ V     +ALA+  G C +IE SA  + N+ E+F
Sbjct: 121 NVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 96.6 bits (240), Expect = 3e-24
 Identities = 60/163 (36%), Positives = 95/163 (58%), Gaps = 4/163 (2%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQ 164
           +V+++GS GVGK++L  +F    F E    T+  DF  K +E+      L+I DTAG E+
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH 224
           F S+   Y ++ +G ++VY +T   TF D+ +  ++I +   SE   +LLV NKLD  + 
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCET- 119

Query: 225 QREVPTLDGQALAQS-WGCPFIEASAKNKTNVNEMFAEIVREM 266
            RE+    G+  AQ   G  F EASAK+  NV+E+F ++V ++
Sbjct: 120 DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 162

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 95.9 bits (239), Expect = 5e-24
 Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 16/177 (9%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKA-PCVLEILDTAG 161
            + K+VV+G GG GK+ L + +  G F E+Y PT+ + Y   ++V       L + DTAG
Sbjct: 2   LKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAG 61

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLD 220
            E +  +R L   +    ++ YS+ N  +  +++        V       PI+LV  K D
Sbjct: 62  QEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDK--WYPEVNHFCPGTPIVLVGLKTD 119

Query: 221 LASHQREVPTL-----------DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVRE 265
           L   +  V  L            G+++A+S G   +IE SAK   NV+E+F   +  
Sbjct: 120 LRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINV 176

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 94.6 bits (235), Expect = 7e-24
 Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 3/163 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK+V++G+ GVGK+ L  +F  G F      TI  DF  K +E+      L+I DTAG E
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           +F S+   Y ++    ++ Y +T   +F+ + +    I +   + +V  +LV NK+DLA 
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAE 126

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
            +REV     +  + +    ++E SAK   NV ++F ++   +
Sbjct: 127 -RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 95.2 bits (237), Expect = 1e-23
 Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 5/166 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCV-LEILDTAGT 162
            K+VVLG G  GK++L  +F    F + Y  TI  DF+ + I +  +  V L++ D  G 
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVP-ILLVANKLD 220
           +    M D YI   Q   +VY +TN  +F++++    ++ +V   SE  P ++LV NK D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           L  H R+V        AQ      I  SAK    V   F  I  E+
Sbjct: 121 L-EHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAEL 165

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 92.9 bits (231), Expect = 3e-23
 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 14/166 (8%)

Query: 108 VVLGSGGVGKSALTVQFVSGCFME---KYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           VV+G GGVGKS+L    + G   E       T   D Y KE++  K    L ++DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGK--VKLVLVDTPGLD 58

Query: 164 QFASMRD-----LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANK 218
           +F  +       L ++     ++V   T+  + +D K    LI R    E +PI+LV NK
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAK---LLILRRLRKEGIPIILVGNK 115

Query: 219 LDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264
           +DL   +     L  + LA+  G P  E SAK    V+E+F +++ 
Sbjct: 116 IDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 93.0 bits (231), Expect = 6e-23
 Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 4/161 (2%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK++++G  GVGKS+L ++F    F   Y  TI  DF  + +E++     L+I DTAG E
Sbjct: 7   FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           +F ++   Y +   G +VVY +TN  +F ++K+  + I   +  + V  +LV NK D   
Sbjct: 67  RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIE--QNCDDVCKVLVGNKND-DP 123

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264
            ++ V T D    A   G    E SAK   NV EMF  I  
Sbjct: 124 ERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITE 164

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 93.1 bits (231), Expect = 1e-22
 Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK+V++G  GVGKS +  +F    F  +   TI  +F  + ++V+      +I DTAG E
Sbjct: 13  FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           ++ ++   Y +   G ++VY +T   TF ++++ ++EL  R      + I++  NK DL 
Sbjct: 73  RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLREL--RDHADSNIVIMMAGNKSDL- 129

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           +H R V   DGQALA+  G  F+E SA   TNV + F  I+ E+
Sbjct: 130 NHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEI 173

Length = 216

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 91.3 bits (227), Expect = 1e-22
 Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 6/166 (3%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQ 164
           KV+ +G+ GVGKS +  ++  G F+ KY PTI  D+  K++ V      +   D +G  +
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDI----KQMKELITRVKGSERVPILLVANKLD 220
           +  +R+ + K+ QG ++VY +T+  +F+ +    K+MK+        E + +++ ANK+D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           L  H R V   +G+  A+S G  + E SA     VNEMF  +   +
Sbjct: 122 LTKH-RAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 90.0 bits (223), Expect = 3e-22
 Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 4/163 (2%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           F+++++G  GVGK+ L  +F    F   +  TI  DF  K IEVD     ++I DTAG E
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           ++ ++   Y +  QG  +VY +++  ++Q I +    +      E V  +L+ NK D   
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKAD-EE 118

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
            +R+V    G  LA+ +G  F E SA    N+ E F  +  E+
Sbjct: 119 QKRQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRL-TEL 160

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 90.5 bits (224), Expect = 5e-22
 Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 18/190 (9%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           M+  K VV+G G VGK+ L + + +  F ++Y PT+ D Y  +  VD     L + DTAG
Sbjct: 1   MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQM--KELITRVKGSERVPILLVANKL 219
            E++  +R L       F++ +S+ +  ++++++     E+         VPILLV  K 
Sbjct: 61  QEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPN---VPILLVGTKK 117

Query: 220 DLAS---------HQREVPTL--DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVRE-M 266
           DL +          Q + P     G ALA+      ++E SA N+  V E+FAE VR  +
Sbjct: 118 DLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177

Query: 267 NFNPEKDNAS 276
           N  P KD  S
Sbjct: 178 NPTPIKDTKS 187

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 89.5 bits (222), Expect = 5e-22
 Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 3/163 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK +++G  GVGKS L  QF    FM     TI  +F  + IEV+     L+I DTAG E
Sbjct: 3   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           +F ++   Y +   G ++VY +T   T+  +         +     V I L+ NK DL +
Sbjct: 63  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IFLIGNKADLEA 121

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
            QR+V   + +  A   G  F+E SAK   NV + F E  +++
Sbjct: 122 -QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 88.8 bits (220), Expect = 2e-21
 Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 13/172 (7%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILD----- 158
            +V VLG+ GVGK+A+  QF++  F E+Y PT     YR  + +      L ILD     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 159 ---TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELI--TRVKGSERVPIL 213
                  +++   R   ++N + F++VY + +  +F  +K +++ I  TR  G++  PI+
Sbjct: 61  RYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIV 120

Query: 214 LVANKLDLASHQREVPTLDGQALA-QSWGCPFIEASAKNKTNVNEMFAEIVR 264
           +V NK D   H R  P      L  +SW C ++E SAK   ++  +F E++ 
Sbjct: 121 VVGNKRDQQRH-RFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLI 171

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 87.2 bits (216), Expect = 6e-21
 Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 12/163 (7%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCV----------L 154
           K++ LG  GVGK+    ++    F  K+  T+  DF  K +  +               L
Sbjct: 6   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65

Query: 155 EILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILL 214
           ++ DTAG E+F S+   + ++  GF++++ LT+  +F +++     +      E   I+L
Sbjct: 66  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVL 125

Query: 215 VANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
           + NK DL   QREV     + LA  +G P+ E SA    NV +
Sbjct: 126 IGNKADL-PDQREVSERQARELADKYGIPYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 85.3 bits (211), Expect = 2e-20
 Identities = 48/162 (29%), Positives = 86/162 (53%), Gaps = 7/162 (4%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK++++G+  VGK++   ++    F   +  T+  DF  K +  +     L+I DTAG E
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVK--GSERVPILLVANKLDL 221
           ++ ++   Y +   GF+++Y +TN  +F  +   ++  T++K    +   ++LV NK D+
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAV---QDWSTQIKTYSWDNAQVILVGNKCDM 118

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263
              +R V    G+ LA   G  F EASAK   NV ++F  +V
Sbjct: 119 ED-ERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLV 159

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 83.3 bits (206), Expect = 3e-19
 Identities = 46/167 (27%), Positives = 87/167 (52%), Gaps = 6/167 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK+V++G GG GK+    + ++G F +KY+PTI  + +  +   +         DTAG E
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           +F  +RD Y  +GQ  ++++ +T   T++++      + RV   E +PI+L  NK+D+ +
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNP 270
            Q +   +      +     + E SAK+  N  + F  + R++  +P
Sbjct: 132 RQVKAKQV---TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175

Length = 219

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 81.7 bits (202), Expect = 6e-19
 Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 15/167 (8%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           K+V++G G  GK+ L + F    F E Y PT+ + Y  +IEVD     L + DTAG E +
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 62

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS- 223
             +R L   +    ++ +S+ +  + ++I +  +    VK     VPI+LV NK DL + 
Sbjct: 63  DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 120

Query: 224 ----------HQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMF 259
                      Q  V   +G+A+A+  G   ++E SAK K  V E+F
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 81.0 bits (200), Expect = 1e-18
 Identities = 54/165 (32%), Positives = 73/165 (44%), Gaps = 8/165 (4%)

Query: 106 KVVVLGSGGVGKSALTVQFVS--GCFMEKYDPTIE-DFYRKEIEVDKAPCVLE--ILDTA 160
           +  V+G   VGKSAL   F S    F + Y  T   D   K + V      +E  I D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKL 219
           G E F+ M +   +      VVY +TN  +F +  + +  + T   G    P +LV NK 
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLH-TPGVLVGNKC 120

Query: 220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264
           DL   +REV     QALAQ+    F E SAK        F  + R
Sbjct: 121 DLTD-RREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 79.3 bits (196), Expect = 4e-18
 Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 16/172 (9%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE------DFYRKEIEVDKAPCVLEILD 158
           FK+V++G GG GK+    + ++G F +KY  T+       DF+      ++      + D
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFH-----TNRGKIRFNVWD 55

Query: 159 TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANK 218
           TAG E+F  +RD Y   GQ  ++++ +T+  T++++      + RV  +  +PI+L  NK
Sbjct: 56  TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN--IPIVLCGNK 113

Query: 219 LDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNP 270
           +D+    R+V         +     + E SAK+  N  + F  + R++  NP
Sbjct: 114 VDIK--DRKVKPKQITFH-RKKNLQYYEISAKSNYNFEKPFLWLARKLLGNP 162

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 79.3 bits (195), Expect = 4e-18
 Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 15/172 (8%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164
            K VV+G G VGK+ L + + +  F E+Y PT+ D Y   + V     +L + DTAG E 
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60

Query: 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS 223
           +  +R L       F++ +S+ N  +FQ++K+  E +  +K  +  VP LL+  ++DL  
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKE--EWVPELKEYAPNVPYLLIGTQIDLRD 118

Query: 224 ---------HQREVPTL--DGQALAQSWG-CPFIEASAKNKTNVNEMFAEIV 263
                      +E P     GQ LA+  G C ++E SA  +  +  +F E +
Sbjct: 119 DPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 170

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 78.7 bits (194), Expect = 9e-18
 Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 14/184 (7%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           KVVVLG G  GK++L   F  G F + Y+PT+ + Y  +I VD     L + DTAG E+F
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDI--KQMKELITRVKGSERVPILLVANKLDL-- 221
             +R L   +    ++ +S+ N  + +++  K + E+     G   V ++LVA K DL  
Sbjct: 62  DRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPG---VKLVLVALKCDLRE 118

Query: 222 --ASHQREVPTLD---GQALAQSWG-CPFIEASAKNKTNVNEMFAEIVR-EMNFNPEKDN 274
                 R   T+    G A+A+    C ++E SAK    VNE F E  R  +N  P   +
Sbjct: 119 PRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVALNARPPHPH 178

Query: 275 ASFC 278
           +  C
Sbjct: 179 SRAC 182

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 76.7 bits (189), Expect = 1e-17
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 2/116 (1%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FYRKEIEVDKAPCVLEILDTAGTEQ 164
           KVVV+G  G GKS+L  Q V G F  +      D      +EVD    +L I D  G E+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSE-RVPILLVANKL 219
                 +++K     ++VY LT+  +  ++ ++   +  ++    ++P++LV NKL
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 79.0 bits (195), Expect = 1e-17
 Identities = 49/169 (28%), Positives = 89/169 (52%), Gaps = 6/169 (3%)

Query: 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGT 162
           EFK++++G GGVGK+    + ++G F +KY PT+  + +  +   +  P    + DTAG 
Sbjct: 9   EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
           E+F  +RD Y   GQ  ++++ +T+  T++++      I RV   E +PI+LV NK+D+ 
Sbjct: 69  EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVK 126

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
              R+V         +     + + SAK+  N  + F  + R +  +P 
Sbjct: 127 --DRQVKARQIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPN 172

Length = 215

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 78.4 bits (193), Expect = 2e-17
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 7/167 (4%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFME-KYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           KVV+LG   VGK++L  ++V   F+   Y  TI   F  K + V +    L I DTAG+E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           ++ +M  +Y +  +  +V Y LT+  +F+  K   + +  ++  E   I L   K DL  
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIE 119

Query: 224 HQ---REVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
                R+V   D Q  A        E S+K   NV+E+F ++  +  
Sbjct: 120 QDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFV 166

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 77.1 bits (189), Expect = 3e-17
 Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 6/149 (4%)

Query: 129 FMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTN 187
           F   Y  TI  DF  K + +D+ P  L++ DTAG E+F S+   YI++    +VVY +TN
Sbjct: 5   FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN 64

Query: 188 HHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEA 247
             +F++  +  + I   +G + V I LV NK DL    R+V   +G   AQ +   F E 
Sbjct: 65  RQSFENTTKWIQDILNERGKD-VIIALVGNKTDLGD-LRKVTYEEGMQKAQEYNTMFHET 122

Query: 248 SAKNKTNVNEMFAEIVREMNFNPEKDNAS 276
           SAK   N+  +F +I  ++   P  DN++
Sbjct: 123 SAKAGHNIKVLFKKIAAKL---PNLDNSN 148

Length = 176

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 76.8 bits (189), Expect = 5e-17
 Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 23/192 (11%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           K+V++G G  GK++L   F  G F E+Y PT+ + Y  +  VD  P  L + DTAG E++
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQM-KELITRVKGSERVPILLVANKLDL--- 221
             +R L        ++ +++    + ++++    E + R   +  VP++LV  K DL   
Sbjct: 63  ERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPN--VPVILVGLKKDLRQE 120

Query: 222 ------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMF------AEIVREMNF 268
                  +    VP    + +A++ G   ++E SA     V+++F      A +VR    
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATRAALLVR---- 176

Query: 269 NPEKDNASFCWC 280
              K+      C
Sbjct: 177 KSGKEEPGANCC 188

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 75.3 bits (185), Expect = 1e-16
 Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 15/166 (9%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           K V +G G VGK+ + + + S  F   Y PT+ D +   + VD     L + DTAG E +
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDY 62

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDI--KQMKELITRVKGSERVPILLVANKLDL-- 221
             +R L  +    F++ +SL +  +++++  K + EL     G   VPI+LV  KLDL  
Sbjct: 63  NRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPG---VPIVLVGTKLDLRD 119

Query: 222 -----ASHQREVP--TLDGQALAQSWGCP-FIEASAKNKTNVNEMF 259
                A H   VP  T  G+ L +  G   +IE S+K + NV  +F
Sbjct: 120 DKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 72.6 bits (178), Expect = 1e-15
 Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 2/159 (1%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQ 164
           KV+V+G   VGK+ L  +F    F + Y  TI  DF  +  EV   P  L++ DTAG E+
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS- 223
           F  +   Y +  Q  ++V+ LT+  + +  +Q  E   +      V + LV  K DL+S 
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262
            Q  +   D   LA+     +   SA    NV + F  +
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRV 160

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 72.5 bits (178), Expect = 2e-15
 Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 13/171 (7%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           K VV+G G VGK+ L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 62

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ 225
             +R L       F++ +SL +  +F++++  K            PI+LV  KLDL   +
Sbjct: 63  DRLRPLSYPQTDVFLICFSLVSPASFENVRA-KWYPEVRHHCPNTPIILVGTKLDLRDDK 121

Query: 226 REVPTL-----------DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
             +  L            G A+A+  G   ++E SA  +  +  +F E +R
Sbjct: 122 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 172

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 72.2 bits (177), Expect = 2e-15
 Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 13/170 (7%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           K VV+G G VGK+ L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 62

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL---- 221
             +R L       F+V +S+ +  +F+++K+ K +        + P LLV  ++DL    
Sbjct: 63  DRLRPLSYPQTDVFLVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDP 121

Query: 222 -------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIV 263
                   + Q+ +    G+ LA+      ++E SA  +  +  +F E +
Sbjct: 122 STIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAI 171

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 70.7 bits (173), Expect = 9e-15
 Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 9/186 (4%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
            K +++G   VGK  +      G     Y   +  D+    I +D     L++ DT+G  
Sbjct: 7   LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F ++   Y +  QG ++VY +TN  +F  I + +KE+     G   VP +LV N+L LA
Sbjct: 67  RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPG---VPKILVGNRLHLA 123

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM---NFNPEKDNASFCW 279
             +R+V T   QA A+  G  F E S     N+ E F E+ R +   +  P +     C 
Sbjct: 124 -FKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRHGRPPQSPPQNCS 182

Query: 280 CSSCSI 285
            +SC I
Sbjct: 183 RNSCKI 188

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 70.0 bits (171), Expect = 2e-14
 Identities = 40/162 (24%), Positives = 81/162 (50%), Gaps = 6/162 (3%)

Query: 110 LGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASM 168
           +G GG GK+    + ++G F +KY  T+  + +      ++ P    + DTAG E+F  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 169 RDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREV 228
           RD Y   GQ  ++++ +T   T++++      + RV   E +PI+L  NK+D+   + + 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKDRKVKA 118

Query: 229 PTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNP 270
            ++      +     + + SAK+  N  + F  + R++  +P
Sbjct: 119 KSI---TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 157

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           K+V++G    GK+AL   F    F E Y PT+ + Y    EVDK    L + DT+G+  +
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSPYY 62

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLA-- 222
            ++R L   +    ++ + ++   T   +  +K+    V+      P+LLV  K DL   
Sbjct: 63  DNVRPLSYPDSDAVLICFDISRPETLDSV--LKKWKGEVREFCPNTPVLLVGCKSDLRTD 120

Query: 223 -------SHQREVPT--LDGQALAQSWGC-PFIEASAKNKTN-VNEMF 259
                  S++R++P     G+ LA+  G   ++E SAK   N V ++F
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVF 168

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 65.1 bits (159), Expect = 6e-13
 Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 19/167 (11%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
           ++ ++V++G  GVGKS+L +  VS  F E     + +      +V        I+DT+  
Sbjct: 1   KDVRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPE-ITIPADVTPERVPTTIVDTSSR 59

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
            Q  +     I+      +VYS+    T + I + K L    +   +VPI+LV NK DL 
Sbjct: 60  PQDRANLAAEIRKANVICLVYSVDRPSTLERI-RTKWLPLIRRLGVKVPIILVGNKSDLR 118

Query: 223 SHQREVPTLDGQALAQSWGCPF----------IEASAKNKTNVNEMF 259
               +    +          P           +E SAK   NV+E+F
Sbjct: 119 DGSSQAGLEEEML-------PIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 63.7 bits (155), Expect = 2e-12
 Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 15/165 (9%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-----FYRKEIEVDKAPCVLEILDTA 160
           K+++LG   VGKS L  +F+    M+ Y+P          Y+   + +    +++  DTA
Sbjct: 2   KIILLGDSAVGKSKLVERFL----MDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTA 57

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
           G E+F +M   Y       ++V+ +T   T++++ +  E +   +    +P ++VANK+D
Sbjct: 58  GQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR--PEIPCIVVANKID 115

Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
           L        T      A+    P    SA + TNV ++F + ++ 
Sbjct: 116 LDPSV----TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 58.5 bits (141), Expect = 2e-10
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           K+VV+G    GK+AL   F   CF E Y PT+ + Y    E+D     L + DT+G+  +
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLA-- 222
            ++R L   +    ++ + ++   T   + K+ K  I     + +  +LLV  K DL   
Sbjct: 67  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRTD 124

Query: 223 -------SHQREVPTL--DGQALAQSWG-CPFIEASAKNKTN-VNEMF 259
                  S+ R+ P     G  +A+  G   +IE SA    N V ++F
Sbjct: 125 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 172

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 11/161 (6%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQ 164
           K+ +LG   +GK++L V++V G F E+Y  T+  +F  K I +        I D  G  +
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPI-LLVANKLDL-- 221
           F +M  L  K+    + ++ LT   T   I   KE   + +G  +  I +LV  K DL  
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSI---KEWYRQARGFNKTAIPILVGTKYDLFA 118

Query: 222 ---ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259
                 Q E+ T   +  A++   P I  S  +  NV ++F
Sbjct: 119 DLPPEEQEEI-TKQARKYAKAMKAPLIFCSTSHSINVQKIF 158

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 56.2 bits (135), Expect = 2e-09
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 20/170 (11%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           K+VV+G    GK+AL   F    + E Y PT+ + Y    E+DK    L + DT+G+  +
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSYY 62

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP---ILLVANKLDLA 222
            ++R L   +    ++ + ++   T   + +  +     +  E  P   ++LV  KLD+ 
Sbjct: 63  DNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQ----GETQEFCPNAKLVLVGCKLDMR 118

Query: 223 ---------SHQREVPTL--DGQALAQSWGC-PFIEASAKNKTN-VNEMF 259
                    S QR +P     G  LA+  G   ++E S++   N V ++F
Sbjct: 119 TDLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVF 168

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 54.4 bits (131), Expect = 3e-09
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 12/161 (7%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE-- 163
           K+ ++G+   GKSAL  ++++G +++   P     ++KE+ VD    +L I D  G    
Sbjct: 2   KLGIVGNLRSGKSALVHRYLTGSYVQLESPEGGR-FKKEVLVDGQSHLLLIRDEGGAPDA 60

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-A 222
           QFA   D         + V+SL +  +FQ + ++   ++  +    +P++LV  +  + A
Sbjct: 61  QFAGWVD-------AVIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQDAISA 113

Query: 223 SHQREVPTLDGQAL-AQSWGCPFIEASAKNKTNVNEMFAEI 262
           S+ R +     + L A    C + E  A    NV  +F E 
Sbjct: 114 SNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 54.9 bits (132), Expect = 5e-09
 Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 37/191 (19%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           KVV+LG   VGK++L  +++   F +        FY K+      P  + I DTAG EQF
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQF 57

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH- 224
             +  +Y +     ++ Y ++N  + ++++     +T    +E     +V NKLDL    
Sbjct: 58  HGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEG 116

Query: 225 -----------------QREVPTLDGQALAQ--------------SWGCPFIEASAKNKT 253
                            QR+V   D +A  +              +      E SAK   
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY 176

Query: 254 NVNEMFAEIVR 264
           NV+E+F  +  
Sbjct: 177 NVDELFEYLFN 187

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 15/157 (9%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           K+V++G    GK+A+       C+ E Y PT+ + Y   +E ++    L + DT+G+  +
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQD-IKQMKELITRVKGSERVPILLVANKLDLA-- 222
            ++R L   +    ++ + ++    F   +K+ +  I     S R  ILL+  K DL   
Sbjct: 75  DNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTR--ILLIGCKTDLRTD 132

Query: 223 -------SHQREVPTL--DGQALAQSWGCP-FIEASA 249
                  S+Q++ P     G A+A+  G   ++E SA
Sbjct: 133 LSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSA 169

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 35/168 (20%), Positives = 72/168 (42%), Gaps = 13/168 (7%)

Query: 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPT----IEDFYRKEIEVDKAPCVLEILDT 159
           E K++++G GGVGK++L  Q +   F      T    ++D+     E  K    L + D 
Sbjct: 1   EAKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKK--IRLNVWDF 58

Query: 160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANK 218
            G E + +    ++ +   +++V+ L    T  ++ ++   + ++K      P++LV   
Sbjct: 59  GGQEIYHATHQFFLTSRSLYLLVFDLR---TGDEVSRVPYWLRQIKAFGGVSPVILVGTH 115

Query: 219 LDLASHQR-EVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
           +D +  +      L+ +  A          S KN   + E+   I +E
Sbjct: 116 IDESCDEDILKKALNKKFPAIIND--IHFVSCKNGKGIAELKKAIAKE 161

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 11/163 (6%)

Query: 107 VVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA 166
           + ++G    GK+ L     SG F E   PT+    RK   V K    +++ D  G  +F 
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRK---VTKGNVTIKVWDLGGQPRFR 58

Query: 167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQ 225
           SM + Y +     V V    +    +  K  + +L+ +    E +P+L++ NK DL    
Sbjct: 59  SMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGAL 117

Query: 226 RE---VPTLDGQALA-QSWGCPFIEASAKNKTNVNEMFAEIVR 264
                +  ++ +++  +   C  I  SAK KTN++ +   +++
Sbjct: 118 SVDELIEQMNLKSITDREVSCYSI--SAKEKTNIDIVLDWLIK 158

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 44/179 (24%), Positives = 61/179 (34%), Gaps = 42/179 (23%)

Query: 108 VVLGSGGVGKSAL-------TVQFVSGCFMEKYDPTIEDFYRKEIEVDKA-PCVLEILDT 159
            + G   VGKS+L        V  VS         T  D  RKE E+    P  + ++DT
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVS-----PIPGTTRDPVRKEWELLPLGP--VVLIDT 53

Query: 160 AG---TEQFASMR-----------DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVK 205
            G          R           DL +      VV   LT       +  ++E      
Sbjct: 54  PGLDEEGGLGRERVEEARQVADRADLVL-----LVVDSDLTPVEEEAKLGLLRER----- 103

Query: 206 GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264
                P+LLV NK+DL     E   L  + L      P I  SA     ++E+  +I  
Sbjct: 104 ---GKPVLLVLNKIDLVPESEEEELLRERKLELLPDLPVIAVSALPGEGIDELRKKIAE 159

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 209 RVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNF 268
            +P+++  N +D A  +     +D + L++  G P +  SA+    ++E+   I+     
Sbjct: 105 GIPVVVALNMMDEAEKKGI--KIDIKKLSELLGVPVVPTSARKGEGIDELKDAIIEVAEG 162

Query: 269 NPEKDNASF 277
                    
Sbjct: 163 KVPPAPLRI 171

Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 17/170 (10%)

Query: 99  SFTMREFKVVVLGSGGVGKS----ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPC-- 152
           +  M E K+VV+G  G GK+    AL+ + +     +    + +      + +D      
Sbjct: 5   ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL 64

Query: 153 ----VLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSE 208
                + +  T G E+F  M ++  +   G +V+   +   TF      +E+I  +    
Sbjct: 65  DEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHA----EEIIDFLTSRN 120

Query: 209 RVPILLVANKLDLASHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNE 257
            +P+++  NK DL       P    +AL       P IE  A       +
Sbjct: 121 PIPVVVAINKQDLFDALP--PEKIREALKLELLSVPVIEIDATEGEGARD 168

Length = 187

>gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 196 QMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
           Q+ EL         +P+++  N +D A  +     +D   L++  G P +  SA+    +
Sbjct: 97  QLLEL--------GLPVVVALNMIDEAEKRGI--KIDLDKLSELLGVPVVPTSARKGEGI 146

Query: 256 NEMFAEIVR 264
           +E+   I +
Sbjct: 147 DELLDAIAK 155

Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 41/196 (20%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYD------PTIE--DFYRKEIEV--------D 148
            K VV+G   VGK+ L         + +Y       PT+   D YR   EV        D
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 149 KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV--YSLTNHHTFQDIKQMKELITRVKG 206
                L + DT G       +D     G+  VV+  +S+ + ++ +++K M     R   
Sbjct: 63  GVSVSLRLWDTFGDHD----KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIR-HF 117

Query: 207 SERVPILLVANKLDLASHQRE------------------VPTLDGQALAQSWGCPFIEAS 248
             RVP++LV  KLDL     +                  +P   G+A+A+  G P+ E S
Sbjct: 118 CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETS 177

Query: 249 AKNKTNVNEMFAEIVR 264
              +  V ++F   +R
Sbjct: 178 VVTQFGVKDVFDNAIR 193

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 107 VVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA 166
           ++VLG  G GK++L     S   +E   PT   F    I    A  ++E+L+  G++   
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPT-TGFNSVAIPTQDA--IMELLEIGGSQNLR 58

Query: 167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
                Y+   QG + V    +       +Q  EL   ++    +P++++ANK DL 
Sbjct: 59  KYWKRYLSGSQGLIFVVDSADSERLPLARQ--ELHQLLQHPPDLPLVVLANKQDLP 112

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 42/183 (22%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFME--KYDP--TIEDFYRKEIEVDKAPCVLEIL 157
           M++  V ++G+  VGK+ L    ++G   +   + P  T+E   +KE ++      +EI+
Sbjct: 1   MKKLTVALVGNPNVGKTTLFNA-LTGANQKVGNW-PGVTVE---KKEGKLKYKGHEIEIV 55

Query: 158 DTAGT---------EQFASMRDLYIKNGQ--GFVVVYSLTN-----HHTFQDIKQMKELI 201
           D  GT         E+ A  RD ++  G+    V V   TN     + T Q    + EL 
Sbjct: 56  DLPGTYSLTAYSEDEKVA--RD-FLLEGKPDLIVNVVDATNLERNLYLTLQ----LLEL- 107

Query: 202 TRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261
                   +P++L  N +D A  +     +D + L++  G P +   AK    + E+   
Sbjct: 108 -------GIPMILALNMIDEAKKRGI--RIDIEKLSKLLGVPVVPTVAKRGEGLEELKRA 158

Query: 262 IVR 264
           I+ 
Sbjct: 159 IIE 161

Length = 653

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 43/203 (21%), Positives = 71/203 (34%), Gaps = 41/203 (20%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-------EDFYRKEIEVDKAPCVLEILD 158
           KV+VLG  GVGKS+L         +     T+          Y +    +K   V E+ D
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYV-ELWD 60

Query: 159 TAGT----EQFASMRDLYIKNGQGFVVVYSLTNHHTFQ------------DIKQMKELIT 202
             G+    E   S R ++     G + V+ LTN  + Q            D      L+T
Sbjct: 61  VGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVT 120

Query: 203 RVK------GSERVPILLVANKLDLASH--------QREVPTLDGQALAQSWGCP---FI 245
                        VP+L++  KLD            +    + D  A   +  C     +
Sbjct: 121 NGDYDSEQFAGNPVPLLVIGTKLDQIPEAKRNWVLTRTAFLSEDFNAEEINLDCTNGRLL 180

Query: 246 EASAKNKTNVNEMFAEIVREMNF 268
            A + N   ++  F +++ +  F
Sbjct: 181 AAGSSNAVKLSRFFDKVIEKRYF 203

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
            ELI  +K   ++P ++V NK+DL     E+     + L + +G P I  SA     ++E
Sbjct: 104 LELIEELK-ERKIPYIVVINKIDLGEESAEL-----EKLEKKFGLPPIFVSALTGEGIDE 157

Query: 258 MFAEIVR 264
           +   I+ 
Sbjct: 158 LKEAIIE 164

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 59/204 (28%)

Query: 102 MRE-FKVVVLGSGGVGKS----ALT------VQFVSGCFMEKYDPTIEDFYRKEIEVDKA 150
           +RE  KVV++G   VGKS    AL       V  ++G        T  D   ++I ++  
Sbjct: 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAG--------TTRDVIEEDINLNGI 265

Query: 151 PCVLEILDTAG---TEQ----------FASMRD----LYIKNGQGFVVVYSLTNHHTFQD 193
           P  + ++DTAG   T+             ++ +    L++ +           +    ++
Sbjct: 266 P--VRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDA----------SQPLDKE 313

Query: 194 IKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT 253
              + EL+      ++ PI++V NK DL S       L+ + LA   G   I  SAK   
Sbjct: 314 DLALIELL-----PKKKPIIVVLNKADLVSK----IELESEKLAN--GDAIISISAKTGE 362

Query: 254 NVNEMFAEIVREMNFNPEKDNASF 277
            ++ +   I +            F
Sbjct: 363 GLDALREAIKQLFGKGLGNQEGLF 386

Length = 454

>gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 42/156 (26%), Positives = 59/156 (37%), Gaps = 46/156 (29%)

Query: 141 YRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI------ 194
           Y+  ++V K P  +  +DT G E F +MR      G       S+T      DI      
Sbjct: 45  YQVPLDVIKIP-GITFIDTPGHEAFTAMR----ARG------ASVT------DIAILVVA 87

Query: 195 ------KQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ------SWG- 241
                  Q  E I   K +  VPI++  NK+D        P    Q L +       WG 
Sbjct: 88  ADDGVMPQTIEAINHAKAA-GVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGG 143

Query: 242 -CPFIEASAKNKTNVNEMFAEI-----VREMNFNPE 271
              F+  SAK    ++E+   I     V E+  NPE
Sbjct: 144 DVIFVPVSAKTGEGIDELLELILLLAEVLELKANPE 179

Length = 509

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
KOG0084|consensus	205		100.0
KOG0092|consensus	200		100.0
KOG0094|consensus	221		100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
KOG0078|consensus	207		100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0080|consensus	209		100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
KOG0098|consensus	216		100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.98
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.98
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.98
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.98
KOG0394|consensus	210		99.97
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.97
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.97
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.97
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.97
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.97
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.97
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.97
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.97
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.97
KOG0079|consensus	198		99.97
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.97
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.97
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.97
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.97
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.97
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.97
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.97
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.97
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.97
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.97
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.97
KOG0087|consensus	222		99.97
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.97
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.97
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.97
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.97
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.97
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.97
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.97
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.97
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.97
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.97
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.97
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.97
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.96
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.96
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.96
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.96
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.96
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.96
KOG0093|consensus	193		99.96
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.96
PLN03110	216	Rab GTPase; Provisional	99.96
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.96
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.96
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.96
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.96
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.96
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.96
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.96
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.96
KOG0091|consensus	213		99.96
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.96
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.96
PLN03118	211	Rab family protein; Provisional	99.96
PLN03108	210	Rab family protein; Provisional	99.96
KOG0086|consensus	214		99.96
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.96
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.96
KOG0088|consensus	218		99.96
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.96
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.96
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.96
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.96
KOG0395|consensus	196		99.96
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.96
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.96
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.96
KOG0095|consensus	213		99.96
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.95
KOG0081|consensus	219		99.95
KOG0393|consensus	198		99.95
PLN00223	181	ADP-ribosylation factor; Provisional	99.95
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.95
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.95
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.95
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.95
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.95
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.95
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.95
KOG0083|consensus	192		99.95
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.95
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.94
PTZ00133	182	ADP-ribosylation factor; Provisional	99.94
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.94
KOG0097|consensus	215		99.94
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.94
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.94
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.94
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.93
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.93
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.93
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.93
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.93
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.93
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.92
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.92
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.92
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.92
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.92
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.92
PTZ00099	176	rab6; Provisional	99.91
KOG0073|consensus	185		99.91
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.91
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.91
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.91
PRK12299	335	obgE GTPase CgtA; Reviewed	99.9
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.9
KOG0070|consensus	181		99.9
KOG4252|consensus	246		99.9
PRK05306	787	infB translation initiation factor IF-2; Validated	99.9
PLN00023	334	GTP-binding protein; Provisional	99.89
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.89
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.89
CHL00189	742	infB translation initiation factor 2; Provisional	99.89
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.89
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.89
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.88
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.88
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.88
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.88
KOG0075|consensus	186		99.88
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.87
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.87
COG1100	219	GTPase SAR1 and related small G proteins [General	99.87
KOG1145|consensus	683		99.87
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.87
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.87
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.87
PRK04213	201	GTP-binding protein; Provisional	99.87
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.87
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.87
PRK03003	472	GTP-binding protein Der; Reviewed	99.87
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.86
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.86
PRK15494	339	era GTPase Era; Provisional	99.86
cd00881	189	GTP_translation_factor GTP translation factor fami	99.86
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.86
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.86
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.86
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.86
KOG0071|consensus	180		99.86
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.85
PRK03003	472	GTP-binding protein Der; Reviewed	99.85
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.85
KOG0076|consensus	197		99.85
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.84
PRK12297	424	obgE GTPase CgtA; Reviewed	99.84
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.84
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.84
PRK05433	600	GTP-binding protein LepA; Provisional	99.84
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.83
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.83
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.83
PRK12296	500	obgE GTPase CgtA; Reviewed	99.83
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.83
KOG3883|consensus	198		99.83
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.82
PRK11058	426	GTPase HflX; Provisional	99.82
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.82
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.82
PRK00089	292	era GTPase Era; Reviewed	99.82
COG1159	298	Era GTPase [General function prediction only]	99.82
PRK00093	435	GTP-binding protein Der; Reviewed	99.82
PRK12298	390	obgE GTPase CgtA; Reviewed	99.82
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.81
PRK00093	435	GTP-binding protein Der; Reviewed	99.81
PRK10218	607	GTP-binding protein; Provisional	99.81
KOG1673|consensus	205		99.81
KOG0462|consensus	650		99.8
COG1160	444	Predicted GTPases [General function prediction onl	99.8
COG1160	444	Predicted GTPases [General function prediction onl	99.8
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.8
COG0486	454	ThdF Predicted GTPase [General function prediction	99.8
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.79
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.79
PRK12317	425	elongation factor 1-alpha; Reviewed	99.79
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.79
COG2229	187	Predicted GTPase [General function prediction only	99.79
PRK04004	586	translation initiation factor IF-2; Validated	99.79
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.79
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.79
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.78
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.78
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.77
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.77
PRK12736	394	elongation factor Tu; Reviewed	99.77
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.76
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.76
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.76
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.75
KOG0074|consensus	185		99.75
KOG0072|consensus	182		99.75
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.75
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.75
PRK12735	396	elongation factor Tu; Reviewed	99.75
KOG0096|consensus	216		99.75
COG0218	200	Predicted GTPase [General function prediction only	99.74
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.74
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.74
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.73
CHL00071	409	tufA elongation factor Tu	99.72
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.72
PLN03127	447	Elongation factor Tu; Provisional	99.71
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.71
PRK00049	396	elongation factor Tu; Reviewed	99.71
KOG1423|consensus	379		99.71
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.7
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.7
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.7
PLN03126	478	Elongation factor Tu; Provisional	99.7
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.67
KOG4423|consensus	229		99.67
PLN00043	447	elongation factor 1-alpha; Provisional	99.66
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.66
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.65
PTZ00141	446	elongation factor 1- alpha; Provisional	99.65
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.65
KOG1489|consensus	366		99.64
PRK13351	687	elongation factor G; Reviewed	99.64
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.64
COG1084	346	Predicted GTPase [General function prediction only	99.64
KOG0077|consensus	193		99.63
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.62
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.62
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.62
COG2262	411	HflX GTPases [General function prediction only]	99.61
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.61
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.61
PRK12739	691	elongation factor G; Reviewed	99.61
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.6
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.59
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.58
KOG1707|consensus	625		99.57
KOG1191|consensus	531		99.57
COG1163	365	DRG Predicted GTPase [General function prediction	99.56
PRK00007	693	elongation factor G; Reviewed	99.56
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.56
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.54
PRK14845	1049	translation initiation factor IF-2; Provisional	99.54
COG0536	369	Obg Predicted GTPase [General function prediction	99.54
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.54
COG3596	296	Predicted GTPase [General function prediction only	99.53
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.53
PRK09602	396	translation-associated GTPase; Reviewed	99.5
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.5
PRK12740	668	elongation factor G; Reviewed	99.5
KOG0090|consensus	238		99.49
KOG1144|consensus	1064		99.48
KOG0461|consensus	522		99.45
PRK07560	731	elongation factor EF-2; Reviewed	99.43
PRK09866	741	hypothetical protein; Provisional	99.42
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.41
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.35
PRK13768	253	GTPase; Provisional	99.35
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.35
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.33
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.33
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.32
KOG1490|consensus	620		99.31
KOG0458|consensus	603		99.3
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.29
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.28
PTZ00416	836	elongation factor 2; Provisional	99.28
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.27
PTZ00258	390	GTP-binding protein; Provisional	99.25
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.24
KOG1532|consensus	366		99.24
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.24
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.23
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.23
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.22
KOG0705|consensus	749		99.21
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.21
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.2
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.2
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.2
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.19
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.18
KOG0460|consensus	449		99.17
PRK09601	364	GTP-binding protein YchF; Reviewed	99.17
KOG0468|consensus	971		99.15
KOG3905|consensus	473		99.13
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.12
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.12
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.09
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.09
KOG3886|consensus	295		99.09
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.08
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.07
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.06
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.05
KOG1707|consensus	625		99.03
KOG0466|consensus	466		99.0
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.99
KOG0082|consensus	354		98.98
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.97
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.96
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.92
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.88
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.86
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.85
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.84
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.79
KOG1486|consensus	364		98.79
KOG0410|consensus	410		98.74
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.73
KOG0465|consensus	721		98.73
KOG0467|consensus	887		98.72
KOG2486|consensus	320		98.72
PRK00098	298	GTPase RsgA; Reviewed	98.68
KOG1143|consensus	591		98.66
KOG3887|consensus	347		98.65
PRK12288	347	GTPase RsgA; Reviewed	98.64
PRK12289	352	GTPase RsgA; Reviewed	98.62
KOG0464|consensus	753		98.6
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.58
KOG0459|consensus	501		98.55
KOG0463|consensus	641		98.53
KOG1954|consensus	532		98.5
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.49
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.49
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.46
KOG0448|consensus	749		98.43
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.41
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.38
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.38
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.37
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.34
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.34
KOG1547|consensus	336		98.32
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.3
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.3
KOG2655|consensus	366		98.28
KOG1487|consensus	358		98.27
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.25
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.22
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.21
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.2
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.19
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.18
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.17
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.14
KOG1491|consensus	391		98.11
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.11
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.11
KOG0469|consensus	842		98.11
KOG0085|consensus	359		98.1
PRK10416	318	signal recognition particle-docking protein FtsY;	98.06
PRK13796	365	GTPase YqeH; Provisional	98.03
COG1161	322	Predicted GTPases [General function prediction onl	98.02
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.01
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.01
PRK01889	356	GTPase RsgA; Reviewed	98.0
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.99
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	97.95
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	97.92
KOG0447|consensus	980		97.91
PRK12288	347	GTPase RsgA; Reviewed	97.89
PRK13695	174	putative NTPase; Provisional	97.88
cd03112	158	CobW_like The function of this protein family is u	97.87
PRK14974	336	cell division protein FtsY; Provisional	97.87
PRK12289	352	GTPase RsgA; Reviewed	97.84
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.8
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.8
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.79
COG1162	301	Predicted GTPases [General function prediction onl	97.79
KOG0099|consensus	379		97.79
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.79
PRK13796	365	GTPase YqeH; Provisional	97.75
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.65
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.63
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.6
cd03110	179	Fer4_NifH_child This protein family's function is	97.6
COG1162	301	Predicted GTPases [General function prediction onl	97.58
KOG1424|consensus	562		97.55
cd03114	148	ArgK-like The function of this protein family is u	97.53
PRK00098	298	GTPase RsgA; Reviewed	97.53
COG0523	323	Putative GTPases (G3E family) [General function pr	97.51
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.49
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.49
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.48
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.48
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.39
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.36
KOG3859|consensus	406		97.35
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.31
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.23
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.2
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.19
PRK10867	433	signal recognition particle protein; Provisional	97.19
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.19
TIGR00959	428	ffh signal recognition particle protein. This mode	97.18
KOG2485|consensus	335		97.16
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.16
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.12
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.08
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.08
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.04
COG3523	1188	IcmF Type VI protein secretion system component Va	97.04
KOG2484|consensus	435		96.97
KOG1534|consensus	273		96.93
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.89
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.78
KOG2423|consensus	572		96.73
KOG4273|consensus	418		96.67
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	96.63
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	96.62
cd02117	212	NifH_like This family contains the NifH (iron prot	96.62
cd02036	179	MinD Bacterial cell division requires the formatio	96.61
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	96.55
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.54
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	96.53
COG1161	322	Predicted GTPases [General function prediction onl	96.5
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.48
cd03111	106	CpaE_like This protein family consists of proteins	96.47
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	96.46
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.3
PRK08118	167	topology modulation protein; Reviewed	96.28
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	96.23
PRK01889	356	GTPase RsgA; Reviewed	96.2
PRK07261	171	topology modulation protein; Provisional	96.2
PRK14738	206	gmk guanylate kinase; Provisional	96.19
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.17
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.15
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.12
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.12
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.09
PRK04195	482	replication factor C large subunit; Provisional	96.04
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.03
PRK14737	186	gmk guanylate kinase; Provisional	95.99
PF05729	166	NACHT: NACHT domain	95.97
PF00005	137	ABC_tran: ABC transporter This structure is on hol	95.96
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.95
KOG1533|consensus	290		95.94
PRK14530	215	adenylate kinase; Provisional	95.94
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	95.92
TIGR00235	207	udk uridine kinase. Model contains a number of lon	95.92
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.91
KOG0780|consensus	483		95.85
PRK08233	182	hypothetical protein; Provisional	95.83
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.72
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	95.66
smart00382	148	AAA ATPases associated with a variety of cellular	95.65
cd03216	163	ABC_Carb_Monos_I This family represents the domain	95.64
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	95.64
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	95.63
PF00004	132	AAA: ATPase family associated with various cellula	95.63
cd02040	270	NifH NifH gene encodes component II (iron protein)	95.62
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	95.62
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	95.6
PRK06217	183	hypothetical protein; Validated	95.57
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	95.55
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.54
PRK05480	209	uridine/cytidine kinase; Provisional	95.53
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	95.52
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	95.46
KOG2423|consensus	572		95.42
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	95.42
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	95.39
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	95.34
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	95.32
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	95.31
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	95.31
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.3
PRK13851	344	type IV secretion system protein VirB11; Provision	95.3
PRK03839	180	putative kinase; Provisional	95.29
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	95.29
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	95.29
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	95.28
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	95.24
COG3638	258	ABC-type phosphate/phosphonate transport system, A	95.23
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.22
PRK10646	153	ADP-binding protein; Provisional	95.21
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	95.19
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	95.18
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	95.18

>KOG0084|consensus

Probab=100.00  E-value=5.1e-35  Score=235.48  Aligned_cols=169  Identities=37%  Similarity=0.639  Sum_probs=158.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      +.+||+++|+.|||||+|+.||.++.|...+..|++ |+..+.+.++++.+.+++|||+||++|+.+...||++||++|+
T Consensus         8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~   87 (205)
T KOG0084|consen    8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF   87 (205)
T ss_pred             eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence            679999999999999999999999999999999998 8888999999999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCC-EEEEeCCCCCcHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCP-FIEASAKNKTNVNEMFA  260 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~gv~~l~~  260 (286)
                      |||+++.+||+.+..|+.++.++ ..+++|.++|+||+|+. +.+.++.++++.++..++.+ ++++||+++.++++.|.
T Consensus        88 vyDiT~~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~-~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~  165 (205)
T KOG0084|consen   88 VYDITKQESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLT-EKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFL  165 (205)
T ss_pred             EEEcccHHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccH-hheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHH
Confidence            99999999999999999999996 45689999999999998 78888999999999999999 99999999999999999


Q ss_pred             HHHHHhhcCCCCc
Q psy10504        261 EIVREMNFNPEKD  273 (286)
Q Consensus       261 ~i~~~i~~~~~~~  273 (286)
                      .+...++......
T Consensus       166 ~la~~lk~~~~~~  178 (205)
T KOG0084|consen  166 TLAKELKQRKGLH  178 (205)
T ss_pred             HHHHHHHHhcccC
Confidence            9999887655433

>KOG0092|consensus

Probab=100.00  E-value=3.1e-34  Score=230.13  Aligned_cols=171  Identities=39%  Similarity=0.614  Sum_probs=158.6

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ...+||+++|+.+||||||+-|+..+.|.+...+|++ .+..+.+.+++..++|.+|||+||++|.++.+.||++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            4679999999999999999999999999998888887 677788999999999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|||+++.+||..++.|...+.+... +++-+.+||||+|+. +.+.+..++.+.+++..+..|+++||++|.|++++|.
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~-~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~  160 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLL-ERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQ  160 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhh-hcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHH
Confidence            99999999999999999999998544 778788899999998 6789999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCcC
Q psy10504        261 EIVREMNFNPEKDN  274 (286)
Q Consensus       261 ~i~~~i~~~~~~~~  274 (286)
                      .|.+.++....+..
T Consensus       161 ~Ia~~lp~~~~~~~  174 (200)
T KOG0092|consen  161 AIAEKLPCSDPQER  174 (200)
T ss_pred             HHHHhccCcccccc
Confidence            99999987665544

>KOG0094|consensus

Probab=100.00  E-value=3.2e-34  Score=230.06  Aligned_cols=174  Identities=33%  Similarity=0.542  Sum_probs=162.8

Q ss_pred             CCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCcc
Q psy10504         99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ  177 (286)
Q Consensus        99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d  177 (286)
                      ..+.+.+||+++|+.+||||||+++++.+.|...|.+|++ ++...++.+.+..+.+++|||+||++|+.+.+.|++++.
T Consensus        17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~   96 (221)
T KOG0094|consen   17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   96 (221)
T ss_pred             CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence            3455779999999999999999999999999999999998 899999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      ++|+|||++|..+|++..+|++.+...+...++-+++|+||.||. +.+++..++.+..+++++..|+++||+.|.||++
T Consensus        97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~-dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~  175 (221)
T KOG0094|consen   97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLS-DKRQVSIEEGERKAKELNAEFIETSAKAGENVKQ  175 (221)
T ss_pred             EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEccccccc-chhhhhHHHHHHHHHHhCcEEEEecccCCCCHHH
Confidence            999999999999999999999999998776678889999999999 7788999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCc
Q psy10504        258 MFAEIVREMNFNPEKD  273 (286)
Q Consensus       258 l~~~i~~~i~~~~~~~  273 (286)
                      +|..|...+++....+
T Consensus       176 lFrrIaa~l~~~~~~~  191 (221)
T KOG0094|consen  176 LFRRIAAALPGMEVLE  191 (221)
T ss_pred             HHHHHHHhccCccccc
Confidence            9999999988765433

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=1.6e-32  Score=229.40  Aligned_cols=177  Identities=31%  Similarity=0.520  Sum_probs=151.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      ..+||+++|+.+||||||+.++..+.|...+.+|+++.....+.+++..+.+++|||+|+++|..++..+++++|++|+|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            46899999999999999999999999999999999877666777899999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcC-CCEEEEeC
Q psy10504        183 YSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWG-CPFIEASA  249 (286)
Q Consensus       183 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~vSa  249 (286)
                      ||++++.+++++. .|...+...  .+++|+++|+||.|+.+..           +.+...+.+.+++..+ +++++|||
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            9999999999997 577767653  3589999999999996332           2356678888998888 68999999


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCCCcCCCceecCccccC
Q psy10504        250 KNKTNVNEMFAEIVREMNFNPEKDNASFCWCSSCSIL  286 (286)
Q Consensus       250 ~~~~gv~~l~~~i~~~i~~~~~~~~~~~~~~~~c~~~  286 (286)
                      ++|.|++++|+++++.+......+     ..+.|++|
T Consensus       160 k~g~~v~e~f~~l~~~~~~~~~~~-----~~~~c~~~  191 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVLNPTPIK-----DTKSCVLL  191 (191)
T ss_pred             CCCCCHHHHHHHHHHHHhcccccc-----CCCCceeC
Confidence            999999999999999886643222     12348775

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0078|consensus

Probab=100.00  E-value=7.9e-33  Score=225.88  Aligned_cols=167  Identities=35%  Similarity=0.573  Sum_probs=157.9

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG  178 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~  178 (286)
                      .....+||+++|+++||||+++.++..+.|...+..|++ ++...++..++..+.+++|||+||++|+.+...|++.|++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            345789999999999999999999999999999999887 8899999999999999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504        179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l  258 (286)
                      +++|||+++..+|+++..|+..+..+ ..+++|+++|+||+|+. ..+.++.+.++.++.++|++|+|+||++|.||++.
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~-~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea  165 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLE-EKRQVSKERGEALAREYGIKFFETSAKTNFNIEEA  165 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeecccccc-ccccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence            99999999999999999999999985 44599999999999998 68999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q psy10504        259 FAEIVREMNF  268 (286)
Q Consensus       259 ~~~i~~~i~~  268 (286)
                      |-.+++.+..
T Consensus       166 F~~La~~i~~  175 (207)
T KOG0078|consen  166 FLSLARDILQ  175 (207)
T ss_pred             HHHHHHHHHh
Confidence            9999998874

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=3.4e-32  Score=223.63  Aligned_cols=167  Identities=47%  Similarity=0.871  Sum_probs=151.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      .+||+++|.+|+|||||++++..+.+...+.+|.++.....+.+++..+.+++|||||+++|..++..+++.+|++++||
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            47999999999999999999999999888888988777777888998889999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |++++.+++.+..|...+......+++|+++|+||+|+. ..+.++..+.+.+++..++++++|||++|.|++++|++++
T Consensus        82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~-~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE-SQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh-hcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            999999999999988888776555689999999999997 4556778888889988999999999999999999999999


Q ss_pred             HHhhcCCC
Q psy10504        264 REMNFNPE  271 (286)
Q Consensus       264 ~~i~~~~~  271 (286)
                      +.+....+
T Consensus       161 ~~~~~~~~  168 (172)
T cd04141         161 REIRRKES  168 (172)
T ss_pred             HHHHHhcc
Confidence            98876443

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=5.4e-32  Score=225.51  Aligned_cols=163  Identities=29%  Similarity=0.478  Sum_probs=146.5

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+||+++|+.+||||||+.++..+.+...+.++.+ ++....+.+++..+.+++|||+|+++|..++..+++++|++|+
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill   84 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL   84 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence            459999999999999999999999988877776654 4445667888988999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++++.+++++..|+..+...  .++.|++||+||.|+. ..+.+...+.+.+++..++++++|||++|.|++++|++
T Consensus        85 VfD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~-~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~  161 (189)
T cd04121          85 VYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLA-FKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE  161 (189)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccch-hccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999764  3689999999999997 45667888899999999999999999999999999999


Q ss_pred             HHHHhhc
Q psy10504        262 IVREMNF  268 (286)
Q Consensus       262 i~~~i~~  268 (286)
                      +++.+..
T Consensus       162 l~~~i~~  168 (189)
T cd04121         162 LARIVLM  168 (189)
T ss_pred             HHHHHHH
Confidence            9987754

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0080|consensus

Probab=100.00  E-value=1.4e-32  Score=213.72  Aligned_cols=169  Identities=34%  Similarity=0.535  Sum_probs=159.8

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ...+||+++|.+|+|||||+.+|..+.|.+..+.|++ ++..+.+.+++..+++.+|||+||++|+.+.+.||+.+.++|
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            4679999999999999999999999999988888776 888899999999999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|||++.+++|..+..|+.++..+...+++-.++|+||+|.. .++.++.++...+++.+++.|+++||++.+|+...|+
T Consensus        89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke-s~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fe  167 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE-SERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFE  167 (209)
T ss_pred             EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch-hcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHH
Confidence            999999999999999999999999888899999999999987 6889999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCC
Q psy10504        261 EIVREMNFNPE  271 (286)
Q Consensus       261 ~i~~~i~~~~~  271 (286)
                      .++.+|.+.|.
T Consensus       168 elveKIi~tp~  178 (209)
T KOG0080|consen  168 ELVEKIIETPS  178 (209)
T ss_pred             HHHHHHhcCcc
Confidence            99999877653

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=8.1e-32  Score=222.03  Aligned_cols=162  Identities=30%  Similarity=0.536  Sum_probs=146.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      +||+++|++++|||||+.++..+.|...+.+|+++.....+.+++..+.+++|||+|+++|..++..+++++|++|+|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            68999999999999999999999999999999987777778889999999999999999999999999999999999999


Q ss_pred             CCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC---------CCCCHHHHHHHHHhcCC-CEEEEeCCCCC
Q psy10504        185 LTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASHQ---------REVPTLDGQALAQSWGC-PFIEASAKNKT  253 (286)
Q Consensus       185 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~  253 (286)
                      ++++.+++++ ..|+..+....  ++.|+++|+||+|+.+..         +.+..++.+.+++..++ ++++|||++|.
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            9999999998 68999887643  589999999999996322         34778889999999997 59999999999


Q ss_pred             cHHHHHHHHHHHhhc
Q psy10504        254 NVNEMFAEIVREMNF  268 (286)
Q Consensus       254 gv~~l~~~i~~~i~~  268 (286)
                      |++++|+.+++.+.+
T Consensus       160 nV~~~F~~~~~~~~~  174 (176)
T cd04133         160 NVKAVFDAAIKVVLQ  174 (176)
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999997754

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=9.5e-32  Score=226.15  Aligned_cols=162  Identities=36%  Similarity=0.624  Sum_probs=145.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +.|+++|+.|||||||++++..+.|...+.+|++ ++....+.+++..+.+++|||+|+++|+.++..|++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            3689999999999999999999999988888876 556677888998899999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc-CCCEEEEeCCCCCcHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      |++++.+++++..|+..+... ..+++|+++|+||+|+. ..+.+...+.+.+++.. ++.+++|||++|.|++++|+++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~-~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l  158 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCE-TDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL  158 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccc-cccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence            999999999999999887664 34579999999999997 46667777888888775 7899999999999999999999


Q ss_pred             HHHhhc
Q psy10504        263 VREMNF  268 (286)
Q Consensus       263 ~~~i~~  268 (286)
                      ++.+..
T Consensus       159 ~~~~~~  164 (202)
T cd04120         159 VDDILK  164 (202)
T ss_pred             HHHHHH
Confidence            998754

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=1.3e-31  Score=222.06  Aligned_cols=163  Identities=28%  Similarity=0.466  Sum_probs=147.6

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ...+||+++|++++|||||++++..+.+...+.||+++.....+.+++..+.+.+|||+|+++|..++..+++++|++++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il   82 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   82 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence            35689999999999999999999999999999999987777788899999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcCC-CEEEEe
Q psy10504        182 VYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWGC-PFIEAS  248 (286)
Q Consensus       182 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~vS  248 (286)
                      |||++++.+++++ ..|...+...  .++.|+++|+||+|+.+.           .+.+..++++.+++..++ +|++||
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  160 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  160 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            9999999999997 7899888774  358999999999999632           345888999999999995 899999


Q ss_pred             CCCCCc-HHHHHHHHHHHh
Q psy10504        249 AKNKTN-VNEMFAEIVREM  266 (286)
Q Consensus       249 a~~~~g-v~~l~~~i~~~i  266 (286)
                      |++|.| ++++|+.+++.+
T Consensus       161 Ak~~~n~v~~~F~~~~~~~  179 (182)
T cd04172         161 ALQSENSVRDIFHVATLAC  179 (182)
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence            999998 999999998854

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=1.3e-31  Score=217.08  Aligned_cols=161  Identities=67%  Similarity=1.102  Sum_probs=145.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      +||+++|++|||||||++++..+.+...+.+|+++.....+..++..+.+.+|||||+++|..++..+++++|++++|||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999999998888888887777788889988889999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504        185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR  264 (286)
Q Consensus       185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~  264 (286)
                      ++++.+++.+..|+..+......+++|+++|+||+|+. ..+.....+...+++.++.+++++||++|.|++++|+++++
T Consensus        82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE-DERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999998876656689999999999997 34455666677788888899999999999999999999987


Q ss_pred             Hh
Q psy10504        265 EM  266 (286)
Q Consensus       265 ~i  266 (286)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            64

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1.4e-31  Score=217.62  Aligned_cols=163  Identities=65%  Similarity=1.069  Sum_probs=146.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      ++||+++|.+|||||||++++..+.+...+.+|+++.....+..++..+.+.+|||||+++|..++..+++++|++++||
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            37999999999999999999999999888889988777778888998888999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |++++.+++++..|+..+......++.|+++|+||+|+. ..+.....+.+.+++..+++++++||++|.|++++|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE-DERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch-hccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            999999999999999998876566789999999999997 3444556667778888889999999999999999999999


Q ss_pred             HHhh
Q psy10504        264 REMN  267 (286)
Q Consensus       264 ~~i~  267 (286)
                      +.+.
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            8764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1.7e-31  Score=222.66  Aligned_cols=168  Identities=52%  Similarity=0.920  Sum_probs=150.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      +..+||+++|++|+|||||++++..+.+...+.+|.+......+.+++..+.+.+|||||+++|..++..+++.+|++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            35699999999999999999999999998888888887777788889999899999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++++.+++.+..|+..+......+++|+++|+||+|+. ..+.+...+...+++..+++++++||++|.|++++|++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~-~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD-SERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-cccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            99999999999999999988876555689999999999986 44555666777788888899999999999999999999


Q ss_pred             HHHHhhcCC
Q psy10504        262 IVREMNFNP  270 (286)
Q Consensus       262 i~~~i~~~~  270 (286)
                      +++.+....
T Consensus       162 l~~~l~~~~  170 (189)
T PTZ00369        162 LVREIRKYL  170 (189)
T ss_pred             HHHHHHHHh
Confidence            998876543

>KOG0098|consensus

Probab=100.00  E-value=3.9e-32  Score=216.41  Aligned_cols=164  Identities=34%  Similarity=0.534  Sum_probs=154.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+|++++|+.|||||+|+.++++..|.+.+..|++ ++....+.+++.++++++|||+||+.|++.+..||+.+.+++|
T Consensus         5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL   84 (216)
T KOG0098|consen    5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL   84 (216)
T ss_pred             ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence            568999999999999999999999999999998887 8888999999999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++..++|..+..|+.++..+ ..++.-+++++||+|+. ..+.++.++.+.++++.|..++++||++++|+++.|..
T Consensus        85 Vydit~r~sF~hL~~wL~D~rq~-~~~NmvImLiGNKsDL~-~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen   85 VYDITRRESFNHLTSWLEDARQH-SNENMVIMLIGNKSDLE-ARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             EEEccchhhHHHHHHHHHHHHHh-cCCCcEEEEEcchhhhh-ccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence            99999999999999999999985 45799999999999998 77899999999999999999999999999999999998


Q ss_pred             HHHHhhc
Q psy10504        262 IVREMNF  268 (286)
Q Consensus       262 i~~~i~~  268 (286)
                      +...+-+
T Consensus       163 ta~~Iy~  169 (216)
T KOG0098|consen  163 TAKEIYR  169 (216)
T ss_pred             HHHHHHH
Confidence            8876643

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.5e-31  Score=223.21  Aligned_cols=180  Identities=48%  Similarity=0.818  Sum_probs=152.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL  185 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~  185 (286)
                      ||+++|.+|||||||+++|..+.+...+.+|+++.......+++..+.+++|||||+++|..++..+++.+|++++|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            58999999999999999999999988888888877777778888888899999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHhC--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        186 TNHHTFQDIKQMKELITRVKG--SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       186 ~~~~s~~~~~~~~~~i~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      +++.+++.+..|+..+.....  .+++|+++|+||+|+. ..+.+...+...++...+++++++||++|.|++++|++++
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV-YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc-ccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999988876543  3578999999999997 4455666677788888889999999999999999999999


Q ss_pred             HHhhcCCCCc--------CCCceecCccccC
Q psy10504        264 REMNFNPEKD--------NASFCWCSSCSIL  286 (286)
Q Consensus       264 ~~i~~~~~~~--------~~~~~~~~~c~~~  286 (286)
                      +.+.......        .........|++|
T Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (190)
T cd04144         160 RALRQQRQGGQGPKGGPTKKKEKKKRKCVIM  190 (190)
T ss_pred             HHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence            9865433222        2223444667765

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04131 Rnd Rnd subfamily

Probab=99.98  E-value=4.6e-31  Score=218.07  Aligned_cols=162  Identities=27%  Similarity=0.454  Sum_probs=145.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      ++||+++|++|+|||||++++..+.+...+.+|+++.....+.+++..+.+++|||+|++.|..++..+++++|++++||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            37999999999999999999999999999999988777777888999999999999999999999999999999999999


Q ss_pred             ECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcCC-CEEEEeCC
Q psy10504        184 SLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWGC-PFIEASAK  250 (286)
Q Consensus       184 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~vSa~  250 (286)
                      |++++.+++++ ..|...+...  .++.|+++|+||+|+.+.           .+.+..++.+.+++..++ +|++|||+
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            99999999996 7898888774  358999999999999631           245788899999999996 79999999


Q ss_pred             CCCc-HHHHHHHHHHHhh
Q psy10504        251 NKTN-VNEMFAEIVREMN  267 (286)
Q Consensus       251 ~~~g-v~~l~~~i~~~i~  267 (286)
                      +|+| ++++|+.+++...
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999998543

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.98  E-value=1.1e-30  Score=223.53  Aligned_cols=165  Identities=24%  Similarity=0.389  Sum_probs=148.2

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ...+||+++|+++||||||+++|..+.|...+.+|++......+.+++..+.+.+|||+|++.|..++..+++++|++++
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl   90 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL   90 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence            35689999999999999999999999999999999887777778889999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcCC-CEEEEe
Q psy10504        182 VYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWGC-PFIEAS  248 (286)
Q Consensus       182 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~vS  248 (286)
                      |||++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+.           .+.+..++++.+++..++ +|++||
T Consensus        91 VyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS  168 (232)
T cd04174          91 CFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS  168 (232)
T ss_pred             EEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence            9999999999984 78999888643  57899999999999632           356788899999999998 699999


Q ss_pred             CCCCC-cHHHHHHHHHHHhhc
Q psy10504        249 AKNKT-NVNEMFAEIVREMNF  268 (286)
Q Consensus       249 a~~~~-gv~~l~~~i~~~i~~  268 (286)
                      |++|. |++++|+.++..+.+
T Consensus       169 Aktg~~~V~e~F~~~~~~~~~  189 (232)
T cd04174         169 AFTSEKSIHSIFRSASLLCLN  189 (232)
T ss_pred             CCcCCcCHHHHHHHHHHHHHH
Confidence            99998 899999999887654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04176 Rap2 Rap2 subgroup

Probab=99.98  E-value=1e-30  Score=212.22  Aligned_cols=162  Identities=78%  Similarity=1.216  Sum_probs=145.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      ++||+++|++|+|||||++++..+.+...+.+|..+.....+..++..+.+++|||||+++|..++..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            37999999999999999999999999888888887777778888998888999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |++++.+++++..|+..+.......++|+++|+||+|+. ..+.+...+...+++..+++++++||++|.|++++|++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE-SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch-hcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999988876555689999999999996 3445556667778888889999999999999999999998


Q ss_pred             HHh
Q psy10504        264 REM  266 (286)
Q Consensus       264 ~~i  266 (286)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            765

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04134 Rho3 Rho3 subfamily

Probab=99.98  E-value=1.1e-30  Score=217.79  Aligned_cols=175  Identities=31%  Similarity=0.454  Sum_probs=147.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL  185 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~  185 (286)
                      ||+++|++|+|||||++++.++.+...+.+|..+.....+..++..+.+++|||+|+++|..++..+++.+|++++|||+
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv   81 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV   81 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence            79999999999999999999999988888888776666677788888899999999999999999999999999999999


Q ss_pred             CCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC-----------CCCHHHHHHHHHhcC-CCEEEEeCCCC
Q psy10504        186 TNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQR-----------EVPTLDGQALAQSWG-CPFIEASAKNK  252 (286)
Q Consensus       186 ~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~~-~~~~~vSa~~~  252 (286)
                      +++.+++.+. .|+..+...  .++.|+++|+||+|+.+...           .+...+...+++..+ +++++|||++|
T Consensus        82 ~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  159 (189)
T cd04134          82 DSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN  159 (189)
T ss_pred             CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            9999999986 588777753  35899999999999973321           244556667777776 78999999999


Q ss_pred             CcHHHHHHHHHHHhhcCCCCcCCCceecCccccC
Q psy10504        253 TNVNEMFAEIVREMNFNPEKDNASFCWCSSCSIL  286 (286)
Q Consensus       253 ~gv~~l~~~i~~~i~~~~~~~~~~~~~~~~c~~~  286 (286)
                      .|++++|+++++.+.....+..    ..+-|.||
T Consensus       160 ~~v~e~f~~l~~~~~~~~~~~~----~~~~~~~~  189 (189)
T cd04134         160 RGVNEAFTEAARVALNVRPPHP----HSSACTIA  189 (189)
T ss_pred             CCHHHHHHHHHHHHhcccccCc----CCCcceeC
Confidence            9999999999999876554333    44667776

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0394|consensus

Probab=99.97  E-value=4.1e-31  Score=210.23  Aligned_cols=169  Identities=35%  Similarity=0.599  Sum_probs=155.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .-+||+++|++|+|||||++++...+|...+..|++ ++..+.+.+++..+.+++|||+||++|.++.-.+|+++|..++
T Consensus         8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl   87 (210)
T KOG0394|consen    8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL   87 (210)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence            458999999999999999999999999999999988 8889999999999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCC---CCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGS---ERVPILLVANKLDLAS-HQREVPTLDGQALAQSWG-CPFIEASAKNKTNVN  256 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~  256 (286)
                      |||++++.+++.+..|..++......   ..-|+||++||+|+.+ ..+.++...++..++..| +||+++|||...|++
T Consensus        88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~  167 (210)
T KOG0394|consen   88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVD  167 (210)
T ss_pred             EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHH
Confidence            99999999999999999999876532   3579999999999985 348899999999999888 999999999999999


Q ss_pred             HHHHHHHHHhhcCCC
Q psy10504        257 EMFAEIVREMNFNPE  271 (286)
Q Consensus       257 ~l~~~i~~~i~~~~~  271 (286)
                      +.|+.+.+.+.+...
T Consensus       168 ~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  168 EAFEEIARRALANED  182 (210)
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999877664

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.97  E-value=1.3e-30  Score=211.72  Aligned_cols=162  Identities=57%  Similarity=1.043  Sum_probs=146.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      +||+++|++|||||||++++.++.+...+.+++++........++..+.+.+|||||++++..++..+++.+|++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            48999999999999999999999998888888887777788888888889999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504        185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR  264 (286)
Q Consensus       185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~  264 (286)
                      ++++.+++.+..|...+.......++|+++|+||+|+. ..+.....+...+++..+.+++++||++|.|++++|++|++
T Consensus        81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE-SERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999999999888776655689999999999997 34555667777888888899999999999999999999998


Q ss_pred             Hhh
Q psy10504        265 EMN  267 (286)
Q Consensus       265 ~i~  267 (286)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04122 Rab14 Rab14 subfamily

Probab=99.97  E-value=1.9e-30  Score=211.61  Aligned_cols=163  Identities=33%  Similarity=0.483  Sum_probs=144.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccc-eEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      .+||+++|++|+|||||++++..+.+...+++|++. +....+..++..+.+.+|||||+++|..++..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            379999999999999999999999998888887763 3345677888888999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      ||++++.+++.+..|+..+... ..++.|+++|+||+|+. ..+.....+...+++..++++++|||++|.|++++|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l  159 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLE-AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLET  159 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccc-cccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999888664 34578999999999997 455667778888888889999999999999999999999


Q ss_pred             HHHhhc
Q psy10504        263 VREMNF  268 (286)
Q Consensus       263 ~~~i~~  268 (286)
                      ++.+.+
T Consensus       160 ~~~~~~  165 (166)
T cd04122         160 AKKIYQ  165 (166)
T ss_pred             HHHHhh
Confidence            987743

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.97  E-value=1.5e-30  Score=214.47  Aligned_cols=161  Identities=29%  Similarity=0.531  Sum_probs=142.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      .+||+++|++|+|||||++++..+.+...+.||+++.....+..++..+.+++|||+|+++|..++..+++++|++|+||
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            37999999999999999999999999989999998777767788898899999999999999999999999999999999


Q ss_pred             ECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcC-CCEEEEeCC
Q psy10504        184 SLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWG-CPFIEASAK  250 (286)
Q Consensus       184 d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~vSa~  250 (286)
                      |++++.+++++. .|...+...  .+++|+++|+||+|+.+.           .+.+..++++.+++..+ +.+++|||+
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            999999999997 487777653  357999999999998633           14567778888888887 689999999


Q ss_pred             CCCcHHHHHHHHHHHh
Q psy10504        251 NKTNVNEMFAEIVREM  266 (286)
Q Consensus       251 ~~~gv~~l~~~i~~~i  266 (286)
                      +|.|++++|+.++..+
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.97  E-value=2.4e-30  Score=209.06  Aligned_cols=161  Identities=51%  Similarity=0.936  Sum_probs=144.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      .+||+++|++|+|||||++++.++.+...+.+|.++.....+.+++..+.+.+|||||+++|..++..+++.+|++++||
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            37999999999999999999999999888889888777777888888888999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |+++..+++++..|+..+.......++|+++|+||+|+.+  +.....+...+.+..+++++++||++|.|++++|++++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc--ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999998888765556899999999999973  44556667778888889999999999999999999998


Q ss_pred             HHh
Q psy10504        264 REM  266 (286)
Q Consensus       264 ~~i  266 (286)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.97  E-value=2.8e-30  Score=209.45  Aligned_cols=162  Identities=47%  Similarity=0.858  Sum_probs=144.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      .+||+++|++|+|||||++++.++.+...+.+++++.......+++..+.+.+|||||++++..++..+++.+|++++||
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            48999999999999999999999988888888888777777788888888999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |++++.+++.+..|+..+.......+.|+++|+||+|+. ..+.....+...+++..+++++++||++|.|++++|++|+
T Consensus        82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE-HQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc-ccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            999999999999999988876556689999999999997 3444566677788888889999999999999999999998


Q ss_pred             HHh
Q psy10504        264 REM  266 (286)
Q Consensus       264 ~~i  266 (286)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.97  E-value=4.5e-30  Score=218.67  Aligned_cols=162  Identities=23%  Similarity=0.393  Sum_probs=142.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      +||+++|++|+|||||+++|..+.+...+.||+.+.....+.+++..+.+.+|||+|++.|..++..+++++|++++|||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd   81 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD   81 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence            79999999999999999999999999999999987777788899999999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHH-HHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcCC-CEEEEeCCC
Q psy10504        185 LTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWGC-PFIEASAKN  251 (286)
Q Consensus       185 ~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~vSa~~  251 (286)
                      ++++++++.+.. |...+..  ..++.|+++|+||+|+.+..           ..+..++.+.+++..++ +|++|||++
T Consensus        82 is~~~Sf~~i~~~w~~~~~~--~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          82 ISRPETLDSVLKKWQGETQE--FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             CCCHHHHHHHHHHHHHHHHh--hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            999999999954 5555443  34689999999999996321           13677789999999995 899999999


Q ss_pred             CCc-HHHHHHHHHHHhhc
Q psy10504        252 KTN-VNEMFAEIVREMNF  268 (286)
Q Consensus       252 ~~g-v~~l~~~i~~~i~~  268 (286)
                      +.+ ++++|+........
T Consensus       160 ~~~~V~~~F~~~~~~~~~  177 (222)
T cd04173         160 SERSVRDVFHVATVASLG  177 (222)
T ss_pred             CCcCHHHHHHHHHHHHHh
Confidence            885 99999999886543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.97  E-value=3.1e-30  Score=217.09  Aligned_cols=165  Identities=32%  Similarity=0.500  Sum_probs=144.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEEC-CeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD-KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +||+++|++|||||||+++|.++.+...+.+|.+ ++....+.++ +..+.+.+|||||+++|..++..+++++|++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            5899999999999999999999998888888876 4445667777 7788899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHh---CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVK---GSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEM  258 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~~l  258 (286)
                      ||++++.+++.+..|+..+....   ...++|+++|+||+|+. ..+.....+.+.+++..+ .+++++||++|.|++++
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~  159 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK-KRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA  159 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc-cccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence            99999999999999988876532   23578999999999997 345667788889999888 78999999999999999


Q ss_pred             HHHHHHHhhcCC
Q psy10504        259 FAEIVREMNFNP  270 (286)
Q Consensus       259 ~~~i~~~i~~~~  270 (286)
                      |++|++.+.+..
T Consensus       160 f~~l~~~l~~~~  171 (201)
T cd04107         160 MRFLVKNILAND  171 (201)
T ss_pred             HHHHHHHHHHhc
Confidence            999999876543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.97  E-value=3.8e-30  Score=213.79  Aligned_cols=180  Identities=28%  Similarity=0.440  Sum_probs=148.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEEC-CeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVD-KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +||+++|++|+|||||++++.++.+...+.++++......+... +..+.+.+|||||+++|..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            48999999999999999999999998888888776655556665 67788999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHH-HHHHHHHHhCCCCCcEEEEEeCCCCCCCC---CCCCHHHHHHHHHhcCC-CEEEEeCCCCCcHHHH
Q psy10504        184 SLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQ---REVPTLDGQALAQSWGC-PFIEASAKNKTNVNEM  258 (286)
Q Consensus       184 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~l  258 (286)
                      |++++.+++++.. |+..+...  .+++|+++|+||+|+....   +.+...+.+.++...+. +++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999864 77766653  3589999999999996322   34567788888888887 8999999999999999


Q ss_pred             HHHHHHHhhcCCCC-cCCCceecCccccC
Q psy10504        259 FAEIVREMNFNPEK-DNASFCWCSSCSIL  286 (286)
Q Consensus       259 ~~~i~~~i~~~~~~-~~~~~~~~~~c~~~  286 (286)
                      |+.+++.+...... ..........|++|
T Consensus       159 f~~l~~~~~~~~~~~~~~~~~~~~~c~~~  187 (187)
T cd04132         159 FDTAIEEALKKEGKAIFKKKKKKRKCVVL  187 (187)
T ss_pred             HHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence            99999988765433 11222334567766

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04127 Rab27A Rab27a subfamily

Probab=99.97  E-value=5.1e-30  Score=211.58  Aligned_cols=165  Identities=30%  Similarity=0.507  Sum_probs=143.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEEC----------CeEEEEEEEeCCCcccchhhhhh
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD----------KAPCVLEILDTAGTEQFASMRDL  171 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~----------~~~~~l~l~DtpG~~~~~~~~~~  171 (286)
                      +.+||+++|++|+|||||++++..+.+...+.+|++ ++....+.+.          +..+.+.+|||||+++|..++..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            458999999999999999999999999888888776 3333444433          45678999999999999999999


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504        172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN  251 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  251 (286)
                      +++++|++++|||++++.+++++..|+..+......++.|+++|+||+|+. ..+.+...+...+++..+++++++||++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE-DQRQVSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch-hcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            999999999999999999999999999998876555688999999999997 4455667778889999999999999999


Q ss_pred             CCcHHHHHHHHHHHhhc
Q psy10504        252 KTNVNEMFAEIVREMNF  268 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i~~  268 (286)
                      |.|++++|++|++.+.+
T Consensus       162 ~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         162 GTNVEKAVERLLDLVMK  178 (180)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999987654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0079|consensus

Probab=99.97  E-value=3.1e-31  Score=203.54  Aligned_cols=162  Identities=36%  Similarity=0.580  Sum_probs=151.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      -++.+|+|++|+|||||+.+|..+.|...|..|++ ++...++.++|..+.+++|||+|+++|+.+...|++..+++++|
T Consensus         8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV   87 (198)
T KOG0079|consen    8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   87 (198)
T ss_pred             HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence            36789999999999999999999999999988887 88889999999999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      ||+++.+||.+++.|++.+..  .++.+|-++|+||.|.+ ..+.+..++++.++...++.+|++||++..|++..|..|
T Consensus        88 YDVTn~ESF~Nv~rWLeei~~--ncdsv~~vLVGNK~d~~-~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~ci  164 (198)
T KOG0079|consen   88 YDVTNGESFNNVKRWLEEIRN--NCDSVPKVLVGNKNDDP-ERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCI  164 (198)
T ss_pred             EECcchhhhHhHHHHHHHHHh--cCccccceecccCCCCc-cceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHH
Confidence            999999999999999999987  45689999999999998 677888899999999999999999999999999999998


Q ss_pred             HHHhhc
Q psy10504        263 VREMNF  268 (286)
Q Consensus       263 ~~~i~~  268 (286)
                      .+...+
T Consensus       165 t~qvl~  170 (198)
T KOG0079|consen  165 TKQVLQ  170 (198)
T ss_pred             HHHHHH
Confidence            886543

>cd01865 Rab3 Rab3 subfamily

Probab=99.97  E-value=1e-29  Score=207.20  Aligned_cols=162  Identities=29%  Similarity=0.552  Sum_probs=141.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +||+++|++|+|||||++++.++.+...+.++.+ ++....+..++..+.+.+|||||++++..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            7999999999999999999999999888877776 344455666777788999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |++++.+++.+..|+..+.... .++.|+++|+||+|+. ..+.....+...+++..+++++++||++|.|++++|++++
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDME-DERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccC-cccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999887643 3478999999999997 4445566777778888889999999999999999999999


Q ss_pred             HHhhc
Q psy10504        264 REMNF  268 (286)
Q Consensus       264 ~~i~~  268 (286)
                      +.+.+
T Consensus       160 ~~~~~  164 (165)
T cd01865         160 DIICD  164 (165)
T ss_pred             HHHHh
Confidence            87754

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04140 ARHI_like ARHI subfamily

Probab=99.97  E-value=8.1e-30  Score=207.74  Aligned_cols=160  Identities=48%  Similarity=0.865  Sum_probs=141.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      +||+++|++|+|||||++++.++.+...+.++........+..++..+.+.+|||||+++|..++..+++.+|++++|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            78999999999999999999999998888888876666667778888889999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHhC--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        185 LTNHHTFQDIKQMKELITRVKG--SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       185 ~~~~~s~~~~~~~~~~i~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      ++++.+++.+..|+..+.....  .+++|+++|+||+|+. ..+.+...+...++..+++++++|||++|.|++++|++|
T Consensus        82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES-HKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc-ccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            9999999999999888876542  2579999999999997 345566667777888888999999999999999999999


Q ss_pred             HHH
Q psy10504        263 VRE  265 (286)
Q Consensus       263 ~~~  265 (286)
                      +..
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.97  E-value=7e-30  Score=210.25  Aligned_cols=160  Identities=30%  Similarity=0.554  Sum_probs=141.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      .+||+++|++|||||||+.++..+.+...+.+|+.+.....+..++..+.+.+|||||+++|..++..+++++|++|+||
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            37999999999999999999999999999999988777777888898899999999999999999999999999999999


Q ss_pred             ECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcC-CCEEEEeCC
Q psy10504        184 SLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWG-CPFIEASAK  250 (286)
Q Consensus       184 d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~vSa~  250 (286)
                      |++++.+++++. .|+..+...  .+++|+++|+||+|+.+..           +.+...+.+.+++.++ +++++|||+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  158 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence            999999999996 577777653  3589999999999996321           3467788888999888 489999999


Q ss_pred             CCCcHHHHHHHHHHH
Q psy10504        251 NKTNVNEMFAEIVRE  265 (286)
Q Consensus       251 ~~~gv~~l~~~i~~~  265 (286)
                      +|.|++++|+.+++.
T Consensus       159 ~~~~i~~~f~~l~~~  173 (174)
T cd01871         159 TQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.97  E-value=1.3e-29  Score=206.92  Aligned_cols=164  Identities=35%  Similarity=0.605  Sum_probs=144.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+||+++|++|+|||||++++.++.+...+.++.+ ++....+..++..+.+++|||||++.+..++..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            358999999999999999999999999888888776 3445667788888889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++++.+++.+..|+..+... ...+.|+++|+||+|+. +.+.....+...+++..+++++++||++|.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  159 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDME-EKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFT  159 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999988774 34579999999999998 34555667778888888999999999999999999999


Q ss_pred             HHHHhhc
Q psy10504        262 IVREMNF  268 (286)
Q Consensus       262 i~~~i~~  268 (286)
                      +++.+..
T Consensus       160 i~~~~~~  166 (167)
T cd01867         160 LAKDIKK  166 (167)
T ss_pred             HHHHHHh
Confidence            9998754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.97  E-value=1.2e-29  Score=206.12  Aligned_cols=162  Identities=30%  Similarity=0.568  Sum_probs=142.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +||+++|++|||||||+++++++.+...+.++.+ ++....+..++..+.+++|||||++++..++..+++.+|++|+|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999888888776 344566778888899999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCC----CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGS----ERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~----~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      |++++.+++.+..|+..+......    .+.|+++|+||+|+. ..+.....+.+.++...+++++++||++|.|++++|
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  159 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT-KHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF  159 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc-cccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            999999999999999998875432    578999999999997 345566777777888888999999999999999999


Q ss_pred             HHHHHHhh
Q psy10504        260 AEIVREMN  267 (286)
Q Consensus       260 ~~i~~~i~  267 (286)
                      ++|++.+.
T Consensus       160 ~~l~~~l~  167 (168)
T cd04119         160 QTLFSSIV  167 (168)
T ss_pred             HHHHHHHh
Confidence            99998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04109 Rab28 Rab28 subfamily

Probab=99.97  E-value=1.4e-29  Score=215.39  Aligned_cols=163  Identities=31%  Similarity=0.486  Sum_probs=143.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECC-eEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDK-APCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +||+++|++|||||||+++|.++.+...+.+|.+ ++....+.+++ ..+.+.+|||||++.+..++..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888888886 55566677754 567899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhC--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKG--SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      ||++++.+++.+..|+..+.....  ..+.|+++|+||+|+. ..+.+...+...+++.++++++++||++|+|++++|+
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~-~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~  159 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE-HNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ  159 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            999999999999999999887543  2357899999999997 4566677788889999999999999999999999999


Q ss_pred             HHHHHhhc
Q psy10504        261 EIVREMNF  268 (286)
Q Consensus       261 ~i~~~i~~  268 (286)
                      ++++.+..
T Consensus       160 ~l~~~l~~  167 (215)
T cd04109         160 QLAAELLG  167 (215)
T ss_pred             HHHHHHHh
Confidence            99998764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.97  E-value=1.6e-29  Score=207.41  Aligned_cols=164  Identities=29%  Similarity=0.420  Sum_probs=141.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      ||+++|++|+|||||++++.++.+...+.+|++ ++....+.+++..+.+++|||||+++|..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            799999999999999999999999999988886 4444667788888899999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR-EVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      ++++.+++.+..|+..+.........|+++|+||+|+.+... .....+...+++..+.+++++||++|.|++++|+.++
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999887654334578999999999863322 2345566677788889999999999999999999999


Q ss_pred             HHhhcC
Q psy10504        264 REMNFN  269 (286)
Q Consensus       264 ~~i~~~  269 (286)
                      +.+.+.
T Consensus       162 ~~~~~~  167 (170)
T cd04108         162 ALTFEL  167 (170)
T ss_pred             HHHHHc
Confidence            988664

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.97  E-value=2.1e-29  Score=205.26  Aligned_cols=162  Identities=40%  Similarity=0.663  Sum_probs=143.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      .+||+++|++|+|||||++++.++.+...+.++.+ ++....+..++..+.+++|||||++++..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            47999999999999999999999988877777765 45556677888888899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      ||++++.+++++..|+..+.... .++.|+++|+||+|+. ..+.+...+...+++..+++++++||++|.|++++|++|
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  159 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLT-DKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM  159 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcc-cccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence            99999999999999999887743 3578999999999987 445566777888888899999999999999999999999


Q ss_pred             HHHhh
Q psy10504        263 VREMN  267 (286)
Q Consensus       263 ~~~i~  267 (286)
                      ++.+.
T Consensus       160 ~~~~~  164 (166)
T cd01869         160 AREIK  164 (166)
T ss_pred             HHHHH
Confidence            99875

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04125 RabA_like RabA-like subfamily

Probab=99.97  E-value=1.9e-29  Score=209.95  Aligned_cols=179  Identities=34%  Similarity=0.526  Sum_probs=149.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +||+++|++|||||||++++.++.+...+.+|.+ ++....+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            5899999999999999999999998877777765 344566778888888999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |++++.+++.+..|+..+.... ..+.|+++|+||+|+. ..+.+...+...++...+++++++||++|.|++++|++++
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~  158 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLV-NNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV  158 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCc-ccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999888753 3468999999999987 4555667777788888889999999999999999999999


Q ss_pred             HHhhcCCCCc-------CCCceecCcccc
Q psy10504        264 REMNFNPEKD-------NASFCWCSSCSI  285 (286)
Q Consensus       264 ~~i~~~~~~~-------~~~~~~~~~c~~  285 (286)
                      +.+.....+.       ........+|++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (188)
T cd04125         159 KLIIKRLEEQELSPKNIKQQFKKKNNCFI  187 (188)
T ss_pred             HHHHHHhhcCcCCccccccccccccCccc
Confidence            9876533222       223344566775

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04128 Spg1 Spg1p

Probab=99.97  E-value=2.1e-29  Score=208.86  Aligned_cols=165  Identities=26%  Similarity=0.433  Sum_probs=140.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +||+++|+.|+|||||++++..+.+...+.+|.+ ++....+..++..+.+.+|||+|+++|..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            5899999999999999999999999988888886 455567888998899999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC----CCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH----QREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      |++++.+++++..|+..+.... ....| ++|+||+|+..+    .+.....+.+.+++..++++++|||++|.|++++|
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf  158 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIF  158 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999887753 23567 678999999521    11122355677888888999999999999999999


Q ss_pred             HHHHHHhhcCCC
Q psy10504        260 AEIVREMNFNPE  271 (286)
Q Consensus       260 ~~i~~~i~~~~~  271 (286)
                      +++++.+.+.+.
T Consensus       159 ~~l~~~l~~~~~  170 (182)
T cd04128         159 KIVLAKAFDLPL  170 (182)
T ss_pred             HHHHHHHHhcCC
Confidence            999998876543

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04117 Rab15 Rab15 subfamily

Probab=99.97  E-value=2.8e-29  Score=203.91  Aligned_cols=159  Identities=31%  Similarity=0.549  Sum_probs=141.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +||+++|++|+|||||++++..+.+...+.+|.+ +.....+..++..+.+.+|||+|++++..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            4899999999999999999999999888888876 344567788888888999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |++++.+++.+..|+..+.... ..+.|+++|+||.|+. ..+.+...+...+++..+++++++||++|.|++++|++|+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~  158 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEE-QKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLT  158 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999887643 3478999999999997 4566677888899999999999999999999999999998


Q ss_pred             HH
Q psy10504        264 RE  265 (286)
Q Consensus       264 ~~  265 (286)
                      +.
T Consensus       159 ~~  160 (161)
T cd04117         159 EL  160 (161)
T ss_pred             hh
Confidence            64

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>KOG0087|consensus

Probab=99.97  E-value=6.9e-30  Score=207.84  Aligned_cols=164  Identities=34%  Similarity=0.549  Sum_probs=154.5

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .-+||+++|++++|||-|+.++..+.|.-...+|++ ++.+..+.++++.++.++|||+||++|+++...||+.|.++++
T Consensus        13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll   92 (222)
T KOG0087|consen   13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   92 (222)
T ss_pred             eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence            679999999999999999999999999999999988 7788889999999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++...+|+++..|+.+++.+ ..+++++++|+||+||. +.+.++.++...+++..+..++++||+++.|++++|+.
T Consensus        93 VYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~-~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~  170 (222)
T KOG0087|consen   93 VYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLN-HLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFER  170 (222)
T ss_pred             EEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhh-hccccchhhhHhHHHhcCceEEEecccccccHHHHHHH
Confidence            99999999999999999999985 56799999999999998 68889999999999999999999999999999999998


Q ss_pred             HHHHhhc
Q psy10504        262 IVREMNF  268 (286)
Q Consensus       262 i~~~i~~  268 (286)
                      ++..|..
T Consensus       171 ~l~~I~~  177 (222)
T KOG0087|consen  171 VLTEIYK  177 (222)
T ss_pred             HHHHHHH
Confidence            8886543

>cd04177 RSR1 RSR1 subgroup

Probab=99.97  E-value=5.4e-29  Score=203.48  Aligned_cols=162  Identities=56%  Similarity=1.004  Sum_probs=144.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      ++||+++|.+|+|||||++++.++.+...+.+++++.....+..++..+.+.+|||||+++|..++..+++.++++++||
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            37899999999999999999999999888888888777777888888888999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      |++++.+++.+..|...+.......++|+++++||.|+. ..+....++...+++.++ ++++++||+++.|++++|+++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE-DDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc-ccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            999999999999998888775555689999999999997 445556666777778887 899999999999999999999


Q ss_pred             HHHh
Q psy10504        263 VREM  266 (286)
Q Consensus       263 ~~~i  266 (286)
                      +..+
T Consensus       160 ~~~~  163 (168)
T cd04177         160 VRQI  163 (168)
T ss_pred             HHHH
Confidence            8754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04110 Rab35 Rab35 subfamily

Probab=99.97  E-value=6.6e-29  Score=208.79  Aligned_cols=165  Identities=34%  Similarity=0.519  Sum_probs=144.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+||+++|++|+|||||++++.++.+...+.+|.+ ++....+..++..+.+.+|||||++.+..++..++++++++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            468999999999999999999999988877777776 4455667778888889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++++.+++.+..|+..+...  .+..|+++|+||+|+. ..+.....+...+++..+++++++||++|.|++++|++
T Consensus        85 v~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~  161 (199)
T cd04110          85 VYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDP-ERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC  161 (199)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence            99999999999999999988764  3578999999999997 44455667778888888899999999999999999999


Q ss_pred             HHHHhhcCC
Q psy10504        262 IVREMNFNP  270 (286)
Q Consensus       262 i~~~i~~~~  270 (286)
                      |.+.+....
T Consensus       162 l~~~~~~~~  170 (199)
T cd04110         162 ITELVLRAK  170 (199)
T ss_pred             HHHHHHHhh
Confidence            999876543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=5.7e-29  Score=212.18  Aligned_cols=163  Identities=28%  Similarity=0.499  Sum_probs=141.7

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      +..+||+++|++|||||||++++..+.+...+.+|++ +.....+..++..+.+.+|||+|+++|..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            5679999999999999999999999999888888876 445556777777888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|||++++.+++.+..|+..+...  .+++|+++|+||+|+..  +.+...+. .+.+..++++++|||++|.|++++|+
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~--~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~  165 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFL  165 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhh--ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHH
Confidence            999999999999999999998864  35899999999999962  33333344 56677789999999999999999999


Q ss_pred             HHHHHhhcC
Q psy10504        261 EIVREMNFN  269 (286)
Q Consensus       261 ~i~~~i~~~  269 (286)
                      +|++.+.+.
T Consensus       166 ~l~~~~~~~  174 (219)
T PLN03071        166 YLARKLAGD  174 (219)
T ss_pred             HHHHHHHcC
Confidence            999998654

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.97  E-value=5.1e-29  Score=201.82  Aligned_cols=158  Identities=34%  Similarity=0.590  Sum_probs=137.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEEC--CeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD--KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      +||+++|++++|||||++++.++.+...+.+|++ ++....+.+.  +..+.+++|||||+++|..++..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            4899999999999999999999988887777765 3334555666  677889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++++++++.+..|+..+...  .+++|+++|+||+|+. ..+.+...+...+++..+++++++||++|.|++++|++
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  157 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLL-DQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEY  157 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcc-cccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999888653  3589999999999997 44556667788888889999999999999999999999


Q ss_pred             HHHH
Q psy10504        262 IVRE  265 (286)
Q Consensus       262 i~~~  265 (286)
                      |...
T Consensus       158 l~~~  161 (162)
T cd04106         158 LAEK  161 (162)
T ss_pred             HHHh
Confidence            9764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04111 Rab39 Rab39 subfamily

Probab=99.97  E-value=6.5e-29  Score=210.69  Aligned_cols=166  Identities=34%  Similarity=0.564  Sum_probs=143.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEE-CCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEV-DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .+||+++|++|+|||||++++.++.+...+.+|++ ++....+.+ ++..+.+++|||||++.+..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            48999999999999999999999988777777765 444555655 4667789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++++.+++++..|+..+.........|+++|+||+|+. ..+.+...+...+++..+++++++||++|.|++++|++
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE-SQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc-cccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999988775444467899999999997 45567777888899999999999999999999999999


Q ss_pred             HHHHhhcCC
Q psy10504        262 IVREMNFNP  270 (286)
Q Consensus       262 i~~~i~~~~  270 (286)
                      |++.+.+..
T Consensus       161 l~~~~~~~~  169 (211)
T cd04111         161 LTQEIYERI  169 (211)
T ss_pred             HHHHHHHHh
Confidence            999876543

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=4.9e-29  Score=202.02  Aligned_cols=160  Identities=42%  Similarity=0.756  Sum_probs=148.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCc-cceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      ||+++|+.++|||||+++|.++.+...+.+|. .+.....+..++..+.+.+||++|+++|..++..+++++|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999998887 57778889999999999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504        185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR  264 (286)
Q Consensus       185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~  264 (286)
                      ++++.+++.+..|+..+..... .+.|+++++||.|+. ..+.++..+.+.+++.++.+|++|||+++.|+.++|..+++
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~  158 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLS-DEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIR  158 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGG-GGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred             cccccccccccccccccccccc-ccccceeeecccccc-ccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHH
Confidence            9999999999999999988654 468999999999997 46778888999999999999999999999999999999999


Q ss_pred             Hhh
Q psy10504        265 EMN  267 (286)
Q Consensus       265 ~i~  267 (286)
                      .+.
T Consensus       159 ~i~  161 (162)
T PF00071_consen  159 KIL  161 (162)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            874

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01866 Rab2 Rab2 subfamily

Probab=99.97  E-value=1.1e-28  Score=201.81  Aligned_cols=163  Identities=36%  Similarity=0.546  Sum_probs=143.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      .+||+++|++|||||||++++.++.+...+.++.+ ++....+..++..+.+.+|||||++++..++..+++.+|++++|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999988777766654 44456677888888899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      +|++++.+++++..|+..+.... .+++|+++|+||.|+. ..+.....+...++...+++++++||+++.|++++|+++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866          84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLE-SRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999887753 4689999999999997 345566777888888889999999999999999999999


Q ss_pred             HHHhhc
Q psy10504        263 VREMNF  268 (286)
Q Consensus       263 ~~~i~~  268 (286)
                      ++.+.+
T Consensus       162 ~~~~~~  167 (168)
T cd01866         162 AKEIYE  167 (168)
T ss_pred             HHHHHh
Confidence            988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04142 RRP22 RRP22 subfamily

Probab=99.97  E-value=5.9e-29  Score=208.82  Aligned_cols=181  Identities=29%  Similarity=0.506  Sum_probs=142.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchh--------hhhhcccC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFAS--------MRDLYIKN  175 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~--------~~~~~~~~  175 (286)
                      +||+++|++|||||||++++.++.+...+.++++ +.....+.+++..+.+++|||||+..+..        .....+++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            4899999999999999999999999888888876 33445667788888899999999765432        23445789


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHHh--CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-HhcCCCEEEEeCCCC
Q psy10504        176 GQGFVVVYSLTNHHTFQDIKQMKELITRVK--GSERVPILLVANKLDLASHQREVPTLDGQALA-QSWGCPFIEASAKNK  252 (286)
Q Consensus       176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~vSa~~~  252 (286)
                      +|++++|||++++.+++.+..|+..+....  ..+++|+++|+||+|+.. .+.....+.+.++ +..++++++|||++|
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g  159 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR-HRFAPRHVLSVLVRKSWKCGYLECSAKYN  159 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc-cccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence            999999999999999999999998887754  246899999999999973 3444555555554 356899999999999


Q ss_pred             CcHHHHHHHHHHHhhcCCCCcCCCce-----ecCccccC
Q psy10504        253 TNVNEMFAEIVREMNFNPEKDNASFC-----WCSSCSIL  286 (286)
Q Consensus       253 ~gv~~l~~~i~~~i~~~~~~~~~~~~-----~~~~c~~~  286 (286)
                      .|++++|+.+++.+...........+     ....|++|
T Consensus       160 ~~v~~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (198)
T cd04142         160 WHILLLFKELLISATTRGRSTHPALRLQGALHRERCSIM  198 (198)
T ss_pred             CCHHHHHHHHHHHhhccCCCccHHHHHHHHHhhcCcccC
Confidence            99999999999987655544332221     22568776

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=9.9e-29  Score=203.98  Aligned_cols=179  Identities=41%  Similarity=0.655  Sum_probs=154.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      .||+++|++|+|||||++++..+.+...+.+++.......+..++..+.+.+|||||+++|..++..++..++++++|||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999999888888888876667778888888889999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504        185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR  264 (286)
Q Consensus       185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~  264 (286)
                      +++..+++.+..|+..+.......+.|+++|+||+|+. ..+.....+...+.+.++.+++++||+++.|++++|+++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH-TQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh-hcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999998888876555688999999999997 34555566667778888899999999999999999999999


Q ss_pred             HhhcCCCCcCCCceecCccccC
Q psy10504        265 EMNFNPEKDNASFCWCSSCSIL  286 (286)
Q Consensus       265 ~i~~~~~~~~~~~~~~~~c~~~  286 (286)
                      .+...+....  ......|++|
T Consensus       161 ~~~~~~~~~~--~~~~~~~~~~  180 (180)
T cd04137         161 EIEKVENPLD--PGQKKKCSIM  180 (180)
T ss_pred             HHHHhcCCCC--CCCCCCceeC
Confidence            9887655443  3355788887

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01864 Rab19 Rab19 subfamily

Probab=99.97  E-value=1.1e-28  Score=200.92  Aligned_cols=161  Identities=34%  Similarity=0.569  Sum_probs=139.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+||+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+++|||||++++..++..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            458999999999999999999999888777766664 4455667788887889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCCCcHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~l~~  260 (286)
                      |||++++.+++.+..|+..+... ..+++|+++|+||+|+. ..+.....+...+++..+. .++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~  159 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLE-EQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL  159 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence            99999999999999999998764 34589999999999997 4455666777788888775 689999999999999999


Q ss_pred             HHHHH
Q psy10504        261 EIVRE  265 (286)
Q Consensus       261 ~i~~~  265 (286)
                      ++.+.
T Consensus       160 ~l~~~  164 (165)
T cd01864         160 LMATE  164 (165)
T ss_pred             HHHHh
Confidence            99875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01868 Rab11_like Rab11-like

Probab=99.97  E-value=1.2e-28  Score=200.47  Aligned_cols=161  Identities=35%  Similarity=0.583  Sum_probs=141.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      .+||+++|+++||||||++++.++.+...+.++.+ ++....+..++..+.+++||+||++++..++..+++.++++++|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            47999999999999999999999988777767765 55566778888888899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      ||++++.+++++..|+..+.... ..++|+++|+||+|+. ..+.....+...++...+++++++||++|.|++++|+++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  160 (165)
T cd01868          83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLR-HLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL  160 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccc-ccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999887753 3368999999999997 445566777788888888999999999999999999999


Q ss_pred             HHHh
Q psy10504        263 VREM  266 (286)
Q Consensus       263 ~~~i  266 (286)
                      ++.+
T Consensus       161 ~~~i  164 (165)
T cd01868         161 LTEI  164 (165)
T ss_pred             HHHh
Confidence            8765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04112 Rab26 Rab26 subfamily

Probab=99.97  E-value=1.2e-28  Score=205.93  Aligned_cols=164  Identities=37%  Similarity=0.651  Sum_probs=142.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCC-ccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFME-KYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +||+++|++|||||||++++.++.+.. .+.+|++ ++....+.+++..+.+++|||||++++..++..+++.+|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            489999999999999999999988754 5666665 44445677888888999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      ||++++.+++++..|+..+.... ..++|+++|+||+|+. ..+.....+.+.+.+.++++++++||++|.|++++|++|
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~-~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l  158 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMS-GERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAV  158 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccch-hccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999998888753 3478999999999997 345566677888888889999999999999999999999


Q ss_pred             HHHhhcCC
Q psy10504        263 VREMNFNP  270 (286)
Q Consensus       263 ~~~i~~~~  270 (286)
                      .+.+.+..
T Consensus       159 ~~~~~~~~  166 (191)
T cd04112         159 AKELKHRK  166 (191)
T ss_pred             HHHHHHhc
Confidence            99887664

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.97  E-value=1.2e-28  Score=201.88  Aligned_cols=164  Identities=35%  Similarity=0.570  Sum_probs=143.5

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccch-hhhhhcccCccEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFA-SMRDLYIKNGQGFV  180 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~-~~~~~~~~~~d~vi  180 (286)
                      +.+||+++|++|+|||||++++..+.+...+.++.+ ++....+.+++..+.+.+|||||++++. .++..+++++|+++
T Consensus         1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i   80 (170)
T cd04115           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (170)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence            358999999999999999999999988877777765 4455667888888889999999999887 57889999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC---CCcHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN---KTNVNE  257 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~---~~gv~~  257 (286)
                      +|||++++.+++.+..|+..+.......++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++   +.++++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~  159 (170)
T cd04115          81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR-EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEA  159 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch-hhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHH
Confidence            999999999999999999988876555689999999999987 4556677778888888899999999999   899999


Q ss_pred             HHHHHHHHhh
Q psy10504        258 MFAEIVREMN  267 (286)
Q Consensus       258 l~~~i~~~i~  267 (286)
                      +|..+++.++
T Consensus       160 ~f~~l~~~~~  169 (170)
T cd04115         160 IFMTLAHKLK  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999998763

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04113 Rab4 Rab4 subfamily

Probab=99.97  E-value=1.1e-28  Score=199.86  Aligned_cols=160  Identities=38%  Similarity=0.548  Sum_probs=140.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +||+++|++|+|||||++++.++.+...+.++.+ ++....+.+++..+.+.+||+||+++|..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            5899999999999999999999988777766665 444566778888888999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |++++.+++++..|+..+.... .+++|+++|+||+|+. ..+.....+...+++..+++++++||+++.|++++|++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~  158 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLA-DQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA  158 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcc-hhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999998877643 4689999999999997 4556677788888888899999999999999999999998


Q ss_pred             HHh
Q psy10504        264 REM  266 (286)
Q Consensus       264 ~~i  266 (286)
                      +.+
T Consensus       159 ~~~  161 (161)
T cd04113         159 RSI  161 (161)
T ss_pred             HhC
Confidence            753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.96  E-value=1.4e-28  Score=200.95  Aligned_cols=161  Identities=29%  Similarity=0.530  Sum_probs=137.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +||+++|++|||||||++++..+.+...+.+|.+ +.....+..++..+.+.+|||||++++..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5899999999999999999999888877777775 344455666778888999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |++++.+++.+..|+..+.....  ++|+++|+||+|+.  .+.... +...+.+..+++++++||++|.|++++|++|+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~--~~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~  155 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIK--DRKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLA  155 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcc--cccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence            99999999999999999887543  89999999999997  222322 33456666778999999999999999999999


Q ss_pred             HHhhcCC
Q psy10504        264 REMNFNP  270 (286)
Q Consensus       264 ~~i~~~~  270 (286)
                      +.+.+.+
T Consensus       156 ~~~~~~~  162 (166)
T cd00877         156 RKLLGNP  162 (166)
T ss_pred             HHHHhcc
Confidence            9987644

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.96  E-value=9.5e-29  Score=202.77  Aligned_cols=159  Identities=33%  Similarity=0.591  Sum_probs=140.0

Q ss_pred             EEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLT  186 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~  186 (286)
                      |+++|++|+|||||++++.++.+...+.++..+.....+..++..+.+.+|||||+++|..++..+++.+|++++|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            58999999999999999999999888888887777777888898889999999999999999999999999999999999


Q ss_pred             CcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcCC-CEEEEeCCCCC
Q psy10504        187 NHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWGC-PFIEASAKNKT  253 (286)
Q Consensus       187 ~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~  253 (286)
                      ++.+++.+. .|+..+...  .+++|+++|+||+|+.+..           +.+...+.+.+++..+. ++++|||++|.
T Consensus        81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            999999986 488877663  3589999999999996321           23666777888888885 89999999999


Q ss_pred             cHHHHHHHHHHHhh
Q psy10504        254 NVNEMFAEIVREMN  267 (286)
Q Consensus       254 gv~~l~~~i~~~i~  267 (286)
                      |++++|+.+++.+.
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04126 Rab20 Rab20 subfamily

Probab=99.96  E-value=9.6e-29  Score=210.32  Aligned_cols=159  Identities=28%  Similarity=0.408  Sum_probs=133.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      +||+++|.+++|||||+++|..+.+.. +.+|++.... ...  ...+.+.+|||||++.|..++..+++.+|++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~-~~~--~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFY-LKQ--WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEE-EEE--eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            589999999999999999999998865 4555542211 111  245679999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC------------------CCCCCCHHHHHHHHHhcC-----
Q psy10504        185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS------------------HQREVPTLDGQALAQSWG-----  241 (286)
Q Consensus       185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~-----  241 (286)
                      ++++.+++++..|+..+... ..+++|+++|+||+|+.+                  ..+.+..+++..+++..+     
T Consensus        77 vt~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            99999999999988877664 345799999999999974                  146778888999998876     


Q ss_pred             ---------CCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        242 ---------CPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       242 ---------~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                               ++|++|||++|.||+++|+.+++.+.+
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                     689999999999999999999987653

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.96  E-value=1e-28  Score=207.38  Aligned_cols=173  Identities=38%  Similarity=0.653  Sum_probs=145.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL  185 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~  185 (286)
                      ||+++|++|+|||||++++..+.+...+.+++.+.....+.+.+..+.+++||+||+..|..++..+++.+|++++|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            68999999999999999999999988888888777777888888888899999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-hcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504        186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-SWGCPFIEASAKNKTNVNEMFAEIVR  264 (286)
Q Consensus       186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~gv~~l~~~i~~  264 (286)
                      +++.+++.+..|+..+.......++|+++|+||+|+....+.+...+...... ..+.+++++||++|.|++++|+++++
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  160 (198)
T cd04147          81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLR  160 (198)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999998888766556899999999999974444444444443333 45678999999999999999999999


Q ss_pred             HhhcCCCCcCCCce
Q psy10504        265 EMNFNPEKDNASFC  278 (286)
Q Consensus       265 ~i~~~~~~~~~~~~  278 (286)
                      .+...+.....+.+
T Consensus       161 ~~~~~~~~~~~~~~  174 (198)
T cd04147         161 QANLPYNLSPALRR  174 (198)
T ss_pred             HhhcccccchhhHH
Confidence            87755544443333

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.96  E-value=1.6e-28  Score=212.65  Aligned_cols=165  Identities=36%  Similarity=0.635  Sum_probs=143.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      +||+++|++|+|||||+++++.+.+...+.+|+++.....+.+++..+.+.+|||+|++.|..++..++..+|++|+|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            48999999999999999999999999889999988888888899999999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHh--------CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-cCCCEEEEeCCCCCcH
Q psy10504        185 LTNHHTFQDIKQMKELITRVK--------GSERVPILLVANKLDLASHQREVPTLDGQALAQS-WGCPFIEASAKNKTNV  255 (286)
Q Consensus       185 ~~~~~s~~~~~~~~~~i~~~~--------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~gv  255 (286)
                      ++++.+++++..|+..+....        ...++|+++|+||+|+. ..+.+...+...+... .++.++++||++|.|+
T Consensus        81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~-~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD-FPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch-hccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999988887642        23579999999999997 3345566666665543 4678999999999999


Q ss_pred             HHHHHHHHHHhhcCC
Q psy10504        256 NEMFAEIVREMNFNP  270 (286)
Q Consensus       256 ~~l~~~i~~~i~~~~  270 (286)
                      +++|++|++.+....
T Consensus       160 ~elf~~L~~~~~~p~  174 (247)
T cd04143         160 DEMFRALFSLAKLPN  174 (247)
T ss_pred             HHHHHHHHHHhcccc
Confidence            999999999764433

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.96  E-value=1.3e-28  Score=199.49  Aligned_cols=155  Identities=23%  Similarity=0.435  Sum_probs=132.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      +||+++|+.|+|||||+.++..+.+...+.++...+ ...+.+++..+.+.+|||+|++.     ..+++.+|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            489999999999999999999998877766654444 56788899888899999999975     346788999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHhc-CCCEEEEeCCCCCcHHHHHHHH
Q psy10504        185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS-HQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      ++++.+++++..|+..+......+++|+++|+||.|+.. ..+.+...+.+.+++.. +++|++|||++|.|++++|+.+
T Consensus        75 ~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~  154 (158)
T cd04103          75 LENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA  154 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence            999999999999999998765556899999999999853 35667777888888776 4899999999999999999999


Q ss_pred             HHH
Q psy10504        263 VRE  265 (286)
Q Consensus       263 ~~~  265 (286)
                      ++.
T Consensus       155 ~~~  157 (158)
T cd04103         155 AQK  157 (158)
T ss_pred             Hhh
Confidence            865

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>KOG0093|consensus

Probab=99.96  E-value=2e-29  Score=193.32  Aligned_cols=167  Identities=27%  Similarity=0.510  Sum_probs=152.5

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+|+.++|...+|||||+.++.+..|...+..|.+ ++..+++.-..+.+.+++|||+|+++|+.+...++++++++|+
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL   99 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   99 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence            457999999999999999999999999988887776 6666777667788999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      +||+++.+++..+..|...+..+ .-.+.|+|+|+||||+. +++.++.+..+.++..+|..|+++||+.+.|++++|+.
T Consensus       100 myDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd-~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~  177 (193)
T KOG0093|consen  100 MYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMD-SERVISHERGRQLADQLGFEFFETSAKENINVKQVFER  177 (193)
T ss_pred             EEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCc-cceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHH
Confidence            99999999999999999998876 34589999999999998 88899999999999999999999999999999999999


Q ss_pred             HHHHhhcCCC
Q psy10504        262 IVREMNFNPE  271 (286)
Q Consensus       262 i~~~i~~~~~  271 (286)
                      ++..+-+..+
T Consensus       178 lv~~Ic~kms  187 (193)
T KOG0093|consen  178 LVDIICDKMS  187 (193)
T ss_pred             HHHHHHHHhh
Confidence            9998866543

>cd04116 Rab9 Rab9 subfamily

Probab=99.96  E-value=2.7e-28  Score=199.42  Aligned_cols=161  Identities=35%  Similarity=0.581  Sum_probs=139.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+||+++|++|+|||||++++.++.+...+.++.+ ++....+..++..+.+++|||||++++..++..+++.+|++++
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   83 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL   83 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence            568999999999999999999999988877766665 3445667788999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhC---CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKG---SERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNE  257 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~~  257 (286)
                      |||++++.+++.+..|...+.....   ..++|+++|+||+|+.  .+.....+.+.+++..+ .+++++||++|.|+++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  161 (170)
T cd04116          84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP--ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc--ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence            9999999999999999888766432   2478999999999986  45566777888888887 5899999999999999


Q ss_pred             HHHHHHHH
Q psy10504        258 MFAEIVRE  265 (286)
Q Consensus       258 l~~~i~~~  265 (286)
                      +|+++++.
T Consensus       162 ~~~~~~~~  169 (170)
T cd04116         162 AFEEAVRR  169 (170)
T ss_pred             HHHHHHhh
Confidence            99999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PLN03110 Rab GTPase; Provisional

Probab=99.96  E-value=3e-28  Score=207.36  Aligned_cols=164  Identities=32%  Similarity=0.540  Sum_probs=145.5

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+||+++|++|+|||||+++|.++.+...+.+|.+ ++....+.+++..+.+++|||||+++|..++..+++.++++++
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il   90 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   90 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence            568999999999999999999999988777777765 5556778888888889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++++.+++.+..|+..+.... ..++|+++|+||+|+. ..+.....+...++...+++++++||++|.|++++|++
T Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~-~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~  168 (216)
T PLN03110         91 VYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLN-HLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT  168 (216)
T ss_pred             EEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999887743 3579999999999996 45566777888888888999999999999999999999


Q ss_pred             HHHHhhc
Q psy10504        262 IVREMNF  268 (286)
Q Consensus       262 i~~~i~~  268 (286)
                      +++.+.+
T Consensus       169 l~~~i~~  175 (216)
T PLN03110        169 ILLEIYH  175 (216)
T ss_pred             HHHHHHH
Confidence            9987743

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.96  E-value=1.2e-28  Score=200.70  Aligned_cols=161  Identities=43%  Similarity=0.760  Sum_probs=139.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCccc-chhhhhhcccCccEEEEEEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ-FASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~-~~~~~~~~~~~~d~vilv~d  184 (286)
                      ||+++|++|+|||||+++++.+.+...+.+++.......+.+++..+.+++|||||++. +......+++.+|++++|||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            58999999999999999999998888888887666667778888888899999999985 34556778999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC-CcHHHHHHHH
Q psy10504        185 LTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK-TNVNEMFAEI  262 (286)
Q Consensus       185 ~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~-~gv~~l~~~i  262 (286)
                      ++++.+++.+..|+..+..... ..++|+++|+||+|+. ..+.+...+...+++..+++++++||++| .|++++|+.+
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL-HYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH-HhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999988887543 4589999999999986 44556677788888888999999999999 5999999999


Q ss_pred             HHHhh
Q psy10504        263 VREMN  267 (286)
Q Consensus       263 ~~~i~  267 (286)
                      ++.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            98764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.96  E-value=2.1e-28  Score=201.02  Aligned_cols=158  Identities=31%  Similarity=0.550  Sum_probs=139.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      +||+++|++|+|||||+.++.++.+...+.+|..+.....+.+++..+.+++|||||+++|..++..+++++|++++|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            58999999999999999999999999999998877777788888888889999999999999999999999999999999


Q ss_pred             CCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcCC-CEEEEeCCC
Q psy10504        185 LTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWGC-PFIEASAKN  251 (286)
Q Consensus       185 ~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~vSa~~  251 (286)
                      ++++.+++.+. .|+..+...  .+++|+++|+||+|+...           .+.+..++...+++..+. +++++||++
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            99999999985 577777653  347999999999998632           356677788889988886 899999999


Q ss_pred             CCcHHHHHHHHHH
Q psy10504        252 KTNVNEMFAEIVR  264 (286)
Q Consensus       252 ~~gv~~l~~~i~~  264 (286)
                      |.|++++|+.++.
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998874

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.96  E-value=3e-28  Score=197.28  Aligned_cols=163  Identities=46%  Similarity=0.834  Sum_probs=145.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      +||+++|.+|+|||||++++..+.+...+.+++.+........++..+.+.+|||||++++..++..+++.++++++|+|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            48999999999999999999999998888888887777778888888889999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504        185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR  264 (286)
Q Consensus       185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~  264 (286)
                      ++++.+++.+..|+..+.......++|+++|+||+|+.+ .+.....+...+...++.+++++||++|.|++++|+++.+
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED-KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            999999999999999888865556899999999999973 3445566677788888899999999999999999999998


Q ss_pred             Hhhc
Q psy10504        265 EMNF  268 (286)
Q Consensus       265 ~i~~  268 (286)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04139         160 EIRQ  163 (164)
T ss_pred             HHHh
Confidence            7753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04135 Tc10 TC10 subfamily

Probab=99.96  E-value=2.1e-28  Score=200.71  Aligned_cols=160  Identities=31%  Similarity=0.547  Sum_probs=140.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      +||+++|++|+|||||++++..+.+...+.++..+.....+.+++..+.+.+|||||++.|..++..+++.+|++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            58999999999999999999999998888888877777778888888889999999999999999999999999999999


Q ss_pred             CCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcCC-CEEEEeCCC
Q psy10504        185 LTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWGC-PFIEASAKN  251 (286)
Q Consensus       185 ~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~vSa~~  251 (286)
                      ++++.+++++. .|...+...  .+++|+++|+||+|+.+..           +.+...+.+.+++..+. ++++|||++
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            99999999986 566666553  5689999999999986332           25666777888888885 799999999


Q ss_pred             CCcHHHHHHHHHHHh
Q psy10504        252 KTNVNEMFAEIVREM  266 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i  266 (286)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998865

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04124 RabL2 RabL2 subfamily

Probab=99.96  E-value=2.6e-28  Score=198.21  Aligned_cols=159  Identities=25%  Similarity=0.440  Sum_probs=134.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +||+++|++|||||||++++..+.+...+.++.. +........++..+.+.+|||||+++|..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999988777666654 333445667788888999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |++++.+++++..|+..+...  .+++|+++|+||+|+...    ...+...+++..+++++++||++|.|++++|+.++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  154 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPS----VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAI  154 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchh----HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999988763  357999999999998521    12344556667789999999999999999999999


Q ss_pred             HHhhcC
Q psy10504        264 REMNFN  269 (286)
Q Consensus       264 ~~i~~~  269 (286)
                      +.+.+.
T Consensus       155 ~~~~~~  160 (161)
T cd04124         155 KLAVSY  160 (161)
T ss_pred             HHHHhc
Confidence            887653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.96  E-value=3.6e-28  Score=196.94  Aligned_cols=162  Identities=42%  Similarity=0.675  Sum_probs=141.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +||+++|++|+|||||++++.+..+...+.++.+ +.....+..++..+.+.+||+||++++..++..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            5899999999999999999999888766666655 344566778888788999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |++++.+++.+..|+..+..+.. +++|+++|+||+|+. .......+..+.+.+..+++++++||++|.|+++++++|+
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~  158 (164)
T smart00175       81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLE-DQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA  158 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcc-cccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999998877543 589999999999987 3455566777778888899999999999999999999999


Q ss_pred             HHhhc
Q psy10504        264 REMNF  268 (286)
Q Consensus       264 ~~i~~  268 (286)
                      +.+.+
T Consensus       159 ~~~~~  163 (164)
T smart00175      159 REILK  163 (164)
T ss_pred             HHHhh
Confidence            98754

Rab GTPases are implicated in vesicle trafficking.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.96  E-value=4.5e-28  Score=196.44  Aligned_cols=161  Identities=37%  Similarity=0.603  Sum_probs=142.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccc-eEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      ++||+++|++|+|||||++++.++.+...+.++.+. +....+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            479999999999999999999999988766666653 4567788888888899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      +|++++.+++....|+..+..... +++|+++++||+|+. ..+..+..+...+....+++++++||++|.|++++|++|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLE-SKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEI  158 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccc-ccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            999999999999999998887543 689999999999987 345566777778888888999999999999999999999


Q ss_pred             HHHh
Q psy10504        263 VREM  266 (286)
Q Consensus       263 ~~~i  266 (286)
                      ++.+
T Consensus       159 ~~~l  162 (163)
T cd01860         159 AKKL  162 (163)
T ss_pred             HHHh
Confidence            9876

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01861 Rab6 Rab6 subfamily

Probab=99.96  E-value=3.9e-28  Score=196.40  Aligned_cols=160  Identities=36%  Similarity=0.585  Sum_probs=139.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      .||+++|+++||||||++++.+..+...+.++.+ ++....+..++..+.+++|||||+.++..++..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            3899999999999999999999888776666655 566677778888888999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |++++.+++.+..|+..+..... .+.|+++++||+|+. ..+.....+...+++..+++++++||+++.|++++++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~  158 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLS-DKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA  158 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhcc-ccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999998876432 379999999999996 4555677778888888889999999999999999999998


Q ss_pred             HHh
Q psy10504        264 REM  266 (286)
Q Consensus       264 ~~i  266 (286)
                      +.+
T Consensus       159 ~~l  161 (161)
T cd01861         159 SAL  161 (161)
T ss_pred             HhC
Confidence            753

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>KOG0091|consensus

Probab=99.96  E-value=4.4e-29  Score=194.73  Aligned_cols=165  Identities=36%  Similarity=0.568  Sum_probs=148.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEE-CCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEV-DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ..++++++|++-+|||||++++..+++..-..||.+ |+....+.. +|..+++++|||+||++|+++...||++.-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            568999999999999999999999999998888887 555544443 577889999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcE-EEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPI-LLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      +|||.++.++|+.++.|..+...+...|..++ .+|++|+|+. ..++++.++++.+++..|..|+++||++|.|+++.|
T Consensus        87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~-SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF  165 (213)
T KOG0091|consen   87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ-SQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF  165 (213)
T ss_pred             EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh-hhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence            99999999999999999999888766566665 6889999998 889999999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q psy10504        260 AEIVREMNF  268 (286)
Q Consensus       260 ~~i~~~i~~  268 (286)
                      +.|.+.+-.
T Consensus       166 ~mlaqeIf~  174 (213)
T KOG0091|consen  166 DMLAQEIFQ  174 (213)
T ss_pred             HHHHHHHHH
Confidence            999987654

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.96  E-value=3.3e-28  Score=203.73  Aligned_cols=158  Identities=27%  Similarity=0.427  Sum_probs=130.6

Q ss_pred             eEEEEEECCCCCcHHHHHH-HHhcC-----cCCCccCCCcc--ceEEEE--------EEECCeEEEEEEEeCCCcccchh
Q psy10504        104 EFKVVVLGSGGVGKSALTV-QFVSG-----CFMEKYDPTIE--DFYRKE--------IEVDKAPCVLEILDTAGTEQFAS  167 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~-~l~~~-----~~~~~~~~t~~--~~~~~~--------~~~~~~~~~l~l~DtpG~~~~~~  167 (286)
                      .+||+++|+.+||||||+. ++.++     .+...+.||++  +.....        ..+++..+.+++|||+|+++  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 66554     34566778874  222222        25688899999999999976  3


Q ss_pred             hhhhcccCccEEEEEEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCC------------------CCCC
Q psy10504        168 MRDLYIKNGQGFVVVYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASH------------------QREV  228 (286)
Q Consensus       168 ~~~~~~~~~d~vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~------------------~~~~  228 (286)
                      ++..+++++|++++|||++++.+++++. .|...+...  .++.|+++|+||+|+.+.                  .+.+
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V  157 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL  157 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence            5677899999999999999999999997 588887664  357899999999999631                  3678


Q ss_pred             CHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHH
Q psy10504        229 PTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE  265 (286)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~  265 (286)
                      ...+++.+++.++++|++|||++|.|++++|+.+++.
T Consensus       158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            8889999999999999999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04118 Rab24 Rab24 subfamily

Probab=99.96  E-value=7.8e-28  Score=200.95  Aligned_cols=163  Identities=30%  Similarity=0.469  Sum_probs=139.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCC-ccCCCccce-EEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFME-KYDPTIEDF-YRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~~~t~~~~-~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +||+++|++|+|||||++++.++.+.. .+.+|++.. ....+..++..+.+.+|||||++++..++..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            489999999999999999999998874 577776643 345688889988899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC---CCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ---REVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      ||++++.+++.+..|+..+...  .+++|+++|+||+|+.+..   +.+...+...++...+++++++||++|.|++++|
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  158 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF  158 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999888763  3478999999999986332   3445566777788888999999999999999999


Q ss_pred             HHHHHHhhcC
Q psy10504        260 AEIVREMNFN  269 (286)
Q Consensus       260 ~~i~~~i~~~  269 (286)
                      +++.+.+.+.
T Consensus       159 ~~i~~~~~~~  168 (193)
T cd04118         159 QKVAEDFVSR  168 (193)
T ss_pred             HHHHHHHHHh
Confidence            9999887543

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PLN03118 Rab family protein; Provisional

Probab=99.96  E-value=1.2e-27  Score=202.82  Aligned_cols=166  Identities=36%  Similarity=0.599  Sum_probs=138.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+||+++|++|+|||||+++|.++.+. .+.++.+ ++....+.+++..+.+.+|||||+++|..++..+++.+|++++
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl   91 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL   91 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            4699999999999999999999998774 4455554 4445567778888889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHH-HHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       182 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      |||++++.+++++.. |...+.......+.|+++|+||+|+. ..+.....+...++...+++++++||+++.|++++|+
T Consensus        92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~-~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~  170 (211)
T PLN03118         92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE-SERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFE  170 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999986 44445443334578999999999997 3445566777778888889999999999999999999


Q ss_pred             HHHHHhhcCC
Q psy10504        261 EIVREMNFNP  270 (286)
Q Consensus       261 ~i~~~i~~~~  270 (286)
                      +|.+.+.+.+
T Consensus       171 ~l~~~~~~~~  180 (211)
T PLN03118        171 ELALKIMEVP  180 (211)
T ss_pred             HHHHHHHhhh
Confidence            9998876544

>PLN03108 Rab family protein; Provisional

Probab=99.96  E-value=1.2e-27  Score=202.85  Aligned_cols=165  Identities=36%  Similarity=0.559  Sum_probs=144.5

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+||+++|++|+|||||++++..+.+...+.++++ ++....+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl   84 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            458999999999999999999999888777766665 4445667788888889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++++.+++.+..|+..+.... .++.|+++|+||+|+. ..+.....+.+.+++..+++++++||+++.|++++|++
T Consensus        85 v~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~  162 (210)
T PLN03108         85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLA-HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (210)
T ss_pred             EEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999988876543 3579999999999997 45567778888999999999999999999999999999


Q ss_pred             HHHHhhcC
Q psy10504        262 IVREMNFN  269 (286)
Q Consensus       262 i~~~i~~~  269 (286)
                      +++.+.+.
T Consensus       163 l~~~~~~~  170 (210)
T PLN03108        163 TAAKIYKK  170 (210)
T ss_pred             HHHHHHHH
Confidence            99888654

>KOG0086|consensus

Probab=99.96  E-value=1.3e-28  Score=190.11  Aligned_cols=164  Identities=32%  Similarity=0.476  Sum_probs=151.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .-+|++++|+.|.|||+|+++|...++..+...|++ ++....+.+.++.+++++|||+||++|++..+.||+++.+.++
T Consensus         8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL   87 (214)
T KOG0086|consen    8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL   87 (214)
T ss_pred             hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence            458999999999999999999999999888888877 7778889999999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||+++.++|+.+..|+..+... ..+++-+++++||.|+. +.+++...+...++.+..+.++++||++|+|+++.|-.
T Consensus        88 VYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~-~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~  165 (214)
T KOG0086|consen   88 VYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLD-PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK  165 (214)
T ss_pred             EEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcC-hhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHH
Confidence            99999999999999999999874 56788899999999998 88899999999999999999999999999999999987


Q ss_pred             HHHHhhc
Q psy10504        262 IVREMNF  268 (286)
Q Consensus       262 i~~~i~~  268 (286)
                      ..+++..
T Consensus       166 c~~tIl~  172 (214)
T KOG0086|consen  166 CARTILN  172 (214)
T ss_pred             HHHHHHH
Confidence            7777654

>cd01863 Rab18 Rab18 subfamily

Probab=99.96  E-value=1.5e-27  Score=193.10  Aligned_cols=159  Identities=33%  Similarity=0.566  Sum_probs=139.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +||+++|++|+|||||++++.++.+...+.++.+ ++....+...+..+.+.+|||||++.+..++..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999888776666665 344455667777888999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |++++.+++.+..|+..+..+...++.|+++|+||+|+.  .+.....+...+.+..+++++++||++|.|+++++++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~  158 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE--NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV  158 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            999999999999999988887666789999999999997  344556677788888899999999999999999999998


Q ss_pred             HH
Q psy10504        264 RE  265 (286)
Q Consensus       264 ~~  265 (286)
                      +.
T Consensus       159 ~~  160 (161)
T cd01863         159 EK  160 (161)
T ss_pred             Hh
Confidence            75

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.96  E-value=7.5e-28  Score=202.18  Aligned_cols=155  Identities=26%  Similarity=0.493  Sum_probs=135.4

Q ss_pred             ECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCc
Q psy10504        110 LGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH  188 (286)
Q Consensus       110 vG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~  188 (286)
                      +|++|||||||+++++.+.+...+.+|++ ++....+.+++..+.+.+|||+|+++|..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999999888888875 55566678888889999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        189 HTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       189 ~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      .+++.+..|...+.+.  .+++|+++|+||+|+..  +.+.... ..+++..++++++|||++|.|++++|++|++.+.+
T Consensus        81 ~S~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~--~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~  155 (200)
T smart00176       81 VTYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKD--RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  155 (200)
T ss_pred             HHHHHHHHHHHHHHHh--CCCCCEEEEEECccccc--ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999998874  35899999999999862  3333333 35677788999999999999999999999998865


Q ss_pred             C
Q psy10504        269 N  269 (286)
Q Consensus       269 ~  269 (286)
                      .
T Consensus       156 ~  156 (200)
T smart00176      156 D  156 (200)
T ss_pred             c
Confidence            4

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0088|consensus

Probab=99.96  E-value=3.5e-29  Score=194.30  Aligned_cols=167  Identities=32%  Similarity=0.575  Sum_probs=152.2

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ...+|++++|..-+|||||+-+++.++|......|.. .+..+++.+.+....+.+|||+||++|.++-+.||++.++++
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal   90 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL   90 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence            3569999999999999999999999999877666654 667788888899999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|||++|.++|+.++.|..++...... .+-++||+||+|+. .++.+...+.+.+++..|..++++||+++.|+.++|+
T Consensus        91 LVyDITDrdSFqKVKnWV~Elr~mlGn-ei~l~IVGNKiDLE-eeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe  168 (218)
T KOG0088|consen   91 LVYDITDRDSFQKVKNWVLELRTMLGN-EIELLIVGNKIDLE-EERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE  168 (218)
T ss_pred             EEEeccchHHHHHHHHHHHHHHHHhCC-eeEEEEecCcccHH-HhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence            999999999999999999999987654 68899999999998 7888999999999999999999999999999999999


Q ss_pred             HHHHHhhcCC
Q psy10504        261 EIVREMNFNP  270 (286)
Q Consensus       261 ~i~~~i~~~~  270 (286)
                      .+...+.+.-
T Consensus       169 ~Lt~~MiE~~  178 (218)
T KOG0088|consen  169 SLTAKMIEHS  178 (218)
T ss_pred             HHHHHHHHHh
Confidence            9998775543

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.96  E-value=1.4e-27  Score=193.86  Aligned_cols=159  Identities=31%  Similarity=0.485  Sum_probs=134.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCcc-ceEEEEEEEC-CeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIE-DFYRKEIEVD-KAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      +||+++|++|||||||++++..+  .+...+.++++ +.....+..+ +..+.+.+|||||++.+..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            48999999999999999999865  67777887775 4334445554 56688999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|||++++.+++++..|+..+....  +++|+++|+||+|+. ....+...+.+.+....+++++++||+++.|++++|+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  157 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLA-DKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFE  157 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccc-cccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHH
Confidence            9999999999999999998887743  578999999999996 4445566666677777889999999999999999999


Q ss_pred             HHHHHh
Q psy10504        261 EIVREM  266 (286)
Q Consensus       261 ~i~~~i  266 (286)
                      ++++.+
T Consensus       158 ~l~~~~  163 (164)
T cd04101         158 SLARAF  163 (164)
T ss_pred             HHHHHh
Confidence            999865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04148 RGK RGK subfamily

Probab=99.96  E-value=1.6e-27  Score=203.61  Aligned_cols=161  Identities=39%  Similarity=0.642  Sum_probs=137.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCC-CccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhccc-CccEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIK-NGQGFVV  181 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~-~~d~vil  181 (286)
                      +||+++|++|+|||||++++..+.+. ..+.++.+ +.....+.+++..+.+.+|||||++  ......+++ ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            48999999999999999999988886 66666665 6667778888888889999999998  334455667 9999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++++.+++.+..|+..+.......++|+++|+||+|+. ..+.+...+...++...+++++++||+++.|++++|++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~-~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~  157 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA-RSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG  157 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc-ccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            99999999999999999988776545689999999999997 34556666677888888899999999999999999999


Q ss_pred             HHHHhhc
Q psy10504        262 IVREMNF  268 (286)
Q Consensus       262 i~~~i~~  268 (286)
                      +++.+..
T Consensus       158 l~~~~~~  164 (221)
T cd04148         158 IVRQIRL  164 (221)
T ss_pred             HHHHHHh
Confidence            9999863

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04123 Rab21 Rab21 subfamily

Probab=99.96  E-value=2.4e-27  Score=191.46  Aligned_cols=160  Identities=33%  Similarity=0.636  Sum_probs=138.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +||+++|++|+|||||++++.++.+...+.+++. +.....+...+..+.+.+||+||++.+..++..+++++|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            5899999999999999999999888766666654 344556777777788999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |++++.+++.+..|+..+..... .++|+++|+||+|+. ..+.....+.+.+.+..+++++++||+++.|++++++++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~  158 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLE-RQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA  158 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999988877544 379999999999997 4455666777778888899999999999999999999998


Q ss_pred             HHh
Q psy10504        264 REM  266 (286)
Q Consensus       264 ~~i  266 (286)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04123         159 KRM  161 (162)
T ss_pred             HHh
Confidence            864

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01862 Rab7 Rab7 subfamily

Probab=99.96  E-value=3e-27  Score=193.15  Aligned_cols=164  Identities=36%  Similarity=0.593  Sum_probs=139.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +||+++|++|||||||++++.++.+...+.++.+ +.....+..++..+.+++||+||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            4899999999999999999999988777777755 455566778888888999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhC---CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKG---SERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~~l~  259 (286)
                      |++++.+++++..|...+.....   ..++|+++|+||+|+.. .+.....+...+.+..+ .+++++||++|.|++++|
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  159 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE-KRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF  159 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence            99999999999888877655432   23799999999999973 44455666777777777 899999999999999999


Q ss_pred             HHHHHHhhcC
Q psy10504        260 AEIVREMNFN  269 (286)
Q Consensus       260 ~~i~~~i~~~  269 (286)
                      +++.+.+.+.
T Consensus       160 ~~i~~~~~~~  169 (172)
T cd01862         160 ETIARKALEQ  169 (172)
T ss_pred             HHHHHHHHhc
Confidence            9999987664

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>KOG0395|consensus

Probab=99.96  E-value=1.1e-27  Score=200.04  Aligned_cols=165  Identities=62%  Similarity=1.059  Sum_probs=157.5

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +.+||+++|.+|+|||+|..++..+.|...|.||+++.....+.+++..+.+.++||+|+++|..++..+++.+|++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      |+++|..||+.+..++..+.+.+....+|+++|+||+|+. ..+.++.+++..++..++++|+++||+.+.+++++|..+
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~-~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLE-RERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccch-hccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            9999999999999999999777777789999999999998 568999999999999999999999999999999999999


Q ss_pred             HHHhhc
Q psy10504        263 VREMNF  268 (286)
Q Consensus       263 ~~~i~~  268 (286)
                      ++.+..
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            998765

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.96  E-value=2.9e-27  Score=194.15  Aligned_cols=160  Identities=31%  Similarity=0.522  Sum_probs=137.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      .||+++|++|||||||++++.++.+...+.+|..+.....+.+++..+.+.+|||||+++|..++..++.++|++++|||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~   81 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   81 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence            58999999999999999999999998888888887766777888888889999999999999999899999999999999


Q ss_pred             CCCcccHHHHHH-HHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcC-CCEEEEeCCC
Q psy10504        185 LTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWG-CPFIEASAKN  251 (286)
Q Consensus       185 ~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~vSa~~  251 (286)
                      ++++.+++.+.. |...+...  .+++|+++|+||+|+.+..           ..+...+.+.+++..+ .++++|||++
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999998864 66666653  3589999999999986321           2344566777777777 4799999999


Q ss_pred             CCcHHHHHHHHHHHh
Q psy10504        252 KTNVNEMFAEIVREM  266 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i  266 (286)
                      |.|++++|++|.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd00876 Ras Ras family

Probab=99.96  E-value=2.8e-27  Score=190.66  Aligned_cols=160  Identities=59%  Similarity=1.024  Sum_probs=143.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL  185 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~  185 (286)
                      ||+++|++|||||||++++.+..+...+.+++.+.....+..++..+.+++||+||++.+..++..+++.+|++++|||+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            68999999999999999999988888888888877777888888788899999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHH
Q psy10504        186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE  265 (286)
Q Consensus       186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~  265 (286)
                      +++++++++..|+..+.......++|+++|+||+|+. ..+.....+.+.+.+..+.+++++||+++.|++++|++|++.
T Consensus        81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE-NERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc-ccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999888876554689999999999997 345566777888888888999999999999999999999875


Q ss_pred             h
Q psy10504        266 M  266 (286)
Q Consensus       266 i  266 (286)
                      +
T Consensus       160 i  160 (160)
T cd00876         160 I  160 (160)
T ss_pred             C
Confidence            3

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd01892 Miro2 Miro2 subfamily

Probab=99.96  E-value=2.3e-27  Score=194.37  Aligned_cols=163  Identities=24%  Similarity=0.324  Sum_probs=136.2

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCC-CccCCCccce-EEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDF-YRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~-~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      .+.+||+++|++|+|||||++++.++.+. ..+.+|++.. ....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            36799999999999999999999999998 8888887644 345677888888899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCCCcHHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEM  258 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~l  258 (286)
                      ++|+|++++.+++.+..|+..+..   ..++|+++|+||+|+.+ .+.....+.+.+++..+. .++++||++|.|++++
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  157 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDE-QQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNEL  157 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccc-cccccccCHHHHHHHcCCCCCEEEEeccCccHHHH
Confidence            999999999999998888775532   23789999999999963 232223345667777776 4699999999999999


Q ss_pred             HHHHHHHhhc
Q psy10504        259 FAEIVREMNF  268 (286)
Q Consensus       259 ~~~i~~~i~~  268 (286)
                      |+.+++.+..
T Consensus       158 f~~l~~~~~~  167 (169)
T cd01892         158 FTKLATAAQY  167 (169)
T ss_pred             HHHHHHHhhC
Confidence            9999998753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0095|consensus

Probab=99.96  E-value=4.5e-28  Score=186.46  Aligned_cols=161  Identities=34%  Similarity=0.576  Sum_probs=148.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      -+||+++|..|+|||+|++++..+.|++....|++ ++..+++.+++.++++++|||+||++|+++...||+.++++|+|
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv   86 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence            48999999999999999999999999998888887 88889999999999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      ||++=..+|+-+..|+.++..+.. .++--|+|+||+|+. +.++++....+.+.+....-|+++||++.+|++.+|..+
T Consensus        87 ydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~-drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~  164 (213)
T KOG0095|consen   87 YDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLA-DRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDL  164 (213)
T ss_pred             EecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchh-hhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHH
Confidence            999999999999999999998754 356678999999997 677888888999999877888999999999999999988


Q ss_pred             HHHh
Q psy10504        263 VREM  266 (286)
Q Consensus       263 ~~~i  266 (286)
                      +-.+
T Consensus       165 a~rl  168 (213)
T KOG0095|consen  165 ACRL  168 (213)
T ss_pred             HHHH
Confidence            7654

>cd04129 Rho2 Rho2 subfamily

Probab=99.95  E-value=6.8e-27  Score=194.58  Aligned_cols=169  Identities=28%  Similarity=0.510  Sum_probs=143.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      .||+++|++|+|||||++++..+.+...+.++..+.....+..++..+.+.+||++|++.+...+..+++.+|+++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~   81 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA   81 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999988888777777776666677788888889999999999998888888899999999999


Q ss_pred             CCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCC---------CCCCCHHHHHHHHHhcCC-CEEEEeCCCCC
Q psy10504        185 LTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASH---------QREVPTLDGQALAQSWGC-PFIEASAKNKT  253 (286)
Q Consensus       185 ~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~  253 (286)
                      +++.++++.+. .|+..+...  .+++|+++|+||+|+.+.         .+.+...+...+++..+. ++++|||++|.
T Consensus        82 i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          82 VDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            99999999997 588877653  347999999999998532         234556677888888884 89999999999


Q ss_pred             cHHHHHHHHHHHhhcCCCCcCC
Q psy10504        254 NVNEMFAEIVREMNFNPEKDNA  275 (286)
Q Consensus       254 gv~~l~~~i~~~i~~~~~~~~~  275 (286)
                      |++++|+++.+.+.........
T Consensus       160 ~v~~~f~~l~~~~~~~~~~~~~  181 (187)
T cd04129         160 GVDDVFEAATRAALLVRKSEPG  181 (187)
T ss_pred             CHHHHHHHHHHHHhcccCcccc
Confidence            9999999999888766655543

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0081|consensus

Probab=99.95  E-value=4.9e-29  Score=193.63  Aligned_cols=164  Identities=29%  Similarity=0.492  Sum_probs=147.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEEC---------CeEEEEEEEeCCCcccchhhhhhcc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD---------KAPCVLEILDTAGTEQFASMRDLYI  173 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~---------~~~~~l~l~DtpG~~~~~~~~~~~~  173 (286)
                      -+|.+.+|++|+||||++.++.+++|......|++ ++..+.+.+.         +..+++++|||+||++|+++...++
T Consensus         9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf   88 (219)
T KOG0081|consen    9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF   88 (219)
T ss_pred             HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence            36788999999999999999999999888777766 5555555442         4568899999999999999999999


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCC
Q psy10504        174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT  253 (286)
Q Consensus       174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~  253 (286)
                      ++|-+++++||+++..+|-+++.|+..+..+..+++..+++++||+|++ +.+.++..+...++.++++||+++||-+|.
T Consensus        89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~-~~R~Vs~~qa~~La~kyglPYfETSA~tg~  167 (219)
T KOG0081|consen   89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLE-DQRVVSEDQAAALADKYGLPYFETSACTGT  167 (219)
T ss_pred             HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchh-hhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence            9999999999999999999999999999998888899999999999998 788899999999999999999999999999


Q ss_pred             cHHHHHHHHHHHhhc
Q psy10504        254 NVNEMFAEIVREMNF  268 (286)
Q Consensus       254 gv~~l~~~i~~~i~~  268 (286)
                      |+++..+.++..+.+
T Consensus       168 Nv~kave~LldlvM~  182 (219)
T KOG0081|consen  168 NVEKAVELLLDLVMK  182 (219)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999988888776544

>KOG0393|consensus

Probab=99.95  E-value=8.8e-28  Score=197.02  Aligned_cols=167  Identities=33%  Similarity=0.560  Sum_probs=152.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEEC-CeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVD-KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+|++++|+.++|||+|+..+..+.|+..|.||..+.....+.++ +..+.+.+|||+||++|+.+|...|.++|++++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~   82 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL   82 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence            5689999999999999999999999999999999999999999995 999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcC-CCEEEEe
Q psy10504        182 VYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWG-CPFIEAS  248 (286)
Q Consensus       182 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~vS  248 (286)
                      ||++.++.+++++. .|+.++.++  +|++|+|+|++|.||.++.           ..+..++.+.++++.| ..|++||
T Consensus        83 cfsv~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS  160 (198)
T KOG0393|consen   83 CFSVVSPESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS  160 (198)
T ss_pred             EEEcCChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence            99999999999976 488888874  5899999999999998431           3577888999999999 7899999


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCCC
Q psy10504        249 AKNKTNVNEMFAEIVREMNFNPE  271 (286)
Q Consensus       249 a~~~~gv~~l~~~i~~~i~~~~~  271 (286)
                      |++..|++++|+..+..+...++
T Consensus       161 a~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  161 ALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhCCcHHHHHHHHHHHhcccc
Confidence            99999999999999999876654

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.95  E-value=6.9e-27  Score=193.65  Aligned_cols=157  Identities=16%  Similarity=0.266  Sum_probs=123.2

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .+.+||+++|+++||||||++++..+.+.. +.||++... ..+..+  .+.+++||+||+++++.+|..+++++|++|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~-~~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeE-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            356899999999999999999999877753 566665332 334444  4559999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC--------CEEEEeCCCCC
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC--------PFIEASAKNKT  253 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--------~~~~vSa~~~~  253 (286)
                      |+|++++.+++++..++..+......+++|++||+||+|+++.   ...   +.+.+..++        .++++||++|+
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~---~~~---~~~~~~l~l~~~~~~~~~~~~~Sa~~g~  164 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MNA---AEITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC---CCH---HHHHHHhCccccCCCceEEEeccCCCCC
Confidence            9999999999988887776654333457999999999999732   222   233333332        35689999999


Q ss_pred             cHHHHHHHHHHHhhc
Q psy10504        254 NVNEMFAEIVREMNF  268 (286)
Q Consensus       254 gv~~l~~~i~~~i~~  268 (286)
                      |++++|+||++.+..
T Consensus       165 gv~e~~~~l~~~~~~  179 (181)
T PLN00223        165 GLYEGLDWLSNNIAN  179 (181)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999988764

>cd04149 Arf6 Arf6 subfamily

Probab=99.95  E-value=5.6e-27  Score=191.87  Aligned_cols=156  Identities=16%  Similarity=0.220  Sum_probs=121.6

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .+.+||+++|++|+|||||++++..+.+.. +.+|++... ..+..  ..+.+++|||||++++..++..+++++|++++
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~-~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV-ETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccce-EEEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            356899999999999999999998877654 455654332 23333  34569999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-----cCCCEEEEeCCCCCcHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS-----WGCPFIEASAKNKTNVN  256 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~vSa~~~~gv~  256 (286)
                      |||++++.+++++..|+..+......+++|+++|+||+|+.+   .....+.+...+.     ..++++++||++|.|++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD---AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc---CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            999999999999988877766533345789999999999862   1233444443221     22468999999999999


Q ss_pred             HHHHHHHH
Q psy10504        257 EMFAEIVR  264 (286)
Q Consensus       257 ~l~~~i~~  264 (286)
                      ++|+||.+
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99999975

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04158 ARD1 ARD1 subfamily

Probab=99.95  E-value=7.8e-27  Score=191.05  Aligned_cols=159  Identities=20%  Similarity=0.232  Sum_probs=126.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL  185 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~  185 (286)
                      ||+++|+++||||||++++.++.+.. +.+|++... ..+..+  .+.+.+|||||++++..++..+++.+|++++|+|+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~-~~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNV-ETVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeE-EEEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            68999999999999999999987654 566654222 234444  45589999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC------CCEEEEeCCCCCcHHHHH
Q psy10504        186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG------CPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~vSa~~~~gv~~l~  259 (286)
                      +++.+++++..|+..+.......+.|+++|+||+|+.+   ..+..+...+.....      +.+++|||++|.|++++|
T Consensus        77 s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          77 SHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG---ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc---CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            99999999999988887644445689999999999962   244455555443222      257899999999999999


Q ss_pred             HHHHHHhhcCCC
Q psy10504        260 AEIVREMNFNPE  271 (286)
Q Consensus       260 ~~i~~~i~~~~~  271 (286)
                      +||++.+.+...
T Consensus       154 ~~l~~~~~~~~~  165 (169)
T cd04158         154 DWLSRQLVAAGV  165 (169)
T ss_pred             HHHHHHHhhccc
Confidence            999998876553

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04114 Rab30 Rab30 subfamily

Probab=99.95  E-value=3.5e-26  Score=186.48  Aligned_cols=162  Identities=31%  Similarity=0.539  Sum_probs=138.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+||+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++.|...+..+++.+|++++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   85 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL   85 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            458999999999999999999998877766666554 4556677888888889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++++.+++.+..|+..+.... ..++|+++|+||+|+. ..+.+.......+.+....+++++||++|.|++++|++
T Consensus        86 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~-~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  163 (169)
T cd04114          86 TYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLA-ERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD  163 (169)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccc-cccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence            999999999999999988876643 3478999999999987 44555556667777777789999999999999999999


Q ss_pred             HHHHh
Q psy10504        262 IVREM  266 (286)
Q Consensus       262 i~~~i  266 (286)
                      |.+.+
T Consensus       164 i~~~~  168 (169)
T cd04114         164 LACRL  168 (169)
T ss_pred             HHHHh
Confidence            98754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00157 Rho Rho (Ras homology) family

Probab=99.95  E-value=3.2e-26  Score=186.89  Aligned_cols=158  Identities=33%  Similarity=0.595  Sum_probs=135.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      +||+++|++|+|||||+++|.++.+...+.++..+........++..+.+++|||||++++..++..+++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999999988888888877777778888888899999999999999889999999999999999


Q ss_pred             CCCcccHHHHHH-HHHHHHHHhCCCCCcEEEEEeCCCCCCCCC----------CCCHHHHHHHHHhcCC-CEEEEeCCCC
Q psy10504        185 LTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQR----------EVPTLDGQALAQSWGC-PFIEASAKNK  252 (286)
Q Consensus       185 ~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~-~~~~vSa~~~  252 (286)
                      ++++.++..... |+..+...  .+++|+++|+||+|+.+...          .+...+...+....+. +++++||++|
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            999998887654 66666653  24899999999999974432          3356667777777876 9999999999


Q ss_pred             CcHHHHHHHHHH
Q psy10504        253 TNVNEMFAEIVR  264 (286)
Q Consensus       253 ~gv~~l~~~i~~  264 (286)
                      .|+++++++|++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04154 Arl2 Arl2 subfamily

Probab=99.95  E-value=1.4e-26  Score=190.15  Aligned_cols=158  Identities=18%  Similarity=0.276  Sum_probs=124.2

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      +.+..++|+++|++|||||||++++.+..+ ..+.+|.+ +....+.+++  +.+.+|||||++.++.++..+++.+|++
T Consensus        10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g-~~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154          10 LKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG-FQIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc-cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            344668999999999999999999998744 34555554 3334455554  4589999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----hcCCCEEEEeCCCCCc
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-----SWGCPFIEASAKNKTN  254 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~g  254 (286)
                      ++|+|++++.++++...|+..+.......++|+++|+||+|+....   ...+.....+     ..+++++++||++|.|
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  162 (173)
T cd04154          86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL---SEEEIREALELDKISSHHWRIQPCSAVTGEG  162 (173)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC---CHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence            9999999999999988888777654444689999999999997322   3333333332     2346899999999999


Q ss_pred             HHHHHHHHHH
Q psy10504        255 VNEMFAEIVR  264 (286)
Q Consensus       255 v~~l~~~i~~  264 (286)
                      ++++|+++++
T Consensus       163 i~~l~~~l~~  172 (173)
T cd04154         163 LLQGIDWLVD  172 (173)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.95  E-value=2.3e-26  Score=186.47  Aligned_cols=153  Identities=16%  Similarity=0.254  Sum_probs=118.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      +||+++|.++||||||++++..+.+.. +.+|++... ..+..+  .+.+.+|||||++++..++..+++++|++++|+|
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcce-EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            489999999999999999998887764 666665332 234443  4559999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH-HHHHH----hcCCCEEEEeCCCCCcHHHHH
Q psy10504        185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG-QALAQ----SWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      ++++.++++...++..+.......+.|+++++||+|+.+.   ....+. ..+..    ...+.++++||++|+|++++|
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA---MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            9999999999887777754333346899999999999632   112221 22211    112457899999999999999


Q ss_pred             HHHHH
Q psy10504        260 AEIVR  264 (286)
Q Consensus       260 ~~i~~  264 (286)
                      +||.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.95  E-value=1.3e-26  Score=190.99  Aligned_cols=157  Identities=15%  Similarity=0.223  Sum_probs=121.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      ..+||+++|++|+|||||++++..+.+.. +.+|++... ..+..+  .+.+.+|||||++++..++..+++++|++|+|
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v   87 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNV-ETVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV   87 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            46899999999999999999998777743 556665332 233444  35599999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----hcCCCEEEEeCCCCCcHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-----SWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~gv~~  257 (286)
                      +|++++.++++...|+..+......+++|++||+||+|+.+..   ...+......     ...+.++++||++|.|+++
T Consensus        88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  164 (175)
T smart00177       88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM---KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE  164 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC---CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence            9999999999998888877653334578999999999996322   2222222111     1123467899999999999


Q ss_pred             HHHHHHHHh
Q psy10504        258 MFAEIVREM  266 (286)
Q Consensus       258 l~~~i~~~i  266 (286)
                      +|+||.+.+
T Consensus       165 ~~~~l~~~~  173 (175)
T smart00177      165 GLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHh
Confidence            999998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>KOG0083|consensus

Probab=99.95  E-value=2.6e-28  Score=184.46  Aligned_cols=160  Identities=34%  Similarity=0.595  Sum_probs=143.7

Q ss_pred             EECCCCCcHHHHHHHHhcCcCCCc-cCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECC
Q psy10504        109 VLGSGGVGKSALTVQFVSGCFMEK-YDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLT  186 (286)
Q Consensus       109 ivG~~~~GKTSLi~~l~~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~  186 (286)
                      ++|++++|||+|+-++.++.|... ...|.+ ++..+.+..++..+++++|||+||++|++....||+++|+.+++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            689999999999999999888654 344444 666777889999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504        187 NHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       187 ~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i  266 (286)
                      +..||+++..|+..+..+. ...+.+.+++||+|+. .++.+...+.+.+++.+++|+.++||++|.|++..|-.|.+.+
T Consensus        82 nkasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a-~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l  159 (192)
T KOG0083|consen   82 NKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLA-HERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL  159 (192)
T ss_pred             cchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccc-hhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence            9999999999999998864 3478899999999997 6788888999999999999999999999999999999999988


Q ss_pred             hcCC
Q psy10504        267 NFNP  270 (286)
Q Consensus       267 ~~~~  270 (286)
                      ++..
T Consensus       160 ~k~~  163 (192)
T KOG0083|consen  160 KKLK  163 (192)
T ss_pred             HHhc
Confidence            7643

>cd00154 Rab Rab family

Probab=99.95  E-value=6.3e-26  Score=181.70  Aligned_cols=158  Identities=41%  Similarity=0.699  Sum_probs=136.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +||+++|++++|||||++++.++.+...+.+|.+ +.....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            4899999999999999999999988877666654 445566777777788999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |++++.+++.+..|+..+.... ..+.|+++++||+|+. ........+...+....+.+++++||+++.|+++++++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLE-DQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEccccc-ccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            9999999999999998888753 2579999999999996 3455566777888888889999999999999999999986


Q ss_pred             H
Q psy10504        264 R  264 (286)
Q Consensus       264 ~  264 (286)
                      +
T Consensus       159 ~  159 (159)
T cd00154         159 E  159 (159)
T ss_pred             C
Confidence            3

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.94  E-value=3.9e-26  Score=189.38  Aligned_cols=162  Identities=19%  Similarity=0.279  Sum_probs=125.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEE-CCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEV-DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ..+||+++|++|||||||++++..+.+... .+|.+ +.....+.. ++..+.+.+|||||++++..++..+++++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            358999999999999999999998877654 44443 222333333 335677999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh------cCCCEEEEeCCCCCc
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS------WGCPFIEASAKNKTN  254 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~vSa~~~~g  254 (286)
                      +|+|++++.+++....|+..+.......++|+++|+||+|+..   .....+.+.+...      .+++++++||++|.|
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g  157 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN---ALSVSEVEKLLALHELSASTPWHVQPACAIIGEG  157 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc---cCCHHHHHHHhCccccCCCCceEEEEeecccCCC
Confidence            9999999999998888888777655455899999999999862   1223333333221      124688999999999


Q ss_pred             HHHHHHHHHHHhhc
Q psy10504        255 VNEMFAEIVREMNF  268 (286)
Q Consensus       255 v~~l~~~i~~~i~~  268 (286)
                      +++++++|++.+.+
T Consensus       158 i~~l~~~l~~~l~~  171 (183)
T cd04152         158 LQEGLEKLYEMILK  171 (183)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988743

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.94  E-value=4.8e-26  Score=188.74  Aligned_cols=159  Identities=16%  Similarity=0.226  Sum_probs=121.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      ..+||+++|+++||||||++++..+.+.. +.+|++... ..+..+  .+.+++|||||+++++.++..+++++|++|+|
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v   91 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV-ETVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV   91 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce-EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            45899999999999999999998877764 556665332 334444  45599999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-----cCCCEEEEeCCCCCcHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS-----WGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~vSa~~~~gv~~  257 (286)
                      +|++++.++++...++..+.......++|+++|+||.|+.+..   ...+.......     ..+.++++||++|.|+++
T Consensus        92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM---STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC---CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            9999999999888777766543333478999999999986321   22222111111     113467899999999999


Q ss_pred             HHHHHHHHhhc
Q psy10504        258 MFAEIVREMNF  268 (286)
Q Consensus       258 l~~~i~~~i~~  268 (286)
                      +|++|.+.+.+
T Consensus       169 ~~~~l~~~i~~  179 (182)
T PTZ00133        169 GLDWLSANIKK  179 (182)
T ss_pred             HHHHHHHHHHH
Confidence            99999987765

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.94  E-value=8.5e-27  Score=190.03  Aligned_cols=153  Identities=20%  Similarity=0.372  Sum_probs=123.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL  185 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~  185 (286)
                      .|+++|++|||||||++++.++.+...+.+|.+.. .  ..+++..+.+.+||+||+++++.++..+++++|++++|||+
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~-~--~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN-S--VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcc-e--EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            37999999999999999999998888888887632 2  23444556699999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCH----HHHHHHHHhcCCCEEEEeCCC------CCcH
Q psy10504        186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPT----LDGQALAQSWGCPFIEASAKN------KTNV  255 (286)
Q Consensus       186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~vSa~~------~~gv  255 (286)
                      +++.++...+.|+..+...  .+++|+++|+||+|+.. .+....    .+...+++..++.++++||++      ++|+
T Consensus        78 t~~~s~~~~~~~l~~~~~~--~~~~piilv~NK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v  154 (164)
T cd04162          78 ADSERLPLARQELHQLLQH--PPDLPLVVLANKQDLPA-ARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAV  154 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhC--CCCCcEEEEEeCcCCcC-CCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence            9999999998888877643  25899999999999973 232211    223445555678889999998      9999


Q ss_pred             HHHHHHHHH
Q psy10504        256 NEMFAEIVR  264 (286)
Q Consensus       256 ~~l~~~i~~  264 (286)
                      +++|+.++.
T Consensus       155 ~~~~~~~~~  163 (164)
T cd04162         155 KDLLSQLIN  163 (164)
T ss_pred             HHHHHHHhc
Confidence            999998764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG0097|consensus

Probab=99.94  E-value=4.2e-26  Score=174.18  Aligned_cols=164  Identities=33%  Similarity=0.492  Sum_probs=150.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+|-+++|+-|+|||+|++++...+|..+.+.|++ ++....+.+.+..+++++|||+|+++|+...+.|++.+.+.++
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm   89 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   89 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence            568999999999999999999999999999998887 6667788899999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |+|++.+.++..+..|+...... ..|+.-+++++||.|+. +.+.+..++...++++.|..++++||++|+++++.|-.
T Consensus        90 vyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle-~qrdv~yeeak~faeengl~fle~saktg~nvedafle  167 (215)
T KOG0097|consen   90 VYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLE-SQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLE  167 (215)
T ss_pred             EEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhh-hcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHH
Confidence            99999999999999999987774 56788899999999998 78889999999999999999999999999999998876


Q ss_pred             HHHHhhc
Q psy10504        262 IVREMNF  268 (286)
Q Consensus       262 i~~~i~~  268 (286)
                      -.+++-+
T Consensus       168 ~akkiyq  174 (215)
T KOG0097|consen  168 TAKKIYQ  174 (215)
T ss_pred             HHHHHHH
Confidence            6666544

>cd01893 Miro1 Miro1 subfamily

Probab=99.94  E-value=2e-25  Score=182.10  Aligned_cols=161  Identities=27%  Similarity=0.345  Sum_probs=125.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      +||+++|++|||||||++++..+.+...++.+. ........+++..+.+.+|||||++.+...+..++..+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            489999999999999999999998876655443 3334445666777889999999999888888888899999999999


Q ss_pred             CCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC-CHHHHHHHHHhcC--CCEEEEeCCCCCcHHHHHH
Q psy10504        185 LTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQREV-PTLDGQALAQSWG--CPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       185 ~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~--~~~~~vSa~~~~gv~~l~~  260 (286)
                      ++++.+++.+. .|...+....  +++|+++|+||+|+.+..... ...+...+.+.+.  .++++|||++|.|++++|+
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            99999999986 5666666532  489999999999997332211 1222333333333  4799999999999999999


Q ss_pred             HHHHHhhc
Q psy10504        261 EIVREMNF  268 (286)
Q Consensus       261 ~i~~~i~~  268 (286)
                      .+.+.+..
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99887653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04157 Arl6 Arl6 subfamily

Probab=99.94  E-value=3.3e-26  Score=185.13  Aligned_cols=153  Identities=21%  Similarity=0.273  Sum_probs=116.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc-CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGC-FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      +|+++|++|||||||++++.++. +...+.+|++.. ...+..+  .+.+++|||||++++..++..+++.+|++++|+|
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~-~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   77 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFN-VESFEKG--NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID   77 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccc-eEEEEEC--CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence            58999999999999999999875 455666776532 2233333  4558999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHh--CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH---HH--hcCCCEEEEeCCCCCcHHH
Q psy10504        185 LTNHHTFQDIKQMKELITRVK--GSERVPILLVANKLDLASHQREVPTLDGQAL---AQ--SWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       185 ~~~~~s~~~~~~~~~~i~~~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~---~~--~~~~~~~~vSa~~~~gv~~  257 (286)
                      ++++.++.....|+..+....  ...++|+++|+||+|+.+...   ..+....   ..  ...++++++||++|.|+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~---~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          78 SSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT---AVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             CCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC---HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            999999988888877765532  124799999999999973221   1221111   11  1124589999999999999


Q ss_pred             HHHHHHH
Q psy10504        258 MFAEIVR  264 (286)
Q Consensus       258 l~~~i~~  264 (286)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.94  E-value=7.2e-26  Score=185.06  Aligned_cols=155  Identities=20%  Similarity=0.292  Sum_probs=121.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL  185 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~  185 (286)
                      +|+++|++|||||||++++.+. +...+.+|.+.. ...+..++  +.+++||+||+++++.++..+++++|++++|||+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            4899999999999999999976 666677776643 34555554  4589999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHH---HHHHHHhcC--CCEEEEeCCCC------Cc
Q psy10504        186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLD---GQALAQSWG--CPFIEASAKNK------TN  254 (286)
Q Consensus       186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~---~~~~~~~~~--~~~~~vSa~~~------~g  254 (286)
                      +++.+++++..|+..+.......++|+++|+||+|+++........+   .+.+++..+  +.+++|||++|      .|
T Consensus        77 s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g  156 (167)
T cd04161          77 SDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPS  156 (167)
T ss_pred             CchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccC
Confidence            99999999999988887654445899999999999973322111111   122222222  56788999998      89


Q ss_pred             HHHHHHHHHH
Q psy10504        255 VNEMFAEIVR  264 (286)
Q Consensus       255 v~~l~~~i~~  264 (286)
                      +++.|+||..
T Consensus       157 ~~~~~~wl~~  166 (167)
T cd04161         157 IVEGLRWLLA  166 (167)
T ss_pred             HHHHHHHHhc
Confidence            9999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.93  E-value=1.4e-24  Score=184.65  Aligned_cols=166  Identities=30%  Similarity=0.545  Sum_probs=139.3

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ....+||+++|++|||||||+++++.+.+...+.+|.+ +.....+..++..+.+.+|||+|+++|..++..++..++++
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~   85 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA   85 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence            44669999999999999999999998888888877776 33344555678888999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      ++|||+++..++..+..|+..+....  +++|+++++||+|+.+  +..... ...+.+..++.++++||++|.|++++|
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~--~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f  160 (215)
T PTZ00132         86 IIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKD--RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPF  160 (215)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCcc--ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999998887643  5799999999999862  222222 335666778899999999999999999


Q ss_pred             HHHHHHhhcCCC
Q psy10504        260 AEIVREMNFNPE  271 (286)
Q Consensus       260 ~~i~~~i~~~~~  271 (286)
                      .+|++.+...+.
T Consensus       161 ~~ia~~l~~~p~  172 (215)
T PTZ00132        161 LWLARRLTNDPN  172 (215)
T ss_pred             HHHHHHHhhccc
Confidence            999999876554

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.93  E-value=3e-25  Score=182.53  Aligned_cols=155  Identities=21%  Similarity=0.292  Sum_probs=120.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      ..+||+++|++|+|||||++++..+.+.. +.+|.+... ..+..++  +.+.+||+||++++...+..+++.+|++++|
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV-EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce-EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            45899999999999999999999887765 455554332 3444554  4589999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH-HHHH----HhcCCCEEEEeCCCCCcHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG-QALA----QSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~~~vSa~~~~gv~~  257 (286)
                      +|++++.++.....++..+.......++|+++++||+|+...   .+..+. +.+.    +..++++++|||++|.|+++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA---MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            999999888888877777655433457999999999998631   122222 2221    12345789999999999999


Q ss_pred             HHHHHHH
Q psy10504        258 MFAEIVR  264 (286)
Q Consensus       258 l~~~i~~  264 (286)
                      +|++|.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999975

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd00879 Sar1 Sar1 subfamily

Probab=99.93  E-value=5.2e-25  Score=183.36  Aligned_cols=158  Identities=20%  Similarity=0.285  Sum_probs=124.7

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .+..||+++|++|||||||++++.++.+. .+.+|.+. ....+.+++..  +.+||+||+..+..++..+++.+|++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~-~~~~i~~~~~~--~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP-TSEELTIGNIK--FKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc-ceEEEEECCEE--EEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            35789999999999999999999987764 45555543 33455666644  8899999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh----------------cCCCEE
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS----------------WGCPFI  245 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~  245 (286)
                      |+|+++..+++....++..+.......+.|+++++||+|+..   .....+.+.....                ..++++
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG---AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC---CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            999999988888888887776544445799999999999862   3334444444322                124689


Q ss_pred             EEeCCCCCcHHHHHHHHHHHh
Q psy10504        246 EASAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       246 ~vSa~~~~gv~~l~~~i~~~i  266 (286)
                      +|||++|+|++++|+||.+.+
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             EeEecCCCChHHHHHHHHhhC
Confidence            999999999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04151 Arl1 Arl1 subfamily

Probab=99.93  E-value=1.1e-25  Score=181.92  Aligned_cols=152  Identities=16%  Similarity=0.226  Sum_probs=113.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL  185 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~  185 (286)
                      ||+++|++++|||||++++..+.+.. +.+|++.. ...+...+  +.+++|||||++.+..++..+++.+|++++|+|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFN-VETVTYKN--LKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            68999999999999999998877654 44554422 22344443  4589999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH-HHHHH----hcCCCEEEEeCCCCCcHHHHHH
Q psy10504        186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG-QALAQ----SWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +++.++.....++..+.+.....++|+++|+||+|+.+..   ...+. ..+..    ..+.+++++||++|.|++++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL---SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC---CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9988877766666554432333579999999999986322   11222 11111    1124699999999999999999


Q ss_pred             HHHH
Q psy10504        261 EIVR  264 (286)
Q Consensus       261 ~i~~  264 (286)
                      +|++
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.93  E-value=1.8e-25  Score=180.68  Aligned_cols=153  Identities=20%  Similarity=0.300  Sum_probs=117.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL  185 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~  185 (286)
                      +|+++|++|+|||||++++.++.+... .+|.+.. ...+... ..+.+.+|||||++.+..++..+++.+|++++|+|+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~-~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFN-VEMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcc-eEEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            589999999999999999999887643 4454422 2333333 346699999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH------HHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL------AQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      +++.++.....|+..+.......+.|+++|+||+|+....   ...+....      ....++++++|||++|+|++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL---TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc---CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            9999899888888777654333589999999999996221   12222111      11123568999999999999999


Q ss_pred             HHHHH
Q psy10504        260 AEIVR  264 (286)
Q Consensus       260 ~~i~~  264 (286)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.93  E-value=6.5e-25  Score=178.65  Aligned_cols=153  Identities=28%  Similarity=0.360  Sum_probs=116.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC------CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCF------MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      +|+++|++|+|||||++++.+...      ...+.+|.+.. ...+.+++.  .+.+|||||++.+..++..+++.+|++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~   77 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLN-IGTIEVGNA--RLKFWDLGGQESLRSLWDKYYAECHAI   77 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccc-eEEEEECCE--EEEEEECCCChhhHHHHHHHhCCCCEE
Confidence            589999999999999999986422      12233333322 234555544  489999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-------cCCCEEEEeCCCC
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS-------WGCPFIEASAKNK  252 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~vSa~~~  252 (286)
                      ++|+|++++.++.....|+..+.......++|+++++||+|+...   ....+.....+.       .+++++++||++|
T Consensus        78 v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          78 IYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA---LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC---CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            999999999888888888887766544568999999999998632   222333333222       2357999999999


Q ss_pred             CcHHHHHHHHHH
Q psy10504        253 TNVNEMFAEIVR  264 (286)
Q Consensus       253 ~gv~~l~~~i~~  264 (286)
                      .|++++++||.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999975

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.92  E-value=3.2e-24  Score=178.12  Aligned_cols=157  Identities=17%  Similarity=0.215  Sum_probs=120.3

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .+.++|+++|.+|||||||++++.++.+.. +.+|.+. ....+..++  +.+.+||+||++.++.++..+++++|++++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP-TSEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc-ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            356899999999999999999999876643 3344332 233444554  448899999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh------------cCCCEEEEeC
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS------------WGCPFIEASA  249 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~vSa  249 (286)
                      |+|++++.+++....++..+.......++|+++|+||+|++.   ..+..+.......            ....+++|||
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~---~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY---AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC---CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            999999998988888777766543445899999999999862   2233333322110            1245899999


Q ss_pred             CCCCcHHHHHHHHHHH
Q psy10504        250 KNKTNVNEMFAEIVRE  265 (286)
Q Consensus       250 ~~~~gv~~l~~~i~~~  265 (286)
                      ++|.|++++++||.++
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999875

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.92  E-value=3.5e-24  Score=179.99  Aligned_cols=148  Identities=22%  Similarity=0.333  Sum_probs=122.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccc-eEEEEEEEC-----CeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FYRKEIEVD-----KAPCVLEILDTAGTEQFASMRDLYIKNGQG  178 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~-----~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~  178 (286)
                      +||+++|+.++|||||++++..+.+...+.+|++. .....+.++     +..+.+.+|||+|+++|..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            58999999999999999999999999888888863 333445553     567889999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHHh------------------CCCCCcEEEEEeCCCCCCCCCCCCHH----HHHHH
Q psy10504        179 FVVVYSLTNHHTFQDIKQMKELITRVK------------------GSERVPILLVANKLDLASHQREVPTL----DGQAL  236 (286)
Q Consensus       179 vilv~d~~~~~s~~~~~~~~~~i~~~~------------------~~~~~piivv~nK~Dl~~~~~~~~~~----~~~~~  236 (286)
                      +|+|||++++.+++++..|+..+....                  ...++|+++|+||.|+.+ ++.....    ....+
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~-~r~~~~~~~~~~~~~i  159 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP-EKESSGNLVLTARGFV  159 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh-hcccchHHHhhHhhhH
Confidence            999999999999999999999987632                  224789999999999973 3332222    34567


Q ss_pred             HHhcCCCEEEEeCCCCC
Q psy10504        237 AQSWGCPFIEASAKNKT  253 (286)
Q Consensus       237 ~~~~~~~~~~vSa~~~~  253 (286)
                      +++.+.+.++.++++..
T Consensus       160 a~~~~~~~i~~~c~~~~  176 (202)
T cd04102         160 AEQGNAEEINLNCTNGR  176 (202)
T ss_pred             HHhcCCceEEEecCCcc
Confidence            88899999999998653

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.92  E-value=5e-24  Score=175.54  Aligned_cols=158  Identities=26%  Similarity=0.394  Sum_probs=127.0

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .+..+|+++|..||||||+++++..+.+.. ..||.+ +....+.+.+..  +.+||.+|+..++.+|..|++++|++|+
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g-~~~~~i~~~~~~--~~~~d~gG~~~~~~~w~~y~~~~~~iIf   87 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG-FNIEEIKYKGYS--LTIWDLGGQESFRPLWKSYFQNADGIIF   87 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS-EEEEEEEETTEE--EEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc-cccceeeeCcEE--EEEEeccccccccccceeeccccceeEE
Confidence            478999999999999999999999865443 455554 344556666665  8999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH------hcCCCEEEEeCCCCCcH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ------SWGCPFIEASAKNKTNV  255 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~vSa~~~~gv  255 (286)
                      |+|++|...+.+....+..+.......++|++|++||+|+++.   ....+......      ...+.++.|||.+|+|+
T Consensus        88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~---~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv  164 (175)
T PF00025_consen   88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA---MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV  164 (175)
T ss_dssp             EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS---STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred             EEecccceeecccccchhhhcchhhcccceEEEEeccccccCc---chhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence            9999999999999888888776555568999999999998732   23333333222      12355899999999999


Q ss_pred             HHHHHHHHHHh
Q psy10504        256 NEMFAEIVREM  266 (286)
Q Consensus       256 ~~l~~~i~~~i  266 (286)
                      .+.++||.+.+
T Consensus       165 ~e~l~WL~~~~  175 (175)
T PF00025_consen  165 DEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999865

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.92  E-value=2e-24  Score=174.28  Aligned_cols=152  Identities=18%  Similarity=0.283  Sum_probs=118.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL  185 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~  185 (286)
                      ||+++|++|+|||||+++++++.+ ..+.++.+. ....+.+.+  +.+.+||+||++.+...+..+++.+|++++|||+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~-~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGF-NVETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCc-ceEEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            689999999999999999999873 334444432 233344444  4589999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----hcCCCEEEEeCCCCCcHHHHHH
Q psy10504        186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-----SWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +++.++.....|+..+.......+.|+++|+||+|+....   ...+......     ...++++++||++|.|++++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc---CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            9999999998888877665445689999999999987322   1222222211     2336799999999999999999


Q ss_pred             HHHH
Q psy10504        261 EIVR  264 (286)
Q Consensus       261 ~i~~  264 (286)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01890 LepA LepA subfamily

Probab=99.92  E-value=6.1e-24  Score=174.97  Aligned_cols=154  Identities=20%  Similarity=0.271  Sum_probs=113.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc-------CCCccCCCcc-------ceEE--EEEEE---CCeEEEEEEEeCCCcccch
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGC-------FMEKYDPTIE-------DFYR--KEIEV---DKAPCVLEILDTAGTEQFA  166 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~-------~~~~~~~t~~-------~~~~--~~~~~---~~~~~~l~l~DtpG~~~~~  166 (286)
                      +|+++|++++|||||+++|++..       +...+.++..       +...  ..+.+   ++..+.+++|||||+++|.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998732       1122222210       1111  12222   5667779999999999999


Q ss_pred             hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC---C
Q psy10504        167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC---P  243 (286)
Q Consensus       167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~  243 (286)
                      .++..+++.+|++++|+|++++.+.+....|.....     .++|+++|+||+|+.+. .  .......+++..++   .
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~~-~--~~~~~~~~~~~~~~~~~~  153 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE-----NNLEIIPVINKIDLPSA-D--PERVKQQIEDVLGLDPSE  153 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-----cCCCEEEEEECCCCCcC-C--HHHHHHHHHHHhCCCccc
Confidence            999999999999999999999877777666644322     27899999999998631 1  12223455555565   4


Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        244 FIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       244 ~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      ++++||++|.|++++|+++.+.++
T Consensus       154 ~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         154 AILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             EEEeeccCCCCHHHHHHHHHhhCC
Confidence            899999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.92  E-value=6.3e-24  Score=170.23  Aligned_cols=153  Identities=20%  Similarity=0.306  Sum_probs=120.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL  185 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~  185 (286)
                      .|+++|++|+|||||++++.+..+...+.++.+... ..+..++  +.+.+||+||++.+..++..+++.+|++++|+|+
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNM-RKVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcce-EEEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            379999999999999999999988888888776333 2344444  5599999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHH-HH----HHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQ-AL----AQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      ++..++.....++..+.......++|+++|+||+|+.... .  ..+.. .+    ......+++++||++|.|++++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL-S--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc-C--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            9988888887777776654444588999999999986321 1  11111 11    111235789999999999999999


Q ss_pred             HHHH
Q psy10504        261 EIVR  264 (286)
Q Consensus       261 ~i~~  264 (286)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9975

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PTZ00099 rab6; Provisional

Probab=99.91  E-value=2.8e-23  Score=171.13  Aligned_cols=144  Identities=33%  Similarity=0.502  Sum_probs=125.6

Q ss_pred             CcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHh
Q psy10504        127 GCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVK  205 (286)
Q Consensus       127 ~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~  205 (286)
                      +.|...+.+|++ ++....+.+++..+.+.||||||++++..++..+++++|++|+|||++++.+++.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            456778888887 6666778889999999999999999999999999999999999999999999999999999887643


Q ss_pred             CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCC
Q psy10504        206 GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEK  272 (286)
Q Consensus       206 ~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~  272 (286)
                       .+++|+++|+||+|+. ..+.+...+...++...++.+++|||++|.|++++|++|++.+++.++.
T Consensus        83 -~~~~piilVgNK~DL~-~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         83 -GKDVIIALVGNKTDLG-DLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             -CCCCeEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence             3578999999999997 3455677778888888889999999999999999999999999875544

>KOG0073|consensus

Probab=99.91  E-value=1.4e-23  Score=164.20  Aligned_cols=164  Identities=23%  Similarity=0.321  Sum_probs=133.0

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ..++++|.++|..|+||||++++|.+.. ++...||. .+...++.+++.+  +++||.+||..+++.|+.|+..+|++|
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~-gf~Iktl~~~~~~--L~iwDvGGq~~lr~~W~nYfestdglI   88 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTL-GFQIKTLEYKGYT--LNIWDVGGQKTLRSYWKNYFESTDGLI   88 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCcc-ceeeEEEEecceE--EEEEEcCCcchhHHHHHHhhhccCeEE
Confidence            3468999999999999999999998764 33334443 4555666666666  999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC---CCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE---VPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      +|+|++|+..+++....+..+..-....+.|++|++||.|+++.-..   ......+.+++...++++.|||.+|+++.+
T Consensus        89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~  168 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLE  168 (185)
T ss_pred             EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHH
Confidence            99999999999998887777665555568999999999999733221   122334555667779999999999999999


Q ss_pred             HHHHHHHHhhc
Q psy10504        258 MFAEIVREMNF  268 (286)
Q Consensus       258 l~~~i~~~i~~  268 (286)
                      .++|+++.+.+
T Consensus       169 gidWL~~~l~~  179 (185)
T KOG0073|consen  169 GIDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHHH
Confidence            99999998876

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.91  E-value=3.7e-23  Score=168.42  Aligned_cols=155  Identities=15%  Similarity=0.196  Sum_probs=107.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCC-ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh---------hhhccc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFME-KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM---------RDLYIK  174 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~---------~~~~~~  174 (286)
                      ++|+++|++|+|||||++++.+..+.. .++.++.+........++  +.+++|||||+......         ......
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY--LRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc--eEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            479999999999999999999987642 233333333333333333  45999999998431110         001122


Q ss_pred             CccEEEEEEECCCccc--HHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504        175 NGQGFVVVYSLTNHHT--FQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK  252 (286)
Q Consensus       175 ~~d~vilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~  252 (286)
                      .+|++++|+|+++..+  ++....|+..+...  ..+.|+++|+||+|+.. .....  ....+....+.+++++||++|
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~-~~~~~--~~~~~~~~~~~~~~~~Sa~~~  153 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLT-FEDLS--EIEEEEELEGEEVLKISTLTE  153 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCc-hhhHH--HHHHhhhhccCceEEEEeccc
Confidence            3689999999998765  35566677776553  24789999999999973 22221  134445555688999999999


Q ss_pred             CcHHHHHHHHHHHh
Q psy10504        253 TNVNEMFAEIVREM  266 (286)
Q Consensus       253 ~gv~~l~~~i~~~i  266 (286)
                      .|++++++++.+.+
T Consensus       154 ~gi~~l~~~l~~~~  167 (168)
T cd01897         154 EGVDEVKNKACELL  167 (168)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01898 Obg Obg subfamily

Probab=99.91  E-value=4.8e-23  Score=168.02  Aligned_cols=157  Identities=20%  Similarity=0.240  Sum_probs=112.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCC-CccCCCccceEEEEEEECCeEEEEEEEeCCCcc----cchhhhhhc---ccCcc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE----QFASMRDLY---IKNGQ  177 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~----~~~~~~~~~---~~~~d  177 (286)
                      .|+++|++|||||||++++.+.... ...++++.+.....+..++. ..+.+|||||+.    .+..+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            5899999999999999999975442 23333433333344445554 248999999974    222233333   34699


Q ss_pred             EEEEEEECCCc-ccHHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-cCCCEEEEeCCCCCc
Q psy10504        178 GFVVVYSLTNH-HTFQDIKQMKELITRVKG-SERVPILLVANKLDLASHQREVPTLDGQALAQS-WGCPFIEASAKNKTN  254 (286)
Q Consensus       178 ~vilv~d~~~~-~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~g  254 (286)
                      ++++|+|++++ .+++.+..|...+..... ..++|+++|+||+|+.+. ... ......+... .+.+++++||+++.|
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~g  158 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE-EEL-FELLKELLKELWGKPVFPISALTGEG  158 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc-hhh-HHHHHHHHhhCCCCCEEEEecCCCCC
Confidence            99999999999 789998888888776431 247899999999999632 222 2333344444 368899999999999


Q ss_pred             HHHHHHHHHHH
Q psy10504        255 VNEMFAEIVRE  265 (286)
Q Consensus       255 v~~l~~~i~~~  265 (286)
                      ++++|+++.+.
T Consensus       159 i~~l~~~i~~~  169 (170)
T cd01898         159 LDELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04155 Arl3 Arl3 subfamily

Probab=99.91  E-value=6.2e-23  Score=168.03  Aligned_cols=153  Identities=22%  Similarity=0.319  Sum_probs=117.0

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .+.++|+++|++|+|||||++++.+..+.. +.++.+ .....+..++..  +.+||+||+.++...+..+++.+|++++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g-~~~~~i~~~~~~--~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQG-FNIKTVQSDGFK--LNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCC-cceEEEEECCEE--EEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            357999999999999999999999875532 334433 223345556544  8899999999998889999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--------CCEEEEeCCCCC
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG--------CPFIEASAKNKT  253 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~vSa~~~~  253 (286)
                      |+|+++..++.....++..+.......++|+++++||+|+.+..   ..   +.+.+..+        .+++++||++|+
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~---~~i~~~l~~~~~~~~~~~~~~~Sa~~~~  161 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA---PA---EEIAEALNLHDLRDRTWHIQACSAKTGE  161 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC---CH---HHHHHHcCCcccCCCeEEEEEeECCCCC
Confidence            99999988888887777666554334579999999999986321   11   22223333        247899999999


Q ss_pred             cHHHHHHHHHH
Q psy10504        254 NVNEMFAEIVR  264 (286)
Q Consensus       254 gv~~l~~~i~~  264 (286)
                      |++++|+||++
T Consensus       162 gi~~~~~~l~~  172 (173)
T cd04155         162 GLQEGMNWVCK  172 (173)
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=2e-22  Score=181.26  Aligned_cols=164  Identities=18%  Similarity=0.176  Sum_probs=124.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEE-CCeEEEEEEEeCCCccc----chhhh---hhcccC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEV-DKAPCVLEILDTAGTEQ----FASMR---DLYIKN  175 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~-~~~~~~l~l~DtpG~~~----~~~~~---~~~~~~  175 (286)
                      ..|+|+|.||||||||++++..... ...++.|+.......+.+ ++..  +++||+||..+    ...+.   .+.++.
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~--~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKS--FVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcE--EEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            4689999999999999999997543 466777777776766766 3445  88999999643    11233   334567


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy10504        176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTN  254 (286)
Q Consensus       176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g  254 (286)
                      ++++++|+|+++..+++++..|...+..+.. ..++|+++|+||+|+.+. ........+.+....+.+++++||++++|
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~-~~~~~~~~~~~~~~~~~~i~~iSAktg~G  315 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE-EEEREKRAALELAALGGPVFLISAVTGEG  315 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc-hhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence            9999999999998889999999888877532 247899999999999732 22222334444455668999999999999


Q ss_pred             HHHHHHHHHHHhhcCCC
Q psy10504        255 VNEMFAEIVREMNFNPE  271 (286)
Q Consensus       255 v~~l~~~i~~~i~~~~~  271 (286)
                      +++++++|.+.+.+.++
T Consensus       316 I~eL~~~L~~~l~~~~~  332 (335)
T PRK12299        316 LDELLRALWELLEEARR  332 (335)
T ss_pred             HHHHHHHHHHHHHhhhc
Confidence            99999999998876544

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.90  E-value=8.3e-23  Score=195.67  Aligned_cols=207  Identities=20%  Similarity=0.224  Sum_probs=136.2

Q ss_pred             ecccccCCcchhhHHHHHhh----hhhhhhhhhhhccccCcccccceeecceeeccCCCCCCCCCCCCCCcceEEEEEEC
Q psy10504         36 ISKFPIPMGREMEIYAYYQG----LVTIEVCHLLYKISSHTASWSLFVILSVFLVPTDLLPRCSIDNSFTMREFKVVVLG  111 (286)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~ivG  111 (286)
                      |++.++.+|.+..+++.++.    +...++.+...........            ..... ....+.....+.++|+++|
T Consensus        28 ~~~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~-~~~~~~~~~~r~p~V~I~G   94 (587)
T TIGR00487        28 IIKKLMLLGVMVTINQVLDKETAELVAEEFGVKVEVRVTLEET------------EAEEQ-DEDSGDLLVERPPVVTIMG   94 (587)
T ss_pred             HHHHHHHCCCEecCCcCcCHHHHHHHHHHhCCceEEeccchhh------------hhhcc-ccccccccccCCCEEEEEC
Confidence            56778889988888777763    3333443322211110000            00000 0111223456778999999


Q ss_pred             CCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCccc
Q psy10504        112 SGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHT  190 (286)
Q Consensus       112 ~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s  190 (286)
                      ++++|||||+++|.+..+...+.++++ +.....+.+++.. .++|||||||++|..++.+++..+|++++|+|++++..
T Consensus        95 hvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~  173 (587)
T TIGR00487        95 HVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVM  173 (587)
T ss_pred             CCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCC
Confidence            999999999999999887766555443 3333445554441 48999999999999999999999999999999998654


Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH-------HHhcC--CCEEEEeCCCCCcHHHHHHH
Q psy10504        191 FQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL-------AQSWG--CPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       191 ~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-------~~~~~--~~~~~vSa~~~~gv~~l~~~  261 (286)
                      .+....+    ... ...++|+++++||+|+.+..    .......       ...++  .+++++||++|.|+++++++
T Consensus       174 ~qT~e~i----~~~-~~~~vPiIVviNKiDl~~~~----~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~  244 (587)
T TIGR00487       174 PQTIEAI----SHA-KAANVPIIVAINKIDKPEAN----PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDM  244 (587)
T ss_pred             HhHHHHH----HHH-HHcCCCEEEEEECcccccCC----HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHh
Confidence            4433322    211 12378999999999996322    1112111       12222  57999999999999999999


Q ss_pred             HHHH
Q psy10504        262 IVRE  265 (286)
Q Consensus       262 i~~~  265 (286)
                      |...
T Consensus       245 I~~~  248 (587)
T TIGR00487       245 ILLQ  248 (587)
T ss_pred             hhhh
Confidence            9754

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>KOG0070|consensus

Probab=99.90  E-value=4.2e-23  Score=165.52  Aligned_cols=166  Identities=18%  Similarity=0.292  Sum_probs=133.0

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      +...+.+|+++|..++||||++.+|..+.+... .||++. ....+.+.+..  |++||.+||++++.+|..|+++++++
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGf-nVE~v~ykn~~--f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGF-NVETVEYKNIS--FTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccc-ceeEEEEcceE--EEEEecCCCcccccchhhhccCCcEE
Confidence            345789999999999999999999999888776 677753 34455666555  99999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH--hcCCCEEEEeCCCCCcHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ--SWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~vSa~~~~gv~~  257 (286)
                      |+|+|.+|++.+.+.+..+..+.......+.|+++.+||.|++++-......+...+..  .....+..|+|.+|+|+.+
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e  168 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE  168 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence            99999999999999998888887766667899999999999984433211111111111  1235678999999999999


Q ss_pred             HHHHHHHHhhcC
Q psy10504        258 MFAEIVREMNFN  269 (286)
Q Consensus       258 l~~~i~~~i~~~  269 (286)
                      .++|+.+.+...
T Consensus       169 gl~wl~~~~~~~  180 (181)
T KOG0070|consen  169 GLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHhcc
Confidence            999999988753

>KOG4252|consensus

Probab=99.90  E-value=8.2e-25  Score=173.37  Aligned_cols=165  Identities=28%  Similarity=0.483  Sum_probs=150.2

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      .+.+|++|+|..++||||+++++|.+.|..++..|++ ++....+.+.+..+.+.+|||+|+++|+.+...||++|.+.+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            3679999999999999999999999999999998887 666667777777777889999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +||+-+|..+|+....|.+.+...  ...+|.++|-||+|+. ++......+.+.+++.....++.+|++...|+..+|.
T Consensus        98 LVFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlv-eds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~  174 (246)
T KOG4252|consen   98 LVFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLV-EDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFA  174 (246)
T ss_pred             EEEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccchhh-HhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHH
Confidence            999999999999999999999874  4589999999999998 6667788889999999999999999999999999999


Q ss_pred             HHHHHhhcC
Q psy10504        261 EIVREMNFN  269 (286)
Q Consensus       261 ~i~~~i~~~  269 (286)
                      .+++++.+.
T Consensus       175 YLaeK~~q~  183 (246)
T KOG4252|consen  175 YLAEKLTQQ  183 (246)
T ss_pred             HHHHHHHHH
Confidence            999886543

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.90  E-value=4.3e-23  Score=202.12  Aligned_cols=202  Identities=20%  Similarity=0.248  Sum_probs=137.7

Q ss_pred             ecccccCCcchhhHHHHHhh----hhhhhhhhhhhccccCcccccceeecceeeccCCCCCCCCCCCCCCcceEEEEEEC
Q psy10504         36 ISKFPIPMGREMEIYAYYQG----LVTIEVCHLLYKISSHTASWSLFVILSVFLVPTDLLPRCSIDNSFTMREFKVVVLG  111 (286)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~ivG  111 (286)
                      |++.++.+|.+..+++.++.    +...++.+........                  .   .........+.+.|+++|
T Consensus       239 ii~~l~~~g~~~~~n~~l~~~~~~~i~~e~g~~~~~~~~~------------------~---~~~~~~~~~R~pvV~ImG  297 (787)
T PRK05306        239 VIKKLFKLGVMATINQSLDQETAELLAEEFGHEVKLVSLL------------------E---DDDEEDLVPRPPVVTIMG  297 (787)
T ss_pred             HHHHHHHcCCeecCCCccCHHHHHHHHHHcCCEEEEcccc------------------c---cccccccccCCCEEEEEC
Confidence            57778888988888887773    3333444332222111                  0   111223456889999999


Q ss_pred             CCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCccc
Q psy10504        112 SGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHT  190 (286)
Q Consensus       112 ~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s  190 (286)
                      ++++|||||+++|..+.+...+.++++ +.....+.+++..  ++|||||||+.|..++.++++.+|++|+|+|++++..
T Consensus       298 hvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~--ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~  375 (787)
T PRK05306        298 HVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGK--ITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVM  375 (787)
T ss_pred             CCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEE--EEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCC
Confidence            999999999999998877665544433 2223455565544  8999999999999999999999999999999998654


Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHH---HHHHHHhcC--CCEEEEeCCCCCcHHHHHHHHHHH
Q psy10504        191 FQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLD---GQALAQSWG--CPFIEASAKNKTNVNEMFAEIVRE  265 (286)
Q Consensus       191 ~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~---~~~~~~~~~--~~~~~vSa~~~~gv~~l~~~i~~~  265 (286)
                      .+....|    ... ...++|+||++||+|+..........+   ...+...++  ++++++||++|.|+++++++|...
T Consensus       376 ~qT~e~i----~~a-~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        376 PQTIEAI----NHA-KAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             HhHHHHH----HHH-HhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence            3333332    221 123799999999999963221100011   111233344  789999999999999999999864

>PLN00023 GTP-binding protein; Provisional

Probab=99.89  E-value=2.6e-22  Score=177.19  Aligned_cols=143  Identities=23%  Similarity=0.349  Sum_probs=119.3

Q ss_pred             CCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccc-eEEEEEEEC-------------CeEEEEEEEeCCCccc
Q psy10504         99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FYRKEIEVD-------------KAPCVLEILDTAGTEQ  164 (286)
Q Consensus        99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~-------------~~~~~l~l~DtpG~~~  164 (286)
                      -.+...+||+++|+.|||||||+++|.++.+...+.+|++. +....+.++             +..+.++||||+|+++
T Consensus        16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr   95 (334)
T PLN00023         16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER   95 (334)
T ss_pred             CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence            34667899999999999999999999999998888888874 334445553             3567899999999999


Q ss_pred             chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhC-----------CCCCcEEEEEeCCCCCCCC--CC---C
Q psy10504        165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-----------SERVPILLVANKLDLASHQ--RE---V  228 (286)
Q Consensus       165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piivv~nK~Dl~~~~--~~---~  228 (286)
                      |..++..++++++++|+|||+++..+++++..|+..+.....           ..++|++||+||+|+....  +.   +
T Consensus        96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~  175 (334)
T PLN00023         96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN  175 (334)
T ss_pred             hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence            999999999999999999999999999999999999987531           1258999999999996332  22   3


Q ss_pred             CHHHHHHHHHhcC
Q psy10504        229 PTLDGQALAQSWG  241 (286)
Q Consensus       229 ~~~~~~~~~~~~~  241 (286)
                      ..++++.+++..+
T Consensus       176 ~~e~a~~~A~~~g  188 (334)
T PLN00023        176 LVDAARQWVEKQG  188 (334)
T ss_pred             cHHHHHHHHHHcC
Confidence            5778889998887

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.89  E-value=7.8e-22  Score=157.27  Aligned_cols=157  Identities=29%  Similarity=0.470  Sum_probs=122.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      .+||+++|++|+|||||++++....+...+.++++ +.....+..++..+.+.+||+||+.++..++..+.+.++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999887666655554 44444567777667799999999999999999999999999999


Q ss_pred             EECCCc-ccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        183 YSLTNH-HTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       183 ~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|.... .++.... .|...+...... +.|+++++||+|+....  ........+......+++++||++|.|++++++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~  157 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFK  157 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch--hhHHHHHHHhhccCCceEEeecCCCCCHHHHHH
Confidence            999877 6666655 566666554322 88999999999997322  333333444444557899999999999999999


Q ss_pred             HHH
Q psy10504        261 EIV  263 (286)
Q Consensus       261 ~i~  263 (286)
                      +|-
T Consensus       158 ~l~  160 (161)
T TIGR00231       158 IVE  160 (161)
T ss_pred             Hhh
Confidence            863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.89  E-value=2.3e-22  Score=163.50  Aligned_cols=158  Identities=19%  Similarity=0.183  Sum_probs=109.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEEC-CeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD-KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      .|+++|++|+|||||+++|..+.+...+.++++ +.....+..+ +....+.+|||||+..|..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            589999999999999999999877665443332 2222333333 12445899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH----h--cCCCEEEEeCCCCCcHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ----S--WGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~----~--~~~~~~~vSa~~~~gv~~  257 (286)
                      |++++...+.... +..+..    .++|+++|+||+|+.+............+..    .  ..++++++||++|.|+++
T Consensus        82 d~~~~~~~~~~~~-~~~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (168)
T cd01887          82 AADDGVMPQTIEA-IKLAKA----ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDD  156 (168)
T ss_pred             ECCCCccHHHHHH-HHHHHH----cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHH
Confidence            9998653332222 222222    3789999999999863221100111111111    1  136899999999999999


Q ss_pred             HHHHHHHHhhc
Q psy10504        258 MFAEIVREMNF  268 (286)
Q Consensus       258 l~~~i~~~i~~  268 (286)
                      ++++|.+...+
T Consensus       157 l~~~l~~~~~~  167 (168)
T cd01887         157 LLEAILLLAEK  167 (168)
T ss_pred             HHHHHHHhhhc
Confidence            99999887643

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.89  E-value=7.7e-23  Score=198.70  Aligned_cols=217  Identities=21%  Similarity=0.225  Sum_probs=137.2

Q ss_pred             EecccccCCcchhhHHHHHhh----hhhhhhhhhhhccccCcccccceeecceeeccCCCCCCCCCCCCCCcceEEEEEE
Q psy10504         35 SISKFPIPMGREMEIYAYYQG----LVTIEVCHLLYKISSHTASWSLFVILSVFLVPTDLLPRCSIDNSFTMREFKVVVL  110 (286)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~iv  110 (286)
                      .|++.|+.+|.+..+.++++.    ++..++.+...........        .+...  .......+.....+.++|+++
T Consensus       181 ~ii~~l~~~g~~~~~n~~l~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~l~~r~p~V~Iv  250 (742)
T CHL00189        181 EIIKSLFLKGISVTVNQIIDISIISQVADDFGINIISEEKNNIN--------EKTSN--LDNTSAFTENSINRPPIVTIL  250 (742)
T ss_pred             HHHHHHHHcCcCccCCCccCHHHHHHHHHHcCCeEEEeccchhh--------hhhhc--ccccccchhhhcccCCEEEEE
Confidence            367788889998888887773    3333333222111110000        00000  000000122345577899999


Q ss_pred             CCCCCcHHHHHHHHhcCcCCCccCCCcc-c--eEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCC
Q psy10504        111 GSGGVGKSALTVQFVSGCFMEKYDPTIE-D--FYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTN  187 (286)
Q Consensus       111 G~~~~GKTSLi~~l~~~~~~~~~~~t~~-~--~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~  187 (286)
                      |++++|||||+++|....+.....++++ +  .....+..++....++|||||||+.|..++.++++.+|++++|+|+++
T Consensus       251 GhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~d  330 (742)
T CHL00189        251 GHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADD  330 (742)
T ss_pred             CCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcC
Confidence            9999999999999998777655444333 1  122233333445669999999999999999999999999999999998


Q ss_pred             cccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH---HHHhcC--CCEEEEeCCCCCcHHHHHHHH
Q psy10504        188 HHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA---LAQSWG--CPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       188 ~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~--~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      +...+....+.. +.    ..++|+|+++||+|+..........+...   +...++  ++++++||++|.|+++++++|
T Consensus       331 Gv~~QT~E~I~~-~k----~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I  405 (742)
T CHL00189        331 GVKPQTIEAINY-IQ----AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETI  405 (742)
T ss_pred             CCChhhHHHHHH-HH----hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhh
Confidence            654444333221 11    23789999999999973211000001111   122333  789999999999999999999


Q ss_pred             HHHh
Q psy10504        263 VREM  266 (286)
Q Consensus       263 ~~~i  266 (286)
                      ....
T Consensus       406 ~~l~  409 (742)
T CHL00189        406 LLLA  409 (742)
T ss_pred             hhhh
Confidence            8764

>cd04171 SelB SelB subfamily

Probab=99.89  E-value=3.7e-22  Score=161.46  Aligned_cols=154  Identities=16%  Similarity=0.089  Sum_probs=102.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC---cCCCccCCC-ccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG---CFMEKYDPT-IEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~---~~~~~~~~t-~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .|+++|++|||||||+++|.+.   .+...+.++ +.+.....+.+.+ ...+++|||||+++|......+++.+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            5899999999999999999863   232222222 2233334444542 2358999999999988777778899999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHHh---cCCCEEEEeCCCCCcHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR-EVPTLDGQALAQS---WGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~---~~~~~~~vSa~~~~gv~~  257 (286)
                      |+|+++....+. ...+..+.. .  ...|+++|+||+|+.+... .....+.....+.   .+.+++++||++++|+++
T Consensus        81 V~d~~~~~~~~~-~~~~~~~~~-~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  156 (164)
T cd04171          81 VVAADEGIMPQT-REHLEILEL-L--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEE  156 (164)
T ss_pred             EEECCCCccHhH-HHHHHHHHH-h--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHH
Confidence            999987422221 222222222 1  1249999999999973211 1111222233333   357899999999999999


Q ss_pred             HHHHHHH
Q psy10504        258 MFAEIVR  264 (286)
Q Consensus       258 l~~~i~~  264 (286)
                      +++.+.+
T Consensus       157 l~~~l~~  163 (164)
T cd04171         157 LKEYLDE  163 (164)
T ss_pred             HHHHHhh
Confidence            9998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01878 HflX HflX subfamily

Probab=99.89  E-value=6.2e-22  Score=166.79  Aligned_cols=155  Identities=18%  Similarity=0.199  Sum_probs=111.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCC-CccCCCccceEEEEEEECCeEEEEEEEeCCCcccc---------hhhhhhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF---------ASMRDLY  172 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~---------~~~~~~~  172 (286)
                      ..++|+++|++|||||||++++.+..+. .....++.+.....+.+++. ..+.+|||||+.+.         .... ..
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~  117 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EE  117 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence            3479999999999999999999997642 22223333444444555554 14889999997321         1111 23


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504        173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK  252 (286)
Q Consensus       173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~  252 (286)
                      +..+|++++|+|++++.+.+....|...+... ...++|+++|+||+|+.+....      .......+.+++++||+++
T Consensus       118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~------~~~~~~~~~~~~~~Sa~~~  190 (204)
T cd01878         118 VAEADLLLHVVDASDPDYEEQIETVEKVLKEL-GAEDIPMILVLNKIDLLDDEEL------EERLEAGRPDAVFISAKTG  190 (204)
T ss_pred             HhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-CcCCCCEEEEEEccccCChHHH------HHHhhcCCCceEEEEcCCC
Confidence            56899999999999998888877777766653 2347899999999999632211      1334445678999999999


Q ss_pred             CcHHHHHHHHHHHh
Q psy10504        253 TNVNEMFAEIVREM  266 (286)
Q Consensus       253 ~gv~~l~~~i~~~i  266 (286)
                      .|+++++++|.+.+
T Consensus       191 ~gi~~l~~~L~~~~  204 (204)
T cd01878         191 EGLDELLEAIEELL  204 (204)
T ss_pred             CCHHHHHHHHHhhC
Confidence            99999999998754

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR00436 era GTP-binding protein Era

Probab=99.88  E-value=1.4e-21  Score=171.79  Aligned_cols=156  Identities=19%  Similarity=0.073  Sum_probs=112.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch-h-------hhhhcccC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA-S-------MRDLYIKN  175 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~-~-------~~~~~~~~  175 (286)
                      +|+++|++|||||||+|+|.+..+  ++..++|+.+........++.+  +.||||||..... .       ....++++
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~q--ii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQ--IIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcE--EEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            689999999999999999999765  3556667766555444445544  8899999975431 1       12456789


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCc
Q psy10504        176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTN  254 (286)
Q Consensus       176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~g  254 (286)
                      +|++++|+|+++..+.+  ..++..+..    .+.|+++|+||+|+.. ... .......+....+ .+++++||++|.|
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl~~-~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~g  151 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDNKF-KDK-LLPLIDKYAILEDFKDIVPISALTGDN  151 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeCCC-HHH-HHHHHHHHHhhcCCCceEEEecCCCCC
Confidence            99999999999876654  333444433    2789999999999862 211 1222333434344 3799999999999


Q ss_pred             HHHHHHHHHHHhhcCCC
Q psy10504        255 VNEMFAEIVREMNFNPE  271 (286)
Q Consensus       255 v~~l~~~i~~~i~~~~~  271 (286)
                      +++++++|.+.+++.+.
T Consensus       152 i~~L~~~l~~~l~~~~~  168 (270)
T TIGR00436       152 TSFLAAFIEVHLPEGPF  168 (270)
T ss_pred             HHHHHHHHHHhCCCCCC
Confidence            99999999999987664

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.88  E-value=4.3e-22  Score=157.97  Aligned_cols=134  Identities=20%  Similarity=0.336  Sum_probs=98.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcc-----cchhhhhhcccCccEEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE-----QFASMRDLYIKNGQGFV  180 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~-----~~~~~~~~~~~~~d~vi  180 (286)
                      ||+++|++|+|||||++++.+..+.  +.+|.      ...+..     .+|||||+.     .+..+.. .++++|+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~------~~~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQ------AVEYND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccce------eEEEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            8999999999999999999987652  22232      122222     579999973     3444433 589999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCCCcHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMF  259 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~l~  259 (286)
                      +|+|++++.++... .|....       ..|+++|+||+|+.+  +....++...+.+..+. +++++||++|.|++++|
T Consensus        68 lv~d~~~~~s~~~~-~~~~~~-------~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  137 (142)
T TIGR02528        68 LVQSATDPESRFPP-GFASIF-------VKPVIGLVTKIDLAE--ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV  137 (142)
T ss_pred             EEecCCCCCcCCCh-hHHHhc-------cCCeEEEEEeeccCC--cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence            99999999887652 332211       249999999999863  23344555666666665 89999999999999999


Q ss_pred             HHHH
Q psy10504        260 AEIV  263 (286)
Q Consensus       260 ~~i~  263 (286)
                      +++.
T Consensus       138 ~~l~  141 (142)
T TIGR02528       138 DYLN  141 (142)
T ss_pred             HHHh
Confidence            9874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.88  E-value=2.5e-21  Score=152.70  Aligned_cols=155  Identities=41%  Similarity=0.694  Sum_probs=122.4

Q ss_pred             EECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCC
Q psy10504        109 VLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTN  187 (286)
Q Consensus       109 ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~  187 (286)
                      ++|++|+|||||++++.+... .....++..+.........+....+.+||+||+..+...+..+++.+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999999877 4555555556666666666777789999999999888888889999999999999999


Q ss_pred             cccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        188 HHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       188 ~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      +.+.+....|...........++|+++++||+|+.....................+++++|++++.|+++++++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            9988888887444444445568999999999998733222111113445555678999999999999999999985

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.88  E-value=2.1e-21  Score=156.18  Aligned_cols=147  Identities=18%  Similarity=0.256  Sum_probs=109.6

Q ss_pred             EECCCCCcHHHHHHHHhcCcCC-CccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh------hhhhccc--CccEE
Q psy10504        109 VLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS------MRDLYIK--NGQGF  179 (286)
Q Consensus       109 ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~------~~~~~~~--~~d~v  179 (286)
                      ++|++|+|||||++++.+..+. ..+++++.+.....+.+++..  +.+|||||++.+..      ++..++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKE--IEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeE--EEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            5899999999999999987543 344445555556667777654  89999999987664      3555664  89999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      ++|+|++++...   ..+...+..    .++|+++|+||+|+.+.. ... ...+.+....+.+++++||+++.|+++++
T Consensus        79 i~v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~-~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~  149 (158)
T cd01879          79 VNVVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKR-GIK-IDLDKLSELLGVPVVPTSARKGEGIDELK  149 (158)
T ss_pred             EEEeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccc-cch-hhHHHHHHhhCCCeEEEEccCCCCHHHHH
Confidence            999999886432   233333333    278999999999997332 222 22456677778999999999999999999


Q ss_pred             HHHHHHh
Q psy10504        260 AEIVREM  266 (286)
Q Consensus       260 ~~i~~~i  266 (286)
                      +++.+.+
T Consensus       150 ~~l~~~~  156 (158)
T cd01879         150 DAIAELA  156 (158)
T ss_pred             HHHHHHh
Confidence            9998864

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG0075|consensus

Probab=99.88  E-value=1.9e-22  Score=155.04  Aligned_cols=157  Identities=20%  Similarity=0.314  Sum_probs=129.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      .+..+.++|..++|||||++....+.+..+-.||.+-.   ...+..+.+.+.+||.|||.+|+++|.+|++.++++++|
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn---mrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccce---eEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            45789999999999999999999998888888887632   333445555589999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--------CCEEEEeCCCCCc
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG--------CPFIEASAKNKTN  254 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~vSa~~~~g  254 (286)
                      +|+.|++..+..+.-+..+.......++|++|++||.|++++-..      ..+...+|        +.++.+|+++..|
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~------~~li~rmgL~sitdREvcC~siScke~~N  169 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK------IALIERMGLSSITDREVCCFSISCKEKVN  169 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccH------HHHHHHhCccccccceEEEEEEEEcCCcc
Confidence            999999988888887777777666679999999999999743222      22333333        4689999999999


Q ss_pred             HHHHHHHHHHHhhc
Q psy10504        255 VNEMFAEIVREMNF  268 (286)
Q Consensus       255 v~~l~~~i~~~i~~  268 (286)
                      ++.+.+||.+..+.
T Consensus       170 id~~~~Wli~hsk~  183 (186)
T KOG0075|consen  170 IDITLDWLIEHSKS  183 (186)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999997654

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.87  E-value=2.2e-21  Score=162.27  Aligned_cols=148  Identities=18%  Similarity=0.197  Sum_probs=99.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc--CcCCCccC------------CCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhh
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS--GCFMEKYD------------PTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMR  169 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~--~~~~~~~~------------~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~  169 (286)
                      -+|+++|++++|||||+++|+.  +.+...+.            .+.+ +.......+....+.+.+|||||+++|..++
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3799999999999999999997  55544321            0111 1112222333444568999999999999999


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-------hcCC
Q psy10504        170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-------SWGC  242 (286)
Q Consensus       170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~  242 (286)
                      ..+++.+|++++|+|+++.. ......++..+..    .++|+++|+||+|+..........+...+..       ..++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF  157 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence            99999999999999998853 2223333333322    3789999999999963222111223333321       2367


Q ss_pred             CEEEEeCCCCCcHHH
Q psy10504        243 PFIEASAKNKTNVNE  257 (286)
Q Consensus       243 ~~~~vSa~~~~gv~~  257 (286)
                      +++++||++|.|+++
T Consensus       158 ~iv~~Sa~~g~~~~~  172 (194)
T cd01891         158 PVLYASAKNGWASLN  172 (194)
T ss_pred             CEEEeehhccccccc
Confidence            899999999977633

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=7.5e-22  Score=181.42  Aligned_cols=162  Identities=21%  Similarity=0.277  Sum_probs=125.9

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEE-EEEEC-CeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRK-EIEVD-KAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~-~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      .+.+-|++|||.++|||||++++....+...+.+.+++++.. .+..+ +....++|+|||||+.|..|+.+..+-+|.+
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            366889999999999999999999999999999988877664 34443 1122389999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH---HHHHHhcC--CCEEEEeCCCCCc
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG---QALAQSWG--CPFIEASAKNKTN  254 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~--~~~~~vSa~~~~g  254 (286)
                      +||+|++|+-    ..+..+.+.+.+. .++|++|++||+|+++.++.....+.   ....+.++  +.++++||++|+|
T Consensus        83 ILVVa~dDGv----~pQTiEAI~hak~-a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G  157 (509)
T COG0532          83 ILVVAADDGV----MPQTIEAINHAKA-AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG  157 (509)
T ss_pred             EEEEEccCCc----chhHHHHHHHHHH-CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence            9999999987    4455556665543 38999999999999844432111111   11233444  6789999999999


Q ss_pred             HHHHHHHHHHHhhc
Q psy10504        255 VNEMFAEIVREMNF  268 (286)
Q Consensus       255 v~~l~~~i~~~i~~  268 (286)
                      +++|++.|+-....
T Consensus       158 i~eLL~~ill~aev  171 (509)
T COG0532         158 IDELLELILLLAEV  171 (509)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988876543

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.87  E-value=5.2e-21  Score=162.63  Aligned_cols=167  Identities=37%  Similarity=0.520  Sum_probs=129.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEE-EEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKE-IEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+||+++|++|+|||||+++|.++.+...+.+|++...... ....+..+.+.+|||+|+++|+.++..|+.+++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            448999999999999999999999999999998876444443 3444447779999999999999999999999999999


Q ss_pred             EEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC-----------CCCHHHHHHHHHhc---CCCEEE
Q psy10504        182 VYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR-----------EVPTLDGQALAQSW---GCPFIE  246 (286)
Q Consensus       182 v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~---~~~~~~  246 (286)
                      |+|.++.. +.+....|...+..... .+.|+++++||+|+.....           ..............   ...+++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE  162 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence            99999944 44555667777776432 4789999999999984431           22222222222222   344899


Q ss_pred             EeCC--CCCcHHHHHHHHHHHhhcCC
Q psy10504        247 ASAK--NKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       247 vSa~--~~~gv~~l~~~i~~~i~~~~  270 (286)
                      +|++  ++.++.++|..++..+.+..
T Consensus       163 ~s~~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         163 TSAKSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             eecccCCCcCHHHHHHHHHHHHHHhh
Confidence            9999  99999999999999886543

>KOG1145|consensus

Probab=99.87  E-value=1.1e-21  Score=179.32  Aligned_cols=163  Identities=20%  Similarity=0.214  Sum_probs=128.6

Q ss_pred             CCCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEE-EEEECCeEEEEEEEeCCCcccchhhhhhcccCc
Q psy10504         98 NSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRK-EIEVDKAPCVLEILDTAGTEQFASMRDLYIKNG  176 (286)
Q Consensus        98 ~~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~  176 (286)
                      ....++++-|.||||.++|||||+++|.+..+...+.+.+++++.. .+..+.+ -.++|.|||||..|.+|+.+....+
T Consensus       147 ~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vt  225 (683)
T KOG1145|consen  147 KLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVT  225 (683)
T ss_pred             hhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccc
Confidence            3455688999999999999999999999999999888888876654 3444433 3389999999999999999999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH---HHHHHhcC--CCEEEEeCCC
Q psy10504        177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG---QALAQSWG--CPFIEASAKN  251 (286)
Q Consensus       177 d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~--~~~~~vSa~~  251 (286)
                      |++++|++++|+.    +.+..+.|.+.+. .++|+||++||+|.++.+.+-...+.   ....+.+|  ++++++||++
T Consensus       226 DIvVLVVAadDGV----mpQT~EaIkhAk~-A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~  300 (683)
T KOG1145|consen  226 DIVVLVVAADDGV----MPQTLEAIKHAKS-ANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALT  300 (683)
T ss_pred             cEEEEEEEccCCc----cHhHHHHHHHHHh-cCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence            9999999999987    5666677777654 48999999999998844432111111   11233444  7899999999


Q ss_pred             CCcHHHHHHHHHHHh
Q psy10504        252 KTNVNEMFAEIVREM  266 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i  266 (286)
                      |+|++.|-+.++-.+
T Consensus       301 g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  301 GENLDLLEEAILLLA  315 (683)
T ss_pred             CCChHHHHHHHHHHH
Confidence            999999999887654

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.87  E-value=5.8e-21  Score=153.03  Aligned_cols=145  Identities=24%  Similarity=0.327  Sum_probs=110.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh--------hhhccc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM--------RDLYIK  174 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~--------~~~~~~  174 (286)
                      ++|+++|++|+|||||++++.+...  ....++++.+.....+..++..  +.+|||||+.++...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIP--VRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEE--EEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            6899999999999999999998754  3445555556555666666544  889999998765431        234667


Q ss_pred             CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy10504        175 NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTN  254 (286)
Q Consensus       175 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g  254 (286)
                      .+|++++|+|++++.+..+...+..       ..+.|+++|+||+|+.+....        .....+.+++++||+++.|
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~~~Sa~~~~~  144 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL--------LSLLAGKPIIAISAKTGEG  144 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc--------ccccCCCceEEEECCCCCC
Confidence            8999999999999877766554332       247899999999999733222        3344567899999999999


Q ss_pred             HHHHHHHHHHHh
Q psy10504        255 VNEMFAEIVREM  266 (286)
Q Consensus       255 v~~l~~~i~~~i  266 (286)
                      +++++++|.+.+
T Consensus       145 v~~l~~~l~~~~  156 (157)
T cd04164         145 LDELKEALLELA  156 (157)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01894 EngA1 EngA1 subfamily

Probab=99.87  E-value=3.1e-21  Score=154.77  Aligned_cols=146  Identities=23%  Similarity=0.284  Sum_probs=106.1

Q ss_pred             EEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh--------hhhhcccCcc
Q psy10504        108 VVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS--------MRDLYIKNGQ  177 (286)
Q Consensus       108 ~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~--------~~~~~~~~~d  177 (286)
                      +++|++|+|||||++++.+..  +....++++.+........++..  +.+|||||+..+..        .....++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGRE--FILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeE--EEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            489999999999999999864  34455566655556666666654  88999999987554        3345678899


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCCCcHH
Q psy10504        178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVN  256 (286)
Q Consensus       178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~  256 (286)
                      ++++|+|++++.+..+. .....+..    .+.|+++|+||+|+.+....      .......+. +++++||+++.|++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~----~~~piiiv~nK~D~~~~~~~------~~~~~~~~~~~~~~~Sa~~~~gv~  147 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK----SKKPVILVVNKVDNIKEEDE------AAEFYSLGFGEPIPISAEHGRGIG  147 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh----cCCCEEEEEECcccCChHHH------HHHHHhcCCCCeEEEecccCCCHH
Confidence            99999999886554443 22222322    26899999999999732211      222334554 78999999999999


Q ss_pred             HHHHHHHHHh
Q psy10504        257 EMFAEIVREM  266 (286)
Q Consensus       257 ~l~~~i~~~i  266 (286)
                      ++++++++.+
T Consensus       148 ~l~~~l~~~~  157 (157)
T cd01894         148 DLLDAILELL  157 (157)
T ss_pred             HHHHHHHhhC
Confidence            9999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.87  E-value=1.1e-21  Score=157.04  Aligned_cols=147  Identities=21%  Similarity=0.343  Sum_probs=108.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh------hhhhcc--cC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS------MRDLYI--KN  175 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~------~~~~~~--~~  175 (286)
                      ++|+++|.||+|||||+|+|.+... ..++++++.+.....+.+++..  +.++|+||......      ....++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~--~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQ--VELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEE--EEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCce--EEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999654 5678888888888889998877  88999999543322      333443  67


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcH
Q psy10504        176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV  255 (286)
Q Consensus       176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv  255 (286)
                      .|++++|+|+++.+   .-......+...    ++|+++|+||+|+.....  .....+.+.+.+++|++++||++++|+
T Consensus        79 ~D~ii~VvDa~~l~---r~l~l~~ql~e~----g~P~vvvlN~~D~a~~~g--~~id~~~Ls~~Lg~pvi~~sa~~~~g~  149 (156)
T PF02421_consen   79 PDLIIVVVDATNLE---RNLYLTLQLLEL----GIPVVVVLNKMDEAERKG--IEIDAEKLSERLGVPVIPVSARTGEGI  149 (156)
T ss_dssp             SSEEEEEEEGGGHH---HHHHHHHHHHHT----TSSEEEEEETHHHHHHTT--EEE-HHHHHHHHTS-EEEEBTTTTBTH
T ss_pred             CCEEEEECCCCCHH---HHHHHHHHHHHc----CCCEEEEEeCHHHHHHcC--CEECHHHHHHHhCCCEEEEEeCCCcCH
Confidence            99999999998743   222333344432    799999999999863222  223467888889999999999999999


Q ss_pred             HHHHHHH
Q psy10504        256 NEMFAEI  262 (286)
Q Consensus       256 ~~l~~~i  262 (286)
                      +++++.|
T Consensus       150 ~~L~~~I  156 (156)
T PF02421_consen  150 DELKDAI  156 (156)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhC
Confidence            9999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK04213 GTP-binding protein; Provisional

Probab=99.87  E-value=1.3e-21  Score=164.40  Aligned_cols=155  Identities=18%  Similarity=0.191  Sum_probs=104.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCC-----------cccchhhhhh
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG-----------TEQFASMRDL  171 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG-----------~~~~~~~~~~  171 (286)
                      ..++|+++|.+|+|||||++++.+..+...+.++++ .....+...    .+.+|||||           ++.++.++..
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t-~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT-RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVR   82 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee-eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence            568999999999999999999998776554444432 122233332    388999999           4566666655


Q ss_pred             ccc----CccEEEEEEECCCcccHH----------HHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy10504        172 YIK----NGQGFVVVYSLTNHHTFQ----------DIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA  237 (286)
Q Consensus       172 ~~~----~~d~vilv~d~~~~~s~~----------~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~  237 (286)
                      ++.    .++++++|+|.++.....          .-..++..+.    ..++|+++|+||+|+.+..    ......+.
T Consensus        83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~p~iiv~NK~Dl~~~~----~~~~~~~~  154 (201)
T PRK04213         83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR----ELGIPPIVAVNKMDKIKNR----DEVLDEIA  154 (201)
T ss_pred             HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH----HcCCCeEEEEECccccCcH----HHHHHHHH
Confidence            553    457888888886532210          0011122222    2378999999999986322    23444555


Q ss_pred             HhcCC---------CEEEEeCCCCCcHHHHHHHHHHHhhcCCC
Q psy10504        238 QSWGC---------PFIEASAKNKTNVNEMFAEIVREMNFNPE  271 (286)
Q Consensus       238 ~~~~~---------~~~~vSa~~~~gv~~l~~~i~~~i~~~~~  271 (286)
                      +..+.         +++++||++| |+++++++|.+.+.+...
T Consensus       155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~  196 (201)
T PRK04213        155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR  196 (201)
T ss_pred             HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence            55554         5899999999 999999999998765443

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.87  E-value=1.8e-21  Score=159.38  Aligned_cols=154  Identities=20%  Similarity=0.231  Sum_probs=110.2

Q ss_pred             EECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEEC-CeEEEEEEEeCCCccc----chhhh---hhcccCccEE
Q psy10504        109 VLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVD-KAPCVLEILDTAGTEQ----FASMR---DLYIKNGQGF  179 (286)
Q Consensus       109 ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~l~l~DtpG~~~----~~~~~---~~~~~~~d~v  179 (286)
                      ++|++|||||||++++.+... ...+++++.+.....+.++ +..  +.+|||||+.+    ...++   ..+++.+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGAR--IQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCe--EEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            589999999999999999764 3445555555545555565 555  88999999743    12222   3356789999


Q ss_pred             EEEEECCCc------ccHHHHHHHHHHHHHHhC------CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEE
Q psy10504        180 VVVYSLTNH------HTFQDIKQMKELITRVKG------SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEA  247 (286)
Q Consensus       180 ilv~d~~~~------~s~~~~~~~~~~i~~~~~------~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v  247 (286)
                      ++|+|++++      .++++...|...+.....      ..++|+++|+||+|+.. ................+.+++++
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~  157 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD-AEELEEELVRELALEEGAEVVPI  157 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc-hhHHHHHHHHHHhcCCCCCEEEE
Confidence            999999998      567777777777765332      14789999999999973 22222211223344456789999


Q ss_pred             eCCCCCcHHHHHHHHHHH
Q psy10504        248 SAKNKTNVNEMFAEIVRE  265 (286)
Q Consensus       248 Sa~~~~gv~~l~~~i~~~  265 (286)
                      ||+++.|++++++++++.
T Consensus       158 Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         158 SAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             ehhhhcCHHHHHHHHHhh
Confidence            999999999999999764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.87  E-value=5.2e-21  Score=184.10  Aligned_cols=165  Identities=19%  Similarity=0.249  Sum_probs=121.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCc-------CCCccCCCc------c-ceE--EEEEEE---CCeEEEEEEEeCCCcccc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGC-------FMEKYDPTI------E-DFY--RKEIEV---DKAPCVLEILDTAGTEQF  165 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~-------~~~~~~~t~------~-~~~--~~~~~~---~~~~~~l~l~DtpG~~~~  165 (286)
                      -+++++|++++|||||+++|+...       +...+..+.      + +..  ...+.+   ++..+.++|||||||.+|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            479999999999999999998742       111121111      1 111  122223   456678999999999999


Q ss_pred             hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC---
Q psy10504        166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC---  242 (286)
Q Consensus       166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---  242 (286)
                      ...+..+++.+|++++|+|++++.+.++...|...+..     ++|+++|+||+|+....   .......+.+.++.   
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~-----~ipiIiViNKiDl~~~~---~~~~~~el~~~lg~~~~  155 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALEN-----DLEIIPVINKIDLPSAD---PERVKKEIEEVIGLDAS  155 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHc-----CCCEEEEEECcCCCccC---HHHHHHHHHHHhCCCcc
Confidence            99999999999999999999998888877776654432     78999999999986321   12223445555564   


Q ss_pred             CEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCc
Q psy10504        243 PFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASF  277 (286)
Q Consensus       243 ~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~  277 (286)
                      .++++||++|.|++++|++|.+.++......+.++
T Consensus       156 ~vi~vSAktG~GI~~Lle~I~~~lp~p~~~~~~pl  190 (595)
T TIGR01393       156 EAILASAKTGIGIEEILEAIVKRVPPPKGDPDAPL  190 (595)
T ss_pred             eEEEeeccCCCCHHHHHHHHHHhCCCCCCCCCCCe
Confidence            48999999999999999999999877655444444

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=2.6e-21  Score=182.52  Aligned_cols=159  Identities=23%  Similarity=0.259  Sum_probs=117.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc----------cchhhh-
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE----------QFASMR-  169 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~----------~~~~~~-  169 (286)
                      ..++|+++|++|||||||+++|++...  ....++++.+.....+..++..  +.+|||||..          .|..++ 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence            468999999999999999999998754  5666777778877888888877  6789999953          333333 


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCHHHH-HHHHHhcCCCEEEE
Q psy10504        170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPTLDG-QALAQSWGCPFIEA  247 (286)
Q Consensus       170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~-~~~~~~~~~~~~~v  247 (286)
                      ..+++.+|++++|+|++++.+.++... +..+..    .++|+++|+||+|+.+.... ....+. ..+.....++++++
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~~-~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~  362 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQRV-LSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI  362 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHHH-HHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence            235789999999999999988887753 333332    37899999999999732211 001111 11222234789999


Q ss_pred             eCCCCCcHHHHHHHHHHHhhc
Q psy10504        248 SAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       248 Sa~~~~gv~~l~~~i~~~i~~  268 (286)
                      ||++|.|++++|+.+.+.+..
T Consensus       363 SAk~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        363 SAKTGRAVDKLVPALETALES  383 (472)
T ss_pred             ECCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999887643

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.86  E-value=8.7e-21  Score=170.56  Aligned_cols=159  Identities=18%  Similarity=0.213  Sum_probs=119.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccc----hhhhhhc---ccCc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF----ASMRDLY---IKNG  176 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~----~~~~~~~---~~~~  176 (286)
                      ..|+++|.+|||||||++++..... +..++.|+.......+.+++ ...+++||+||..+.    ..+...+   +..+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            5789999999999999999998643 55666777666666666665 133899999997532    1233333   4569


Q ss_pred             cEEEEEEECCCc---ccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504        177 QGFVVVYSLTNH---HTFQDIKQMKELITRVK-GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK  252 (286)
Q Consensus       177 d~vilv~d~~~~---~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~  252 (286)
                      +++++|+|+++.   ..++++..|...+..+. ...++|+++|+||+|+.+. .. .....+.+.+..+.+++++||+++
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~-~~-~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE-EE-LAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh-HH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence            999999999986   67788888877776643 2247899999999999732 22 233445556666789999999999


Q ss_pred             CcHHHHHHHHHHHh
Q psy10504        253 TNVNEMFAEIVREM  266 (286)
Q Consensus       253 ~gv~~l~~~i~~~i  266 (286)
                      +|+++++++|.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.86  E-value=7e-21  Score=177.32  Aligned_cols=151  Identities=23%  Similarity=0.295  Sum_probs=120.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh--------hhhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM--------RDLY  172 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~--------~~~~  172 (286)
                      ..++|+++|++|+|||||+|+|++..  ++..+++|+.+.....+.+++..  +.+|||||+.++...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            56899999999999999999999864  56778888888888888888877  789999998765432        2457


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504        173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK  252 (286)
Q Consensus       173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~  252 (286)
                      ++.+|++++|+|++++.+.+..  |+..+..    .++|+++|+||+|+...       +...+.+..+.+++++||++ 
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-------~~~~~~~~~~~~~~~vSak~-  345 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-------SLEFFVSSKVLNSSNLSAKQ-  345 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-------chhhhhhhcCCceEEEEEec-
Confidence            8899999999999998877765  5544432    37899999999999622       12344566778899999998 


Q ss_pred             CcHHHHHHHHHHHhhcC
Q psy10504        253 TNVNEMFAEIVREMNFN  269 (286)
Q Consensus       253 ~gv~~l~~~i~~~i~~~  269 (286)
                      .|++++|+.+.+.+.+.
T Consensus       346 ~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       346 LKIKALVDLLTQKINAF  362 (442)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            69999999998887653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK15494 era GTPase Era; Provisional

Probab=99.86  E-value=1.4e-20  Score=170.23  Aligned_cols=160  Identities=16%  Similarity=0.204  Sum_probs=114.4

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCC--CccCCCccceEEEEEEECCeEEEEEEEeCCCccc-chhhh-------hh
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFM--EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ-FASMR-------DL  171 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~-~~~~~-------~~  171 (286)
                      .+..+|+++|++|||||||+|+|.+..+.  .....|+.+.....+..++.+  +.||||||+.+ +..+.       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~q--i~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQ--VILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeE--EEEEECCCcCCCcccHHHHHHHHHHH
Confidence            46689999999999999999999987763  234455556666667777766  78999999853 22221       23


Q ss_pred             cccCccEEEEEEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--CCEEEEe
Q psy10504        172 YIKNGQGFVVVYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG--CPFIEAS  248 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~vS  248 (286)
                      .+.++|++++|+|+.+.  +.... .|+..+..    .+.|.++|+||+|+.+ .   ...+........+  ..++++|
T Consensus       128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~----~~~p~IlViNKiDl~~-~---~~~~~~~~l~~~~~~~~i~~iS  197 (339)
T PRK15494        128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRS----LNIVPIFLLNKIDIES-K---YLNDIKAFLTENHPDSLLFPIS  197 (339)
T ss_pred             HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHh----cCCCEEEEEEhhcCcc-c---cHHHHHHHHHhcCCCcEEEEEe
Confidence            47899999999998663  33333 34444433    2567889999999862 2   1333444444333  6799999


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCCCCc
Q psy10504        249 AKNKTNVNEMFAEIVREMNFNPEKD  273 (286)
Q Consensus       249 a~~~~gv~~l~~~i~~~i~~~~~~~  273 (286)
                      |++|.|+++++++|.+.+++.+...
T Consensus       198 Aktg~gv~eL~~~L~~~l~~~~~~~  222 (339)
T PRK15494        198 ALSGKNIDGLLEYITSKAKISPWLY  222 (339)
T ss_pred             ccCccCHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999998866443

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.86  E-value=7.8e-21  Score=157.20  Aligned_cols=155  Identities=21%  Similarity=0.195  Sum_probs=109.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCc-----------------cceEEEEEEECCeEEEEEEEeCCCcccchhh
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-----------------EDFYRKEIEVDKAPCVLEILDTAGTEQFASM  168 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~-----------------~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~  168 (286)
                      +|+++|.+|+|||||++++.+.........+.                 .+.....+...+  ..+.+|||||+.++...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD--RRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC--EEEEEEeCCCcHHHHHH
Confidence            48999999999999999999876654332211                 122222333343  44899999999999988


Q ss_pred             hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHHh--------
Q psy10504        169 RDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR-EVPTLDGQALAQS--------  239 (286)
Q Consensus       169 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~--------  239 (286)
                      +..+++.+|++++|+|++++...... .++..+..    .+.|+++|+||+|+..... ...........+.        
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKE  153 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhh
Confidence            99999999999999999987654433 23333332    4789999999999973111 1111222222222        


Q ss_pred             ------cCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        240 ------WGCPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       240 ------~~~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                            ...+++++||++|.|++++++++.+.++
T Consensus       154 ~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         154 EGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             hhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                  3478999999999999999999999875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.86  E-value=6.2e-21  Score=178.48  Aligned_cols=148  Identities=26%  Similarity=0.332  Sum_probs=118.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh--------hhhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM--------RDLY  172 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~--------~~~~  172 (286)
                      ..++|+++|.+|+|||||+|+|.+..  ++...++++.+.....+.+++..  +.+|||||++++...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIP--LRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeE--EEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            45899999999999999999999865  36677788888888888888766  889999998765432        2346


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504        173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK  252 (286)
Q Consensus       173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~  252 (286)
                      ++.+|++++|+|++++.+.++...|..       ..++|+++|+||+|+.+... ..        ...+.+++++||++|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~-~~--------~~~~~~~i~iSAktg  355 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEID-LE--------EENGKPVIRISAKTG  355 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccch-hh--------hccCCceEEEEeeCC
Confidence            789999999999999887775544332       34789999999999973211 11        344578999999999


Q ss_pred             CcHHHHHHHHHHHhhc
Q psy10504        253 TNVNEMFAEIVREMNF  268 (286)
Q Consensus       253 ~gv~~l~~~i~~~i~~  268 (286)
                      .|+++++++|.+.+..
T Consensus       356 ~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        356 EGIDELREAIKELAFG  371 (449)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999998865

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.86  E-value=2.2e-20  Score=174.61  Aligned_cols=159  Identities=21%  Similarity=0.218  Sum_probs=116.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhh----------
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMR----------  169 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~----------  169 (286)
                      ...++|+++|++|+|||||+++|++..  .....++|+.+.....+..++..  +.+|||||+.++....          
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKK--YLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcE--EEEEECCCccccccchhhHHHHHHHH
Confidence            356899999999999999999999864  35666777777777777777765  8899999976544321          


Q ss_pred             -hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh----cCCCE
Q psy10504        170 -DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS----WGCPF  244 (286)
Q Consensus       170 -~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~  244 (286)
                       ..+++.+|++++|+|++++.+.++...+ ..+..    .++|+++|+||+|+.+ ...........+...    .++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~~~-~~~~~----~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~v  321 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLRIA-GLILE----AGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPI  321 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHHHH-HHHHH----cCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCce
Confidence             2467899999999999998877765432 22222    2789999999999972 111111111122222    24789


Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        245 IEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       245 ~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      +++||++|.|++++|+++.+....
T Consensus       322 i~~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       322 VFISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999886653

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.86  E-value=1.7e-20  Score=170.14  Aligned_cols=152  Identities=18%  Similarity=0.210  Sum_probs=113.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc---------cchhhhhhcc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE---------QFASMRDLYI  173 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~---------~~~~~~~~~~  173 (286)
                      .++|+++|.+|+|||||+|+|.+... ..+..+++.++....+.+++.. .+.+|||||..         .|...+ ..+
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~-~i~l~DT~G~~~~l~~~lie~f~~tl-e~~  266 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGG-EVLLTDTVGFIRDLPHELVAAFRATL-EEV  266 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCc-eEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence            48999999999999999999999754 3455667777778888884322 48899999972         222222 247


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCC
Q psy10504        174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT  253 (286)
Q Consensus       174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~  253 (286)
                      .++|++++|+|++++.+.+....|...+... ...++|+++|+||+|+.+. ..     ..... ....+++++||++|.
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~~~~piIlV~NK~Dl~~~-~~-----v~~~~-~~~~~~i~iSAktg~  338 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIEAVEKVLEEL-GAEDIPQLLVYNKIDLLDE-PR-----IERLE-EGYPEAVFVSAKTGE  338 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHHHHHHHHHHh-ccCCCCEEEEEEeecCCCh-Hh-----HHHHH-hCCCCEEEEEccCCC
Confidence            8899999999999998888777666655553 2347899999999999621 11     11111 123568999999999


Q ss_pred             cHHHHHHHHHHH
Q psy10504        254 NVNEMFAEIVRE  265 (286)
Q Consensus       254 gv~~l~~~i~~~  265 (286)
                      |+++++++|.+.
T Consensus       339 GI~eL~~~I~~~  350 (351)
T TIGR03156       339 GLDLLLEAIAER  350 (351)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01889 SelB_euk SelB subfamily

Probab=99.86  E-value=5.5e-21  Score=159.66  Aligned_cols=159  Identities=18%  Similarity=0.131  Sum_probs=103.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC----cCCC----ccCCCccceEEEEEEEC------------CeEEEEEEEeCCCccc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG----CFME----KYDPTIEDFYRKEIEVD------------KAPCVLEILDTAGTEQ  164 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~----~~~~----~~~~t~~~~~~~~~~~~------------~~~~~l~l~DtpG~~~  164 (286)
                      ++|+++|++|+|||||+++|+..    .+..    ...+++.+.....+.+.            +..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            47999999999999999999872    1211    12222222222233332            3345689999999976


Q ss_pred             chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC-CCCHHHHHH-HHH----
Q psy10504        165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR-EVPTLDGQA-LAQ----  238 (286)
Q Consensus       165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~-~~~----  238 (286)
                      +..........+|++++|+|++++...+....+..  ...   .++|+++++||+|+..... .....+... +..    
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~--~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~  155 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI--GEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK  155 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH--HHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            54444445677899999999998655444333321  111   2679999999999862221 111111111 111    


Q ss_pred             --hcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        239 --SWGCPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       239 --~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                        ..+++++++||++|.|++++++++.+.++.
T Consensus       156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             cCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence              135789999999999999999999998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>KOG0071|consensus

Probab=99.86  E-value=5.7e-21  Score=145.78  Aligned_cols=162  Identities=17%  Similarity=0.286  Sum_probs=128.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      ++++|+.+|..++||||++..|+.+..... .||+ .+...++.+.+..  |.+||.+|+++.+.+|++|+..+.++|||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~-ipTv-GFnvetVtykN~k--fNvwdvGGqd~iRplWrhYy~gtqglIFV   91 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTV-GFNVETVTYKNVK--FNVWDVGGQDKIRPLWRHYYTGTQGLIFV   91 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCccc-cccc-ceeEEEEEeeeeE--EeeeeccCchhhhHHHHhhccCCceEEEE
Confidence            578999999999999999999998755443 3344 3445566666666  89999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH--hcCCCEEEEeCCCCCcHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ--SWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|+.+...+++.+.-+..+...+...+.|++|.+||.|++++.......+..++..  ....-+.+++|.+|+|+.+-|.
T Consensus        92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~egls  171 (180)
T KOG0071|consen   92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLS  171 (180)
T ss_pred             EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHH
Confidence            99999999999998888887767667899999999999985433222222222222  1225578999999999999999


Q ss_pred             HHHHHhhc
Q psy10504        261 EIVREMNF  268 (286)
Q Consensus       261 ~i~~~i~~  268 (286)
                      |+...+++
T Consensus       172 wlsnn~~~  179 (180)
T KOG0071|consen  172 WLSNNLKE  179 (180)
T ss_pred             HHHhhccC
Confidence            99987754

>cd01895 EngA2 EngA2 subfamily

Probab=99.85  E-value=3.6e-20  Score=150.65  Aligned_cols=155  Identities=22%  Similarity=0.278  Sum_probs=107.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh----------h-hh
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS----------M-RD  170 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~----------~-~~  170 (286)
                      .++|+++|++|+|||||++++.+...  ....++++.+.....+..++..  +.+|||||+.+...          . ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHH
Confidence            47899999999999999999998653  3344455555555566666666  78999999754311          1 12


Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc----CCCEEE
Q psy10504        171 LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW----GCPFIE  246 (286)
Q Consensus       171 ~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~  246 (286)
                      ..+..+|++++|+|++++.+..... ++..+..    .+.|+++++||+|+.+............+.+..    ..++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF  154 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence            3567899999999999987765543 2222222    268999999999997332111111122333333    368999


Q ss_pred             EeCCCCCcHHHHHHHHHHH
Q psy10504        247 ASAKNKTNVNEMFAEIVRE  265 (286)
Q Consensus       247 vSa~~~~gv~~l~~~i~~~  265 (286)
                      +||+++.|++++++++.+.
T Consensus       155 ~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         155 ISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EeccCCCCHHHHHHHHHHh
Confidence            9999999999999998763

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=2.3e-20  Score=176.12  Aligned_cols=155  Identities=20%  Similarity=0.233  Sum_probs=113.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCccc--------chhhhhhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ--------FASMRDLY  172 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~--------~~~~~~~~  172 (286)
                      ..++|+|+|.+|||||||+|+|.+...  ....++++.+.......+++..  +.+|||||++.        +......+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRR--FTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcE--EEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            347999999999999999999998653  3445555556666777777776  88999999763        33345667


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504        173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK  252 (286)
Q Consensus       173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~  252 (286)
                      ++.+|++++|+|++++.+... ..+...+..    .++|+++|+||+|+....    ....+......+ ..+++||++|
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~~----~~~~~~~~~g~~-~~~~iSA~~g  184 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDDERGE----ADAAALWSLGLG-EPHPVSALHG  184 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCccc----hhhHHHHhcCCC-CeEEEEcCCC
Confidence            899999999999999766543 233333333    378999999999986221    111122222233 3579999999


Q ss_pred             CcHHHHHHHHHHHhhcC
Q psy10504        253 TNVNEMFAEIVREMNFN  269 (286)
Q Consensus       253 ~gv~~l~~~i~~~i~~~  269 (286)
                      .|++++|++|++.+++.
T Consensus       185 ~gi~eL~~~i~~~l~~~  201 (472)
T PRK03003        185 RGVGDLLDAVLAALPEV  201 (472)
T ss_pred             CCcHHHHHHHHhhcccc
Confidence            99999999999998663

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.85  E-value=2.7e-20  Score=155.06  Aligned_cols=160  Identities=18%  Similarity=0.213  Sum_probs=108.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCc-------------------cCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEK-------------------YDPTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      +..+|+++|+.++|||||+.+|........                   ....+.+.....+........++++|||||.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            457899999999999999999986332110                   0111123333444412333449999999999


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHH-HHHHhc--
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQ-ALAQSW--  240 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~~~~~--  240 (286)
                      +|.......++.+|++|+|+|+.++...+.... +..+..    .++|+++|+||+|+..........+.. .+.+..  
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~-l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~  156 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEEH-LKILRE----LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGE  156 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHH-HHHHHH----TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ceeecccceecccccceeeeecccccccccccc-cccccc----cccceEEeeeeccchhhhHHHHHHHHHHHhcccccc
Confidence            999988889999999999999998765544333 333333    278999999999997111111111111 232333  


Q ss_pred             ----CCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        241 ----GCPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       241 ----~~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                          .++++++||++|.|+++|++.|.+.++
T Consensus       157 ~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  157 NGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             CccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence                257999999999999999999999876

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>KOG0076|consensus

Probab=99.85  E-value=2.7e-21  Score=152.79  Aligned_cols=164  Identities=26%  Similarity=0.347  Sum_probs=127.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCc-------CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGC-------FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKN  175 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~  175 (286)
                      ..+.|+|+|..++|||||+.++....       .+....+|.+ ....++.+.+..  +.|||.+||+..+++|..||..
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg-Lnig~i~v~~~~--l~fwdlgGQe~lrSlw~~yY~~   92 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG-LNIGTIEVCNAP--LSFWDLGGQESLRSLWKKYYWL   92 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc-eeecceeeccce--eEEEEcCChHHHHHHHHHHHHH
Confidence            45789999999999999998886521       1223344443 223445555555  8899999999999999999999


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC---CCEEEEeCCCC
Q psy10504        176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG---CPFIEASAKNK  252 (286)
Q Consensus       176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~vSa~~~  252 (286)
                      +|++++++|+++++.++.....+..+......+++|+++.+||.|+.+.............++..+   .++.+|||.+|
T Consensus        93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~g  172 (197)
T KOG0076|consen   93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTG  172 (197)
T ss_pred             hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence            999999999999999999998888887777778999999999999973322211111112223333   78999999999


Q ss_pred             CcHHHHHHHHHHHhhcC
Q psy10504        253 TNVNEMFAEIVREMNFN  269 (286)
Q Consensus       253 ~gv~~l~~~i~~~i~~~  269 (286)
                      +|+++..+|+...++.+
T Consensus       173 egv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  173 EGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             ccHHHHHHHHHHHHhhc
Confidence            99999999999999887

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.84  E-value=2.8e-20  Score=150.67  Aligned_cols=144  Identities=13%  Similarity=0.130  Sum_probs=99.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch----hhhhhcccCccEEEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA----SMRDLYIKNGQGFVV  181 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~----~~~~~~~~~~d~vil  181 (286)
                      +|+++|++|+|||||++++.+.....  .      ....+.+...    .+|||||.....    ......++.+|++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~------~~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA--R------KTQAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC--c------cceEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            79999999999999999987643211  1      1112223222    269999973222    111234789999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--CCEEEEeCCCCCcHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG--CPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~gv~~l~  259 (286)
                      |+|++++.++..  .|+..+     ..++|+++++||+|+.+    ........+.+..+  .|++++||++|+|++++|
T Consensus        71 v~d~~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~----~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~  139 (158)
T PRK15467         71 VHGANDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPD----ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV  139 (158)
T ss_pred             EEeCCCcccccC--HHHHhc-----cCCCCeEEEEEccccCc----ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence            999998876532  233322     23679999999999862    22344556666666  499999999999999999


Q ss_pred             HHHHHHhhcCCCC
Q psy10504        260 AEIVREMNFNPEK  272 (286)
Q Consensus       260 ~~i~~~i~~~~~~  272 (286)
                      +.+.+.+.+....
T Consensus       140 ~~l~~~~~~~~~~  152 (158)
T PRK15467        140 DYLASLTKQEEAG  152 (158)
T ss_pred             HHHHHhchhhhcc
Confidence            9999988654433

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.84  E-value=1.1e-19  Score=167.56  Aligned_cols=159  Identities=19%  Similarity=0.233  Sum_probs=119.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEEC-CeEEEEEEEeCCCccc----chhhhhhc---ccCc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVD-KAPCVLEILDTAGTEQ----FASMRDLY---IKNG  176 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~l~l~DtpG~~~----~~~~~~~~---~~~~  176 (286)
                      .|+++|.||||||||++++++... ...++.|+.......+.++ +..  +.+||+||..+    ...+...+   +..+
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~--~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRS--FVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCce--EEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            799999999999999999998653 3566777666655556555 444  88999999643    22233334   4569


Q ss_pred             cEEEEEEECCCc---ccHHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504        177 QGFVVVYSLTNH---HTFQDIKQMKELITRVKG-SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK  252 (286)
Q Consensus       177 d~vilv~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~  252 (286)
                      +++++|+|+++.   ..+++...|...+..+.. ..++|++||+||+|+..     .....+.+.+..+.+++++||+++
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-----~~e~l~~l~~~l~~~i~~iSA~tg  312 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-----AEENLEEFKEKLGPKVFPISALTG  312 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-----CHHHHHHHHHHhCCcEEEEeCCCC
Confidence            999999999865   567777778777776532 24789999999999852     123445566666788999999999


Q ss_pred             CcHHHHHHHHHHHhhcCCC
Q psy10504        253 TNVNEMFAEIVREMNFNPE  271 (286)
Q Consensus       253 ~gv~~l~~~i~~~i~~~~~  271 (286)
                      +|+++++++|.+.+.+.+.
T Consensus       313 eGI~eL~~~L~~~l~~~~~  331 (424)
T PRK12297        313 QGLDELLYAVAELLEETPE  331 (424)
T ss_pred             CCHHHHHHHHHHHHHhCcc
Confidence            9999999999998866543

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.84  E-value=3.1e-20  Score=156.55  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=79.9

Q ss_pred             EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCH
Q psy10504        152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPT  230 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~  230 (286)
                      ..+.||||||+++|...+...+..+|++++|+|++++.........+..+...   ...|+++|+||+|+.+.... ...
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~~~  159 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALENY  159 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHHHH
Confidence            45899999999999888888888999999999999742111111222222221   13479999999999632111 111


Q ss_pred             HHHHHHHHh---cCCCEEEEeCCCCCcHHHHHHHHHHHhhcCC
Q psy10504        231 LDGQALAQS---WGCPFIEASAKNKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       231 ~~~~~~~~~---~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~  270 (286)
                      .......+.   .+.+++++||++|+|+++++++|.+.+++.+
T Consensus       160 ~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~  202 (203)
T cd01888         160 EQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP  202 (203)
T ss_pred             HHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence            222222332   2578999999999999999999999887754

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.84  E-value=3.7e-20  Score=177.21  Aligned_cols=159  Identities=20%  Similarity=0.239  Sum_probs=107.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEE-EEEEC----------------CeEEEEEEEeCCCcccc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRK-EIEVD----------------KAPCVLEILDTAGTEQF  165 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~-~~~~~----------------~~~~~l~l~DtpG~~~~  165 (286)
                      +.+-|+++|+++||||||+++|.+..+....+++++..... .+..+                .....+.|||||||+.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            56789999999999999999999988766655543321111 11111                00113889999999999


Q ss_pred             hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC---CC--------HHHH-
Q psy10504        166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE---VP--------TLDG-  233 (286)
Q Consensus       166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~---~~--------~~~~-  233 (286)
                      ..++..+++.+|++++|+|++++...++...+ ..+..    .++|+++++||+|+.+....   ..        .... 
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~~l~~----~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~  157 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL-NILRM----YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ  157 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-HHHHH----cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence            99999999999999999999985433332221 12222    27899999999999632110   00        0000 


Q ss_pred             -----------HHHHH------------hc--CCCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504        234 -----------QALAQ------------SW--GCPFIEASAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       234 -----------~~~~~------------~~--~~~~~~vSa~~~~gv~~l~~~i~~~i  266 (286)
                                 ..+.+            .+  .++++++||++|+|+++++++|....
T Consensus       158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                       01111            12  26899999999999999999987543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.84  E-value=1e-19  Score=175.28  Aligned_cols=166  Identities=17%  Similarity=0.210  Sum_probs=118.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC--cCCCc-----c---------CCCccceEEEEEEE---CCeEEEEEEEeCCCccc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG--CFMEK-----Y---------DPTIEDFYRKEIEV---DKAPCVLEILDTAGTEQ  164 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~-----~---------~~t~~~~~~~~~~~---~~~~~~l~l~DtpG~~~  164 (286)
                      .-+++++||.++|||||+.+|+..  .+...     .         .+.+.......+.+   ++..+.+++||||||.+
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            347999999999999999999862  22111     0         01111111122222   45567899999999999


Q ss_pred             chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCC-
Q psy10504        165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCP-  243 (286)
Q Consensus       165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-  243 (286)
                      |...+..+++.+|++++|+|++++...++...|.....     .++|+++|+||+|+.....   ......+....+.+ 
T Consensus        87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-----~~lpiIvViNKiDl~~a~~---~~v~~ei~~~lg~~~  158 (600)
T PRK05433         87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NDLEIIPVLNKIDLPAADP---ERVKQEIEDVIGIDA  158 (600)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEEEECCCCCcccH---HHHHHHHHHHhCCCc
Confidence            99999999999999999999999877776666554432     2789999999999863221   22233444445543 


Q ss_pred             --EEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCc
Q psy10504        244 --FIEASAKNKTNVNEMFAEIVREMNFNPEKDNASF  277 (286)
Q Consensus       244 --~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~  277 (286)
                        ++++||++|.|+++++++|.+.++......+.++
T Consensus       159 ~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~~~~pl  194 (600)
T PRK05433        159 SDAVLVSAKTGIGIEEVLEAIVERIPPPKGDPDAPL  194 (600)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHHhCccccCCCCCCc
Confidence              8999999999999999999999987654444443

>cd04163 Era Era subfamily

Probab=99.83  E-value=1.8e-19  Score=145.31  Aligned_cols=155  Identities=23%  Similarity=0.191  Sum_probs=104.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCC--ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh--------hhhhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFME--KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS--------MRDLY  172 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~--------~~~~~  172 (286)
                      ...+|+++|++|+|||||++++.+..+..  ....++...........  ...+.+|||||......        .....
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   79 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDD--DAQIIFVDTPGIHKPKKKLGERMVKAAWSA   79 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcC--CeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence            46789999999999999999999865432  22233322223223333  34488999999764332        23445


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc-CCCEEEEeCCC
Q psy10504        173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW-GCPFIEASAKN  251 (286)
Q Consensus       173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~  251 (286)
                      +..+|++++|+|++++.+. ....+...+...    +.|+++|+||+|+... ..........+.... ..+++++|+++
T Consensus        80 ~~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~----~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~  153 (168)
T cd04163          80 LKDVDLVLFVVDASEPIGE-GDEFILELLKKS----KTPVILVLNKIDLVKD-KEDLLPLLEKLKELGPFAEIFPISALK  153 (168)
T ss_pred             HHhCCEEEEEEECCCccCc-hHHHHHHHHHHh----CCCEEEEEEchhcccc-HHHHHHHHHHHHhccCCCceEEEEecc
Confidence            7889999999999987221 122233333332    6899999999999732 222233334444444 37899999999


Q ss_pred             CCcHHHHHHHHHHH
Q psy10504        252 KTNVNEMFAEIVRE  265 (286)
Q Consensus       252 ~~gv~~l~~~i~~~  265 (286)
                      +.|+++++++|.+.
T Consensus       154 ~~~~~~l~~~l~~~  167 (168)
T cd04163         154 GENVDELLEEIVKY  167 (168)
T ss_pred             CCChHHHHHHHHhh
Confidence            99999999999775

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.83  E-value=1.7e-19  Score=168.64  Aligned_cols=152  Identities=20%  Similarity=0.257  Sum_probs=115.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcc--------cchhhhhhcccC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE--------QFASMRDLYIKN  175 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~--------~~~~~~~~~~~~  175 (286)
                      +|+++|++|||||||+|+|.+..  +....++++.+.......+++..  +.+|||||..        .+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGRE--FILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeE--EEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            58999999999999999999865  35566777777777788887776  8999999963        344456667899


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCCCc
Q psy10504        176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTN  254 (286)
Q Consensus       176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~g  254 (286)
                      +|++++|+|+.++.+..+. .+...+.+    .++|+++|+||+|+.+....     ... ....+. +++++||++|.|
T Consensus        79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~----~~~piilVvNK~D~~~~~~~-----~~~-~~~lg~~~~~~vSa~~g~g  147 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE-EIAKWLRK----SGKPVILVANKIDGKKEDAV-----AAE-FYSLGFGEPIPISAEHGRG  147 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH-HHHHHHHH----hCCCEEEEEECccCCccccc-----HHH-HHhcCCCCeEEEeCCcCCC
Confidence            9999999999986554432 22233333    27899999999998732221     112 234565 799999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q psy10504        255 VNEMFAEIVREMNFNP  270 (286)
Q Consensus       255 v~~l~~~i~~~i~~~~  270 (286)
                      ++++++++.+.+.+..
T Consensus       148 v~~ll~~i~~~l~~~~  163 (429)
T TIGR03594       148 IGDLLDAILELLPEEE  163 (429)
T ss_pred             hHHHHHHHHHhcCccc
Confidence            9999999999886643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.83  E-value=2.6e-19  Score=149.53  Aligned_cols=162  Identities=18%  Similarity=0.168  Sum_probs=106.3

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCc----------ccchhhh
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT----------EQFASMR  169 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~----------~~~~~~~  169 (286)
                      ++...++|+++|++|+|||||++++++..+...+.++.+......+...+  ..+.+|||||.          +++..+.
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN--DKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC--CeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            44567899999999999999999999976554444444322222221112  45899999994          3344444


Q ss_pred             hhcccCc---cEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCHHHHHHHHHhcCCCEE
Q psy10504        170 DLYIKNG---QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPTLDGQALAQSWGCPFI  245 (286)
Q Consensus       170 ~~~~~~~---d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~  245 (286)
                      ..+++.+   +++++|+|++++.+..+. .+...+..    .++|+++++||+|+.+.... ...............+++
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  172 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE----YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI  172 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH----cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence            5555544   678889998876544332 11222222    27899999999998632211 111122233333357899


Q ss_pred             EEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        246 EASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       246 ~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      ++||+++.|++++++.|.+.+++
T Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        173 LFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             EEEcCCCCCHHHHHHHHHHHhcC
Confidence            99999999999999999988765

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.83  E-value=1.4e-19  Score=169.12  Aligned_cols=162  Identities=18%  Similarity=0.168  Sum_probs=117.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccc----hhh---hhhcccCc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF----ASM---RDLYIKNG  176 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~----~~~---~~~~~~~~  176 (286)
                      .+|+|+|.||||||||+++|..... ...++.|+.......+..++..  +++|||||....    ..+   ..+.+..+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~--f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTR--FTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeE--EEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            5799999999999999999998543 4567778777777777777765  899999996421    112   22346779


Q ss_pred             cEEEEEEECCCc----ccHHHHHHHHHHHHHHh----------CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC
Q psy10504        177 QGFVVVYSLTNH----HTFQDIKQMKELITRVK----------GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC  242 (286)
Q Consensus       177 d~vilv~d~~~~----~s~~~~~~~~~~i~~~~----------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  242 (286)
                      |++++|+|+++.    ..++++..+...+..+.          ...++|++||+||+|+++. .... ..........++
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da-~el~-e~l~~~l~~~g~  315 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA-RELA-EFVRPELEARGW  315 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh-HHHH-HHHHHHHHHcCC
Confidence            999999999863    34555555555555443          1247899999999999732 2211 112222234578


Q ss_pred             CEEEEeCCCCCcHHHHHHHHHHHhhcCC
Q psy10504        243 PFIEASAKNKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       243 ~~~~vSa~~~~gv~~l~~~i~~~i~~~~  270 (286)
                      +++++||++++|+++++++|.+.+...+
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999886644

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.83  E-value=1.9e-19  Score=151.70  Aligned_cols=118  Identities=19%  Similarity=0.298  Sum_probs=90.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCc-cEEEEEEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNG-QGFVVVYS  184 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~-d~vilv~d  184 (286)
                      +|+++|+++||||||+++|..+.+...++++............+....+.+||+|||.+++..+..+++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999988776665543322222222223445589999999999999999999998 99999999


Q ss_pred             CCCc-ccHHHHHHHHHHHHHHh--CCCCCcEEEEEeCCCCCC
Q psy10504        185 LTNH-HTFQDIKQMKELITRVK--GSERVPILLVANKLDLAS  223 (286)
Q Consensus       185 ~~~~-~s~~~~~~~~~~i~~~~--~~~~~piivv~nK~Dl~~  223 (286)
                      +.+. .++..+..++..+....  ..+++|+++++||+|+..
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            9997 67777776665554322  235899999999999863

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG3883|consensus

Probab=99.83  E-value=6.1e-19  Score=136.66  Aligned_cols=174  Identities=30%  Similarity=0.431  Sum_probs=151.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCC--CccCCCccceEEEEEEECCe-EEEEEEEeCCCcccc-hhhhhhcccCccE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFM--EKYDPTIEDFYRKEIEVDKA-PCVLEILDTAGTEQF-ASMRDLYIKNGQG  178 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~-~~~l~l~DtpG~~~~-~~~~~~~~~~~d~  178 (286)
                      +..||+++|.-++|||+++.++..+..+  ..+.+|++|.+...+..+.+ .=.+.++||.|...+ ..+-.+|++-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            4579999999999999999999886554  45678888888887776543 334889999998777 6788899999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504        179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l  258 (286)
                      +++||+..|++||+.+..+...|.+.+....+|++|++||+|+. +.++++...+...++...+..++++|.+...+-+-
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~-~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA-EPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc-cchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            99999999999999998888888887777789999999999997 67778888889999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCcCCCc
Q psy10504        259 FAEIVREMNFNPEKDNASF  277 (286)
Q Consensus       259 ~~~i~~~i~~~~~~~~~~~  277 (286)
                      |..++..+.....+..++.
T Consensus       167 f~~l~~rl~~pqskS~Fpl  185 (198)
T KOG3883|consen  167 FTYLASRLHQPQSKSTFPL  185 (198)
T ss_pred             HHHHHHhccCCcccccCcc
Confidence            9999999988777766665

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.82  E-value=1.2e-19  Score=139.45  Aligned_cols=115  Identities=30%  Similarity=0.537  Sum_probs=86.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCC--ccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFME--KYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~--~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      ||+|+|+.|+|||||+++|++..+..  .+.++.+ ...............+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            79999999999999999999987761  1122222 33334555666666699999999999888888889999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCC
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLD  220 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~D  220 (286)
                      ||++++.+++.+..++..+.... ..+++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            99999999999866544444332 244799999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK11058 GTPase HflX; Provisional

Probab=99.82  E-value=5e-19  Score=164.09  Aligned_cols=156  Identities=17%  Similarity=0.200  Sum_probs=113.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccc--hhhh------hhcccC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF--ASMR------DLYIKN  175 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~--~~~~------~~~~~~  175 (286)
                      ++|+++|.+|+|||||+|+|.+..+ ..+..+++.+.....+.+.+.. .+.+|||||..+.  ..++      ...++.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            6899999999999999999998654 3455566667766677776541 2779999997432  2222      234688


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCC-EEEEeCCCCCc
Q psy10504        176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCP-FIEASAKNKTN  254 (286)
Q Consensus       176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~g  254 (286)
                      +|++++|+|++++.+.+.+..|...+... ...++|+++|+||+|+.+. .. ..  ..  ....+.+ ++++||++|.|
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~~~~pvIiV~NKiDL~~~-~~-~~--~~--~~~~~~~~~v~ISAktG~G  349 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEI-DAHEIPTLLVMNKIDMLDD-FE-PR--ID--RDEENKPIRVWLSAQTGAG  349 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHh-ccCCCCEEEEEEcccCCCc-hh-HH--HH--HHhcCCCceEEEeCCCCCC
Confidence            99999999999998888776655555443 2347899999999999622 11 11  11  1123445 58899999999


Q ss_pred             HHHHHHHHHHHhhc
Q psy10504        255 VNEMFAEIVREMNF  268 (286)
Q Consensus       255 v~~l~~~i~~~i~~  268 (286)
                      +++++++|.+.+..
T Consensus       350 IdeL~e~I~~~l~~  363 (426)
T PRK11058        350 IPLLFQALTERLSG  363 (426)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999998854

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.82  E-value=3.2e-19  Score=171.64  Aligned_cols=160  Identities=15%  Similarity=0.104  Sum_probs=112.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC---cCCCccCCC-ccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG---CFMEKYDPT-IEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~---~~~~~~~~t-~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      +.|+++|+++||||||+++|.+.   .+...+..+ +.+.....+..++  ..+.+||+|||++|...+..++.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            36899999999999999999963   233333333 2344444566666  45899999999999988888999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCC-CCHHHHHHHHHhc----CCCEEEEeCCCCCc
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQRE-VPTLDGQALAQSW----GCPFIEASAKNKTN  254 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~----~~~~~~vSa~~~~g  254 (286)
                      +|+|++++...+... .+..+..    .++| +++|+||+|+.+.... ....+...+.+..    +++++++||++|.|
T Consensus        79 LVVDa~~G~~~qT~e-hl~il~~----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~G  153 (581)
T TIGR00475        79 LVVDADEGVMTQTGE-HLAVLDL----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQG  153 (581)
T ss_pred             EEEECCCCCcHHHHH-HHHHHHH----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCC
Confidence            999999854322222 2222222    2677 9999999999732211 1122334444433    47899999999999


Q ss_pred             HHHHHHHHHHHhhcCCC
Q psy10504        255 VNEMFAEIVREMNFNPE  271 (286)
Q Consensus       255 v~~l~~~i~~~i~~~~~  271 (286)
                      ++++++++...+...+.
T Consensus       154 I~eL~~~L~~l~~~~~~  170 (581)
T TIGR00475       154 IGELKKELKNLLESLDI  170 (581)
T ss_pred             chhHHHHHHHHHHhCCC
Confidence            99999999887765443

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.82  E-value=2.2e-19  Score=177.00  Aligned_cols=156  Identities=22%  Similarity=0.244  Sum_probs=116.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCccc----------chhhh-
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ----------FASMR-  169 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~----------~~~~~-  169 (286)
                      ..++|+++|++|||||||++++.+...  +..+++|+.+.....+.+++..  +.+|||||..+          |..++ 
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            458999999999999999999999763  5677888888888888888877  67899999642          22222 


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHH-HHHHh----cCCCE
Q psy10504        170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQ-ALAQS----WGCPF  244 (286)
Q Consensus       170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~  244 (286)
                      ...++.+|++++|+|++++.+.++...+ ..+..    .++|+++|+||+|+.+...   ....+ .+...    ...++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i~-~~~~~----~~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l~~~~~~~i  598 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKVM-SMAVD----AGRALVLVFNKWDLMDEFR---RQRLERLWKTEFDRVTWARR  598 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH----cCCCEEEEEEchhcCChhH---HHHHHHHHHHhccCCCCCCE
Confidence            2346889999999999999888876543 33332    2789999999999973211   11111 12222    13578


Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        245 IEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       245 ~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      +++||++|.|++++++.+.+..+.
T Consensus       599 i~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        599 VNLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999887764

>PRK00089 era GTPase Era; Reviewed

Probab=99.82  E-value=5.5e-19  Score=157.08  Aligned_cols=161  Identities=20%  Similarity=0.201  Sum_probs=110.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCC--CccCCCccceEEEEEEECCeEEEEEEEeCCCcccch--------hhhhhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFM--EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA--------SMRDLY  172 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~--------~~~~~~  172 (286)
                      +.-.|+++|++|||||||+|++.+..+.  ...+.|+..........++  .++.+|||||.....        ......
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            5567999999999999999999987653  3444455444444444343  448999999975432        223446


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCC
Q psy10504        173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKN  251 (286)
Q Consensus       173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~  251 (286)
                      +.++|++++|+|++++.+. .....+..+.    ..+.|+++|+||+|+.. .........+.+.+..+ .+++++||++
T Consensus        82 ~~~~D~il~vvd~~~~~~~-~~~~i~~~l~----~~~~pvilVlNKiDl~~-~~~~l~~~~~~l~~~~~~~~i~~iSA~~  155 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIGP-GDEFILEKLK----KVKTPVILVLNKIDLVK-DKEELLPLLEELSELMDFAEIVPISALK  155 (292)
T ss_pred             HhcCCEEEEEEeCCCCCCh-hHHHHHHHHh----hcCCCEEEEEECCcCCC-CHHHHHHHHHHHHhhCCCCeEEEecCCC
Confidence            7889999999999983321 1222222222    23689999999999972 22222233444444444 6799999999


Q ss_pred             CCcHHHHHHHHHHHhhcCCC
Q psy10504        252 KTNVNEMFAEIVREMNFNPE  271 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i~~~~~  271 (286)
                      +.|++++++++.+.+++.+.
T Consensus       156 ~~gv~~L~~~L~~~l~~~~~  175 (292)
T PRK00089        156 GDNVDELLDVIAKYLPEGPP  175 (292)
T ss_pred             CCCHHHHHHHHHHhCCCCCC
Confidence            99999999999999987653

>COG1159 Era GTPase [General function prediction only]

Probab=99.82  E-value=5.1e-19  Score=152.52  Aligned_cols=165  Identities=19%  Similarity=0.184  Sum_probs=120.5

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh--------hhhh
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS--------MRDL  171 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~--------~~~~  171 (286)
                      ++.--|+++|.||+|||||+|++++.+.  ++.-+.|++..+...+..++.+  +.|+||||..+-..        ....
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~Q--iIfvDTPGih~pk~~l~~~m~~~a~~   81 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQ--IIFVDTPGIHKPKHALGELMNKAARS   81 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCce--EEEEeCCCCCCcchHHHHHHHHHHHH
Confidence            4556799999999999999999999765  6777888888888888888666  88999999543322        2334


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCC
Q psy10504        172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAK  250 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~  250 (286)
                      .+.++|++++|+|++++....+ ...++.+..    .+.|+++++||+|...+.... ....+.+..... ..++++||+
T Consensus        82 sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~----~~~pvil~iNKID~~~~~~~l-~~~~~~~~~~~~f~~ivpiSA~  155 (298)
T COG1159          82 ALKDVDLILFVVDADEGWGPGD-EFILEQLKK----TKTPVILVVNKIDKVKPKTVL-LKLIAFLKKLLPFKEIVPISAL  155 (298)
T ss_pred             HhccCcEEEEEEeccccCCccH-HHHHHHHhh----cCCCeEEEEEccccCCcHHHH-HHHHHHHHhhCCcceEEEeecc
Confidence            5788999999999998543322 222333333    267999999999987332211 222222232222 579999999


Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCcC
Q psy10504        251 NKTNVNEMFAEIVREMNFNPEKDN  274 (286)
Q Consensus       251 ~~~gv~~l~~~i~~~i~~~~~~~~  274 (286)
                      +|.|++.+.+.+...+++.+....
T Consensus       156 ~g~n~~~L~~~i~~~Lpeg~~~yp  179 (298)
T COG1159         156 KGDNVDTLLEIIKEYLPEGPWYYP  179 (298)
T ss_pred             ccCCHHHHHHHHHHhCCCCCCcCC
Confidence            999999999999999998775443

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.82  E-value=6.5e-19  Score=165.01  Aligned_cols=151  Identities=21%  Similarity=0.258  Sum_probs=110.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCccc--------chhhhhhccc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ--------FASMRDLYIK  174 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~--------~~~~~~~~~~  174 (286)
                      ++|+++|++|||||||+++|.+..  .....++++.+.......+++..  +.+|||||++.        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGRE--FILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcE--EEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            589999999999999999999875  35666677777777777887754  89999999886        2223455678


Q ss_pred             CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCCC
Q psy10504        175 NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKT  253 (286)
Q Consensus       175 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~  253 (286)
                      .+|++++|+|++++.+..+.. ....+..    .++|+++|+||+|+.+  .   ......+ ...+. .++++||++|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~-~~~~l~~----~~~piilv~NK~D~~~--~---~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEE-IAKILRK----SNKPVILVVNKVDGPD--E---EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCcc--c---hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            999999999999865443321 1122222    2789999999999752  1   1122222 34454 48999999999


Q ss_pred             cHHHHHHHHHHHhhc
Q psy10504        254 NVNEMFAEIVREMNF  268 (286)
Q Consensus       254 gv~~l~~~i~~~i~~  268 (286)
                      |++++++++.+....
T Consensus       149 gv~~l~~~I~~~~~~  163 (435)
T PRK00093        149 GIGDLLDAILEELPE  163 (435)
T ss_pred             CHHHHHHHHHhhCCc
Confidence            999999999985543

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.82  E-value=8.1e-19  Score=160.95  Aligned_cols=163  Identities=18%  Similarity=0.189  Sum_probs=120.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch-------hhhhhcccCcc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA-------SMRDLYIKNGQ  177 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~-------~~~~~~~~~~d  177 (286)
                      .|+|+|.||||||||+|+|.+... ++.++.|+.......+..++.. .+.|+||||..+-.       ......+..+|
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~-~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDER-SFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCc-EEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            699999999999999999998543 5677888887777777776432 28899999965321       11223578899


Q ss_pred             EEEEEEECC---CcccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--CCEEEEeCCC
Q psy10504        178 GFVVVYSLT---NHHTFQDIKQMKELITRVK-GSERVPILLVANKLDLASHQREVPTLDGQALAQSWG--CPFIEASAKN  251 (286)
Q Consensus       178 ~vilv~d~~---~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~  251 (286)
                      ++++|+|++   +...+++...|...+..+. ...++|+++|+||+|+.. .... ......+.+..+  .+++++||++
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~-~~el-~~~l~~l~~~~~~~~~Vi~ISA~t  317 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD-EEEA-EERAKAIVEALGWEGPVYLISAAS  317 (390)
T ss_pred             EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC-hHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence            999999998   4556777777777776642 223689999999999862 2221 223344444444  4789999999


Q ss_pred             CCcHHHHHHHHHHHhhcCCC
Q psy10504        252 KTNVNEMFAEIVREMNFNPE  271 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i~~~~~  271 (286)
                      +.|+++++++|.+.+++.+.
T Consensus       318 g~GIdeLl~~I~~~L~~~~~  337 (390)
T PRK12298        318 GLGVKELCWDLMTFIEENPR  337 (390)
T ss_pred             CcCHHHHHHHHHHHhhhCcc
Confidence            99999999999999977543

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.81  E-value=2.4e-19  Score=148.02  Aligned_cols=150  Identities=17%  Similarity=0.191  Sum_probs=96.4

Q ss_pred             CCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEE-EEEEECCeEEEEEEEeCCCcc----------cchh
Q psy10504         99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYR-KEIEVDKAPCVLEILDTAGTE----------QFAS  167 (286)
Q Consensus        99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~l~DtpG~~----------~~~~  167 (286)
                      .+..+.++|+++|++|+|||||++++++..+.....++.+.... ..+..++   .+.+|||||..          .+..
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~   89 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK   89 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence            34457789999999999999999999987644333333322222 1222232   38899999953          2333


Q ss_pred             hhhhccc---CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHhcC--
Q psy10504        168 MRDLYIK---NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ-REVPTLDGQALAQSWG--  241 (286)
Q Consensus       168 ~~~~~~~---~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~--  241 (286)
                      +...+++   .++++++|+|++++.+..+.. ++..+..    .++|+++++||+|+.+.. ......+.+......+  
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~  164 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD  164 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCC
Confidence            4445554   358999999998866555543 2333332    278999999999986321 1112223333333433  


Q ss_pred             CCEEEEeCCCCCcHH
Q psy10504        242 CPFIEASAKNKTNVN  256 (286)
Q Consensus       242 ~~~~~vSa~~~~gv~  256 (286)
                      .+++++||++|+|++
T Consensus       165 ~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       165 PSVQLFSSLKKTGID  179 (179)
T ss_pred             CceEEEECCCCCCCC
Confidence            589999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.81  E-value=5e-19  Score=165.78  Aligned_cols=156  Identities=22%  Similarity=0.259  Sum_probs=112.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh----------hh-
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS----------MR-  169 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~----------~~-  169 (286)
                      ..++|+++|++|+|||||++++++..  .....++++.+.....+..++..  +.+|||||+.+...          .+ 
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQK--YTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCee--EEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            57999999999999999999999754  35566677777776777777766  78899999653222          11 


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh----cCCCEE
Q psy10504        170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS----WGCPFI  245 (286)
Q Consensus       170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~  245 (286)
                      ..+++.+|++++|+|++++.+.++..-+ ..+..    .++|+++|+||+|+.+. .. .......+...    ..++++
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~-~~~~~----~~~~~ivv~NK~Dl~~~-~~-~~~~~~~~~~~l~~~~~~~i~  322 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLRIA-GLALE----AGRALVIVVNKWDLVDE-KT-MEEFKKELRRRLPFLDYAPIV  322 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCcEEEEEECccCCCH-HH-HHHHHHHHHHhcccccCCCEE
Confidence            2367889999999999998777665432 22222    27899999999998721 11 11111122222    247999


Q ss_pred             EEeCCCCCcHHHHHHHHHHHhh
Q psy10504        246 EASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       246 ~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      ++||++|.|++++++.+.+...
T Consensus       323 ~~SA~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        323 FISALTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999887554

>PRK10218 GTP-binding protein; Provisional

Probab=99.81  E-value=1.3e-18  Score=167.18  Aligned_cols=169  Identities=15%  Similarity=0.154  Sum_probs=117.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc--CcCCCccC------------CCcc-ceEEEEEEECCeEEEEEEEeCCCcccchh
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS--GCFMEKYD------------PTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFAS  167 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~~~~------------~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~  167 (286)
                      +.-+|+++|+.++|||||+++|+.  +.+.....            .+.+ +.......+....+.+.+||||||.+|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            346899999999999999999997  44433211            1111 22223333444456699999999999999


Q ss_pred             hhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-------hc
Q psy10504        168 MRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-------SW  240 (286)
Q Consensus       168 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~  240 (286)
                      .+..+++.+|++++|+|++++...+.... +..+..    .++|.++++||+|+..........+...+..       ..
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~~-l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~  158 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQTRFV-TKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL  158 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHHHHH-HHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence            99999999999999999998654443333 333332    2789999999999874333222233333321       23


Q ss_pred             CCCEEEEeCCCCC----------cHHHHHHHHHHHhhcCCCCcCCC
Q psy10504        241 GCPFIEASAKNKT----------NVNEMFAEIVREMNFNPEKDNAS  276 (286)
Q Consensus       241 ~~~~~~vSa~~~~----------gv~~l~~~i~~~i~~~~~~~~~~  276 (286)
                      .+|++.+||++|.          |+..+++.|++.++......+.+
T Consensus       159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~P  204 (607)
T PRK10218        159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGP  204 (607)
T ss_pred             CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCC
Confidence            4789999999998          69999999999998665433444

>KOG1673|consensus

Probab=99.81  E-value=3.8e-19  Score=138.09  Aligned_cols=169  Identities=22%  Similarity=0.400  Sum_probs=142.3

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG  178 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~  178 (286)
                      ...-.+||.++|++..|||||+-.+.++.+...+..+.+ .+..+++.+.+..+.+.+||.+|++++..+.+....++-+
T Consensus        16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva   95 (205)
T KOG1673|consen   16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA   95 (205)
T ss_pred             ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence            344679999999999999999999999988777776666 6777889999999999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC----CCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy10504        179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA----SHQREVPTLDGQALAQSWGCPFIEASAKNKTN  254 (286)
Q Consensus       179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g  254 (286)
                      ++++||.+.+.++..+..|+....... ...+| |+|+||.|..    .+.++.-..+...+++.++.+.++||+.+..|
T Consensus        96 IlFmFDLt~r~TLnSi~~WY~QAr~~N-ktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN  173 (205)
T KOG1673|consen   96 ILFMFDLTRRSTLNSIKEWYRQARGLN-KTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN  173 (205)
T ss_pred             EEEEEecCchHHHHHHHHHHHHHhccC-Cccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence            999999999999999999999877653 23566 6789999963    11222223356777888899999999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q psy10504        255 VNEMFAEIVREMNFNP  270 (286)
Q Consensus       255 v~~l~~~i~~~i~~~~  270 (286)
                      +.++|+.++.++-..+
T Consensus       174 v~KIFK~vlAklFnL~  189 (205)
T KOG1673|consen  174 VQKIFKIVLAKLFNLP  189 (205)
T ss_pred             HHHHHHHHHHHHhCCc
Confidence            9999999998876544

>KOG0462|consensus

Probab=99.80  E-value=5e-19  Score=162.09  Aligned_cols=172  Identities=19%  Similarity=0.148  Sum_probs=136.7

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCc--CCC--------------ccCCCccceE-EEEEEECCeEEEEEEEeCCCccc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGC--FME--------------KYDPTIEDFY-RKEIEVDKAPCVLEILDTAGTEQ  164 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~--------------~~~~t~~~~~-~~~~~~~~~~~~l~l~DtpG~~~  164 (286)
                      .+--++.|+-|.++|||||.++|+...  ...              .+.+-+.-.. ...+..++..+.+.++|||||.+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            345579999999999999999998621  111              1111111111 12222337778899999999999


Q ss_pred             chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCE
Q psy10504        165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPF  244 (286)
Q Consensus       165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  244 (286)
                      |..-..+.+..|+++++|+|+..+...+.+..++.++..     +..+|.|+||+|++.++.+....+...+......++
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~  212 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA-----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEV  212 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccce
Confidence            999999999999999999999999988888888777776     889999999999996666555556666666666789


Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504        245 IEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC  278 (286)
Q Consensus       245 ~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~~  278 (286)
                      +.+||++|.|+.+++++|++.++..+...+.+++
T Consensus       213 i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~plr  246 (650)
T KOG0462|consen  213 IYVSAKTGLNVEELLEAIIRRVPPPKGIRDAPLR  246 (650)
T ss_pred             EEEEeccCccHHHHHHHHHhhCCCCCCCCCcchH
Confidence            9999999999999999999999999988888876

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.80  E-value=1.1e-18  Score=158.29  Aligned_cols=150  Identities=18%  Similarity=0.199  Sum_probs=115.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch--h-------hhhhcc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA--S-------MRDLYI  173 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~--~-------~~~~~~  173 (286)
                      +.|+++|.||||||||+|+|.+.  ..+++.+++++|.......+.+..  |.++||+|.+...  .       .....+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            67999999999999999999996  458999999999999999999998  8999999976433  1       233456


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCC
Q psy10504        174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNK  252 (286)
Q Consensus       174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~  252 (286)
                      ..||+++||+|...+-+-++-.- ...+..    .++|+++|+||+|..      ..+........+| -..+.+||.+|
T Consensus        82 ~eADvilfvVD~~~Git~~D~~i-a~~Lr~----~~kpviLvvNK~D~~------~~e~~~~efyslG~g~~~~ISA~Hg  150 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEI-AKILRR----SKKPVILVVNKIDNL------KAEELAYEFYSLGFGEPVPISAEHG  150 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHH-HHHHHh----cCCCEEEEEEcccCc------hhhhhHHHHHhcCCCCceEeehhhc
Confidence            88999999999988655444221 122222    368999999999975      1112222233344 56899999999


Q ss_pred             CcHHHHHHHHHHHhh
Q psy10504        253 TNVNEMFAEIVREMN  267 (286)
Q Consensus       253 ~gv~~l~~~i~~~i~  267 (286)
                      .|+.+|.+++++.++
T Consensus       151 ~Gi~dLld~v~~~l~  165 (444)
T COG1160         151 RGIGDLLDAVLELLP  165 (444)
T ss_pred             cCHHHHHHHHHhhcC
Confidence            999999999999984

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.80  E-value=1.6e-18  Score=157.27  Aligned_cols=159  Identities=23%  Similarity=0.270  Sum_probs=119.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh----------h-
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM----------R-  169 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~----------~-  169 (286)
                      ..+||+++|.||+|||||+|++++.  ..+...++|+.+.+...+..++..  +.++||+|..+-...          + 
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence            5799999999999999999999985  457889999999999999999998  888999995532222          1 


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc----CCCEE
Q psy10504        170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW----GCPFI  245 (286)
Q Consensus       170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~  245 (286)
                      ...+..+|++++|+|++.+.+-++.+-.- .+.    ..+.++++|+||+|+.+........-...+...+    ..+++
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~-~i~----~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~  329 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDLRIAG-LIE----EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIV  329 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHHHHHH-HHH----HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEE
Confidence            23457799999999999987666654322 222    2388999999999997432222122222222222    27899


Q ss_pred             EEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        246 EASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       246 ~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      ++||++|.|+.++|+++.+....
T Consensus       330 ~iSA~~~~~i~~l~~~i~~~~~~  352 (444)
T COG1160         330 FISALTGQGLDKLFEAIKEIYEC  352 (444)
T ss_pred             EEEecCCCChHHHHHHHHHHHHH
Confidence            99999999999999998875443

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.80  E-value=1.7e-18  Score=166.45  Aligned_cols=165  Identities=16%  Similarity=0.198  Sum_probs=113.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhc--CcCCCcc---------------CCCccceEEEEEEECCeEEEEEEEeCCCcccchhh
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS--GCFMEKY---------------DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM  168 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~--~~~~~~~---------------~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~  168 (286)
                      +|+|+||.++|||||+++|+.  +.+....               .+.+.......+.+.+  +.+.+||||||.+|...
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~e   80 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGGE   80 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHHH
Confidence            699999999999999999986  3332211               1111111223344444  55899999999999999


Q ss_pred             hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-------HhcC
Q psy10504        169 RDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA-------QSWG  241 (286)
Q Consensus       169 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~  241 (286)
                      +..+++.+|++++|+|++++.. .....|+..+..    .++|+++|+||+|+..........+...+.       +...
T Consensus        81 v~~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~  155 (594)
T TIGR01394        81 VERVLGMVDGVLLLVDASEGPM-PQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLD  155 (594)
T ss_pred             HHHHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccccc
Confidence            9999999999999999988543 333445554444    278999999999986322111112222222       2234


Q ss_pred             CCEEEEeCCCCC----------cHHHHHHHHHHHhhcCCCCcCCCc
Q psy10504        242 CPFIEASAKNKT----------NVNEMFAEIVREMNFNPEKDNASF  277 (286)
Q Consensus       242 ~~~~~vSa~~~~----------gv~~l~~~i~~~i~~~~~~~~~~~  277 (286)
                      ++++++||++|.          |++.+|+.|++.++......+.++
T Consensus       156 ~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl  201 (594)
T TIGR01394       156 FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPL  201 (594)
T ss_pred             CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCE
Confidence            789999999995          899999999999986654334443

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.80  E-value=1.8e-18  Score=157.19  Aligned_cols=154  Identities=22%  Similarity=0.313  Sum_probs=121.3

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh--------hhh
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM--------RDL  171 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~--------~~~  171 (286)
                      ...+|++++|.||+|||||+|+|.+.  ..+.+.++|++|.....+.++|..  +.++||+|.++-...        ...
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~  292 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKK  292 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHH
Confidence            36799999999999999999999984  568999999999999999999999  888999998765543        233


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504        172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN  251 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  251 (286)
                      .++.||.+++|+|++.+.+-++.....      ....++|+++|.||.|+......      .......+.+++.+||++
T Consensus       293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~------~~~~~~~~i~v~NK~DL~~~~~~------~~~~~~~~~~~i~iSa~t  360 (454)
T COG0486         293 AIEEADLVLFVLDASQPLDKEDLALIE------LLPKKKPIIVVLNKADLVSKIEL------ESEKLANGDAIISISAKT  360 (454)
T ss_pred             HHHhCCEEEEEEeCCCCCchhhHHHHH------hcccCCCEEEEEechhccccccc------chhhccCCCceEEEEecC
Confidence            568899999999999974333332211      22347899999999999833221      111223345799999999


Q ss_pred             CCcHHHHHHHHHHHhhcC
Q psy10504        252 KTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i~~~  269 (286)
                      |+|++.+.+.|.+.+...
T Consensus       361 ~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         361 GEGLDALREAIKQLFGKG  378 (454)
T ss_pred             ccCHHHHHHHHHHHHhhc
Confidence            999999999999988766

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.79  E-value=4.4e-18  Score=167.83  Aligned_cols=155  Identities=20%  Similarity=0.228  Sum_probs=110.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCccc--------chhhhhhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ--------FASMRDLY  172 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~--------~~~~~~~~  172 (286)
                      ...+|+++|++|||||||+|+|++...  ....++++.+........++..  +.+|||||.+.        +......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTD--FKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEE--EEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            457899999999999999999998653  4555666666666666666665  88999999763        23344567


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504        173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK  252 (286)
Q Consensus       173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~  252 (286)
                      ++.+|++++|+|++++....+ ..|...+..    .++|+++|+||+|+....    ....+......+ ..+++||++|
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~----~~~pvIlV~NK~D~~~~~----~~~~~~~~lg~~-~~~~iSA~~g  421 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR----AGKPVVLAVNKIDDQASE----YDAAEFWKLGLG-EPYPISAMHG  421 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh----cCCCEEEEEECcccccch----hhHHHHHHcCCC-CeEEEECCCC
Confidence            899999999999987533222 133334433    378999999999986211    111121222222 4578999999


Q ss_pred             CcHHHHHHHHHHHhhcC
Q psy10504        253 TNVNEMFAEIVREMNFN  269 (286)
Q Consensus       253 ~gv~~l~~~i~~~i~~~  269 (286)
                      .|+++++++|++.++..
T Consensus       422 ~GI~eLl~~i~~~l~~~  438 (712)
T PRK09518        422 RGVGDLLDEALDSLKVA  438 (712)
T ss_pred             CCchHHHHHHHHhcccc
Confidence            99999999999998663

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.79  E-value=1.2e-18  Score=162.76  Aligned_cols=153  Identities=22%  Similarity=0.210  Sum_probs=100.2

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhc--CcCCC------------------------------ccCCCccceEEEEEEECC
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVS--GCFME------------------------------KYDPTIEDFYRKEIEVDK  149 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~------------------------------~~~~t~~~~~~~~~~~~~  149 (286)
                      ...++|+++|++++|||||+.+|+.  +.+..                              ...+.+.+.....+..++
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            3568999999999999999999986  22211                              011222233333444444


Q ss_pred             eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC--
Q psy10504        150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE--  227 (286)
Q Consensus       150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~--  227 (286)
                        +.+.+||||||++|......++..+|++++|+|++++.+.. ..++...+.........|+++|+||+|+.+..+.  
T Consensus        85 --~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~-~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~  161 (426)
T TIGR00483        85 --YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEV-QPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEF  161 (426)
T ss_pred             --eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCccc-CCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHH
Confidence              45899999999998877777789999999999999985321 1222221111111223579999999999632221  


Q ss_pred             -CCHHHHHHHHHhcC-----CCEEEEeCCCCCcHHH
Q psy10504        228 -VPTLDGQALAQSWG-----CPFIEASAKNKTNVNE  257 (286)
Q Consensus       228 -~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~  257 (286)
                       ....+...+.+..+     ++++++||++|.|+++
T Consensus       162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence             11234445555554     5799999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.79  E-value=1.6e-18  Score=161.85  Aligned_cols=151  Identities=21%  Similarity=0.218  Sum_probs=98.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC--cCCC------------------------------ccCCCccceEEEEEEECCe
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG--CFME------------------------------KYDPTIEDFYRKEIEVDKA  150 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~------------------------------~~~~t~~~~~~~~~~~~~~  150 (286)
                      ..++|+++|++++|||||+++|+..  ....                              ...+++.+.....+..++ 
T Consensus         5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~-   83 (425)
T PRK12317          5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK-   83 (425)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC-
Confidence            5689999999999999999999842  1111                              123344444444454444 


Q ss_pred             EEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC--
Q psy10504        151 PCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASHQRE--  227 (286)
Q Consensus       151 ~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~--  227 (286)
                       +.+.|||||||++|.......+..+|++++|+|++++...... ...+..+.. .  ...|+++++||+|+.+....  
T Consensus        84 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~--~~~~iivviNK~Dl~~~~~~~~  159 (425)
T PRK12317         84 -YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-L--GINQLIVAINKMDAVNYDEKRY  159 (425)
T ss_pred             -eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-c--CCCeEEEEEEccccccccHHHH
Confidence             4589999999998877666677899999999999983222111 112222222 1  12469999999999731111  


Q ss_pred             -CCHHHHHHHHHhcC-----CCEEEEeCCCCCcHHHH
Q psy10504        228 -VPTLDGQALAQSWG-----CPFIEASAKNKTNVNEM  258 (286)
Q Consensus       228 -~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~l  258 (286)
                       ....+...+.+..+     ++++++||++|+|++++
T Consensus       160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~  196 (425)
T PRK12317        160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK  196 (425)
T ss_pred             HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence             11223344444444     57999999999999873

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.79  E-value=4.9e-18  Score=167.38  Aligned_cols=154  Identities=17%  Similarity=0.294  Sum_probs=114.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh----------hhh
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM----------RDL  171 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~----------~~~  171 (286)
                      +.++|+++|++|+|||||+|++.+... ..++++++.+.....+..++..  +.+|||||+..+...          ...
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~--i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQ--VTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceE--EEEEECCCccccccccccccHHHHHHHH
Confidence            457999999999999999999998543 4455666555555556555555  889999998876432          122


Q ss_pred             cc--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC
Q psy10504        172 YI--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASA  249 (286)
Q Consensus       172 ~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa  249 (286)
                      ++  ..+|++++|+|+++.+..   ..+...+.+    .++|+++++||+|+.+ .+.. ..+.+.+.+..+++++++||
T Consensus        80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~-~~~i-~id~~~L~~~LG~pVvpiSA  150 (772)
T PRK09554         80 YILSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAE-KQNI-RIDIDALSARLGCPVIPLVS  150 (772)
T ss_pred             HHhccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhh-ccCc-HHHHHHHHHHhCCCEEEEEe
Confidence            32  479999999999885432   223333333    2789999999999862 2222 34567788889999999999


Q ss_pred             CCCCcHHHHHHHHHHHhh
Q psy10504        250 KNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       250 ~~~~gv~~l~~~i~~~i~  267 (286)
                      ++|+|++++.+.+.+...
T Consensus       151 ~~g~GIdeL~~~I~~~~~  168 (772)
T PRK09554        151 TRGRGIEALKLAIDRHQA  168 (772)
T ss_pred             ecCCCHHHHHHHHHHhhh
Confidence            999999999999988654

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.79  E-value=7.6e-18  Score=135.10  Aligned_cols=158  Identities=21%  Similarity=0.321  Sum_probs=116.5

Q ss_pred             CCCcceEEEEEECCCCCcHHHHHHHHhcCcCCC--------ccCC---CccceEEEEEEECC-eEEEEEEEeCCCcccch
Q psy10504         99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFME--------KYDP---TIEDFYRKEIEVDK-APCVLEILDTAGTEQFA  166 (286)
Q Consensus        99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~--------~~~~---t~~~~~~~~~~~~~-~~~~l~l~DtpG~~~~~  166 (286)
                      .......||++.|+.++||||+++++.....+.        .+..   |+.........+++ ..  +.++|||||++|.
T Consensus         5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~--v~LfgtPGq~RF~   82 (187)
T COG2229           5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTG--VHLFGTPGQERFK   82 (187)
T ss_pred             cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcce--EEEecCCCcHHHH
Confidence            345678999999999999999999999865321        1111   22222222333444 34  8899999999999


Q ss_pred             hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-Hh-cCCCE
Q psy10504        167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA-QS-WGCPF  244 (286)
Q Consensus       167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~-~~~~~  244 (286)
                      .+|..+.+++.++|+++|.+++..+ +....+..+... .  .+|++|++||.|+.+..   +.++...+. .. ...++
T Consensus        83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~-~--~ip~vVa~NK~DL~~a~---ppe~i~e~l~~~~~~~~v  155 (187)
T COG2229          83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR-N--PIPVVVAINKQDLFDAL---PPEKIREALKLELLSVPV  155 (187)
T ss_pred             HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc-c--CCCEEEEeeccccCCCC---CHHHHHHHHHhccCCCce
Confidence            9999999999999999999999888 444444444442 1  28999999999998332   333443333 33 37999


Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy10504        245 IEASAKNKTNVNEMFAEIVRE  265 (286)
Q Consensus       245 ~~vSa~~~~gv~~l~~~i~~~  265 (286)
                      ++.+|.+++++.+.++.+..+
T Consensus       156 i~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         156 IEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eeeecccchhHHHHHHHHHhh
Confidence            999999999999999988876

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.79  E-value=2.7e-18  Score=165.01  Aligned_cols=160  Identities=20%  Similarity=0.259  Sum_probs=104.9

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEE-EEC------CeE-----E-----EEEEEeCCCcc
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEI-EVD------KAP-----C-----VLEILDTAGTE  163 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~-~~~------~~~-----~-----~l~l~DtpG~~  163 (286)
                      ..|.+.|+++|++|+|||||+++|.+..+....++.++....... ..+      +..     .     .++|||||||+
T Consensus         3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e   82 (586)
T PRK04004          3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE   82 (586)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence            346788999999999999999999887665555544332221111 100      111     1     16899999999


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CC-----------H-
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VP-----------T-  230 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~-----------~-  230 (286)
                      .|..++..++..+|++++|+|++++...+....+ ..+..    .++|+++++||+|+.+.... ..           . 
T Consensus        83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~~~~~----~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~  157 (586)
T PRK04004         83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAI-NILKR----RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR  157 (586)
T ss_pred             HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-HHHHH----cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence            9999999999999999999999984322222221 12222    37899999999998521110 00           0 


Q ss_pred             --HH-------H-HHHHH------------hc--CCCEEEEeCCCCCcHHHHHHHHHHH
Q psy10504        231 --LD-------G-QALAQ------------SW--GCPFIEASAKNKTNVNEMFAEIVRE  265 (286)
Q Consensus       231 --~~-------~-~~~~~------------~~--~~~~~~vSa~~~~gv~~l~~~i~~~  265 (286)
                        ..       . ..+.+            .+  .++++++||++|+|++++++.+...
T Consensus       158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~  216 (586)
T PRK04004        158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL  216 (586)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence              00       0 01110            11  2679999999999999999988653

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.79  E-value=2.3e-18  Score=165.88  Aligned_cols=145  Identities=18%  Similarity=0.283  Sum_probs=108.7

Q ss_pred             CCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh------hhhcc--cCccEEEE
Q psy10504        111 GSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM------RDLYI--KNGQGFVV  181 (286)
Q Consensus       111 G~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~------~~~~~--~~~d~vil  181 (286)
                      |.+|+|||||+|++.+... ..++++++.+.....+..++..  +++|||||+.++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998765 4455666656666677777766  789999999877653      33343  47899999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |+|+++.+.   ...+...+.+    .++|+++|+||+|+.+ .+... .+.+.+.+..+++++++||++|+|+++++++
T Consensus        79 VvDat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~-~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~  149 (591)
T TIGR00437        79 VVDASNLER---NLYLTLQLLE----LGIPMILALNLVDEAE-KKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDA  149 (591)
T ss_pred             EecCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHH-hCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHH
Confidence            999987532   1122222222    3789999999999862 22222 3467788889999999999999999999999


Q ss_pred             HHHHh
Q psy10504        262 IVREM  266 (286)
Q Consensus       262 i~~~i  266 (286)
                      +.+..
T Consensus       150 i~~~~  154 (591)
T TIGR00437       150 IRKAI  154 (591)
T ss_pred             HHHHh
Confidence            98764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.79  E-value=1.7e-18  Score=160.50  Aligned_cols=174  Identities=15%  Similarity=0.104  Sum_probs=109.4

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCc----cCCCccceE------------------EEEEEECC------eEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEK----YDPTIEDFY------------------RKEIEVDK------APCV  153 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~----~~~t~~~~~------------------~~~~~~~~------~~~~  153 (286)
                      ...++|+++|++++|||||+++|.+......    ..+.+.+..                  ......++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            3568999999999999999999975322110    000000000                  00000011      1345


Q ss_pred             EEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCHHH
Q psy10504        154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPTLD  232 (286)
Q Consensus       154 l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~  232 (286)
                      +++||||||++|...+...+..+|++++|+|++++.........+..+.. .  ...|+++++||+|+.+.... ....+
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~--gi~~iIVvvNK~Dl~~~~~~~~~~~~  158 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-I--GIKNIVIVQNKIDLVSKEKALENYEE  158 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-c--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence            89999999999998888888899999999999975411122222222222 1  13478999999999732111 11122


Q ss_pred             HHHHHHhc---CCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504        233 GQALAQSW---GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC  278 (286)
Q Consensus       233 ~~~~~~~~---~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~~  278 (286)
                      ...+....   +++++++||++|+|+++++++|...++......+.+++
T Consensus       159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~~~~~~~  207 (406)
T TIGR03680       159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTPERDLDKPPL  207 (406)
T ss_pred             HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCCCCCCCcE
Confidence            22232222   57899999999999999999999987654444444544

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd00880 Era_like Era (E

Probab=99.78  E-value=3.8e-18  Score=135.98  Aligned_cols=151  Identities=21%  Similarity=0.260  Sum_probs=103.6

Q ss_pred             EECCCCCcHHHHHHHHhcCcCC--CccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh-------hhhcccCccEE
Q psy10504        109 VLGSGGVGKSALTVQFVSGCFM--EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM-------RDLYIKNGQGF  179 (286)
Q Consensus       109 ivG~~~~GKTSLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~-------~~~~~~~~d~v  179 (286)
                      ++|++|+|||||++++.+....  ....+++............ ...+.+|||||+..+...       ...+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999986443  2333333344444444432 234899999998765543       33477899999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHH--HHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL--DGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      ++|+|++++....... +.....    ..+.|+++|+||+|+..........  .........+.+++++||+++.|+.+
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  154 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE  154 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence            9999999987666654 222222    2388999999999987322211111  11222333458899999999999999


Q ss_pred             HHHHHHHH
Q psy10504        258 MFAEIVRE  265 (286)
Q Consensus       258 l~~~i~~~  265 (286)
                      +++++.+.
T Consensus       155 l~~~l~~~  162 (163)
T cd00880         155 LREALIEA  162 (163)
T ss_pred             HHHHHHhh
Confidence            99999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.78  E-value=2.7e-18  Score=145.31  Aligned_cols=147  Identities=21%  Similarity=0.182  Sum_probs=95.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC--cCCC------------------------------ccCCCccceEEEEEEECCeEEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG--CFME------------------------------KYDPTIEDFYRKEIEVDKAPCV  153 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~--~~~~------------------------------~~~~t~~~~~~~~~~~~~~~~~  153 (286)
                      +|+++|++|+|||||+++|+..  ....                              ...+++.+.....+..++..  
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~--   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRK--   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCce--
Confidence            5899999999999999999752  1110                              01222233333444455555  


Q ss_pred             EEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC---CCH
Q psy10504        154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE---VPT  230 (286)
Q Consensus       154 l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~---~~~  230 (286)
                      +.+|||||+++|.......++.+|++++|+|++++..-+... ....+.. .  ...++|+|+||+|+....+.   ...
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~~~~~~~-~--~~~~iIvviNK~D~~~~~~~~~~~i~  154 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRR-HSYILSL-L--GIRHVVVAVNKMDLVDYSEEVFEEIV  154 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHH-HHHHHHH-c--CCCcEEEEEEchhcccCCHHHHHHHH
Confidence            889999999988766677789999999999998864333222 2222222 1  12357889999998632211   011


Q ss_pred             HHHHHHHHhcC---CCEEEEeCCCCCcHHHH
Q psy10504        231 LDGQALAQSWG---CPFIEASAKNKTNVNEM  258 (286)
Q Consensus       231 ~~~~~~~~~~~---~~~~~vSa~~~~gv~~l  258 (286)
                      .+...+.+.++   .+++++||++|.|+++.
T Consensus       155 ~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         155 ADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            23344445555   45899999999999753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.77  E-value=8.7e-18  Score=162.28  Aligned_cols=167  Identities=14%  Similarity=0.116  Sum_probs=108.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC---cCCCcc-CCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG---CFMEKY-DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~---~~~~~~-~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      -|+++|++++|||||+++|.+.   .+.... .+.+.+.....+...+.. .+.|||||||++|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~-~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGR-VLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCc-EEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            4889999999999999999863   222222 222223222333332222 38899999999998888888999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCC-CCHHHHHHHHHhcC---CCEEEEeCCCCCcHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQRE-VPTLDGQALAQSWG---CPFIEASAKNKTNVN  256 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~---~~~~~vSa~~~~gv~  256 (286)
                      |+|++++..-+.... +..+..    .++| ++||+||+|+.+.... ....+...+....+   .+++++||++|.|++
T Consensus        81 VVda~eg~~~qT~eh-l~il~~----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~  155 (614)
T PRK10512         81 VVACDDGVMAQTREH-LAILQL----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID  155 (614)
T ss_pred             EEECCCCCcHHHHHH-HHHHHH----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence            999998543322222 222222    1456 5799999999732111 11122333333333   689999999999999


Q ss_pred             HHHHHHHHHhhcCCCCcCCCcee
Q psy10504        257 EMFAEIVREMNFNPEKDNASFCW  279 (286)
Q Consensus       257 ~l~~~i~~~i~~~~~~~~~~~~~  279 (286)
                      ++++.|.+.....+. .+.+++.
T Consensus       156 ~L~~~L~~~~~~~~~-~~~~~rl  177 (614)
T PRK10512        156 ALREHLLQLPEREHA-AQHRFRL  177 (614)
T ss_pred             HHHHHHHHhhccccC-cCCCceE
Confidence            999999876544332 3445443

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.77  E-value=9e-18  Score=140.47  Aligned_cols=145  Identities=20%  Similarity=0.177  Sum_probs=94.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCC--------C---------ccCCCccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFM--------E---------KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA  166 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~--------~---------~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~  166 (286)
                      +++|+++|++++|||||+++|+.....        .         ...+.+.+.....+.  ....++.|+||||+.+|.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~--~~~~~i~~iDtPG~~~~~   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE--TANRHYAHVDCPGHADYI   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec--CCCeEEEEEECcCHHHHH
Confidence            478999999999999999999863100        0         011222222222333  333458899999999988


Q ss_pred             hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCCC--CHHHHHHHHHhcC--
Q psy10504        167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQREV--PTLDGQALAQSWG--  241 (286)
Q Consensus       167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~--  241 (286)
                      ......+..+|++++|+|++.+...+... .+..+..    .++| +|+++||+|+.......  ...+...+....+  
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~  154 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPMPQTRE-HLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFD  154 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCcHHHHH-HHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccc
Confidence            87788889999999999998764433322 2233332    2666 78999999986222111  1122333333333  


Q ss_pred             ---CCEEEEeCCCCCcH
Q psy10504        242 ---CPFIEASAKNKTNV  255 (286)
Q Consensus       242 ---~~~~~vSa~~~~gv  255 (286)
                         ++++++||++|.|.
T Consensus       155 ~~~v~iipiSa~~g~n~  171 (195)
T cd01884         155 GDNTPIVRGSALKALEG  171 (195)
T ss_pred             ccCCeEEEeeCccccCC
Confidence               68999999999885

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.77  E-value=1.3e-17  Score=154.06  Aligned_cols=170  Identities=16%  Similarity=0.179  Sum_probs=111.8

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCC-----------------ccCCCccceEEEEEEECCeEEEEEEEeCCCccc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFME-----------------KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ  164 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~  164 (286)
                      .+.++|+++|++++|||||+++|++.....                 ...+.+.+..  ...+......+.|+|||||++
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~--~~~~~~~~~~i~~iDtPGh~~   87 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTA--HVEYETEKRHYAHVDCPGHAD   87 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEE--eeEecCCCcEEEEEECCCHHH
Confidence            357999999999999999999998621100                 0122222222  233333334588999999999


Q ss_pred             chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCCC--CHHHHHHHHHhcC
Q psy10504        165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQREV--PTLDGQALAQSWG  241 (286)
Q Consensus       165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~  241 (286)
                      |.......+..+|++++|+|++++...+.... +..+..    .++| +|+++||+|+.+.....  ...+...+.+..+
T Consensus        88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~-~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~  162 (394)
T PRK12736         88 YVKNMITGAAQMDGAILVVAATDGPMPQTREH-ILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCchhHHHH-HHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence            98777777889999999999988644333322 222332    2678 67889999987322211  1123333433443


Q ss_pred             -----CCEEEEeCCCCC--------cHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504        242 -----CPFIEASAKNKT--------NVNEMFAEIVREMNFNPEKDNASFC  278 (286)
Q Consensus       242 -----~~~~~vSa~~~~--------gv~~l~~~i~~~i~~~~~~~~~~~~  278 (286)
                           ++++++||++|.        ++.++++.+.+.++......+.+++
T Consensus       163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r  212 (394)
T PRK12736        163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERDTDKPFL  212 (394)
T ss_pred             CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCCCCCCeE
Confidence                 589999999983        6889999999888755444455554

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.76  E-value=1.2e-17  Score=154.88  Aligned_cols=173  Identities=16%  Similarity=0.111  Sum_probs=107.3

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCcc----CCCccceEEE--E------------EE----EC--C----eEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKY----DPTIEDFYRK--E------------IE----VD--K----APCV  153 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~----~~t~~~~~~~--~------------~~----~~--~----~~~~  153 (286)
                      .+.++|+++|+.++|||||+.+|.+.......    .+.+.+....  .            +.    .+  +    ....
T Consensus         7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (411)
T PRK04000          7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR   86 (411)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence            35699999999999999999999653111110    1111110000  0            00    00  1    1245


Q ss_pred             EEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC-CHH
Q psy10504        154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREV-PTL  231 (286)
Q Consensus       154 l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~  231 (286)
                      +++||||||++|..........+|++++|+|++++. ..+.... +..+.. .  ...|+++|+||+|+.+..... ...
T Consensus        87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~-~--~i~~iiVVlNK~Dl~~~~~~~~~~~  162 (411)
T PRK04000         87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDI-I--GIKNIVIVQNKIDLVSKERALENYE  162 (411)
T ss_pred             EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHH-c--CCCcEEEEEEeeccccchhHHHHHH
Confidence            899999999988876666667789999999999754 2222222 222222 1  124789999999997322210 112


Q ss_pred             HHHHHHHh---cCCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504        232 DGQALAQS---WGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC  278 (286)
Q Consensus       232 ~~~~~~~~---~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~~  278 (286)
                      +...+.+.   .+.+++++||++|.|+++++++|.+.++......+.+++
T Consensus       163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~~~~~~r  212 (411)
T PRK04000        163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTPERDLDKPPR  212 (411)
T ss_pred             HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCCCCCCCce
Confidence            22333322   147899999999999999999999988655444444543

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.76  E-value=3.8e-17  Score=140.51  Aligned_cols=152  Identities=21%  Similarity=0.223  Sum_probs=106.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch-------hhhhhcccCcc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA-------SMRDLYIKNGQ  177 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~-------~~~~~~~~~~d  177 (286)
                      +|+++|.+|+|||||+++|.+... ...++.++.+.....+.+++..  +++|||||+.+..       .....+++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~--i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAK--IQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeE--EEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            689999999999999999998653 4556666666666777777765  8999999975432       12345789999


Q ss_pred             EEEEEEECCCcc-cHHHHHHHHH-----------------------------------------HHHHH-----------
Q psy10504        178 GFVVVYSLTNHH-TFQDIKQMKE-----------------------------------------LITRV-----------  204 (286)
Q Consensus       178 ~vilv~d~~~~~-s~~~~~~~~~-----------------------------------------~i~~~-----------  204 (286)
                      ++++|+|++++. ..+.+...+.                                         .+..+           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998754 2222222111                                         00000           


Q ss_pred             ------------hCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        205 ------------KGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       205 ------------~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                                  .....+|+++|+||+|+.      ...+...++.  ..+++++||+++.|++++|+.+.+.+.
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~------~~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L~  226 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLI------SIEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKLG  226 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCC------CHHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence                        011246999999999986      1233333433  246899999999999999999998663

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.76  E-value=3.9e-17  Score=140.71  Aligned_cols=110  Identities=17%  Similarity=0.204  Sum_probs=78.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCC--------Ccc-----------CCCccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFM--------EKY-----------DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA  166 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~--------~~~-----------~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~  166 (286)
                      +|+++|++|+|||||+++|+...-.        ...           .+.+.......+..++  .++.+|||||+.+|.
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~   78 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI   78 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence            4899999999999999999863110        000           0000111223334444  458999999999999


Q ss_pred             hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      ..+..+++.+|++++|+|++++...+ ...++..+..    .++|+++++||+|+.
T Consensus        79 ~~~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~----~~~P~iivvNK~D~~  129 (237)
T cd04168          79 AEVERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK----LNIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH----cCCCEEEEEECcccc
Confidence            98999999999999999999876443 3344444443    278999999999986

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.75  E-value=7.5e-18  Score=152.19  Aligned_cols=166  Identities=19%  Similarity=0.218  Sum_probs=129.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC--cCC--------------CccCCCcc--ceEEEEEEE-CCeEEEEEEEeCCCcccc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG--CFM--------------EKYDPTIE--DFYRKEIEV-DKAPCVLEILDTAGTEQF  165 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~--~~~--------------~~~~~t~~--~~~~~~~~~-~~~~~~l~l~DtpG~~~~  165 (286)
                      -+..|+.|-++|||||.+|++..  .+.              +.+.+-+.  +...-.+.. +|..+.++++|||||-+|
T Consensus        10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF   89 (603)
T COG0481          10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   89 (603)
T ss_pred             cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence            45789999999999999999862  111              11222222  222233333 457889999999999999


Q ss_pred             hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC---C
Q psy10504        166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG---C  242 (286)
Q Consensus       166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~  242 (286)
                      ..-..+.+..|.++++|+|++.+...+.+...+..+..     +.-++-|+||+|++.++.+   ...+++....|   .
T Consensus        90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-----~LeIiPViNKIDLP~Adpe---rvk~eIe~~iGid~~  161 (603)
T COG0481          90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPAADPE---RVKQEIEDIIGIDAS  161 (603)
T ss_pred             EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-----CcEEEEeeecccCCCCCHH---HHHHHHHHHhCCCcc
Confidence            98888899999999999999999999999998888887     8899999999999855443   33344455555   4


Q ss_pred             CEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504        243 PFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC  278 (286)
Q Consensus       243 ~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~~  278 (286)
                      ..+.+|||+|.|++++++.|++.++..+...+.+.+
T Consensus       162 dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pLk  197 (603)
T COG0481         162 DAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPLK  197 (603)
T ss_pred             hheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcce
Confidence            578999999999999999999999998877777754

>KOG0074|consensus

Probab=99.75  E-value=5.3e-18  Score=129.80  Aligned_cols=159  Identities=23%  Similarity=0.302  Sum_probs=124.4

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      .+.++++|+++|..++|||||+..|.+... ....+|. .+..+.+..++. +++++||.+|+...+..|..||.+.|++
T Consensus        13 ~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~-GFn~k~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~l   89 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTN-GFNTKKVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENVDGL   89 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccC-CcceEEEeecCc-EEEEEEecCCccccchhhhhhhhccceE
Confidence            346899999999999999999999987533 3333443 344556666553 5699999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc--------CCCEEEEeCCC
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW--------GCPFIEASAKN  251 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~vSa~~  251 (286)
                      |+|+|.+|...++++..-+.++..-.....+|+++..||.|+.-...      .+..+...        .+.+.+|||.+
T Consensus        90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~------~eeia~klnl~~lrdRswhIq~csals  163 (185)
T KOG0074|consen   90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK------VEEIALKLNLAGLRDRSWHIQECSALS  163 (185)
T ss_pred             EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc------hHHHHHhcchhhhhhceEEeeeCcccc
Confidence            99999999999999888777776655556899999999999862222      22222222        25678999999


Q ss_pred             CCcHHHHHHHHHHHhh
Q psy10504        252 KTNVNEMFAEIVREMN  267 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i~  267 (286)
                      ++|+..-.+|+.....
T Consensus       164 ~eg~~dg~~wv~sn~~  179 (185)
T KOG0074|consen  164 LEGSTDGSDWVQSNPE  179 (185)
T ss_pred             ccCccCcchhhhcCCC
Confidence            9999999999987654

>KOG0072|consensus

Probab=99.75  E-value=1.9e-18  Score=132.58  Aligned_cols=162  Identities=17%  Similarity=0.254  Sum_probs=120.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +..++.++|..|+|||+++-++.-+..+... ||++ +...++.+.+.+  +++||..|+...+..|+.|+.++|++|+|
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvttk-Ptig-fnve~v~yKNLk--~~vwdLggqtSirPyWRcYy~dt~avIyV   92 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTTK-PTIG-FNVETVPYKNLK--FQVWDLGGQTSIRPYWRCYYADTDAVIYV   92 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccccC-CCCC-cCcccccccccc--ceeeEccCcccccHHHHHHhcccceEEEE
Confidence            6789999999999999998888776665443 3332 223344445555  89999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHH---HHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL---DGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      +|.+|..........+..+......++..+++++||.|.....-.....   ..+.+.+. -+.++++||.+|+|+++..
T Consensus        93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r-~~~Iv~tSA~kg~Gld~~~  171 (182)
T KOG0072|consen   93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDR-IWQIVKTSAVKGEGLDPAM  171 (182)
T ss_pred             EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhh-eeEEEeeccccccCCcHHH
Confidence            9999988777666655555544455677889999999986322111111   11111111 2779999999999999999


Q ss_pred             HHHHHHhhcC
Q psy10504        260 AEIVREMNFN  269 (286)
Q Consensus       260 ~~i~~~i~~~  269 (286)
                      +|+.+.++..
T Consensus       172 DWL~~~l~~~  181 (182)
T KOG0072|consen  172 DWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHhcc
Confidence            9999988753

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.75  E-value=4.2e-17  Score=138.86  Aligned_cols=158  Identities=16%  Similarity=0.231  Sum_probs=102.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc--CCCccCCC---------------ccceEEEEEEEC--------CeEEEEEEEeCC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGC--FMEKYDPT---------------IEDFYRKEIEVD--------KAPCVLEILDTA  160 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t---------------~~~~~~~~~~~~--------~~~~~l~l~Dtp  160 (286)
                      +|+++|+.++|||||+++|+...  ......++               +.......+.+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            68999999999999999998632  11111000               001111122232        346779999999


Q ss_pred             CcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHH----HH
Q psy10504        161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQ----AL  236 (286)
Q Consensus       161 G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~----~~  236 (286)
                      ||++|......+++.+|++++|+|+.++...+....+.....     .++|+++|+||+|+...+...+..+..    .+
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~-----~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~~i  156 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK-----ERVKPVLVINKIDRLILELKLSPEEAYQRLARI  156 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECCCcchhhhcCCHHHHHHHHHHH
Confidence            999999999999999999999999998876655333332222     268999999999986333333322211    11


Q ss_pred             HHh-------c-------------C-CC----EEEEeCCCCC--------cHHHHHHHHHHHhhc
Q psy10504        237 AQS-------W-------------G-CP----FIEASAKNKT--------NVNEMFAEIVREMNF  268 (286)
Q Consensus       237 ~~~-------~-------------~-~~----~~~vSa~~~~--------gv~~l~~~i~~~i~~  268 (286)
                      .++       +             . .|    +.+.||+.|.        .+..+|+.|++.++.
T Consensus       157 i~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~~~~~~~~~~~~~  221 (222)
T cd01885         157 IEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIYAVLEMVVKHLPS  221 (222)
T ss_pred             HHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccccccchHHHHHHHHhhCCC
Confidence            111       1             1 13    7788888774        566778888777664

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.75  E-value=2.3e-17  Score=152.43  Aligned_cols=170  Identities=16%  Similarity=0.190  Sum_probs=106.3

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcC------------C-----CccCCCccceEEEEEEECCeEEEEEEEeCCCccc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCF------------M-----EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ  164 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~------------~-----~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~  164 (286)
                      .+.++|+++|+.++|||||+++|.+...            .     +...+.+.+..  ...+......+.|||||||++
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~--~~~~~~~~~~~~liDtpGh~~   87 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTA--HVEYETENRHYAHVDCPGHAD   87 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeE--EEEEcCCCEEEEEEECCchHH
Confidence            4679999999999999999999974200            0     01122222332  233434444589999999999


Q ss_pred             chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEE-EEEeCCCCCCCCCCC--CHHHHHHHHHhcC
Q psy10504        165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL-LVANKLDLASHQREV--PTLDGQALAQSWG  241 (286)
Q Consensus       165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-vv~nK~Dl~~~~~~~--~~~~~~~~~~~~~  241 (286)
                      |.......+..+|++++|+|++++...+.... +..+..    .++|.+ +++||+|+.+.....  ...+...+.+.++
T Consensus        88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~-l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        88 YVKNMITGAAQMDGAILVVSATDGPMPQTREH-ILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHH-HHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            98777777788999999999998644333322 222222    167755 689999987322111  1123444555554


Q ss_pred             -----CCEEEEeCCCCC--------cHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504        242 -----CPFIEASAKNKT--------NVNEMFAEIVREMNFNPEKDNASFC  278 (286)
Q Consensus       242 -----~~~~~vSa~~~~--------gv~~l~~~i~~~i~~~~~~~~~~~~  278 (286)
                           ++++++||++|.        ++.++++.|.+.++......+.+++
T Consensus       163 ~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r  212 (394)
T TIGR00485       163 FPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFL  212 (394)
T ss_pred             CCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeE
Confidence                 789999999875        3455666665544433333344443

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.75  E-value=3.7e-17  Score=151.06  Aligned_cols=170  Identities=17%  Similarity=0.154  Sum_probs=109.6

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcC-------C----------CccCCCccceEEEEEEECCeEEEEEEEeCCCccc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCF-------M----------EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ  164 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~-------~----------~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~  164 (286)
                      .+.++|+++|++++|||||+++|+....       .          +...+.+.+.....+..++  .++.|+|||||++
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~--~~i~~iDtPGh~~   87 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETAN--RHYAHVDCPGHAD   87 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCC--cEEEEEECCCHHH
Confidence            3569999999999999999999986210       0          0011122222222232333  3488999999998


Q ss_pred             chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEE-EEEeCCCCCCCCCC--CCHHHHHHHHHhcC
Q psy10504        165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL-LVANKLDLASHQRE--VPTLDGQALAQSWG  241 (286)
Q Consensus       165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-vv~nK~Dl~~~~~~--~~~~~~~~~~~~~~  241 (286)
                      |.......+..+|++++|+|+.++...+.. ..+..+..    .++|.+ +++||+|+.+....  ....+...+.+.++
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~-e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~  162 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchhHH-HHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence            887777888899999999999886433332 22222222    267865 57999999732111  11123444444443


Q ss_pred             -----CCEEEEeCCCCC----------cHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504        242 -----CPFIEASAKNKT----------NVNEMFAEIVREMNFNPEKDNASFC  278 (286)
Q Consensus       242 -----~~~~~vSa~~~~----------gv~~l~~~i~~~i~~~~~~~~~~~~  278 (286)
                           ++++++||++|.          ++.++++.|...++......+.+++
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r  214 (396)
T PRK12735        163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFL  214 (396)
T ss_pred             CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeE
Confidence                 679999999984          7889999998877644444445554

>KOG0096|consensus

Probab=99.75  E-value=5.6e-18  Score=135.94  Aligned_cols=166  Identities=25%  Similarity=0.468  Sum_probs=138.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceE-EEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFY-RKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+|++++|+.|.||||++.+...+.|...+.+|++-.. ...+..+.+.+.|..|||+|++.+..++.-|+-....+++
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii   88 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII   88 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence            579999999999999999999999999999999987333 3333444446889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      +||++..-++.++..|...+.+..  .++||++++||.|...  +. ...+.-.+-+..++.++++||+.+.|...-|-|
T Consensus        89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~--r~-~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~  163 (216)
T KOG0096|consen   89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKA--RK-VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLW  163 (216)
T ss_pred             EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccc--cc-cccccceeeecccceeEEeecccccccccchHH
Confidence            999999999999999999998854  4799999999999862  22 122233344556788999999999999999999


Q ss_pred             HHHHhhcCCCCc
Q psy10504        262 IVREMNFNPEKD  273 (286)
Q Consensus       262 i~~~i~~~~~~~  273 (286)
                      +++++...+..+
T Consensus       164 LarKl~G~p~Le  175 (216)
T KOG0096|consen  164 LARKLTGDPSLE  175 (216)
T ss_pred             HhhhhcCCCCeE
Confidence            999988777543

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.74  E-value=7.6e-17  Score=132.09  Aligned_cols=159  Identities=19%  Similarity=0.230  Sum_probs=108.8

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEE-EEECCeEEEEEEEeCCC----------cccchhh
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKE-IEVDKAPCVLEILDTAG----------TEQFASM  168 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~l~DtpG----------~~~~~~~  168 (286)
                      ++...+.|+++|.+|||||||+|+|++..-......|.+...... +.+++.   +.++|.||          .+.+..+
T Consensus        20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~   96 (200)
T COG0218          20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL   96 (200)
T ss_pred             CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence            344667999999999999999999999775444444444333333 444443   67899999          4456666


Q ss_pred             hhhcccC---ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc----C
Q psy10504        169 RDLYIKN---GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW----G  241 (286)
Q Consensus       169 ~~~~~~~---~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~  241 (286)
                      ...|++.   ..++++++|+..+-...+. ++++.+..    .++|++|++||+|+... .+.. ......++..    .
T Consensus        97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~----~~i~~~vv~tK~DKi~~-~~~~-k~l~~v~~~l~~~~~  169 (200)
T COG0218          97 IEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE----LGIPVIVVLTKADKLKK-SERN-KQLNKVAEELKKPPP  169 (200)
T ss_pred             HHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEccccCCh-hHHH-HHHHHHHHHhcCCCC
Confidence            6677754   5789999999987554443 33333333    38999999999999732 2211 1122233222    2


Q ss_pred             CC--EEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        242 CP--FIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       242 ~~--~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      ..  ++.+|+.++.|++++.+.|.+.+.+
T Consensus       170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         170 DDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             ccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            22  8899999999999999999988765

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.74  E-value=6.8e-17  Score=130.52  Aligned_cols=153  Identities=18%  Similarity=0.229  Sum_probs=96.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceE-EEEEEECCeEEEEEEEeCCCccc----------chhhhhhccc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFY-RKEIEVDKAPCVLEILDTAGTEQ----------FASMRDLYIK  174 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~DtpG~~~----------~~~~~~~~~~  174 (286)
                      +|+++|++|+|||||++++.++.+.....++.+... ...+..++   .+.+|||||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996555554444433222 22233333   488999999543          3334444443


Q ss_pred             ---CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC-CHHHHHHHHH--hcCCCEEEEe
Q psy10504        175 ---NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREV-PTLDGQALAQ--SWGCPFIEAS  248 (286)
Q Consensus       175 ---~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~--~~~~~~~~vS  248 (286)
                         ..+++++++|.++..+..... ....+..    .+.|+++++||+|+....... .........+  ....+++++|
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~-~~~~l~~----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S  152 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLE-MLDWLEE----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS  152 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHH-HHHHHHH----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence               457899999998764332221 1222222    157999999999986222111 1111111121  3347899999


Q ss_pred             CCCCCcHHHHHHHHHHHh
Q psy10504        249 AKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       249 a~~~~gv~~l~~~i~~~i  266 (286)
                      |+++.|+++++++|.+.+
T Consensus       153 a~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         153 SLKGQGIDELRALIEKWL  170 (170)
T ss_pred             cCCCCCHHHHHHHHHHhC
Confidence            999999999999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.74  E-value=1.1e-17  Score=142.57  Aligned_cols=145  Identities=21%  Similarity=0.174  Sum_probs=92.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC--cCC------------------------------CccCCCccceEEEEEEECCeEEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG--CFM------------------------------EKYDPTIEDFYRKEIEVDKAPCV  153 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~--~~~------------------------------~~~~~t~~~~~~~~~~~~~~~~~  153 (286)
                      +|+++|++++|||||+.+|+..  ...                              +...+++.+.....+...+..  
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~--   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYR--   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeE--
Confidence            4899999999999999999641  110                              011222223344455555544  


Q ss_pred             EEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc-------cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-
Q psy10504        154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH-------TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ-  225 (286)
Q Consensus       154 l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~-------s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-  225 (286)
                      +.+|||||+.+|.......+..+|++++|+|++++.       ..+....+ .....   ....|+++++||+|+.... 
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~iiivvNK~Dl~~~~~  154 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART---LGVKQLIVAVNKMDDVTVNW  154 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH---cCCCeEEEEEEccccccccc
Confidence            899999999888877777788899999999999852       11222222 22222   1236899999999997321 


Q ss_pred             -CC---CCHHHHHHHHHhcC-----CCEEEEeCCCCCcHH
Q psy10504        226 -RE---VPTLDGQALAQSWG-----CPFIEASAKNKTNVN  256 (286)
Q Consensus       226 -~~---~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~  256 (286)
                       +.   ....+...+.+..+     ++++++||++|.|++
T Consensus       155 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         155 SEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence             10   00112222233333     679999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.73  E-value=1.6e-16  Score=135.66  Aligned_cols=152  Identities=17%  Similarity=0.152  Sum_probs=96.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCC---------------cc---------ceE---------------EEEEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPT---------------IE---------DFY---------------RKEIE  146 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t---------------~~---------~~~---------------~~~~~  146 (286)
                      ||+++|+.++|||||+++|..+.+.......               +.         +..               ...+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            5899999999999999999976554321100               00         000               01111


Q ss_pred             ECCeEEEEEEEeCCCcccchhhhhhccc--CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC
Q psy10504        147 VDKAPCVLEILDTAGTEQFASMRDLYIK--NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH  224 (286)
Q Consensus       147 ~~~~~~~l~l~DtpG~~~~~~~~~~~~~--~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~  224 (286)
                      ..+  ..++++|||||++|.......+.  .+|++++|+|++.+..-++. .++..+..    .++|+++|+||+|+.+.
T Consensus        81 ~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~-~~l~~l~~----~~ip~ivvvNK~D~~~~  153 (224)
T cd04165          81 KSS--KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTK-EHLGLALA----LNIPVFVVVTKIDLAPA  153 (224)
T ss_pred             eCC--cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCEEEEEECccccCH
Confidence            222  34899999999998765555554  68999999999876543332 23333333    27899999999998622


Q ss_pred             CCC-CCHHHHHHHHH--------------------------hcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504        225 QRE-VPTLDGQALAQ--------------------------SWGCPFIEASAKNKTNVNEMFAEIVR  264 (286)
Q Consensus       225 ~~~-~~~~~~~~~~~--------------------------~~~~~~~~vSa~~~~gv~~l~~~i~~  264 (286)
                      .+. ....+.....+                          ...+|++.+||.+|+|++++++.|..
T Consensus       154 ~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         154 NILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            111 11111111111                          01248999999999999999887643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>CHL00071 tufA elongation factor Tu

Probab=99.72  E-value=1.3e-16  Score=148.07  Aligned_cols=170  Identities=16%  Similarity=0.151  Sum_probs=106.7

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCC--C---------------ccCCCccceEEEEEEECCeEEEEEEEeCCCccc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFM--E---------------KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ  164 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~--~---------------~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~  164 (286)
                      ...++|+++|++++|||||+++|+...-.  .               ...+.+.+.....+..++  .++.|+|||||.+
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~~~~iDtPGh~~   87 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN--RHYAHVDCPGHAD   87 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC--eEEEEEECCChHH
Confidence            35699999999999999999999863110  0               011111122222233333  4488999999998


Q ss_pred             chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCCC--CHHHHHHHHHhcC
Q psy10504        165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQREV--PTLDGQALAQSWG  241 (286)
Q Consensus       165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~  241 (286)
                      |.......+..+|++++|+|++++..-+... .+..+..    .++| +|+++||+|+.+.....  ...+...+.+..+
T Consensus        88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~-~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~  162 (409)
T CHL00071         88 YVKNMITGAAQMDGAILVVSAADGPMPQTKE-HILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD  162 (409)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCcHHHHH-HHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            8877777888999999999998765433322 2222322    2678 77899999997322111  1123333444433


Q ss_pred             -----CCEEEEeCCCCCc------------------HHHHHHHHHHHhhcCCCCcCCCce
Q psy10504        242 -----CPFIEASAKNKTN------------------VNEMFAEIVREMNFNPEKDNASFC  278 (286)
Q Consensus       242 -----~~~~~vSa~~~~g------------------v~~l~~~i~~~i~~~~~~~~~~~~  278 (286)
                           ++++++||.+|.+                  +..+++.|...++......+.+++
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r  222 (409)
T CHL00071        163 FPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFL  222 (409)
T ss_pred             CCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEE
Confidence                 6899999999863                  466777776655433233344443

>cd04167 Snu114p Snu114p subfamily

Probab=99.72  E-value=2.1e-16  Score=134.14  Aligned_cols=157  Identities=19%  Similarity=0.216  Sum_probs=101.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCcc-----------CCC---------ccceEEEEEEE---CCeEEEEEEEeCCCc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKY-----------DPT---------IEDFYRKEIEV---DKAPCVLEILDTAGT  162 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~-----------~~t---------~~~~~~~~~~~---~~~~~~l~l~DtpG~  162 (286)
                      +|+++|++|+|||||+++|+........           ..+         +.......+.+   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            5899999999999999999875432210           000         00111111212   355677999999999


Q ss_pred             ccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCH-----------H
Q psy10504        163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPT-----------L  231 (286)
Q Consensus       163 ~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~-----------~  231 (286)
                      .+|......++..+|++++|+|+.+..+... ..++.....    .++|+++|+||+|+...+...+.           .
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~  156 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIID  156 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHH
Confidence            9998888899999999999999998766543 233333322    26899999999998521111111           1


Q ss_pred             HHHHHHHhcC-------CC----EEEEeCCCCCcHH--------HHHHHHHHHhh
Q psy10504        232 DGQALAQSWG-------CP----FIEASAKNKTNVN--------EMFAEIVREMN  267 (286)
Q Consensus       232 ~~~~~~~~~~-------~~----~~~vSa~~~~gv~--------~l~~~i~~~i~  267 (286)
                      +...++...+       .|    +++.||+.+.++.        ++++.|.+.++
T Consensus       157 ~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~  211 (213)
T cd04167         157 EVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP  211 (213)
T ss_pred             HHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence            1111222222       22    7789999887665        77777777654

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.71  E-value=3.4e-16  Score=146.22  Aligned_cols=171  Identities=19%  Similarity=0.159  Sum_probs=107.9

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcC------cC-----------CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSG------CF-----------MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~------~~-----------~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      ....++|+++||+++|||||+++|.+.      ..           .+...+.+.+.....+..+  ..++.|+|||||.
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~~iDtPGh~  135 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA--KRHYAHVDCPGHA  135 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC--CeEEEEEECCCcc
Confidence            346799999999999999999999731      00           0111223333333333333  3458899999999


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCCCC--HHHHHHHHHhc
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQREVP--TLDGQALAQSW  240 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~~~--~~~~~~~~~~~  240 (286)
                      +|.......+..+|++++|+|++++..-++ ...+..+..    .++| +|+++||+|+.+......  ..+...+....
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~  210 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFY  210 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHh
Confidence            987777677788999999999988654333 222222332    2688 578899999973211111  11222222222


Q ss_pred             -----CCCEEEEeCC---CCCc-------HHHHHHHHHHHhhcCCCCcCCCce
Q psy10504        241 -----GCPFIEASAK---NKTN-------VNEMFAEIVREMNFNPEKDNASFC  278 (286)
Q Consensus       241 -----~~~~~~vSa~---~~~g-------v~~l~~~i~~~i~~~~~~~~~~~~  278 (286)
                           .++++++||.   +|.|       +.+|++.+.+.++......+.+++
T Consensus       211 ~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr  263 (447)
T PLN03127        211 KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFL  263 (447)
T ss_pred             CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceE
Confidence                 2678888876   4555       788999998887655444455554

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.71  E-value=2e-16  Score=149.69  Aligned_cols=158  Identities=18%  Similarity=0.288  Sum_probs=123.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCc-CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh------hhhhcc--
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGC-FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS------MRDLYI--  173 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~------~~~~~~--  173 (286)
                      +..+|+++|.||+|||||+|++++.. .+.++++.+-+..+..+...+.+  ++++|.||......      ..+.|+  
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            45679999999999999999999954 47888888888889999999988  88999999654333      223333  


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCC
Q psy10504        174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT  253 (286)
Q Consensus       174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~  253 (286)
                      ...|+++-|+|+++.+  .++.-.++.+.-     ++|++++.|++|..  ++.--..+.+.+.+..|+|++++||++|.
T Consensus        80 ~~~D~ivnVvDAtnLe--RnLyltlQLlE~-----g~p~ilaLNm~D~A--~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~  150 (653)
T COG0370          80 GKPDLIVNVVDATNLE--RNLYLTLQLLEL-----GIPMILALNMIDEA--KKRGIRIDIEKLSKLLGVPVVPTVAKRGE  150 (653)
T ss_pred             CCCCEEEEEcccchHH--HHHHHHHHHHHc-----CCCeEEEeccHhhH--HhcCCcccHHHHHHHhCCCEEEEEeecCC
Confidence            3469999999999864  223333333333     88999999999986  33334556788999999999999999999


Q ss_pred             cHHHHHHHHHHHhhcCCC
Q psy10504        254 NVNEMFAEIVREMNFNPE  271 (286)
Q Consensus       254 gv~~l~~~i~~~i~~~~~  271 (286)
                      |++++.+.+.+....+..
T Consensus       151 G~~~l~~~i~~~~~~~~~  168 (653)
T COG0370         151 GLEELKRAIIELAESKTT  168 (653)
T ss_pred             CHHHHHHHHHHhcccccc
Confidence            999999999987766553

>PRK00049 elongation factor Tu; Reviewed

Probab=99.71  E-value=3.5e-16  Score=144.51  Aligned_cols=170  Identities=18%  Similarity=0.167  Sum_probs=109.2

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCC-----------------CccCCCccceEEEEEEECCeEEEEEEEeCCCccc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFM-----------------EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ  164 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~  164 (286)
                      ...++|+++|++++|||||+++|+.....                 +...+.+.+.....+..++  ..+.|+|||||.+
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~--~~i~~iDtPG~~~   87 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEK--RHYAHVDCPGHAD   87 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCC--eEEEEEECCCHHH
Confidence            46799999999999999999999863110                 0012222222222333333  4488999999998


Q ss_pred             chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEE-EEEeCCCCCCCCCCC--CHHHHHHHHHhc-
Q psy10504        165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL-LVANKLDLASHQREV--PTLDGQALAQSW-  240 (286)
Q Consensus       165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-vv~nK~Dl~~~~~~~--~~~~~~~~~~~~-  240 (286)
                      |.......+..+|++++|+|++++..-+.. ..+..+..    .++|.+ +++||+|+.+.....  ...+...+.... 
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt~-~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~  162 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchHHH-HHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence            887777788999999999999886443332 22333332    268976 589999997321111  111233333332 


Q ss_pred             ----CCCEEEEeCCCCC----------cHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504        241 ----GCPFIEASAKNKT----------NVNEMFAEIVREMNFNPEKDNASFC  278 (286)
Q Consensus       241 ----~~~~~~vSa~~~~----------gv~~l~~~i~~~i~~~~~~~~~~~~  278 (286)
                          .++++++||+++.          |+..+++.|...++......+.+++
T Consensus       163 ~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r  214 (396)
T PRK00049        163 FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFL  214 (396)
T ss_pred             CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeE
Confidence                3689999999875          5778888888876544444445554

>KOG1423|consensus

Probab=99.71  E-value=4.1e-16  Score=134.24  Aligned_cols=168  Identities=20%  Similarity=0.198  Sum_probs=113.1

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCC--ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh-----------
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFME--KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS-----------  167 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~-----------  167 (286)
                      ..+.+.|+++|.||+|||||.|.+.+.++..  ....|++......+.-+..+  +.|+||||.-.-..           
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQ--lvf~DTPGlvs~~~~r~~~l~~s~l  146 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQ--LVFYDTPGLVSKKMHRRHHLMMSVL  146 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceE--EEEecCCcccccchhhhHHHHHHhh
Confidence            4577999999999999999999999987754  34455555555555555555  89999999321111           


Q ss_pred             -hhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC------------CCCHHHHH
Q psy10504        168 -MRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR------------EVPTLDGQ  234 (286)
Q Consensus       168 -~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~------------~~~~~~~~  234 (286)
                       ..+..+..||.+++++|+++....-. ...+..+..+.   ++|-++|.||.|.....+            .......+
T Consensus       147 q~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys---~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~  222 (379)
T KOG1423|consen  147 QNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS---KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE  222 (379)
T ss_pred             hCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh---cCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence             12345677999999999997432222 22344555443   789999999999762211            11111111


Q ss_pred             HHHHhcCC----------------CEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcC
Q psy10504        235 ALAQSWGC----------------PFIEASAKNKTNVNEMFAEIVREMNFNPEKDN  274 (286)
Q Consensus       235 ~~~~~~~~----------------~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~  274 (286)
                      -..+....                .+|.+||++|+|++++-++|+..++..+-+..
T Consensus       223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~  278 (379)
T KOG1423|consen  223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYP  278 (379)
T ss_pred             HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCC
Confidence            11111112                38999999999999999999999987775544

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.70  E-value=2.5e-16  Score=148.33  Aligned_cols=151  Identities=21%  Similarity=0.166  Sum_probs=94.9

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcC--cCCCcc----------CCCc----------------------cceEEEEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSG--CFMEKY----------DPTI----------------------EDFYRKEIEV  147 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~----------~~t~----------------------~~~~~~~~~~  147 (286)
                      ...++|+++|++++|||||+.+|+..  .+....          .+++                      .+.....+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            45699999999999999999999863  111100          1111                      1222222333


Q ss_pred             CCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC
Q psy10504        148 DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE  227 (286)
Q Consensus       148 ~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~  227 (286)
                      ++  .++.|+|||||++|.......+..+|++++|+|++++..-+....+. .+.. ..  ..|+++++||+|+.+....
T Consensus       105 ~~--~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~-lg--~~~iIvvvNKiD~~~~~~~  178 (474)
T PRK05124        105 EK--RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATL-LG--IKHLVVAVNKMDLVDYSEE  178 (474)
T ss_pred             CC--cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHH-hC--CCceEEEEEeeccccchhH
Confidence            33  45889999999998776666689999999999998764332222221 1222 11  2478999999999732221


Q ss_pred             CCHH---HHHHHHHhc----CCCEEEEeCCCCCcHHHH
Q psy10504        228 VPTL---DGQALAQSW----GCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       228 ~~~~---~~~~~~~~~----~~~~~~vSa~~~~gv~~l  258 (286)
                      .-..   +...+.+..    ..+++++||++|+|++++
T Consensus       179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            1111   111222232    378999999999999764

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.70  E-value=2.2e-16  Score=146.35  Aligned_cols=147  Identities=24%  Similarity=0.224  Sum_probs=93.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC--cCCCcc----------CC----------------------CccceEEEEEEECCe
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG--CFMEKY----------DP----------------------TIEDFYRKEIEVDKA  150 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~----------~~----------------------t~~~~~~~~~~~~~~  150 (286)
                      ++|+++|++++|||||+.+|+..  ......          .+                      .+.+.....+..++.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            47999999999999999999752  111100          11                      111222233334443


Q ss_pred             EEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCC-
Q psy10504        151 PCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVP-  229 (286)
Q Consensus       151 ~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~-  229 (286)
                        ++.|+|||||++|.......+..+|++++|+|++++...+....+. .+.. ..  ..++++++||+|+.+.....- 
T Consensus        81 --~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~-~~--~~~iivviNK~D~~~~~~~~~~  154 (406)
T TIGR02034        81 --KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASL-LG--IRHVVLAVNKMDLVDYDEEVFE  154 (406)
T ss_pred             --EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHH-cC--CCcEEEEEEecccccchHHHHH
Confidence              5889999999999877777889999999999998865443333222 1222 11  236889999999973221110 


Q ss_pred             --HHHHHHHHHhcC---CCEEEEeCCCCCcHHH
Q psy10504        230 --TLDGQALAQSWG---CPFIEASAKNKTNVNE  257 (286)
Q Consensus       230 --~~~~~~~~~~~~---~~~~~vSa~~~~gv~~  257 (286)
                        ..+...+.+..+   ++++++||++|+|+++
T Consensus       155 ~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       155 NIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence              111222223333   5799999999999985

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.70  E-value=3e-16  Score=146.50  Aligned_cols=174  Identities=11%  Similarity=0.071  Sum_probs=109.1

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcC---CCccCCCcc-ceEEEEE---------------EECC------------
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCF---MEKYDPTIE-DFYRKEI---------------EVDK------------  149 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~---~~~~~~t~~-~~~~~~~---------------~~~~------------  149 (286)
                      ....++|+++||.++|||||+.+|.+...   ..+.....+ +......               ....            
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            34678999999999999999999997321   111100000 0000000               0000            


Q ss_pred             ----eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCc-ccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC
Q psy10504        150 ----APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH-HTFQDIKQMKELITRVKGSERVPILLVANKLDLASH  224 (286)
Q Consensus       150 ----~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~  224 (286)
                          ....+.|+|+|||++|.......+..+|++++|+|++++ ...+..+. +..+.. ..  -.|+++|+||+|+.+.
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~eh-l~i~~~-lg--i~~iIVvlNKiDlv~~  186 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEH-LAAVEI-MK--LKHIIILQNKIDLVKE  186 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHH-HHHHHH-cC--CCcEEEEEecccccCH
Confidence                013588999999999988888888999999999999975 23332222 222222 11  2368999999999732


Q ss_pred             CCC-CCHHHHHHHHHh---cCCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504        225 QRE-VPTLDGQALAQS---WGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC  278 (286)
Q Consensus       225 ~~~-~~~~~~~~~~~~---~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~~  278 (286)
                      ... ....+...+.+.   .+.+++++||++|+|++.|++.|.+.++......+.+++
T Consensus       187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~~~~p~r  244 (460)
T PTZ00327        187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIPKRDLTSPPR  244 (460)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCCCCCCCcE
Confidence            111 011122222222   257899999999999999999999888765444445544

>PLN03126 Elongation factor Tu; Provisional

Probab=99.70  E-value=4.2e-16  Score=146.41  Aligned_cols=146  Identities=18%  Similarity=0.162  Sum_probs=95.2

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCc------CCC-----------ccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGC------FME-----------KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~------~~~-----------~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      ....++|+++|++++|||||+++|+...      ...           ...+.+.+.....+..++.  .+.++|||||+
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~--~i~liDtPGh~  155 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENR--HYAHVDCPGHA  155 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCc--EEEEEECCCHH
Confidence            4467899999999999999999998521      111           0111111222223334444  48899999999


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCC--CCHHHHHHHHHhc
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQRE--VPTLDGQALAQSW  240 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~--~~~~~~~~~~~~~  240 (286)
                      +|.......+..+|++++|+|++++...+.... +..+..    .++| +++++||+|+.+.+..  ....+...+.+..
T Consensus       156 ~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~-~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~  230 (478)
T PLN03126        156 DYVKNMITGAAQMDGAILVVSGADGPMPQTKEH-ILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSY  230 (478)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHH-HHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhc
Confidence            998877888889999999999998754444332 233332    2778 7789999999732111  1111333333433


Q ss_pred             -----CCCEEEEeCCCCC
Q psy10504        241 -----GCPFIEASAKNKT  253 (286)
Q Consensus       241 -----~~~~~~vSa~~~~  253 (286)
                           .++++++||.+|.
T Consensus       231 g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        231 EFPGDDIPIISGSALLAL  248 (478)
T ss_pred             CCCcCcceEEEEEccccc
Confidence                 3689999999874

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.67  E-value=9e-16  Score=120.41  Aligned_cols=135  Identities=18%  Similarity=0.211  Sum_probs=92.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcc----cchhhhhhcccCccEEEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE----QFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~----~~~~~~~~~~~~~d~vil  181 (286)
                      ||+++|+.|+|||||+++|.+.......+..        +.+.     =.++||||.-    .|..-......+||.+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq~--------i~~~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l   69 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQA--------IEYY-----DNTIDTPGEYIENPRFYHALIVTAQDADVVLL   69 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCCcCccce--------eEec-----ccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence            7999999999999999999886442221111        1222     2359999942    233233334578999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCCCcHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~l~~  260 (286)
                      |.|++++.+.-.-     .+..   .-+.|+|=|+||+|+..+.  .+.+..+...+..|+ .+|++|+.+|+|+++|.+
T Consensus        70 l~dat~~~~~~pP-----~fa~---~f~~pvIGVITK~Dl~~~~--~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~  139 (143)
T PF10662_consen   70 LQDATEPRSVFPP-----GFAS---MFNKPVIGVITKIDLPSDD--ANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD  139 (143)
T ss_pred             EecCCCCCccCCc-----hhhc---ccCCCEEEEEECccCccch--hhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence            9999986532211     1111   1257999999999997322  234555666666674 579999999999999998


Q ss_pred             HHH
Q psy10504        261 EIV  263 (286)
Q Consensus       261 ~i~  263 (286)
                      +|-
T Consensus       140 ~L~  142 (143)
T PF10662_consen  140 YLE  142 (143)
T ss_pred             HHh
Confidence            874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>KOG4423|consensus

Probab=99.67  E-value=4.9e-18  Score=135.82  Aligned_cols=168  Identities=30%  Similarity=0.448  Sum_probs=138.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCe-EEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKA-PCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      .-+|+.|+|.-++|||+++.++....+...|..|++ ++..+.+..+.. .+++++||..||++|..|..-|++.+++.+
T Consensus        24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~  103 (229)
T KOG4423|consen   24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF  103 (229)
T ss_pred             hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence            447999999999999999999999999988888887 444455555543 356889999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHh---CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVK---GSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVN  256 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~  256 (286)
                      +|||++...+++....|.+.+-...   ....+|+++..||||...........+...+.++.| ..-+++|+|.+.+++
T Consensus       104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~  183 (229)
T KOG4423|consen  104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIP  183 (229)
T ss_pred             EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChh
Confidence            9999999999999999998886533   223578899999999873333333466778888888 468999999999999


Q ss_pred             HHHHHHHHHhhcCC
Q psy10504        257 EMFAEIVREMNFNP  270 (286)
Q Consensus       257 ~l~~~i~~~i~~~~  270 (286)
                      |.-+.+++.+.-+.
T Consensus       184 Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  184 EAQRELVEKILVND  197 (229)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999876443

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.66  E-value=1.1e-15  Score=143.01  Aligned_cols=149  Identities=16%  Similarity=0.179  Sum_probs=97.4

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCc--CCCc------------------------------cCCCccceEEEEEEECC
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGC--FMEK------------------------------YDPTIEDFYRKEIEVDK  149 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~  149 (286)
                      ..+++|+++||.++|||||+.+|+...  ....                              ..+.  ........+..
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGi--Ti~~~~~~~~~   82 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGI--TIDIALWKFET   82 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCc--eEEEEEEEecC
Confidence            356899999999999999999887511  1100                              0000  11112223344


Q ss_pred             eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHH-------HHHHHHHHHHHHhCCCCCc-EEEEEeCCCC
Q psy10504        150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQ-------DIKQMKELITRVKGSERVP-ILLVANKLDL  221 (286)
Q Consensus       150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~-------~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl  221 (286)
                      ....++++|||||++|......++..+|++|+|+|++++. ++       .....+.....    .++| +|+++||+|+
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~  157 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDA  157 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccC
Confidence            4556999999999999999999999999999999999742 21       22222222222    2664 7889999998


Q ss_pred             CCCCC-----CCCHHHHHHHHHhcC-----CCEEEEeCCCCCcHHH
Q psy10504        222 ASHQR-----EVPTLDGQALAQSWG-----CPFIEASAKNKTNVNE  257 (286)
Q Consensus       222 ~~~~~-----~~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~  257 (286)
                      .+...     .....+...+.+..+     ++++++||++|+|+.+
T Consensus       158 ~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        158 TTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            61110     011334555555555     6799999999999853

>cd04169 RF3 RF3 subfamily

Probab=99.66  E-value=3.6e-15  Score=130.65  Aligned_cols=133  Identities=18%  Similarity=0.231  Sum_probs=84.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC--cCCCc--------cCCCcc-----------ceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG--CFMEK--------YDPTIE-----------DFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~--~~~~~--------~~~t~~-----------~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      -+|+++|++|+|||||+++|+..  .....        ...++.           +.......+....+.+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            46999999999999999999852  11110        001111           1122223344444559999999999


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCC
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCP  243 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  243 (286)
                      +|......+++.+|++++|+|++++...+ ...++.....    .++|+++++||+|+.....   ......+...++.+
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~----~~~P~iivvNK~D~~~a~~---~~~~~~l~~~l~~~  154 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL----RGIPIITFINKLDREGRDP---LELLDEIEEELGID  154 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh----cCCCEEEEEECCccCCCCH---HHHHHHHHHHHCCC
Confidence            99887788899999999999998864332 2233333222    3789999999999863221   12233444555544


Q ss_pred             EE
Q psy10504        244 FI  245 (286)
Q Consensus       244 ~~  245 (286)
                      .+
T Consensus       155 ~~  156 (267)
T cd04169         155 CT  156 (267)
T ss_pred             ce
Confidence            33

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.65  E-value=1.2e-15  Score=133.87  Aligned_cols=111  Identities=17%  Similarity=0.171  Sum_probs=78.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhc--CcCCC-----------------ccCCCccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS--GCFME-----------------KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA  166 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~--~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~  166 (286)
                      +|+++|++|+|||||+++|+.  +....                 ...+.+.+.....+.+.+..  +.+|||||+.+|.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~--i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHR--INIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEE--EEEEECCCcHHHH
Confidence            489999999999999999974  11100                 11122223333445555554  8899999999998


Q ss_pred             hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                      ..+..+++.+|++++|+|+.++...+... .+..+..    .++|+++++||+|+.+
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t~~-~~~~~~~----~~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQTET-VWRQADR----YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECCCCCC
Confidence            88899999999999999998865444332 2333332    2789999999999873

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.65  E-value=2e-15  Score=141.14  Aligned_cols=150  Identities=19%  Similarity=0.185  Sum_probs=94.6

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhc--CcCCC------------------------------ccCCCccceEEEEEEECC
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVS--GCFME------------------------------KYDPTIEDFYRKEIEVDK  149 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~------------------------------~~~~t~~~~~~~~~~~~~  149 (286)
                      ...++|+++|+.++|||||+.+|+.  +....                              ...+.+.+.....  +..
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~--~~~   82 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWK--FET   82 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEE--Ecc
Confidence            3568999999999999999999975  21110                              0011111222222  333


Q ss_pred             eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCccc---H---HHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCC
Q psy10504        150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHT---F---QDIKQMKELITRVKGSERVP-ILLVANKLDLA  222 (286)
Q Consensus       150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~  222 (286)
                      ....+.|+|||||.+|.......+..+|++++|+|++++..   +   ......+..+..    .++| +|+++||+|..
T Consensus        83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~  158 (446)
T PTZ00141         83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDK  158 (446)
T ss_pred             CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccc
Confidence            44458999999999999888888999999999999987631   1   112222222222    2666 67899999954


Q ss_pred             CC--C-CC--CCHHHHHHHHHhcC-----CCEEEEeCCCCCcHHH
Q psy10504        223 SH--Q-RE--VPTLDGQALAQSWG-----CPFIEASAKNKTNVNE  257 (286)
Q Consensus       223 ~~--~-~~--~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~  257 (286)
                      ..  . ..  ....+...+....+     ++++++||.+|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            11  1 11  11122233333333     6799999999999964

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.65  E-value=5.5e-15  Score=140.55  Aligned_cols=115  Identities=19%  Similarity=0.291  Sum_probs=78.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc--CcCCC--c------cCCCcc-----------ceEEEEEEECCeEEEEEEEeCCC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS--GCFME--K------YDPTIE-----------DFYRKEIEVDKAPCVLEILDTAG  161 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~--~------~~~t~~-----------~~~~~~~~~~~~~~~l~l~DtpG  161 (286)
                      +.-+|+|+|++++|||||+++|+.  +....  .      ...+..           ........+....+.+++|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            456899999999999999999974  21100  0      000100           11122222333345589999999


Q ss_pred             cccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       162 ~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      |.+|......+++.+|++|+|+|++++...+ ...++.....    .++|+++++||+|+.
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~----~~iPiiv~iNK~D~~  144 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL----RDTPIFTFINKLDRD  144 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh----cCCCEEEEEECCccc
Confidence            9999987888899999999999999865333 2333333222    389999999999986

>KOG1489|consensus

Probab=99.64  E-value=2.5e-15  Score=130.05  Aligned_cols=155  Identities=23%  Similarity=0.261  Sum_probs=117.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh-------hhhcccCc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM-------RDLYIKNG  176 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~-------~~~~~~~~  176 (286)
                      ..|.++|-||+|||||++++...+. +..|+.|+-.....++.+++... +++-|.||..+-..+       .-+.+..|
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q-~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQ-ITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccce-eEeccCccccccccccCcccHHHHHHHHhh
Confidence            4578999999999999999998654 77888887766666666666553 899999996543332       12335679


Q ss_pred             cEEEEEEECCCc---ccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCC-EEEEeCCC
Q psy10504        177 QGFVVVYSLTNH---HTFQDIKQMKELITRVK-GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCP-FIEASAKN  251 (286)
Q Consensus       177 d~vilv~d~~~~---~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~  251 (286)
                      +.+++|+|++.+   ..++.+..+..++..+. ...+.|.++|+||+|+++++.    .....+++...-+ ++++||++
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~----~~l~~L~~~lq~~~V~pvsA~~  351 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK----NLLSSLAKRLQNPHVVPVSAKS  351 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH----HHHHHHHHHcCCCcEEEeeecc
Confidence            999999999998   77777777766666554 445789999999999962222    1235666666644 99999999


Q ss_pred             CCcHHHHHHHHHH
Q psy10504        252 KTNVNEMFAEIVR  264 (286)
Q Consensus       252 ~~gv~~l~~~i~~  264 (286)
                      ++|+.++++.+.+
T Consensus       352 ~egl~~ll~~lr~  364 (366)
T KOG1489|consen  352 GEGLEELLNGLRE  364 (366)
T ss_pred             ccchHHHHHHHhh
Confidence            9999999988765

>PRK13351 elongation factor G; Reviewed

Probab=99.64  E-value=1.1e-15  Score=150.54  Aligned_cols=114  Identities=18%  Similarity=0.200  Sum_probs=82.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC--------CC-----cc------CCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF--------ME-----KY------DPTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--------~~-----~~------~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      +..+|+++|+.|+|||||+++|+...-        ..     ++      .+.+.......+.+.+  +.+.+|||||+.
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~   84 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPGHI   84 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCCcH
Confidence            457999999999999999999985211        00     00      0011111122344444  458999999999


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                      +|...+..+++.+|++++|+|++++...+....|. .+..    .++|+++++||+|+..
T Consensus        85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~----~~~p~iiviNK~D~~~  139 (687)
T PRK13351         85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR----YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh----cCCCEEEEEECCCCCC
Confidence            99999999999999999999999987766554443 2222    2789999999999874

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.64  E-value=2.5e-15  Score=146.67  Aligned_cols=150  Identities=22%  Similarity=0.196  Sum_probs=95.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcC--cCCCc----------cCCCc----------------------cceEEEEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSG--CFMEK----------YDPTI----------------------EDFYRKEIEV  147 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~----------~~~t~----------------------~~~~~~~~~~  147 (286)
                      ...++|+++|++++|||||+++|+..  .....          ..+++                      .+.....+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            34588999999999999999999863  22211          12221                      1112223333


Q ss_pred             CCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC
Q psy10504        148 DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE  227 (286)
Q Consensus       148 ~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~  227 (286)
                      ++.  ++.|+|||||++|.......+..+|++++|+|++++..-+....+. .+...   ...|++|++||+|+.+....
T Consensus       102 ~~~--~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~-~~~~~---~~~~iivvvNK~D~~~~~~~  175 (632)
T PRK05506        102 PKR--KFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF-IASLL---GIRHVVLAVNKMDLVDYDQE  175 (632)
T ss_pred             CCc--eEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH-HHHHh---CCCeEEEEEEecccccchhH
Confidence            444  4789999999988776666788999999999998765333222222 22221   13578899999998631221


Q ss_pred             CCH---HHHHHHHHhcC---CCEEEEeCCCCCcHHH
Q psy10504        228 VPT---LDGQALAQSWG---CPFIEASAKNKTNVNE  257 (286)
Q Consensus       228 ~~~---~~~~~~~~~~~---~~~~~vSa~~~~gv~~  257 (286)
                      .-.   .+...+.+..+   .+++++||++|.|+++
T Consensus       176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            111   11222333444   4699999999999874

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.64  E-value=5.6e-15  Score=128.79  Aligned_cols=159  Identities=18%  Similarity=0.222  Sum_probs=115.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCccc-----chhhhhh---c
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ-----FASMRDL---Y  172 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~-----~~~~~~~---~  172 (286)
                      +..+.|+|.|.||||||||++++.+... .++|+.|+......++..++..  +|++||||.-+     .+.+-..   .
T Consensus       166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R--~QvIDTPGlLDRPl~ErN~IE~qAi~A  243 (346)
T COG1084         166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLR--IQVIDTPGLLDRPLEERNEIERQAILA  243 (346)
T ss_pred             CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCce--EEEecCCcccCCChHHhcHHHHHHHHH
Confidence            3567899999999999999999999655 7899999988888888888877  89999999432     1111111   1


Q ss_pred             c-cCccEEEEEEECCC--cccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-HHHhcCCCEEEEe
Q psy10504        173 I-KNGQGFVVVYSLTN--HHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA-LAQSWGCPFIEAS  248 (286)
Q Consensus       173 ~-~~~d~vilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~vS  248 (286)
                      + .-.++++++||.+.  +-+.+.-..++..+....   +.|+++|+||+|..+.+.   ..+... +...-+.....++
T Consensus       244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~---~~~~~~~~~~~~~~~~~~~~  317 (346)
T COG1084         244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEK---LEEIEASVLEEGGEEPLKIS  317 (346)
T ss_pred             HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhH---HHHHHHHHHhhcccccccee
Confidence            1 33689999999987  445666666777776643   489999999999872222   222232 3333334467899


Q ss_pred             CCCCCcHHHHHHHHHHHhhc
Q psy10504        249 AKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       249 a~~~~gv~~l~~~i~~~i~~  268 (286)
                      +..+.+++.+-+.+.....+
T Consensus       318 ~~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         318 ATKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             eeehhhHHHHHHHHHHHhhc
Confidence            99999999988888777543

>KOG0077|consensus

Probab=99.63  E-value=6.4e-16  Score=121.60  Aligned_cols=154  Identities=17%  Similarity=0.193  Sum_probs=118.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCC---CccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFM---EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      +.-|++++|..|+|||||++.|.+++..   +...||     +..+.+.+-.  ++.+|.+||..-+..|..|+..+|++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPT-----SE~l~Ig~m~--ftt~DLGGH~qArr~wkdyf~~v~~i   91 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT-----SEELSIGGMT--FTTFDLGGHLQARRVWKDYFPQVDAI   91 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccccccCCCcCCC-----hHHheecCce--EEEEccccHHHHHHHHHHHHhhhcee
Confidence            4468999999999999999999986553   333334     3345566666  89999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH---HhcC--------------C
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA---QSWG--------------C  242 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~--------------~  242 (286)
                      ++.+|+-|.+.+.+.+.-++.+........+|+++.+||+|.+.+..   +++.+...   ...+              .
T Consensus        92 v~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~s---e~~l~~~l~l~~~t~~~~~v~~~~~~~rp~  168 (193)
T KOG0077|consen   92 VYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAAS---EDELRFHLGLSNFTTGKGKVNLTDSNVRPL  168 (193)
T ss_pred             EeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCccc---HHHHHHHHHHHHHhcccccccccCCCCCeE
Confidence            99999999999999988877777665556899999999999985442   22222211   1111              2


Q ss_pred             CEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504        243 PFIEASAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       243 ~~~~vSa~~~~gv~~l~~~i~~~i  266 (286)
                      .++-||...+.|..+.|.|+.+.+
T Consensus       169 evfmcsi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  169 EVFMCSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             EEEEEEEEccCccceeeeehhhhc
Confidence            367889999999888888887654

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.62  E-value=7.2e-15  Score=123.26  Aligned_cols=158  Identities=15%  Similarity=0.160  Sum_probs=94.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccc----eEEEEEEECCeEEEEEEEeCCCcccchh-----hhhhccc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED----FYRKEIEVDKAPCVLEILDTAGTEQFAS-----MRDLYIK  174 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~l~l~DtpG~~~~~~-----~~~~~~~  174 (286)
                      ++||+++|++|+|||||+|++++.........+++.    .....+.... ...+.+|||||......     +....+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            378999999999999999999985543322111110    0011111111 22488999999754322     2233367


Q ss_pred             CccEEEEEEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC------CHHH-HHH----HH---Hh
Q psy10504        175 NGQGFVVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASHQREV------PTLD-GQA----LA---QS  239 (286)
Q Consensus       175 ~~d~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~------~~~~-~~~----~~---~~  239 (286)
                      .+|+++++.+.  +  +... ..++..+...    +.|+++|+||+|+.......      ...+ .+.    ..   ..
T Consensus        80 ~~d~~l~v~~~--~--~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~  151 (197)
T cd04104          80 EYDFFIIISST--R--FSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE  151 (197)
T ss_pred             CcCEEEEEeCC--C--CCHHHHHHHHHHHHh----CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence            78988887432  2  2222 3345555442    67999999999984211110      0111 111    11   12


Q ss_pred             cC---CCEEEEeCC--CCCcHHHHHHHHHHHhhcCC
Q psy10504        240 WG---CPFIEASAK--NKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       240 ~~---~~~~~vSa~--~~~gv~~l~~~i~~~i~~~~  270 (286)
                      .+   .+++.+|+.  .+.|+..+.+.+...+++.+
T Consensus       152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence            12   478999998  57899999999999988643

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.62  E-value=3.8e-15  Score=130.85  Aligned_cols=150  Identities=16%  Similarity=0.224  Sum_probs=97.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCcc-----CCC--------------ccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKY-----DPT--------------IEDFYRKEIEVDKAPCVLEILDTAGTEQFA  166 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~-----~~t--------------~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~  166 (286)
                      +|+++|++|+|||||+++++...-....     .++              +.......+.+++.  .+.+|||||+.+|.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~--~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGH--KINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCE--EEEEEECcCHHHHH
Confidence            4899999999999999999753211000     000              00111233444444  48899999999888


Q ss_pred             hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEE
Q psy10504        167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIE  246 (286)
Q Consensus       167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  246 (286)
                      ..+..+++.+|++++|+|++++........|. .+..    .++|.++++||+|+....   .......+...++.+++.
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~----~~~p~iivvNK~D~~~~~---~~~~~~~l~~~~~~~~~~  150 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE----AGIPRIIFINKMDRERAD---FDKTLAALQEAFGRPVVP  150 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEECCccCCCC---HHHHHHHHHHHhCCCeEE
Confidence            88888999999999999999876554443332 2222    278999999999987321   223344555556655544


Q ss_pred             --EeCCCCCcHHHHHHHHHHH
Q psy10504        247 --ASAKNKTNVNEMFAEIVRE  265 (286)
Q Consensus       247 --vSa~~~~gv~~l~~~i~~~  265 (286)
                        +...++.++..+.+.+...
T Consensus       151 ~~ip~~~~~~~~~~vd~~~~~  171 (268)
T cd04170         151 LQLPIGEGDDFKGVVDLLTEK  171 (268)
T ss_pred             EEecccCCCceeEEEEcccCE
Confidence              4456666666655555443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.62  E-value=9.6e-15  Score=131.98  Aligned_cols=169  Identities=15%  Similarity=0.220  Sum_probs=118.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCc-------------cceEEEEEEECCeEEEEEEEeCCCcccchhhh
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTI-------------EDFYRKEIEVDKAPCVLEILDTAGTEQFASMR  169 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~-------------~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~  169 (286)
                      -+|+|+-|.++|||||++.|+.+  .|.....-.-             .+...+...+....+.+.++|||||.+|..-.
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            47999999999999999999873  3322211100             01222222333344559999999999999999


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-------cCC
Q psy10504        170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS-------WGC  242 (286)
Q Consensus       170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~  242 (286)
                      .+.+.-.|++++++|+.++.    +.+..--+.++. ..+.+-|||+||+|.+++.+..-..+...+...       +..
T Consensus        86 ERvl~MVDgvlLlVDA~EGp----MPQTrFVlkKAl-~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF  160 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEGP----MPQTRFVLKKAL-ALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF  160 (603)
T ss_pred             hhhhhhcceEEEEEEcccCC----CCchhhhHHHHH-HcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence            99999999999999999865    233222222211 127777999999999866655444444444443       347


Q ss_pred             CEEEEeCCCC----------CcHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504        243 PFIEASAKNK----------TNVNEMFAEIVREMNFNPEKDNASFC  278 (286)
Q Consensus       243 ~~~~vSa~~~----------~gv~~l~~~i~~~i~~~~~~~~~~~~  278 (286)
                      |++..||+.|          .++.-||+.|++.++......+.|+.
T Consensus       161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ  206 (603)
T COG1217         161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQ  206 (603)
T ss_pred             cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeE
Confidence            8999999977          46889999999999988766666653

>COG2262 HflX GTPases [General function prediction only]

Probab=99.61  E-value=2e-14  Score=128.89  Aligned_cols=157  Identities=19%  Similarity=0.226  Sum_probs=115.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECC-eEEEEEEEeCCCccc---------chhhhhh
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDK-APCVLEILDTAGTEQ---------FASMRDL  171 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~-~~~~l~l~DtpG~~~---------~~~~~~~  171 (286)
                      .-+.|+++|-.|+|||||+|+|.+... ..+.-.++-+.....+.+.+ ..  +.+-||-|--+         |.+. -.
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~--vlLtDTVGFI~~LP~~LV~AFksT-LE  267 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRK--VLLTDTVGFIRDLPHPLVEAFKST-LE  267 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCce--EEEecCccCcccCChHHHHHHHHH-HH
Confidence            347899999999999999999998544 45666666677778888875 44  77899999332         2221 12


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504        172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN  251 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  251 (286)
                      -...+|.++.|+|+++|...+.+......+... ...++|+|+|.||+|+..+..     ....+..... ..+.+||++
T Consensus       268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~-~~v~iSA~~  340 (411)
T COG2262         268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEI-GADEIPIILVLNKIDLLEDEE-----ILAELERGSP-NPVFISAKT  340 (411)
T ss_pred             HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CCCCCCEEEEEecccccCchh-----hhhhhhhcCC-CeEEEEecc
Confidence            346799999999999997777777766666664 344699999999999863222     1112222222 589999999


Q ss_pred             CCcHHHHHHHHHHHhhcC
Q psy10504        252 KTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i~~~  269 (286)
                      |.|++.|.+.|.+.+...
T Consensus       341 ~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         341 GEGLDLLRERIIELLSGL  358 (411)
T ss_pred             CcCHHHHHHHHHHHhhhc
Confidence            999999999999988754

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.61  E-value=7.2e-15  Score=125.33  Aligned_cols=177  Identities=18%  Similarity=0.271  Sum_probs=111.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCcc--CCCccceEEEEEEECCeEEEEEEEeCCCcccchhh-----hhhcccCccE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKY--DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM-----RDLYIKNGQG  178 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~-----~~~~~~~~d~  178 (286)
                      ||++||+.++||||+.+.+..+..+.+.  -+.+.+.....+...+. +.+++||+||+..+...     +...++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~-~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF-LPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS-CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC-cEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            7999999999999998888876443322  12222333333433322 34999999999866543     5667899999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCCCCC--C---CHHHHHHHHHhcC---CCEEEEeC
Q psy10504        179 FVVVYSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLDLASHQRE--V---PTLDGQALAQSWG---CPFIEASA  249 (286)
Q Consensus       179 vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~--~---~~~~~~~~~~~~~---~~~~~vSa  249 (286)
                      +|+|+|+.+.+-.+++..+...+.... ..|++.+-++++|+|+..++..  .   ............+   +.++.+|.
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI  159 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI  159 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence            999999996555555555444443322 4679999999999998632211  0   1112222233444   67899998


Q ss_pred             CCCCcHHHHHHHHHHHh-hcCCCCcCCCceecCccc
Q psy10504        250 KNKTNVNEMFAEIVREM-NFNPEKDNASFCWCSSCS  284 (286)
Q Consensus       250 ~~~~gv~~l~~~i~~~i-~~~~~~~~~~~~~~~~c~  284 (286)
                      .+ +.+.+.|..|++.+ +..+.-++.....|..|.
T Consensus       160 ~D-~Sly~A~S~Ivq~LiP~~~~le~~L~~~~~~c~  194 (232)
T PF04670_consen  160 WD-ESLYEAWSKIVQKLIPNLSTLENLLNNFCSSCN  194 (232)
T ss_dssp             TS-THHHHHHHHHHHTTSTTHCCCCCCCCHHHCCCT
T ss_pred             cC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhcC
Confidence            88 69999999999986 555666666667777775

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.61  E-value=8.1e-15  Score=144.39  Aligned_cols=113  Identities=17%  Similarity=0.106  Sum_probs=82.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC--cCC-----Cc------------cCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG--CFM-----EK------------YDPTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~-----~~------------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      +..+|+|+|++|+|||||+++|+..  ...     ..            ..+++.+.....+.+++..  +.+|||||+.
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~--i~liDTPG~~   86 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHR--INIIDTPGHV   86 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeE--EEEEECCCCc
Confidence            4458999999999999999999741  110     00            1222223444555666555  8999999999


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      +|...+...++.+|++++|+|+.++...++...|. .+..    .++|+++++||+|+.
T Consensus        87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~----~~~p~ivviNK~D~~  140 (689)
T TIGR00484        87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWR-QANR----YEVPRIAFVNKMDKT  140 (689)
T ss_pred             chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHH-HHHH----cCCCEEEEEECCCCC
Confidence            98888888999999999999999876665443333 2322    278999999999986

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK12739 elongation factor G; Reviewed

Probab=99.61  E-value=2.5e-14  Score=140.90  Aligned_cols=114  Identities=15%  Similarity=0.113  Sum_probs=83.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC--cCC-----C------------ccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG--CFM-----E------------KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~-----~------------~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      +..+|+|+|++++|||||+++|+..  ...     .            ...+.+.+.....+.+++..  +.++||||+.
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~--i~liDTPG~~   84 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHR--INIIDTPGHV   84 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEE--EEEEcCCCHH
Confidence            5678999999999999999999742  110     0            12233334445566666665  8899999999


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                      +|...+...++.+|++++|+|+.++...++..-|. .+..    .++|+++++||+|+..
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~-~~~~----~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWR-QADK----YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEECCCCCC
Confidence            98888888999999999999999876554443322 2222    2789999999999873

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.60  E-value=3.4e-14  Score=127.07  Aligned_cols=161  Identities=16%  Similarity=0.174  Sum_probs=103.7

Q ss_pred             EEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEE---------------------CC-eEEEEEEEeCCCc-
Q psy10504        107 VVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEV---------------------DK-APCVLEILDTAGT-  162 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~---------------------~~-~~~~l~l~DtpG~-  162 (286)
                      |+++|.+++|||||++++++... ...++.++.+.......+                     ++ ..+.+++|||||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999998764 345556554443332222                     22 3356999999997 


Q ss_pred             ---ccchhhhhhc---ccCccEEEEEEECCCc-------------ccHHHH-------HHH--------HHHHH------
Q psy10504        163 ---EQFASMRDLY---IKNGQGFVVVYSLTNH-------------HTFQDI-------KQM--------KELIT------  202 (286)
Q Consensus       163 ---~~~~~~~~~~---~~~~d~vilv~d~~~~-------------~s~~~~-------~~~--------~~~i~------  202 (286)
                         +++..+...+   +++||++++|+|+.+.             ...+++       ..|        +..+.      
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               4455555554   8999999999999731             001111       111        00000      


Q ss_pred             ---------------------------H--------------------HhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH
Q psy10504        203 ---------------------------R--------------------VKGSERVPILLVANKLDLASHQREVPTLDGQA  235 (286)
Q Consensus       203 ---------------------------~--------------------~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~  235 (286)
                                                 .                    ......+|+|+|+||.|+.+. ..  .  ...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~-~~--~--~~~  235 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA-EN--N--ISK  235 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh-HH--H--HHH
Confidence                                       0                    000135799999999997522 11  1  112


Q ss_pred             H-HHhcCCCEEEEeCCCCCcHHHHHH-HHHHHhhcCCCC
Q psy10504        236 L-AQSWGCPFIEASAKNKTNVNEMFA-EIVREMNFNPEK  272 (286)
Q Consensus       236 ~-~~~~~~~~~~vSa~~~~gv~~l~~-~i~~~i~~~~~~  272 (286)
                      + .......++.+||+.+.+++++.+ .+.+.+++.+.-
T Consensus       236 l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f  274 (318)
T cd01899         236 LRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDF  274 (318)
T ss_pred             HHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCc
Confidence            2 222346799999999999999998 699999876643

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.59  E-value=2.9e-14  Score=135.66  Aligned_cols=115  Identities=17%  Similarity=0.281  Sum_probs=78.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc--CcCCC------cc--CCCcc-----------ceEEEEEEECCeEEEEEEEeCCC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS--GCFME------KY--DPTIE-----------DFYRKEIEVDKAPCVLEILDTAG  161 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~------~~--~~t~~-----------~~~~~~~~~~~~~~~l~l~DtpG  161 (286)
                      +..+|+++|++++|||||+++|+.  +....      ..  ..+..           ........++...+.+.+|||||
T Consensus        10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG   89 (527)
T TIGR00503        10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG   89 (527)
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence            557999999999999999999863  21110      00  00111           11222233444455699999999


Q ss_pred             cccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       162 ~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      +.+|.......++.+|++|+|+|+.+....+ ...++.....    .++|+++++||+|+.
T Consensus        90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~----~~~PiivviNKiD~~  145 (527)
T TIGR00503        90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVETR-TRKLMEVTRL----RDTPIFTFMNKLDRD  145 (527)
T ss_pred             hhhHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHh----cCCCEEEEEECcccc
Confidence            9998887777899999999999998853222 2333333222    378999999999985

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.58  E-value=5e-14  Score=107.88  Aligned_cols=105  Identities=23%  Similarity=0.270  Sum_probs=74.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch---------hhhhhccc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA---------SMRDLYIK  174 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~---------~~~~~~~~  174 (286)
                      +|+++|.+|+|||||+|+|++...  ....++++.......+.+++..  +.++||||...-.         ......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            689999999999999999998533  4555666666656667788888  6799999954211         11223348


Q ss_pred             CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeC
Q psy10504        175 NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANK  218 (286)
Q Consensus       175 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK  218 (286)
                      .+|++++|+|++++. -+.....+..+.     .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~-~~~~~~~~~~l~-----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPI-TEDDKNILRELK-----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHS-HHHHHHHHHHHH-----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCC-CHHHHHHHHHHh-----cCCCEEEEEcC
Confidence            899999999988732 233333434442     38899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>KOG1707|consensus

Probab=99.57  E-value=8.6e-15  Score=135.54  Aligned_cols=165  Identities=21%  Similarity=0.372  Sum_probs=120.0

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccc-eEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG  178 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~  178 (286)
                      ..++.++|+++|+.|+|||||+-++....++...++-... .+...+..+...  ..++||+...+-+.....-++.||+
T Consensus         5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vp--t~ivD~ss~~~~~~~l~~EirkA~v   82 (625)
T KOG1707|consen    5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVP--TSIVDTSSDSDDRLCLRKEIRKADV   82 (625)
T ss_pred             cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCc--eEEEecccccchhHHHHHHHhhcCE
Confidence            3457799999999999999999999998887765544321 111223333444  7889998766655556778899999


Q ss_pred             EEEEEECCCcccHHHHHH-HHHHHHHHhC-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--CCEEEEeCCCCCc
Q psy10504        179 FVVVYSLTNHHTFQDIKQ-MKELITRVKG-SERVPILLVANKLDLASHQREVPTLDGQALAQSWG--CPFIEASAKNKTN  254 (286)
Q Consensus       179 vilv~d~~~~~s~~~~~~-~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~g  254 (286)
                      +.++|+++++.+++.+.. |+..+....+ -.++|+|+|+||+|..+............+...+.  -.+++|||++-.+
T Consensus        83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n  162 (625)
T KOG1707|consen   83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN  162 (625)
T ss_pred             EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence            999999999999999875 7777766431 14799999999999984443322223444544444  3579999999999


Q ss_pred             HHHHHHHHHHHh
Q psy10504        255 VNEMFAEIVREM  266 (286)
Q Consensus       255 v~~l~~~i~~~i  266 (286)
                      +.++|-.--+.+
T Consensus       163 ~~e~fYyaqKaV  174 (625)
T KOG1707|consen  163 VSELFYYAQKAV  174 (625)
T ss_pred             hHhhhhhhhhee
Confidence            999987655554

>KOG1191|consensus

Probab=99.57  E-value=1.7e-14  Score=131.32  Aligned_cols=164  Identities=21%  Similarity=0.249  Sum_probs=114.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh---------hhhh
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS---------MRDL  171 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~---------~~~~  171 (286)
                      ..++|+|+|+||+|||||+|+|...  .++...++|+.|.....+.++|.+  +.+.||+|..+-..         -...
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~--v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVP--VRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeE--EEEEeccccccccCChhHHHhHHHHHH
Confidence            5699999999999999999999985  457889999999999999999998  78899999776111         1233


Q ss_pred             cccCccEEEEEEECCCcccHHHH--HHHHHHHHHHh-----CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc--CC
Q psy10504        172 YIKNGQGFVVVYSLTNHHTFQDI--KQMKELITRVK-----GSERVPILLVANKLDLASHQREVPTLDGQALAQSW--GC  242 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~~~s~~~~--~~~~~~i~~~~-----~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~  242 (286)
                      -+..+|++++|+|+.....-+++  ...+.......     .....|++++.||.|+....++.............  ..
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~  424 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF  424 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence            46789999999999443332222  22222222110     11247899999999998543333322111111111  13


Q ss_pred             C-EEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        243 P-FIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       243 ~-~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      + ..++|+++++|++.|.+.+...+..
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~~  451 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVER  451 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHHH
Confidence            3 4569999999999999999987754

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.56  E-value=9.2e-14  Score=120.90  Aligned_cols=154  Identities=23%  Similarity=0.229  Sum_probs=113.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh-------hhhhcccC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS-------MRDLYIKN  175 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~-------~~~~~~~~  175 (286)
                      .-+|+++|.|++|||||+++|.+... ...|+.|+-......+.+++.+  +|++|+||.-.-.+       ..-...++
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~--IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQ--IQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCce--EEEEcCcccccCcccCCCCcceeeeeecc
Confidence            47899999999999999999999654 6789999989999999999988  89999998543222       23446799


Q ss_pred             ccEEEEEEECCCccc-HHHHHHHHH-----------------------------------------HHHHHh--------
Q psy10504        176 GQGFVVVYSLTNHHT-FQDIKQMKE-----------------------------------------LITRVK--------  205 (286)
Q Consensus       176 ~d~vilv~d~~~~~s-~~~~~~~~~-----------------------------------------~i~~~~--------  205 (286)
                      ||.+++|+|+..+.. .+.+...+.                                         .+..+.        
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            999999999986543 222211111                                         000100        


Q ss_pred             ---------------CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        206 ---------------GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       206 ---------------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                                     ...-+|.++|.||+|+.+      .+....+.+..  .++.+||+.+.|++++.+.|.+.+.
T Consensus       221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~------~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG------LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             ecCCcHHHHHHHHhhcceeeeeEEEEecccccC------HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence                           012589999999999972      23444444444  7899999999999999999999764

>PRK00007 elongation factor G; Reviewed

Probab=99.56  E-value=4.9e-14  Score=138.79  Aligned_cols=113  Identities=17%  Similarity=0.166  Sum_probs=82.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc--CcCC-----C------------ccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS--GCFM-----E------------KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~--~~~~-----~------------~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      +..+|+|+|++|+|||||+++|+.  +...     .            ...+.+.+.....+.+.+..  +.++||||+.
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~--~~liDTPG~~   86 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHR--INIIDTPGHV   86 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeE--EEEEeCCCcH
Confidence            456899999999999999999974  2110     0            12223334444556666655  8899999999


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      +|.......++.+|++++|+|+..+...++..-|.. +..    .++|.++++||+|+.
T Consensus        87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~-~~~----~~~p~iv~vNK~D~~  140 (693)
T PRK00007         87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQ-ADK----YKVPRIAFVNKMDRT  140 (693)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCCC
Confidence            887777778899999999999988766655444333 222    278999999999986

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.56  E-value=4.9e-15  Score=121.24  Aligned_cols=117  Identities=25%  Similarity=0.358  Sum_probs=73.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEE-CCeEEEEEEEeCCCcccchhhhhh---cccCccEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEV-DKAPCVLEILDTAGTEQFASMRDL---YIKNGQGF  179 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~---~~~~~d~v  179 (286)
                      ...|+++|+.|+|||+|+.+|..+......... .....  +.. ......+.++|+|||.+.+.....   +...+.++
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            467999999999999999999998555444333 22221  112 122223889999999988864333   47889999


Q ss_pred             EEEEECCC-cccHHHHHHHHHHHHHHh--CCCCCcEEEEEeCCCCCC
Q psy10504        180 VVVYSLTN-HHTFQDIKQMKELITRVK--GSERVPILLVANKLDLAS  223 (286)
Q Consensus       180 ilv~d~~~-~~s~~~~~~~~~~i~~~~--~~~~~piivv~nK~Dl~~  223 (286)
                      |+|+|++. .....++.+++..+....  ....+|++|++||.|+..
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            99999974 445555555554444332  235789999999999974

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.54  E-value=3.2e-13  Score=113.09  Aligned_cols=162  Identities=17%  Similarity=0.210  Sum_probs=103.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCcc---CCCccceEEEEEEECCeEEEEEEEeCCCcccchh--------h---hh
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKY---DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS--------M---RD  170 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~--------~---~~  170 (286)
                      ++|+++|.+|+|||||+|++++.......   .+.+..........++..  +.++||||-.+...        +   ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~--i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRR--VNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeE--EEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            37999999999999999999986543222   234444445555666666  88999999654321        1   11


Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCCCCCCCC-----CCHHHHHHHHHhcCCCE
Q psy10504        171 LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLASHQRE-----VPTLDGQALAQSWGCPF  244 (286)
Q Consensus       171 ~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~  244 (286)
                      ....+.|++++|+++++ .+-++ ...+..+..... ..-.++++|+||.|.......     ......+.+.+..+-.+
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            23467899999999987 33222 233444433221 112588999999997633210     01134455556666566


Q ss_pred             EEEe-----CCCCCcHHHHHHHHHHHhhcCC
Q psy10504        245 IEAS-----AKNKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       245 ~~vS-----a~~~~gv~~l~~~i~~~i~~~~  270 (286)
                      +..+     +..+.++++|++.|-+.++++.
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~  187 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKENG  187 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence            5555     4567899999999999988733

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.54  E-value=1.3e-13  Score=138.66  Aligned_cols=146  Identities=20%  Similarity=0.199  Sum_probs=100.7

Q ss_pred             cHHHHHHHHhcCcCCCccCCCccceEEEE-EEECCeE----------------EEEEEEeCCCcccchhhhhhcccCccE
Q psy10504        116 GKSALTVQFVSGCFMEKYDPTIEDFYRKE-IEVDKAP----------------CVLEILDTAGTEQFASMRDLYIKNGQG  178 (286)
Q Consensus       116 GKTSLi~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~----------------~~l~l~DtpG~~~~~~~~~~~~~~~d~  178 (286)
                      +||||++++.+..+.....+.+++.+... +..+...                ..+.|||||||+.|..++...+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            39999999999999888888888665543 3332110                127899999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCC------------HHHHHHH----------
Q psy10504        179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVP------------TLDGQAL----------  236 (286)
Q Consensus       179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~------------~~~~~~~----------  236 (286)
                      +++|+|++++...+.... +..+..    .++|+++|+||+|+........            ......+          
T Consensus       553 vlLVVDa~~Gi~~qT~e~-I~~lk~----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~  627 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEA-INILRQ----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGK  627 (1049)
T ss_pred             EEEEEECcccCCHhHHHH-HHHHHH----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence            999999997533332222 222222    2689999999999963211000            0000111          


Q ss_pred             -H------------Hhc--CCCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504        237 -A------------QSW--GCPFIEASAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       237 -~------------~~~--~~~~~~vSa~~~~gv~~l~~~i~~~i  266 (286)
                       .            +.+  .++++++||++|+|+++|+++|....
T Consensus       628 L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        628 LYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             HHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence             1            111  26899999999999999999887543

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.54  E-value=1.2e-13  Score=121.06  Aligned_cols=163  Identities=20%  Similarity=0.198  Sum_probs=114.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh----hhhh---cccCcc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS----MRDL---YIKNGQ  177 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~----~~~~---~~~~~d  177 (286)
                      -|.++|-|++|||||++.+...+. ..+|+.|+-...-..+..++.. .|.+-|.||..+-.+    +-..   .+..|.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~-sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGE-SFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCC-cEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            468999999999999999998544 7889888876666666653322 288999999554322    2233   346689


Q ss_pred             EEEEEEECCCccc---HHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEE-EEeCCCC
Q psy10504        178 GFVVVYSLTNHHT---FQDIKQMKELITRVK-GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFI-EASAKNK  252 (286)
Q Consensus       178 ~vilv~d~~~~~s---~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~vSa~~~  252 (286)
                      +++.|+|++..+.   .++......++..+. ...++|.+||+||+|+.. ..+........+.+..+.... .+||.++
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~-~~e~~~~~~~~l~~~~~~~~~~~ISa~t~  318 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL-DEEELEELKKALAEALGWEVFYLISALTR  318 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc-CHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence            9999999986543   566666666666653 445899999999999762 222222333444444443322 2999999


Q ss_pred             CcHHHHHHHHHHHhhcCC
Q psy10504        253 TNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       253 ~gv~~l~~~i~~~i~~~~  270 (286)
                      +|++++...+.+.+.+.+
T Consensus       319 ~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         319 EGLDELLRALAELLEETK  336 (369)
T ss_pred             cCHHHHHHHHHHHHHHhh
Confidence            999999999999887664

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=6.2e-14  Score=125.72  Aligned_cols=150  Identities=18%  Similarity=0.174  Sum_probs=98.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcC--cCCC------------------------------ccCCCccceEEEEEEECC
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSG--CFME------------------------------KYDPTIEDFYRKEIEVDK  149 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~------------------------------~~~~t~~~~~~~~~~~~~  149 (286)
                      ..+++++++||+++|||||+-+|+..  .+..                              .+.+-  +.......+..
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGv--Ti~~~~~~fet   82 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGV--TIDVAHSKFET   82 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcce--EEEEEEEEeec
Confidence            46799999999999999999888751  1111                              00111  11122233344


Q ss_pred             eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc---cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC
Q psy10504        150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH---TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR  226 (286)
Q Consensus       150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~  226 (286)
                      ..+.++++|+|||.+|-..+-.....||+.|||+|+++++   ++....+..+.+.-.+...-..+||++||+|..+   
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~---  159 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS---  159 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccc---
Confidence            4456999999999999998999999999999999999873   2211222222222212222346789999999983   


Q ss_pred             CCCHHHH-------HHHHHhcC-----CCEEEEeCCCCCcHHH
Q psy10504        227 EVPTLDG-------QALAQSWG-----CPFIEASAKNKTNVNE  257 (286)
Q Consensus       227 ~~~~~~~-------~~~~~~~~-----~~~~~vSa~~~~gv~~  257 (286)
                       +++...       ..+.+..|     ++|++|||..|+|+.+
T Consensus       160 -wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         160 -WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             -cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence             222222       22444444     5699999999999865

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.53  E-value=1.1e-13  Score=118.17  Aligned_cols=163  Identities=17%  Similarity=0.219  Sum_probs=108.8

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCcc-CC-CccceEEEEEEECCeEEEEEEEeCCCccc-------chhhhhhc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKY-DP-TIEDFYRKEIEVDKAPCVLEILDTAGTEQ-------FASMRDLY  172 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~-~~-t~~~~~~~~~~~~~~~~~l~l~DtpG~~~-------~~~~~~~~  172 (286)
                      ..+++|+++|..|+|||||+|+|+.+....-. .+ ++.....-...+++..  +.+||+||-++       ++.....+
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~--l~lwDtPG~gdg~~~D~~~r~~~~d~  114 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGEN--LVLWDTPGLGDGKDKDAEHRQLYRDY  114 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccc--eEEecCCCcccchhhhHHHHHHHHHH
Confidence            35689999999999999999999975432211 11 2211111122344444  89999999654       66677788


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC-------CCCHH-------HHHHHHH
Q psy10504        173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR-------EVPTL-------DGQALAQ  238 (286)
Q Consensus       173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-------~~~~~-------~~~~~~~  238 (286)
                      +...|.++++.++.|+.---+...|.+.+...   -+.|+++++|.+|.....+       ..+..       +.+...+
T Consensus       115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~---~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILG---LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             hhhccEEEEeccCCCccccCCHHHHHHHHHhc---cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            89999999999999986444444444444432   2489999999999863211       11111       1111222


Q ss_pred             hcC--CCEEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504        239 SWG--CPFIEASAKNKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       239 ~~~--~~~~~vSa~~~~gv~~l~~~i~~~i~~~  269 (286)
                      ...  -|++.+|...+.|++++...++..++..
T Consensus       192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         192 LFQEVKPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             HHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence            222  4788899999999999999999988743

>cd01850 CDC_Septin CDC/Septin

Probab=99.53  E-value=1.6e-13  Score=120.79  Aligned_cols=142  Identities=21%  Similarity=0.280  Sum_probs=88.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCc----------cCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccch------
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEK----------YDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFA------  166 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~----------~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~------  166 (286)
                      .++|+++|++|+|||||+|+|++..+...          ..+|+. ......+..++..+.+++|||||..++.      
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            58999999999999999999999766443          223322 3334455667878889999999943221      


Q ss_pred             --------------------hhhhhcccC--ccEEEEEEECCCcccHHHHHHH-HHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        167 --------------------SMRDLYIKN--GQGFVVVYSLTNHHTFQDIKQM-KELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       167 --------------------~~~~~~~~~--~d~vilv~d~~~~~s~~~~~~~-~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                                          ..+...+.+  +|+++++++.+...    +..+ +..+....  .++|+++|+||+|+..
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~----l~~~D~~~lk~l~--~~v~vi~VinK~D~l~  157 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG----LKPLDIEFMKRLS--KRVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC----CCHHHHHHHHHHh--ccCCEEEEEECCCcCC
Confidence                                112133433  67777777766422    1222 22222222  2689999999999862


Q ss_pred             C-CCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504        224 H-QREVPTLDGQALAQSWGCPFIEASAKN  251 (286)
Q Consensus       224 ~-~~~~~~~~~~~~~~~~~~~~~~vSa~~  251 (286)
                      . +..............++++++......
T Consensus       158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            1 122233345556667788888766543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.50  E-value=7.9e-13  Score=121.69  Aligned_cols=162  Identities=17%  Similarity=0.194  Sum_probs=104.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCC-CccCCCccceEEEEEEE---------------------C-CeEEEEEEEeCCC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDFYRKEIEV---------------------D-KAPCVLEILDTAG  161 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~~~~~~~~---------------------~-~~~~~l~l~DtpG  161 (286)
                      ++|+++|.||+|||||+++|.+.... ..++.++.+.......+                     + .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            58999999999999999999987653 45666654444433221                     1 1235689999999


Q ss_pred             cc----cchhhhhhc---ccCccEEEEEEECCCc-------------ccHHH-------HHHH--------HHHHH----
Q psy10504        162 TE----QFASMRDLY---IKNGQGFVVVYSLTNH-------------HTFQD-------IKQM--------KELIT----  202 (286)
Q Consensus       162 ~~----~~~~~~~~~---~~~~d~vilv~d~~~~-------------~s~~~-------~~~~--------~~~i~----  202 (286)
                      ..    +...+...+   ++++|++++|+|+.+.             .-.++       +..|        +..+.    
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~  161 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ  161 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            43    344455555   7899999999999721             00110       0000        00000    


Q ss_pred             -------------------------H----H--------------------hCCCCCcEEEEEeCCCCCCCCCCCCHHHH
Q psy10504        203 -------------------------R----V--------------------KGSERVPILLVANKLDLASHQREVPTLDG  233 (286)
Q Consensus       203 -------------------------~----~--------------------~~~~~~piivv~nK~Dl~~~~~~~~~~~~  233 (286)
                                               .    .                    .....+|+++|+||.|......     ..
T Consensus       162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~-----~l  236 (396)
T PRK09602        162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEE-----NI  236 (396)
T ss_pred             cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchH-----HH
Confidence                                     0    0                    0113589999999999752111     12


Q ss_pred             HHHHHhcCCCEEEEeCCCCCcHHH-HHHHHHHHhhcCCC
Q psy10504        234 QALAQSWGCPFIEASAKNKTNVNE-MFAEIVREMNFNPE  271 (286)
Q Consensus       234 ~~~~~~~~~~~~~vSa~~~~gv~~-l~~~i~~~i~~~~~  271 (286)
                      ..+.+..+..++.+||+.+.++++ +.+.+.+.+++.+.
T Consensus       237 ~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~  275 (396)
T PRK09602        237 ERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSD  275 (396)
T ss_pred             HHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCc
Confidence            222222346789999999999999 89999998887663

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=1.4e-13  Score=119.42  Aligned_cols=173  Identities=17%  Similarity=0.180  Sum_probs=113.7

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCc---CCCccCCCcc--------------c-----eEEE--EEEEC----CeEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGC---FMEKYDPTIE--------------D-----FYRK--EIEVD----KAPCV  153 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~---~~~~~~~t~~--------------~-----~~~~--~~~~~----~~~~~  153 (286)
                      ..+++|.++||.++|||||..+|.+-.   +.+.....+.              +     .+..  .....    ....+
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            467999999999999999999998721   1111100000              0     0000  00000    22346


Q ss_pred             EEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCHHH
Q psy10504        154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPTLD  232 (286)
Q Consensus       154 l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~  232 (286)
                      +.|+|.|||+-..+.+-....-.|+++||++++.+----+.++-+..+.-.   .-..+|+|-||+|+.+.++. ....+
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~q  164 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYEQ  164 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHHH
Confidence            899999999998888888888899999999999843222223222333221   13578999999999843332 12233


Q ss_pred             HHHHHHh---cCCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCc
Q psy10504        233 GQALAQS---WGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASF  277 (286)
Q Consensus       233 ~~~~~~~---~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~  277 (286)
                      +..|.+-   .+.|++++||..+.|+|.+++.|.+.++......+.+-
T Consensus       165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p  212 (415)
T COG5257         165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPP  212 (415)
T ss_pred             HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCc
Confidence            3333332   23799999999999999999999999998777665554

>PRK12740 elongation factor G; Reviewed

Probab=99.50  E-value=2.6e-13  Score=133.63  Aligned_cols=106  Identities=21%  Similarity=0.216  Sum_probs=74.2

Q ss_pred             ECCCCCcHHHHHHHHhcC--cCCC--cc---------------CCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhh
Q psy10504        110 LGSGGVGKSALTVQFVSG--CFME--KY---------------DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRD  170 (286)
Q Consensus       110 vG~~~~GKTSLi~~l~~~--~~~~--~~---------------~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~  170 (286)
                      +|++|+|||||+++|...  ....  ..               .+.+.......+.+++.  .+.+|||||+.+|...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~--~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGH--KINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCE--EEEEEECCCcHHHHHHHH
Confidence            699999999999999642  1110  00               01111222234455554  489999999999888888


Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        171 LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       171 ~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      .+++.+|++++|+|+++....+....|. .+..    .++|+++|+||+|+.
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~----~~~p~iiv~NK~D~~  125 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK----YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH----cCCCEEEEEECCCCC
Confidence            8999999999999999876655543332 2222    278999999999986

>KOG0090|consensus

Probab=99.49  E-value=4.2e-13  Score=110.26  Aligned_cols=157  Identities=18%  Similarity=0.254  Sum_probs=104.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhccc---CccEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIK---NGQGFVV  181 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~---~~d~vil  181 (286)
                      ..|+++|+.++|||+|+-+|..+.+....+..  ......+.+.+..  .+++|.|||.+.+.....++.   .+.++||
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi--epn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF  114 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI--EPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF  114 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeeeee--ccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence            46999999999999999999998544433222  2334555555555  789999999988876666666   7899999


Q ss_pred             EEECCC-cccHHHHHHHHHHHHHHh--CCCCCcEEEEEeCCCCCCCCCC-----CCHHHHHHHHH---------------
Q psy10504        182 VYSLTN-HHTFQDIKQMKELITRVK--GSERVPILLVANKLDLASHQRE-----VPTLDGQALAQ---------------  238 (286)
Q Consensus       182 v~d~~~-~~s~~~~~~~~~~i~~~~--~~~~~piivv~nK~Dl~~~~~~-----~~~~~~~~~~~---------------  238 (286)
                      |+|+.. ..-..++..++-.+....  ....+|+++++||.|+.-+...     .-+.++..+.+               
T Consensus       115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~  194 (238)
T KOG0090|consen  115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK  194 (238)
T ss_pred             EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence            999764 444455555444443322  3447899999999998633211     00001111100               


Q ss_pred             -----------------hcCCCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504        239 -----------------SWGCPFIEASAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       239 -----------------~~~~~~~~vSa~~~~gv~~l~~~i~~~i  266 (286)
                                       ...+.|.++|++++ +++++-+||.+.+
T Consensus       195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l  238 (238)
T KOG0090|consen  195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL  238 (238)
T ss_pred             cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence                             01245789999998 9999999997753

>KOG1144|consensus

Probab=99.48  E-value=2.4e-13  Score=128.58  Aligned_cols=162  Identities=18%  Similarity=0.204  Sum_probs=116.1

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECC-------------e----EEEEEEEeCCCcc
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDK-------------A----PCVLEILDTAGTE  163 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~----~~~l~l~DtpG~~  163 (286)
                      ..+.+-|||+||.++|||-|+..+.+..+.....+++++.+..++....             .    --.+.++|||||+
T Consensus       472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE  551 (1064)
T KOG1144|consen  472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE  551 (1064)
T ss_pred             hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence            4567889999999999999999999988888888888766655543211             0    1137789999999


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHH------------
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL------------  231 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~------------  231 (286)
                      .|..++.++...||.+|+|+|+..+-..+.+.. +..++.    .+.|+||++||+|...........            
T Consensus       552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiES-i~lLR~----rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~  626 (1064)
T KOG1144|consen  552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIES-INLLRM----RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD  626 (1064)
T ss_pred             hhhhhhhccccccceEEEEeehhccCCcchhHH-HHHHHh----cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence            999999999999999999999987544444333 222332    378999999999976432111000            


Q ss_pred             HHHHH-----------HHh-c-----------C--CCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        232 DGQAL-----------AQS-W-----------G--CPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       232 ~~~~~-----------~~~-~-----------~--~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      ....|           ++. +           +  +.++++||.+|+|+.+|+-+|++...
T Consensus       627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ  687 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence            00111           110 0           1  35789999999999999999988654

>KOG0461|consensus

Probab=99.45  E-value=2.4e-12  Score=112.67  Aligned_cols=170  Identities=14%  Similarity=0.143  Sum_probs=111.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC----cCCCccCCCcc----ceEEEEEE-------ECCeEEEEEEEeCCCcccchh
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG----CFMEKYDPTIE----DFYRKEIE-------VDKAPCVLEILDTAGTEQFAS  167 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~----~~~~~~~~t~~----~~~~~~~~-------~~~~~~~l~l~DtpG~~~~~~  167 (286)
                      ..+++.++||.++|||||.+++..-    .|......+.+    |..-..+.       ..+.+.+++++|+|||...-.
T Consensus         6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR   85 (522)
T KOG0461|consen    6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR   85 (522)
T ss_pred             ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence            4589999999999999999999762    22222222211    11111111       235667789999999976655


Q ss_pred             hhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-CCCCHHHH-HHHHH---hc--
Q psy10504        168 MRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ-REVPTLDG-QALAQ---SW--  240 (286)
Q Consensus       168 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~-~~~~~---~~--  240 (286)
                      ......+-.|..++|+|+..+...+..+.++..-.-     -...+||+||+|...+. +....++. ..+.+   ..  
T Consensus        86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f  160 (522)
T KOG0461|consen   86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF  160 (522)
T ss_pred             HHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence            555556667999999999988776666554332221     23568888999875332 22111111 11111   11  


Q ss_pred             --CCCEEEEeCCCC----CcHHHHHHHHHHHhhcCCCCcCCCc
Q psy10504        241 --GCPFIEASAKNK----TNVNEMFAEIVREMNFNPEKDNASF  277 (286)
Q Consensus       241 --~~~~~~vSa~~~----~gv~~l~~~i~~~i~~~~~~~~~~~  277 (286)
                        +.|++++||+.|    +++.++.+.|-..+-+.......++
T Consensus       161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~gpf  203 (522)
T KOG0461|consen  161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEEGPF  203 (522)
T ss_pred             CCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCCCCe
Confidence              178999999999    8999999999999887777666665

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.43  E-value=2.5e-12  Score=127.50  Aligned_cols=115  Identities=17%  Similarity=0.211  Sum_probs=79.5

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC--cCCCccCCC---------------ccceE--EEEEEECCeEEEEEEEeCCCcc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPT---------------IEDFY--RKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t---------------~~~~~--~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      +.-+|+++||.++|||||+.+|+..  .......+.               +....  ...+..++..+.+.|+|||||.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            4568999999999999999999852  111111110               00111  1122334456678999999999


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      +|.......++.+|++++|+|+..+...+....|......     ++|.|+++||+|+.
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-----~~~~iv~iNK~D~~  152 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-----RVKPVLFINKVDRL  152 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-----CCCeEEEEECchhh
Confidence            9988888899999999999999887554444434332222     57889999999986

>PRK09866 hypothetical protein; Provisional

Probab=99.42  E-value=9.5e-12  Score=117.96  Aligned_cols=109  Identities=20%  Similarity=0.238  Sum_probs=72.4

Q ss_pred             EEEEEeCCCcccc-----hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC
Q psy10504        153 VLEILDTAGTEQF-----ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE  227 (286)
Q Consensus       153 ~l~l~DtpG~~~~-----~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~  227 (286)
                      ++.|+||||....     .......+..+|++++|+|+++..+..+. .....+....  .+.|+++|+||+|+.+... 
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~--K~~PVILVVNKIDl~dree-  306 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVG--QSVPLYVLVNKFDQQDRNS-  306 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcC--CCCCEEEEEEcccCCCccc-
Confidence            4789999996532     22344578999999999999885544442 2334444321  1359999999999862222 


Q ss_pred             CCHHHHHHHHH----hc---CCCEEEEeCCCCCcHHHHHHHHHHH
Q psy10504        228 VPTLDGQALAQ----SW---GCPFIEASAKNKTNVNEMFAEIVRE  265 (286)
Q Consensus       228 ~~~~~~~~~~~----~~---~~~~~~vSa~~~~gv~~l~~~i~~~  265 (286)
                      ........+..    ..   ...++++||++|.|++++++.|...
T Consensus       307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            12333333322    11   2468999999999999999999884

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.41  E-value=1.1e-12  Score=129.67  Aligned_cols=116  Identities=20%  Similarity=0.219  Sum_probs=80.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCc---------------CCCcc--CC-Ccc-ceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGC---------------FMEKY--DP-TIE-DFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~---------------~~~~~--~~-t~~-~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      +..+|+++|+.++|||||+++|+...               +...+  .+ |+. ......+..++..+.+.+|||||+.
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            45799999999999999999997521               10000  01 111 1111223356667779999999999


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                      +|.......++.+|++++|+|+.++...+....|... ..    .++|.++++||+|...
T Consensus        98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~-~~----~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQA-LK----ENVKPVLFINKVDRLI  152 (720)
T ss_pred             ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHH-HH----cCCCEEEEEEChhccc
Confidence            9988888899999999999999886544443333222 12    2678899999999863

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=4.9e-12  Score=114.39  Aligned_cols=166  Identities=15%  Similarity=0.091  Sum_probs=114.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCC----CccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFM----EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      -|+..|+..+|||||+..+.+..-.    ....+++.|...+....++.  .+.|+|.|||+++-......+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            3788999999999999999884322    22344444555555555555  48999999999998888888889999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh---cCCCEEEEeCCCCCcHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS---WGCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~vSa~~~~gv~~l  258 (286)
                      |+|++++-..+..+. +..+..   ..-...++|+||+|..+..+.  .+....+...   ...+++.+|+++|+|+++|
T Consensus        80 vV~~deGl~~qtgEh-L~iLdl---lgi~~giivltk~D~~d~~r~--e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~L  153 (447)
T COG3276          80 VVAADEGLMAQTGEH-LLILDL---LGIKNGIIVLTKADRVDEARI--EQKIKQILADLSLANAKIFKTSAKTGRGIEEL  153 (447)
T ss_pred             EEeCccCcchhhHHH-HHHHHh---cCCCceEEEEeccccccHHHH--HHHHHHHHhhcccccccccccccccCCCHHHH
Confidence            999987654443332 112221   113356999999999743321  1222222222   2367899999999999999


Q ss_pred             HHHHHHHhhcCCCCcCCCcee
Q psy10504        259 FAEIVREMNFNPEKDNASFCW  279 (286)
Q Consensus       259 ~~~i~~~i~~~~~~~~~~~~~  279 (286)
                      .+.|.+.........+.+++.
T Consensus       154 k~~l~~L~~~~e~d~~~~fri  174 (447)
T COG3276         154 KNELIDLLEEIERDEQKPFRI  174 (447)
T ss_pred             HHHHHHhhhhhhhccCCceEE
Confidence            999999886555555555543

>PRK13768 GTPase; Provisional

Probab=99.35  E-value=4.3e-12  Score=110.46  Aligned_cols=113  Identities=20%  Similarity=0.209  Sum_probs=71.3

Q ss_pred             EEEEEeCCCcccch---hhhhhcc---cC--ccEEEEEEECCCcccHHHHHH--HHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        153 VLEILDTAGTEQFA---SMRDLYI---KN--GQGFVVVYSLTNHHTFQDIKQ--MKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       153 ~l~l~DtpG~~~~~---~~~~~~~---~~--~d~vilv~d~~~~~s~~~~~~--~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      .+.+||+||+.+..   ..+..++   ..  ++++++++|++......+...  |+.......  .++|+++|+||+|+.
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~nK~D~~  175 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLNKADLL  175 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEhHhhc
Confidence            47899999987643   3332222   22  899999999977554444332  222222111  378999999999987


Q ss_pred             CCCCCCCHHH-HH------------------------HHHHhcC--CCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        223 SHQREVPTLD-GQ------------------------ALAQSWG--CPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       223 ~~~~~~~~~~-~~------------------------~~~~~~~--~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      +......... ..                        ...+..+  .+++++||+++.|+++++++|.+.+.
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            3321100000 00                        0112223  58899999999999999999988774

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=8.4e-12  Score=107.27  Aligned_cols=174  Identities=18%  Similarity=0.239  Sum_probs=112.8

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcC---c-------CCC-ccCC----CccceEEEEEEECCeEEEEEEEeCCCcccc
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSG---C-------FME-KYDP----TIEDFYRKEIEVDKAPCVLEILDTAGTEQF  165 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~---~-------~~~-~~~~----t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~  165 (286)
                      ...+++|..+||.++|||||..++..-   .       +.. +..|    ........++.+.-...++-.+|+|||.+|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence            346799999999999999998877651   0       000 0001    011222344444444455888999999999


Q ss_pred             hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCC--CCHHHHHHHHHhcC-
Q psy10504        166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQRE--VPTLDGQALAQSWG-  241 (286)
Q Consensus       166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-  241 (286)
                      -..........|+.|+|++++|+.-.+.    .+.+.-.+. -++| ++++.||+|+.++..-  .-..+...+...++ 
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpmPqT----rEHiLlarq-vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f  163 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPMPQT----REHILLARQ-VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF  163 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCCCcc----hhhhhhhhh-cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence            9888888889999999999999663332    222222111 2665 5566799999843322  22334455555665 


Q ss_pred             ----CCEEEEeCCCC--------CcHHHHHHHHHHHhhcCCCCcCCCcee
Q psy10504        242 ----CPFIEASAKNK--------TNVNEMFAEIVREMNFNPEKDNASFCW  279 (286)
Q Consensus       242 ----~~~~~vSa~~~--------~gv~~l~~~i~~~i~~~~~~~~~~~~~  279 (286)
                          .|++.-||+..        .-+.+|.+++-.+++........++..
T Consensus       164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~dkPflm  213 (394)
T COG0050         164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDIDKPFLM  213 (394)
T ss_pred             CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcccccccc
Confidence                56777777642        236788888888888877777766643

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.33  E-value=9e-12  Score=125.07  Aligned_cols=117  Identities=18%  Similarity=0.229  Sum_probs=82.2

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCc---------------cceEEEEEEE--------------CC
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTI---------------EDFYRKEIEV--------------DK  149 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~---------------~~~~~~~~~~--------------~~  149 (286)
                      +.+..+|+|+||.++|||||+++|+...  ......+++               .......+.+              ++
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            3355689999999999999999998632  111111110               0111112222              12


Q ss_pred             eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      ..+.++++|||||.+|.......++.+|++|+|+|+.++...+...-|......     ++|+++++||+|+.
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-----~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC-----CCCEEEEEECCccc
Confidence            355689999999999998888889999999999999988766655544443333     78999999999987

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.33  E-value=9.1e-12  Score=109.51  Aligned_cols=149  Identities=22%  Similarity=0.193  Sum_probs=97.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCC----------Ccc--CCCcc----------------------ceEEEEEEEC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFM----------EKY--DPTIE----------------------DFYRKEIEVD  148 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~----------~~~--~~t~~----------------------~~~~~~~~~~  148 (286)
                      ..++.+.+|+.+-|||||+-+|+.+.-.          ...  .++.+                      |.-...+.. 
T Consensus         5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT-   83 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST-   83 (431)
T ss_pred             cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc-
Confidence            4589999999999999999999873210          011  11211                      111111222 


Q ss_pred             CeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC
Q psy10504        149 KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREV  228 (286)
Q Consensus       149 ~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~  228 (286)
                       .+.+|.+-|||||++|...+......||++|+++|+..+..-+.-+  ...+....+  =..+++++||+||.+-.++.
T Consensus        84 -~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR--Hs~I~sLLG--IrhvvvAVNKmDLvdy~e~~  158 (431)
T COG2895          84 -EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRR--HSFIASLLG--IRHVVVAVNKMDLVDYSEEV  158 (431)
T ss_pred             -ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHH--HHHHHHHhC--CcEEEEEEeeecccccCHHH
Confidence             2334889999999999999999999999999999997654222211  122222222  24678889999998433221


Q ss_pred             ---CHHHHHHHHHhcC---CCEEEEeCCCCCcHHH
Q psy10504        229 ---PTLDGQALAQSWG---CPFIEASAKNKTNVNE  257 (286)
Q Consensus       229 ---~~~~~~~~~~~~~---~~~~~vSa~~~~gv~~  257 (286)
                         -..+...++..++   ..++++||..|+|+-.
T Consensus       159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence               2233455677777   4689999999999843

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.32  E-value=7.8e-12  Score=94.28  Aligned_cols=137  Identities=17%  Similarity=0.167  Sum_probs=92.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcc----cchhhhhhcccCccEEEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE----QFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~----~~~~~~~~~~~~~d~vil  181 (286)
                      |++++|..|+|||||.+++.+.......        +.-+.+.+..    .+||||.-    .+..-......++|++++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~lykK--------TQAve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~   70 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLYKK--------TQAVEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVIIY   70 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhhcc--------cceeeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence            7899999999999999999886433222        1223333332    48999942    222223334678999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~~l~~  260 (286)
                      |-.++++++.-..     .+..   ....|+|-|++|.|+.+ ..  +....+.+..+.| -++|++|+.+..|++++++
T Consensus        71 v~~and~~s~f~p-----~f~~---~~~k~vIgvVTK~DLae-d~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~  139 (148)
T COG4917          71 VHAANDPESRFPP-----GFLD---IGVKKVIGVVTKADLAE-DA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVD  139 (148)
T ss_pred             eecccCccccCCc-----cccc---ccccceEEEEecccccc-hH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence            9999998643221     1111   12467999999999983 22  2334444555556 6799999999999999999


Q ss_pred             HHHHH
Q psy10504        261 EIVRE  265 (286)
Q Consensus       261 ~i~~~  265 (286)
                      .+...
T Consensus       140 ~L~~~  144 (148)
T COG4917         140 YLASL  144 (148)
T ss_pred             HHHhh
Confidence            88653

>KOG1490|consensus

Probab=99.31  E-value=9.5e-12  Score=113.69  Aligned_cols=162  Identities=13%  Similarity=0.122  Sum_probs=115.0

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch----hhh-----hh
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA----SMR-----DL  171 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~----~~~-----~~  171 (286)
                      +....++++|-|++|||||++.+..... +..|+.|+......++.+....  ++++||||.-+.-    ...     ..
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlr--wQViDTPGILD~plEdrN~IEmqsITA  243 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLR--WQVIDTPGILDRPEEDRNIIEMQIITA  243 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheee--eeecCCccccCcchhhhhHHHHHHHHH
Confidence            3557899999999999999999887654 6778888776666666666555  8899999944211    111     11


Q ss_pred             cccCccEEEEEEECCC--cccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHH---HHHHHHHhcCCCEEE
Q psy10504        172 YIKNGQGFVVVYSLTN--HHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL---DGQALAQSWGCPFIE  246 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~  246 (286)
                      ..+-..+|++++|++.  +-|.+.-..+++.+.....  +.|+|+|+||+|+.. ....+.+   ..+.+....++++++
T Consensus       244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa--NK~~IlvlNK~D~m~-~edL~~~~~~ll~~~~~~~~v~v~~  320 (620)
T KOG1490|consen  244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA--NKVTILVLNKIDAMR-PEDLDQKNQELLQTIIDDGNVKVVQ  320 (620)
T ss_pred             HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc--CCceEEEeecccccC-ccccCHHHHHHHHHHHhccCceEEE
Confidence            1233457999999987  4566666667777766443  899999999999873 3333333   234444455589999


Q ss_pred             EeCCCCCcHHHHHHHHHHHhhc
Q psy10504        247 ASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       247 vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      +|+.+.+|+-++....++.+..
T Consensus       321 tS~~~eegVm~Vrt~ACe~LLa  342 (620)
T KOG1490|consen  321 TSCVQEEGVMDVRTTACEALLA  342 (620)
T ss_pred             ecccchhceeeHHHHHHHHHHH
Confidence            9999999998887777776554

>KOG0458|consensus

Probab=99.30  E-value=2.6e-11  Score=112.70  Aligned_cols=157  Identities=19%  Similarity=0.197  Sum_probs=97.4

Q ss_pred             CCCcceEEEEEECCCCCcHHHHHHHHhcC--cCCC------------------------------ccCCCccceEEEEEE
Q psy10504         99 SFTMREFKVVVLGSGGVGKSALTVQFVSG--CFME------------------------------KYDPTIEDFYRKEIE  146 (286)
Q Consensus        99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~------------------------------~~~~t~~~~~~~~~~  146 (286)
                      ..+...+.++++||.++|||||+-+++..  .+..                              ...+-+.+.  ....
T Consensus       172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v--~~~~  249 (603)
T KOG0458|consen  172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDV--KTTW  249 (603)
T ss_pred             cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEe--eeEE
Confidence            34446789999999999999998888651  1100                              011111122  2233


Q ss_pred             ECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc---cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        147 VDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH---TFQDIKQMKELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       147 ~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                      ++.....++++|+|||..|-.........+|+.+||+|++-..   .|+.-.+..+...-.+...-..+||++||+|+.+
T Consensus       250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~  329 (603)
T KOG0458|consen  250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVS  329 (603)
T ss_pred             EecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccC
Confidence            4455556999999999999998888999999999999998632   2221122222111111122447899999999972


Q ss_pred             CCCCCCHHH----HHHHH-HhcC-----CCEEEEeCCCCCcHHHH
Q psy10504        224 HQREVPTLD----GQALA-QSWG-----CPFIEASAKNKTNVNEM  258 (286)
Q Consensus       224 ~~~~~~~~~----~~~~~-~~~~-----~~~~~vSa~~~~gv~~l  258 (286)
                       -.+...++    ...+. +..|     +.+++||+.+|+|+-..
T Consensus       330 -Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  330 -WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             -ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence             11111111    11222 3344     47999999999998543

>cd00066 G-alpha G protein alpha subunit

Probab=99.29  E-value=4.1e-11  Score=107.61  Aligned_cols=118  Identities=14%  Similarity=0.107  Sum_probs=84.5

Q ss_pred             EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCc----------ccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCC
Q psy10504        152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH----------HTFQDIKQMKELITRVKGSERVPILLVANKLDL  221 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl  221 (286)
                      +.+.+||++|+...+..|..++.+++++++|+|+++.          ..+.+....+..+.......++|+++++||.|+
T Consensus       161 ~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~  240 (317)
T cd00066         161 LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDL  240 (317)
T ss_pred             eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHH
Confidence            4589999999999999999999999999999999974          345555555666655444468999999999996


Q ss_pred             CCCC--------------C-CCCHHHHHHHHHh-----c-----CCCEEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504        222 ASHQ--------------R-EVPTLDGQALAQS-----W-----GCPFIEASAKNKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       222 ~~~~--------------~-~~~~~~~~~~~~~-----~-----~~~~~~vSa~~~~gv~~l~~~i~~~i~~~  269 (286)
                      ....              . ..+......+...     .     .+-++.++|.+..+++.+|+.+.+.+...
T Consensus       241 f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         241 FEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             HHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            4110              0 1122222222211     1     13356789999999999999998887654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=3.9e-11  Score=108.22  Aligned_cols=115  Identities=23%  Similarity=0.329  Sum_probs=80.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc--CcCC------Cc--cCCCcc-----------ceEEEEEEECCeEEEEEEEeCCC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS--GCFM------EK--YDPTIE-----------DFYRKEIEVDKAPCVLEILDTAG  161 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~--~~~~------~~--~~~t~~-----------~~~~~~~~~~~~~~~l~l~DtpG  161 (286)
                      +.-..+|+-||++|||||..+|+-  +.+.      ..  ...+..           ...+...+++...+.+.+.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            344678999999999999988864  2111      10  011111           22333445555556699999999


Q ss_pred             cccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       162 ~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      |++|..-.=+.+..+|.+++|+|+..+...+..+-.  ...+   ..++||+-.+||.|..
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLf--eVcr---lR~iPI~TFiNKlDR~  146 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLF--EVCR---LRDIPIFTFINKLDRE  146 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCccHHHHHHH--HHHh---hcCCceEEEeeccccc
Confidence            999998877888899999999999987655554421  2222   3489999999999975

>PTZ00416 elongation factor 2; Provisional

Probab=99.28  E-value=1.7e-11  Score=122.97  Aligned_cols=115  Identities=22%  Similarity=0.248  Sum_probs=79.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCcc---------------ceEEEEEEEC--------CeEEEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIE---------------DFYRKEIEVD--------KAPCVLEIL  157 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~---------------~~~~~~~~~~--------~~~~~l~l~  157 (286)
                      +..+|+++|+.++|||||+++|+..  .......+++.               +.....+.+.        +....+.|+
T Consensus        18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li   97 (836)
T PTZ00416         18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI   97 (836)
T ss_pred             CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence            4458999999999999999999862  11111111100               1001122222        224568999


Q ss_pred             eCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        158 DTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       158 DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      |||||.+|.......++.+|++|+|+|+.++...+...-| ..+..    .++|+++++||+|+.
T Consensus        98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH----cCCCEEEEEEChhhh
Confidence            9999999988888889999999999999987655544333 22222    278999999999986

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.27  E-value=7e-11  Score=102.32  Aligned_cols=96  Identities=16%  Similarity=0.256  Sum_probs=77.5

Q ss_pred             ccchhhhhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC
Q psy10504        163 EQFASMRDLYIKNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG  241 (286)
Q Consensus       163 ~~~~~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  241 (286)
                      ++|..+.+.+++++|++++|+|++++. +++.+..|+..+..    .++|+++|+||+|+. ..+.........+. ..+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~-~~~~~~~~~~~~~~-~~g   97 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLL-DDEDMEKEQLDIYR-NIG   97 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccC-CCHHHHHHHHHHHH-HCC
Confidence            578888899999999999999999987 89999998876543    379999999999996 23333223334443 478


Q ss_pred             CCEEEEeCCCCCcHHHHHHHHHH
Q psy10504        242 CPFIEASAKNKTNVNEMFAEIVR  264 (286)
Q Consensus       242 ~~~~~vSa~~~~gv~~l~~~i~~  264 (286)
                      .+++++||++|.|++++|+.+..
T Consensus        98 ~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        98 YQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             CeEEEEecCCchhHHHHHhhhcC
Confidence            89999999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PTZ00258 GTP-binding protein; Provisional

Probab=99.25  E-value=1.3e-10  Score=106.26  Aligned_cols=85  Identities=21%  Similarity=0.169  Sum_probs=62.3

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeE---------------EEEEEEeCCCcccc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAP---------------CVLEILDTAGTEQF  165 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~DtpG~~~~  165 (286)
                      ...++|+++|.||+|||||+|+|.+... ...++.|+.+.....+.+.+..               .++.++||||...-
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            4668999999999999999999987544 5667778777777666655332               24889999995421


Q ss_pred             h----hhh---hhcccCccEEEEEEECC
Q psy10504        166 A----SMR---DLYIKNGQGFVVVYSLT  186 (286)
Q Consensus       166 ~----~~~---~~~~~~~d~vilv~d~~  186 (286)
                      .    .+.   ...++.+|++++|+|+.
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            1    122   22457799999999984

>TIGR00101 ureG urease accessory protein UreG

Probab=99.24  E-value=2e-10  Score=96.38  Aligned_cols=101  Identities=18%  Similarity=0.133  Sum_probs=63.3

Q ss_pred             EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcE--EEEEeCCCCCCCCCCCC
Q psy10504        152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPI--LLVANKLDLASHQREVP  229 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi--ivv~nK~Dl~~~~~~~~  229 (286)
                      ....++++.|..--.....   .-+|.++.|+|+.+......  .+.         +++..  ++++||+|+.+. ....
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~---------~qi~~ad~~~~~k~d~~~~-~~~~  156 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGG---------PGITRSDLLVINKIDLAPM-VGAD  156 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhH---------hHhhhccEEEEEhhhcccc-cccc
Confidence            3466788888322111211   12678999999987655321  111         12333  899999999732 1112


Q ss_pred             HHHHHHHHH--hcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        230 TLDGQALAQ--SWGCPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       230 ~~~~~~~~~--~~~~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      ........+  ..+.+++++||++|+|++++|++|.++++
T Consensus       157 ~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       157 LGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            222233333  34589999999999999999999998764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG1532|consensus

Probab=99.24  E-value=7e-11  Score=100.80  Aligned_cols=167  Identities=15%  Similarity=0.163  Sum_probs=92.0

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc------------------ceEEE-------EEEE--------
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE------------------DFYRK-------EIEV--------  147 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~------------------~~~~~-------~~~~--------  147 (286)
                      ..+++-|+++|-.|+|||||+++|.........+|-..                  +...+       .+..        
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL   95 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL   95 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence            44667899999999999999999987433222222111                  00000       0000        


Q ss_pred             ----------------CCeEEEEEEEeCCCcccchhhhh------hcccC--ccEEEEEEECCCcccHHH-HHHHHHHHH
Q psy10504        148 ----------------DKAPCVLEILDTAGTEQFASMRD------LYIKN--GQGFVVVYSLTNHHTFQD-IKQMKELIT  202 (286)
Q Consensus       148 ----------------~~~~~~l~l~DtpG~~~~~~~~~------~~~~~--~d~vilv~d~~~~~s~~~-~~~~~~~i~  202 (286)
                                      ....+...++|||||.+-.....      ..+..  .-++++++|.....+... +..++-...
T Consensus        96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS  175 (366)
T KOG1532|consen   96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS  175 (366)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence                            11224578999999875332221      12222  235666666543221111 112111111


Q ss_pred             HHhCCCCCcEEEEEeCCCCCCCCCCCC----HHHHH--------------------HHHHh-cCCCEEEEeCCCCCcHHH
Q psy10504        203 RVKGSERVPILLVANKLDLASHQREVP----TLDGQ--------------------ALAQS-WGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       203 ~~~~~~~~piivv~nK~Dl~~~~~~~~----~~~~~--------------------~~~~~-~~~~~~~vSa~~~~gv~~  257 (286)
                      - ...-..|.|+|.||+|+.+..-...    .+.-+                    .+.+- .++..+.||+.+|.|.++
T Consensus       176 i-lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~dd  254 (366)
T KOG1532|consen  176 I-LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDD  254 (366)
T ss_pred             H-HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHH
Confidence            1 1223789999999999974431110    00000                    01111 136789999999999999


Q ss_pred             HHHHHHHHhhc
Q psy10504        258 MFAEIVREMNF  268 (286)
Q Consensus       258 l~~~i~~~i~~  268 (286)
                      +|..+-+.+.+
T Consensus       255 f~~av~~~vdE  265 (366)
T KOG1532|consen  255 FFTAVDESVDE  265 (366)
T ss_pred             HHHHHHHHHHH
Confidence            99999887654

>cd01882 BMS1 Bms1

Probab=99.24  E-value=1.7e-10  Score=98.81  Aligned_cols=139  Identities=14%  Similarity=0.150  Sum_probs=81.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      .+..|+++|++|+|||||++.+.+..-........+. .. .....+.  .+.++||||..  ..+ ....+.+|+++++
T Consensus        38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~-i~~~~~~--~i~~vDtPg~~--~~~-l~~ak~aDvVllv  110 (225)
T cd01882          38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-IT-VVTGKKR--RLTFIECPNDI--NAM-IDIAKVADLVLLL  110 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EE-EEecCCc--eEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence            4577999999999999999999874221111111111 11 1122333  48899999864  222 2346889999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcE-EEEEeCCCCCCCCCCCCH--HHHHH-HHHh--cCCCEEEEeCCCCC
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPI-LLVANKLDLASHQREVPT--LDGQA-LAQS--WGCPFIEASAKNKT  253 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ivv~nK~Dl~~~~~~~~~--~~~~~-~~~~--~~~~~~~vSa~~~~  253 (286)
                      +|++.+...+.. ..+..+..    .++|. ++|+||+|+.........  ..... +...  .+.+++.+||++.-
T Consensus       111 iDa~~~~~~~~~-~i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         111 IDASFGFEMETF-EFLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EecCcCCCHHHH-HHHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            999876544332 23333332    26775 459999998632211111  11111 2211  23789999999863

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>smart00275 G_alpha G protein alpha subunit

Probab=99.23  E-value=2.4e-10  Score=103.59  Aligned_cols=117  Identities=14%  Similarity=0.122  Sum_probs=83.5

Q ss_pred             EEEEEeCCCcccchhhhhhcccCccEEEEEEECCCc----------ccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        153 VLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH----------HTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       153 ~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      .+.+||++|+...+..|..++.+++++++|+|+++.          ..+++....+..+.......++|+++++||.|+.
T Consensus       185 ~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~  264 (342)
T smart00275      185 FFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLF  264 (342)
T ss_pred             EEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhH
Confidence            488999999999999999999999999999999973          3455555566666654555689999999999974


Q ss_pred             CCC--------------CCCCHHHHHHHHH-----hc------CCCEEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504        223 SHQ--------------REVPTLDGQALAQ-----SW------GCPFIEASAKNKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       223 ~~~--------------~~~~~~~~~~~~~-----~~------~~~~~~vSa~~~~gv~~l~~~i~~~i~~~  269 (286)
                      ...              ...+......+..     ..      .+-++.++|.+..++..+|+.+.+.+...
T Consensus       265 ~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~  336 (342)
T smart00275      265 EEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR  336 (342)
T ss_pred             HHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence            110              0012222222211     11      13356788999999999999888877653

Subunit of G proteins that contains the guanine nucleotide binding site

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=9e-11  Score=114.26  Aligned_cols=118  Identities=17%  Similarity=0.113  Sum_probs=88.0

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcC--cCCC-ccCC---Ccc-------------ceEEEEEEECCeEEEEEEEeCCCc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSG--CFME-KYDP---TIE-------------DFYRKEIEVDKAPCVLEILDTAGT  162 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~-~~~~---t~~-------------~~~~~~~~~~~~~~~l~l~DtpG~  162 (286)
                      .+.-+|.|+||.++|||||..+++-.  .... ....   +..             ......+.+.+ .+.++++|||||
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGH   86 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGH   86 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCc
Confidence            35568999999999999999999752  1111 0000   011             11223344444 455999999999


Q ss_pred             ccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504        163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ  225 (286)
Q Consensus       163 ~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~  225 (286)
                      -+|..-..+.++.+|++++|+|+.++...+.-.-|......     ++|.++++||+|....+
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~a~  144 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY-----GVPRILFVNKMDRLGAD  144 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc-----CCCeEEEEECccccccC
Confidence            99999999999999999999999998877777777666555     89999999999987443

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.22  E-value=9.1e-11  Score=90.12  Aligned_cols=114  Identities=25%  Similarity=0.258  Sum_probs=82.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccC-CCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYD-PTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +||+++|+.|+|||+|+.++....+...+. ++.+                          +......+.+.++.+++|+
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~   54 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW   54 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence            489999999999999999998877765443 3332                          3444566788899999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVN  256 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~  256 (286)
                      +.++..+++.+  |...+... ...+.|.++++||.|+.+. ........        .+++++|++++.|+.
T Consensus        55 ~~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~-~~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       55 RVDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEE-RQVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             EccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhh-CcCCHHHH--------HHHHHHhCCCcchhh
Confidence            99999888766  66555542 3357899999999998522 23333222        234568899999874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG0705|consensus

Probab=99.21  E-value=2.4e-11  Score=111.98  Aligned_cols=182  Identities=21%  Similarity=0.369  Sum_probs=140.1

Q ss_pred             eeccCCCCCCCCCCCCCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504         84 FLVPTDLLPRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      ..+...+.+++++..+....++|+.|+|..++|||+|+++++.+.++....+..+.+ .+.+..++....+.+.|.+|+.
T Consensus        10 ~~~~dafvnsqewtlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~-kkE~vv~gqs~lLlirdeg~~~   88 (749)
T KOG0705|consen   10 DSIEDAFVNSQEWTLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRF-KKEVVVDGQSHLLLIRDEGGHP   88 (749)
T ss_pred             hhHHHhhccccceeeecccchhheeeeecccCCceeeeeeeccceeccccCCcCccc-eeeEEeeccceEeeeecccCCc
Confidence            334555667777777777889999999999999999999999999988887776655 4445556666667788888843


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC-CCCCCHHHHHHH-HHhcC
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH-QREVPTLDGQAL-AQSWG  241 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~-~~~~~  241 (286)
                           ...|....|++|+||...|..+++.+..+...+..+.....+|+++++++.-...+ .+.+.......+ ++...
T Consensus        89 -----~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~kr  163 (749)
T KOG0705|consen   89 -----DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKR  163 (749)
T ss_pred             -----hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCc
Confidence                 35677789999999999999999999998888877766778999999988554311 233334444444 44445


Q ss_pred             CCEEEEeCCCCCcHHHHHHHHHHHhhcCCC
Q psy10504        242 CPFIEASAKNKTNVNEMFAEIVREMNFNPE  271 (286)
Q Consensus       242 ~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~  271 (286)
                      +.+++++|.+|.++..+|+.++.++....+
T Consensus       164 csy~et~atyGlnv~rvf~~~~~k~i~~~~  193 (749)
T KOG0705|consen  164 CSYYETCATYGLNVERVFQEVAQKIVQLRK  193 (749)
T ss_pred             cceeecchhhhhhHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999988765433

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.21  E-value=4.4e-10  Score=99.24  Aligned_cols=119  Identities=19%  Similarity=0.191  Sum_probs=72.3

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhh-------hc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRD-------LY  172 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~-------~~  172 (286)
                      ...++|+++|.+|+||||++|++++...  .+...++...........++..  +.++||||..+......       .+
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~--l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFT--LNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeE--EEEEECCCCCchHHHHHHHHHHHHHH
Confidence            4678999999999999999999998654  2222222222222233345544  89999999765432211       11


Q ss_pred             c--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCCC
Q psy10504        173 I--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLA  222 (286)
Q Consensus       173 ~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~  222 (286)
                      +  ...|++++|..++.....+.-.+.+..+....+ .--.+.|||.|+.|..
T Consensus       114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~  166 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS  166 (313)
T ss_pred             hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence            2  258999999776543222122233444443221 1135789999999976

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.20  E-value=3.5e-10  Score=101.54  Aligned_cols=105  Identities=18%  Similarity=0.206  Sum_probs=65.7

Q ss_pred             EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCH
Q psy10504        152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPT  230 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~  230 (286)
                      +.+.|+||+|..+-..   .....+|.++++.+...+..++.++   ..+..      ..-++|+||+|+...... ...
T Consensus       149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEEeehhcccchhHHHHHH
Confidence            4588999999763332   2466799999997644444333332   21222      223899999998732211 011


Q ss_pred             HHHHHHHH-------hcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        231 LDGQALAQ-------SWGCPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       231 ~~~~~~~~-------~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      .+......       .+..|++.+||+++.|++++++.|.+.++.
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~  261 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA  261 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            11111111       123689999999999999999999998763

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.20  E-value=3.7e-10  Score=97.88  Aligned_cols=118  Identities=19%  Similarity=0.142  Sum_probs=73.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch--h-h-------hh
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA--S-M-------RD  170 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~--~-~-------~~  170 (286)
                      ..++|+++|.+|+|||||+|++.+...  .....+++..........++..  +.+|||||-....  . .       ..
T Consensus        30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~--i~vIDTPGl~~~~~~~~~~~~~~~~I~  107 (249)
T cd01853          30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFK--LNIIDTPGLLESVMDQRVNRKILSSIK  107 (249)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeE--EEEEECCCcCcchhhHHHHHHHHHHHH
Confidence            568999999999999999999999654  2333344444444445555655  8999999966442  1 1       12


Q ss_pred             hccc--CccEEEEEEECCCcccHHHHHHHHHHHHHHhCC-CCCcEEEEEeCCCCC
Q psy10504        171 LYIK--NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGS-ERVPILLVANKLDLA  222 (286)
Q Consensus       171 ~~~~--~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~  222 (286)
                      .++.  ..|++++|..++....-..-...+..+...... --.++++|.||+|..
T Consensus       108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~  162 (249)
T cd01853         108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS  162 (249)
T ss_pred             HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence            2333  468888887776532112222334444432211 124799999999985

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.20  E-value=3e-10  Score=101.01  Aligned_cols=163  Identities=19%  Similarity=0.171  Sum_probs=101.6

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCc---------------cceEEEEEEECC---------------
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI---------------EDFYRKEIEVDK---------------  149 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~---------------~~~~~~~~~~~~---------------  149 (286)
                      ..+.++.|+.+|+.++|||||+-.|..+......-.+-               .+.....+.+++               
T Consensus       113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~  192 (527)
T COG5258         113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK  192 (527)
T ss_pred             CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence            34578999999999999999988887765543322111               111122222222               


Q ss_pred             ------eEEEEEEEeCCCcccchhh--hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCC
Q psy10504        150 ------APCVLEILDTAGTEQFASM--RDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL  221 (286)
Q Consensus       150 ------~~~~l~l~DtpG~~~~~~~--~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl  221 (286)
                            ....+.|+||.||+.|-..  +..+-+..|..++++.++|+.+.-.-..+-..+.     -+.|+++++||+|+
T Consensus       193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a-----~~lPviVvvTK~D~  267 (527)
T COG5258         193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA-----MELPVIVVVTKIDM  267 (527)
T ss_pred             hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh-----hcCCEEEEEEeccc
Confidence                  1134789999999998764  4445578999999999999754322222111222     27899999999999


Q ss_pred             CCCCCCC-CHHHH----------------------HHHHHhcC---CCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        222 ASHQREV-PTLDG----------------------QALAQSWG---CPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       222 ~~~~~~~-~~~~~----------------------~~~~~~~~---~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      .++++.. ..++.                      ...+.+.+   +|++.+|+-+|+|++-|.+.+. .++.
T Consensus       268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~-~Lp~  339 (527)
T COG5258         268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL-LLPK  339 (527)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH-hCCc
Confidence            7443210 00111                      11111222   6899999999999987755444 4443

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.19  E-value=5e-10  Score=95.00  Aligned_cols=162  Identities=20%  Similarity=0.273  Sum_probs=97.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCcc---CCCccceEEEEEEECCeEEEEEEEeCCCcccchh--------hh---h
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKY---DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS--------MR---D  170 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~--------~~---~  170 (286)
                      ++|+++|..|+||||++|.+++.......   .+.+..........++..  +.++||||-.+...        +.   .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            58999999999999999999986553322   233334555556778877  88999999432111        11   1


Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCC-CCCcEEEEEeCCCCCCCCCC---CC---HHHHHHHHHhcCCC
Q psy10504        171 LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGS-ERVPILLVANKLDLASHQRE---VP---TLDGQALAQSWGCP  243 (286)
Q Consensus       171 ~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~~~~~~---~~---~~~~~~~~~~~~~~  243 (286)
                      ....+.|++++|+.++ +-+-++. ..+..+...... --..++||.|..|.......   +.   ......+.+..+-.
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~~-~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEEDR-EVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHHH-HHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecC-cchHHHH-HHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            2345689999999998 3333222 233333333221 12468999999987633221   01   12244566677778


Q ss_pred             EEEEeCC------CCCcHHHHHHHHHHHhhcCC
Q psy10504        244 FIEASAK------NKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       244 ~~~vSa~------~~~gv~~l~~~i~~~i~~~~  270 (286)
                      |+.++.+      ....+.+|++.|-+.+.++.
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            8888776      33568888888888777655

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.18  E-value=2.6e-10  Score=96.38  Aligned_cols=151  Identities=17%  Similarity=0.117  Sum_probs=84.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCC-------CccCC-Ccc-----ceEEEEEEECC--------------------
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFM-------EKYDP-TIE-----DFYRKEIEVDK--------------------  149 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~-------~~~~~-t~~-----~~~~~~~~~~~--------------------  149 (286)
                      ..+.|+++|+.|+|||||++++......       ..... ...     ......+...+                    
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~  100 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL  100 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence            3578999999999999999999763110       00000 000     00000011110                    


Q ss_pred             eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCC
Q psy10504        150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVP  229 (286)
Q Consensus       150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~  229 (286)
                      ....+.++||.|.-...   ..+....+..+.|+|+.+......  .. ...      .+.|.++++||+|+.+... ..
T Consensus       101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~--~~-~~~------~~~a~iiv~NK~Dl~~~~~-~~  167 (207)
T TIGR00073       101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL--KY-PGM------FKEADLIVINKADLAEAVG-FD  167 (207)
T ss_pred             CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh--hh-HhH------HhhCCEEEEEHHHccccch-hh
Confidence            12346778888821111   111223455667888876542111  10 111      1457899999999973211 12


Q ss_pred             HHHHHHHHHhc--CCCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504        230 TLDGQALAQSW--GCPFIEASAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       230 ~~~~~~~~~~~--~~~~~~vSa~~~~gv~~l~~~i~~~i  266 (286)
                      ..+.....+..  ..+++++||++|.|++++++++.+..
T Consensus       168 ~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       168 VEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            22233333333  38999999999999999999998754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0460|consensus

Probab=99.17  E-value=1.6e-10  Score=101.20  Aligned_cols=174  Identities=16%  Similarity=0.180  Sum_probs=113.8

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcC-------cCCC--------ccCCCccceEEEEEEECCeEEEEEEEeCCCccc
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSG-------CFME--------KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ  164 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~-------~~~~--------~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~  164 (286)
                      .+..+.+|.-+||.++|||||-.++..-       .+..        .+..-.......++.+.-...++-=.|+|||.+
T Consensus        50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD  129 (449)
T KOG0460|consen   50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD  129 (449)
T ss_pred             cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence            3456799999999999999997777540       1100        011111133345555655555677899999999


Q ss_pred             chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC--CCHHHHHHHHHhcC-
Q psy10504        165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE--VPTLDGQALAQSWG-  241 (286)
Q Consensus       165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-  241 (286)
                      |-..........|+.|+|++++|+.    +.+..+.+.-++...-..+++.+||.|+.++...  .-+.+.+++...++ 
T Consensus       130 YIKNMItGaaqMDGaILVVaatDG~----MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf  205 (449)
T KOG0460|consen  130 YIKNMITGAAQMDGAILVVAATDGP----MPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF  205 (449)
T ss_pred             HHHHhhcCccccCceEEEEEcCCCC----CcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence            9988888888999999999999976    3443333333232222356788899999844332  33345556666665 


Q ss_pred             ----CCEEEEeCC---CCC-------cHHHHHHHHHHHhhcCCCCcCCCc
Q psy10504        242 ----CPFIEASAK---NKT-------NVNEMFAEIVREMNFNPEKDNASF  277 (286)
Q Consensus       242 ----~~~~~vSa~---~~~-------gv~~l~~~i~~~i~~~~~~~~~~~  277 (286)
                          +|++.-||+   .|.       .+.+|++.+=.+++....+.+.++
T Consensus       206 ~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pF  255 (449)
T KOG0460|consen  206 DGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPF  255 (449)
T ss_pred             CCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCc
Confidence                688887776   332       256677777777776666665554

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.17  E-value=6.7e-10  Score=100.49  Aligned_cols=82  Identities=21%  Similarity=0.196  Sum_probs=60.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeE---------------EEEEEEeCCCcccch--
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAP---------------CVLEILDTAGTEQFA--  166 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~DtpG~~~~~--  166 (286)
                      ++|+++|.||+|||||+|++.+... ...++.|+.+.....+.+.+..               ..+.++|+||...-.  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            6899999999999999999998654 4567777777666666655531               248999999954311  


Q ss_pred             --hhhh---hcccCccEEEEEEECC
Q psy10504        167 --SMRD---LYIKNGQGFVVVYSLT  186 (286)
Q Consensus       167 --~~~~---~~~~~~d~vilv~d~~  186 (286)
                        .+..   ..++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence              1222   2357899999999984

>KOG0468|consensus

Probab=99.15  E-value=2.4e-10  Score=107.54  Aligned_cols=119  Identities=23%  Similarity=0.270  Sum_probs=89.6

Q ss_pred             CCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-------------c-----eEEEEE---EECCeEEEEEEE
Q psy10504         99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-------------D-----FYRKEI---EVDKAPCVLEIL  157 (286)
Q Consensus        99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-------------~-----~~~~~~---~~~~~~~~l~l~  157 (286)
                      ..+.+..+|+++|+-++|||+|++.|.....+..+..+-.             .     ....++   ...++.+.++++
T Consensus       123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil  202 (971)
T KOG0468|consen  123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL  202 (971)
T ss_pred             cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence            3445678999999999999999999988655443222111             0     000111   234677789999


Q ss_pred             eCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        158 DTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       158 DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      |||||-.|..-....++.+|++++++|+.++..+..-+-....+..     +.|+++|+||+|..
T Consensus       203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~-----~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQN-----RLPIVVVINKVDRL  262 (971)
T ss_pred             cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhc-----cCcEEEEEehhHHH
Confidence            9999999999999999999999999999999877765555555554     88999999999963

>KOG3905|consensus

Probab=99.13  E-value=1e-09  Score=95.76  Aligned_cols=168  Identities=16%  Similarity=0.226  Sum_probs=112.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEE--CCeEEEEEEEeCCCcccchhhhhhcccCc----
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEV--DKAPCVLEILDTAGTEQFASMRDLYIKNG----  176 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~l~DtpG~~~~~~~~~~~~~~~----  176 (286)
                      ..-+|+++|+.++|||||+.+|.+..-...  +..-.+..-.+..  .+...++.+|=..|..-...+....+...    
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e~~Kk--gsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae  128 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSETVKK--GSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE  128 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhcccccCC--CCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence            456899999999999999999987542221  1111222222222  12233467788888766566555555443    


Q ss_pred             cEEEEEEECCCccc-HHHHHHHHHHHHHHhCC------------------------------------------------
Q psy10504        177 QGFVVVYSLTNHHT-FQDIKQMKELITRVKGS------------------------------------------------  207 (286)
Q Consensus       177 d~vilv~d~~~~~s-~~~~~~~~~~i~~~~~~------------------------------------------------  207 (286)
                      -.+|++.|+++|+. ++.+..|...+..+...                                                
T Consensus       129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~  208 (473)
T KOG3905|consen  129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV  208 (473)
T ss_pred             eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence            36899999999954 45555565433322100                                                


Q ss_pred             ------------CCCcEEEEEeCCCCCC---CCC-------CCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHH
Q psy10504        208 ------------ERVPILLVANKLDLAS---HQR-------EVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE  265 (286)
Q Consensus       208 ------------~~~piivv~nK~Dl~~---~~~-------~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~  265 (286)
                                  -++|++||+||+|...   .+.       ..-...++.++..+|...+.+|+++..|++-+...|.+.
T Consensus       209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr  288 (473)
T KOG3905|consen  209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR  288 (473)
T ss_pred             ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence                        3699999999999831   111       122345678899999999999999999999999999998


Q ss_pred             hhcCCCC
Q psy10504        266 MNFNPEK  272 (286)
Q Consensus       266 i~~~~~~  272 (286)
                      +-.-+..
T Consensus       289 ~yG~~ft  295 (473)
T KOG3905|consen  289 SYGFPFT  295 (473)
T ss_pred             hcCcccC
Confidence            7665433

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.12  E-value=1.8e-11  Score=105.42  Aligned_cols=112  Identities=19%  Similarity=0.179  Sum_probs=58.5

Q ss_pred             EEEEEeCCCcccchhhhhhcc--------cCccEEEEEEECCCcccHHH-HHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        153 VLEILDTAGTEQFASMRDLYI--------KNGQGFVVVYSLTNHHTFQD-IKQMKELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       153 ~l~l~DtpG~~~~~~~~~~~~--------~~~d~vilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                      .+.++|||||.++...+...-        ...-++++++|+.-...... +..++..+... ..-+.|.|.|+||+|+.+
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~  170 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS  170 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence            478999999998877665543        44568899999875433222 22222222111 112789999999999973


Q ss_pred             CCCC--C----------------CHHHHHHHHHhc---C-C-CEEEEeCCCCCcHHHHHHHHHHH
Q psy10504        224 HQRE--V----------------PTLDGQALAQSW---G-C-PFIEASAKNKTNVNEMFAEIVRE  265 (286)
Q Consensus       224 ~~~~--~----------------~~~~~~~~~~~~---~-~-~~~~vSa~~~~gv~~l~~~i~~~  265 (286)
                      ....  .                .....+.+++..   + . .++++|+++++|+++++..|-+.
T Consensus       171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a  235 (238)
T PF03029_consen  171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA  235 (238)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred             chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence            1100  0                011111222222   2 3 79999999999999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.12  E-value=1.9e-09  Score=97.76  Aligned_cols=156  Identities=15%  Similarity=0.226  Sum_probs=98.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC----c-------------CCCccCC---CccceEE-----EEEE-ECCeEEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG----C-------------FMEKYDP---TIEDFYR-----KEIE-VDKAPCVLEI  156 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~----~-------------~~~~~~~---t~~~~~~-----~~~~-~~~~~~~l~l  156 (286)
                      -.+-|+++|+.++|||||+++|.+.    .             .+++.++   ++++...     ..+. .++....+++
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            4578999999999999999999986    1             2333444   4444333     2222 2455566899


Q ss_pred             EeCCCcccchhh-----------------------------hhhccc-CccEEEEEE-ECC--C--cccHHH-HHHHHHH
Q psy10504        157 LDTAGTEQFASM-----------------------------RDLYIK-NGQGFVVVY-SLT--N--HHTFQD-IKQMKEL  200 (286)
Q Consensus       157 ~DtpG~~~~~~~-----------------------------~~~~~~-~~d~vilv~-d~~--~--~~s~~~-~~~~~~~  200 (286)
                      +||+|-..-.++                             ....++ .++..++|. |.+  +  ++.+.+ -..+...
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            999993311110                             122344 788888888 764  1  122222 2345555


Q ss_pred             HHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC--CCcHHHHHHHHHHH
Q psy10504        201 ITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN--KTNVNEMFAEIVRE  265 (286)
Q Consensus       201 i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~--~~gv~~l~~~i~~~  265 (286)
                      +...    ++|+++|+||.|-. ...  .......+.+.++++++.+|+.+  .+.+..+++.++..
T Consensus       176 Lk~~----~kPfiivlN~~dp~-~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~E  235 (492)
T TIGR02836       176 LKEL----NKPFIILLNSTHPY-HPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYE  235 (492)
T ss_pred             HHhc----CCCEEEEEECcCCC-Cch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhc
Confidence            5553    89999999999943 111  33445566788899998888874  45677777766654

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.09  E-value=1.1e-09  Score=89.56  Aligned_cols=79  Identities=28%  Similarity=0.199  Sum_probs=54.1

Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCC--CcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--CCEEEEeCCC
Q psy10504        176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSER--VPILLVANKLDLASHQREVPTLDGQALAQSWG--CPFIEASAKN  251 (286)
Q Consensus       176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~--~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~  251 (286)
                      .+.-|+|+|++.++-          +.. +.-|.  ..=++|+||.|+. ..-..+.+....-+++.+  .+++++|+++
T Consensus       118 d~~~v~VidvteGe~----------~P~-K~gP~i~~aDllVInK~DLa-~~v~~dlevm~~da~~~np~~~ii~~n~kt  185 (202)
T COG0378         118 DHLRVVVIDVTEGED----------IPR-KGGPGIFKADLLVINKTDLA-PYVGADLEVMARDAKEVNPEAPIIFTNLKT  185 (202)
T ss_pred             hceEEEEEECCCCCC----------Ccc-cCCCceeEeeEEEEehHHhH-HHhCccHHHHHHHHHHhCCCCCEEEEeCCC
Confidence            347899999987641          111 00011  1238999999997 444444555555555544  8999999999


Q ss_pred             CCcHHHHHHHHHHHh
Q psy10504        252 KTNVNEMFAEIVREM  266 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i  266 (286)
                      |+|++++++|+....
T Consensus       186 g~G~~~~~~~i~~~~  200 (202)
T COG0378         186 GEGLDEWLRFIEPQA  200 (202)
T ss_pred             CcCHHHHHHHHHhhc
Confidence            999999999998754

>cd01900 YchF YchF subfamily

Probab=99.09  E-value=7e-10  Score=97.14  Aligned_cols=80  Identities=19%  Similarity=0.167  Sum_probs=58.8

Q ss_pred             EEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeE---------------EEEEEEeCCCcccch----
Q psy10504        107 VVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAP---------------CVLEILDTAGTEQFA----  166 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~DtpG~~~~~----  166 (286)
                      |+++|.||+|||||+|++.+... ...++.++.+.....+.+.+..               ..++++|+||..+-.    
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            57999999999999999999655 5567777777777666665532               248999999954211    


Q ss_pred             hhhhh---cccCccEEEEEEECC
Q psy10504        167 SMRDL---YIKNGQGFVVVYSLT  186 (286)
Q Consensus       167 ~~~~~---~~~~~d~vilv~d~~  186 (286)
                      .+...   .++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            12222   356799999999974

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG3886|consensus

Probab=99.09  E-value=2.8e-10  Score=94.81  Aligned_cols=159  Identities=20%  Similarity=0.297  Sum_probs=100.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh-----hhhhcccCc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS-----MRDLYIKNG  176 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~-----~~~~~~~~~  176 (286)
                      .-||+++|.+|+||||+-..+..+.  +.....+.+.+..-.++.+-|.-+ +.+||++||+.+-.     .....+++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~-LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLV-LNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhhe-eehhccCCcHHHHHHHHhhcchhhheeh
Confidence            4689999999999999854444322  122222333344444555555433 88999999995443     456788999


Q ss_pred             cEEEEEEECCCcccHHHHHHH---HHHHHHHhCCCCCcEEEEEeCCCCCCCC-CCCCHH----HHHHHHHhcCCCEEEEe
Q psy10504        177 QGFVVVYSLTNHHTFQDIKQM---KELITRVKGSERVPILLVANKLDLASHQ-REVPTL----DGQALAQSWGCPFIEAS  248 (286)
Q Consensus       177 d~vilv~d~~~~~s~~~~~~~---~~~i~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~----~~~~~~~~~~~~~~~vS  248 (286)
                      +++++|||++..+-..++..+   ++.+.+  ..|...+.+..+|+|+.... +.....    ..+.+....++.++++|
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~--~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts  160 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQ--NSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS  160 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHh--cCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence            999999999987655555544   344444  45678889999999997322 222122    22223333446778888


Q ss_pred             CCCCCcHHHHHHHHHHHh
Q psy10504        249 AKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       249 a~~~~gv~~l~~~i~~~i  266 (286)
                      ..+ +.+-+.+..+...+
T Consensus       161 iwD-etl~KAWS~iv~~l  177 (295)
T KOG3886|consen  161 IWD-ETLYKAWSSIVYNL  177 (295)
T ss_pred             hhh-HHHHHHHHHHHHhh
Confidence            765 44555555555544

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.08  E-value=9.1e-10  Score=89.49  Aligned_cols=109  Identities=18%  Similarity=0.255  Sum_probs=70.8

Q ss_pred             EEEECCCCCcHHHHHHHHhcCcCC-CccCCCccceEEEEEEEC-------------------------------------
Q psy10504        107 VVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDFYRKEIEVD-------------------------------------  148 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~-------------------------------------  148 (286)
                      |+|+|..++|||||+|+|++..+. ....+++..........+                                     
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE   80 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence            789999999999999999997643 233333321111111100                                     


Q ss_pred             -----------------CeEEEEEEEeCCCccc----chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCC
Q psy10504        149 -----------------KAPCVLEILDTAGTEQ----FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGS  207 (286)
Q Consensus       149 -----------------~~~~~l~l~DtpG~~~----~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~  207 (286)
                                       .....+.|+||||...    ...+...+++.+|++++|.++++..+-.+...+......    
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----  156 (168)
T PF00350_consen   81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP----  156 (168)
T ss_dssp             TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----
T ss_pred             ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----
Confidence                             0012488999999642    335677888999999999999997766655555444443    


Q ss_pred             CCCcEEEEEeCC
Q psy10504        208 ERVPILLVANKL  219 (286)
Q Consensus       208 ~~~piivv~nK~  219 (286)
                      .+..+++|.||.
T Consensus       157 ~~~~~i~V~nk~  168 (168)
T PF00350_consen  157 DKSRTIFVLNKA  168 (168)
T ss_dssp             TCSSEEEEEE-G
T ss_pred             CCCeEEEEEcCC
Confidence            244589999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.07  E-value=6.5e-10  Score=96.37  Aligned_cols=154  Identities=21%  Similarity=0.233  Sum_probs=97.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCc-----------CCCccCCCccceEE----------------EEEE---------
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGC-----------FMEKYDPTIEDFYR----------------KEIE---------  146 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~-----------~~~~~~~t~~~~~~----------------~~~~---------  146 (286)
                      +...|.|.|.||+|||||+..|...-           +.+..+.|.+....                ....         
T Consensus        50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS  129 (323)
T COG1703          50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS  129 (323)
T ss_pred             CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence            56789999999999999999987521           12223333221110                0000         


Q ss_pred             ---------ECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEe
Q psy10504        147 ---------VDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVAN  217 (286)
Q Consensus       147 ---------~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~n  217 (286)
                               ++.-.+.+.+++|.|--+..   ......+|.+++|.-..-++..+-++.-..++..         ++|+|
T Consensus       130 ~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------i~vIN  197 (323)
T COG1703         130 RATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------IIVIN  197 (323)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---------eeeEe
Confidence                     01122457788888754333   3345678999999888778777777765555555         89999


Q ss_pred             CCCCCCCCCCCCHHH-HHHHH------HhcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        218 KLDLASHQREVPTLD-GQALA------QSWGCPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       218 K~Dl~~~~~~~~~~~-~~~~~------~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      |.|..+.+....... ...+.      ..+..|++.+||.+|+|++++++.|.+....
T Consensus       198 KaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~  255 (323)
T COG1703         198 KADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF  255 (323)
T ss_pred             ccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence            999753322211111 11111      1233689999999999999999999987643

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.06  E-value=8.2e-10  Score=98.55  Aligned_cols=104  Identities=20%  Similarity=0.230  Sum_probs=64.1

Q ss_pred             EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHH
Q psy10504        152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL  231 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~  231 (286)
                      +.+.|+||+|.....   ......+|.++++.+..   +.+++......+.      ++|.++|+||+|+.+........
T Consensus       127 ~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~------~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       127 YDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGLM------EIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHHh------hhccEEEEEcccccchhHHHHHH
Confidence            568899999954222   23456678888775433   3344443333222      56889999999997332110000


Q ss_pred             -----HHHHHHH---hcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        232 -----DGQALAQ---SWGCPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       232 -----~~~~~~~---~~~~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                           ....+..   .+..+++++||+++.|+++++++|.+...
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                 0011111   12346999999999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.05  E-value=4e-09  Score=98.78  Aligned_cols=167  Identities=16%  Similarity=0.270  Sum_probs=110.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEEC--CeEEEEEEEeCCCcccchhhhhhcccCc---
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD--KAPCVLEILDTAGTEQFASMRDLYIKNG---  176 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~~l~l~DtpG~~~~~~~~~~~~~~~---  176 (286)
                      ..-.|+|+|..++|||||+.+|.+..   .+.++.+ ++....+..+  +...++.+|-..|...+..+....+...   
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~  100 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP  100 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence            34679999999999999999987632   2222322 2222222211  2234588999988666777666555432   


Q ss_pred             -cEEEEEEECCCcccH-HHHHHHHHHHHHHh------------------------------C------------------
Q psy10504        177 -QGFVVVYSLTNHHTF-QDIKQMKELITRVK------------------------------G------------------  206 (286)
Q Consensus       177 -d~vilv~d~~~~~s~-~~~~~~~~~i~~~~------------------------------~------------------  206 (286)
                       -.+|+|+|.+.|..+ +.+..|+..+..+.                              .                  
T Consensus       101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~  180 (472)
T PF05783_consen  101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE  180 (472)
T ss_pred             ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence             469999999998754 33444433222110                              0                  


Q ss_pred             -------------CCCCcEEEEEeCCCCCC---CCCC-------CCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        207 -------------SERVPILLVANKLDLAS---HQRE-------VPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       207 -------------~~~~piivv~nK~Dl~~---~~~~-------~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                                   .-++|++||++|+|...   .+..       ....-++.++..+|+.++.+|++...+++.|++.|.
T Consensus       181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~  260 (472)
T PF05783_consen  181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL  260 (472)
T ss_pred             cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence                         01489999999999742   1111       122335777888999999999999999999999999


Q ss_pred             HHhhcCCCC
Q psy10504        264 REMNFNPEK  272 (286)
Q Consensus       264 ~~i~~~~~~  272 (286)
                      +.+...+..
T Consensus       261 h~l~~~~f~  269 (472)
T PF05783_consen  261 HRLYGFPFK  269 (472)
T ss_pred             HHhccCCCC
Confidence            998776654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG1707|consensus

Probab=99.03  E-value=8.5e-09  Score=96.26  Aligned_cols=162  Identities=20%  Similarity=0.288  Sum_probs=117.8

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG  178 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~  178 (286)
                      ...+-+++.++|+.++|||.+++.+.++.+...+.++.. .+....+...+....+.+.|.+-. ....+...- ..||+
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv  498 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV  498 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence            344568999999999999999999999888776655544 333444555677777888888754 333333222 78999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCC-EEEEeCCCCCcHHH
Q psy10504        179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCP-FIEASAKNKTNVNE  257 (286)
Q Consensus       179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~gv~~  257 (286)
                      ++++||.+++.+++-+...+..-..   ..+.|+++|++|+|+.+..+...... ..++.+++++ -+.+|.++... .+
T Consensus       499 ~~~~YDsS~p~sf~~~a~v~~~~~~---~~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~  573 (625)
T KOG1707|consen  499 ACLVYDSSNPRSFEYLAEVYNKYFD---LYKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NE  573 (625)
T ss_pred             EEEecccCCchHHHHHHHHHHHhhh---ccCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-ch
Confidence            9999999999999888765554333   25899999999999985544444444 8889998853 45677774223 88


Q ss_pred             HHHHHHHHhhc
Q psy10504        258 MFAEIVREMNF  268 (286)
Q Consensus       258 l~~~i~~~i~~  268 (286)
                      +|..|+..+.-
T Consensus       574 lf~kL~~~A~~  584 (625)
T KOG1707|consen  574 LFIKLATMAQY  584 (625)
T ss_pred             HHHHHHHhhhC
Confidence            99999887644

>KOG0466|consensus

Probab=99.00  E-value=4e-10  Score=97.50  Aligned_cols=169  Identities=16%  Similarity=0.148  Sum_probs=108.3

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcC---cCCCccCCCcc----ceEEEEEE--------------------------E
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSG---CFMEKYDPTIE----DFYRKEIE--------------------------V  147 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~---~~~~~~~~t~~----~~~~~~~~--------------------------~  147 (286)
                      ...+++|.-+||..+||||++.++.+-   +|.......++    -...+.+.                          .
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~  114 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR  114 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence            346799999999999999998888761   11111100000    00000000                          0


Q ss_pred             CC------eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCC----cccHHHHHHHHHHHHHHhCCCCCcEEEEEe
Q psy10504        148 DK------APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTN----HHTFQDIKQMKELITRVKGSERVPILLVAN  217 (286)
Q Consensus       148 ~~------~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piivv~n  217 (286)
                      .+      .-.++.|+|+|||+-..+.........|+++++++.+.    |++.+.+...  ++.+     =+.++++-|
T Consensus       115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav--eiM~-----LkhiiilQN  187 (466)
T KOG0466|consen  115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV--EIMK-----LKHIIILQN  187 (466)
T ss_pred             CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH--HHhh-----hceEEEEec
Confidence            01      11368899999999888877777778899999999886    4444444321  2222     247899999


Q ss_pred             CCCCCCCCCC-CCHHHHHHHHHh---cCCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCC
Q psy10504        218 KLDLASHQRE-VPTLDGQALAQS---WGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNAS  276 (286)
Q Consensus       218 K~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~  276 (286)
                      |+|+..+... ...++++.+.+.   .+.|++++||.-+.|++.+.+.|..+++.....-..+
T Consensus       188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~  250 (466)
T KOG0466|consen  188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSP  250 (466)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCC
Confidence            9999733222 122223333332   2479999999999999999999999998766554433

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.99  E-value=3.4e-10  Score=96.82  Aligned_cols=150  Identities=21%  Similarity=0.228  Sum_probs=87.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCc-----------CCCccCCCcc----------------ceEEEEEEECC------
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGC-----------FMEKYDPTIE----------------DFYRKEIEVDK------  149 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~-----------~~~~~~~t~~----------------~~~~~~~~~~~------  149 (286)
                      +.+.|.|.|+||+|||||+++|....           +.+..+.|.+                ..+.......+      
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            45799999999999999999987511           1122222221                11111111111      


Q ss_pred             ------------eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEe
Q psy10504        150 ------------APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVAN  217 (286)
Q Consensus       150 ------------~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~n  217 (286)
                                  -.+.+.|++|.|--+-.   -....-+|.+++|....-++..+-++.-..++..         ++|+|
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD---------i~vVN  175 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD---------IFVVN  175 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S---------EEEEE
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc---------EEEEe
Confidence                        11447788888743222   2345679999999998888877777765555544         89999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHH-------hcCCCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504        218 KLDLASHQREVPTLDGQALAQ-------SWGCPFIEASAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       218 K~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~vSa~~~~gv~~l~~~i~~~i  266 (286)
                      |.|.+...+.  ..+.+....       .+..|++.+||.++.|++++++.|.+..
T Consensus       176 KaD~~gA~~~--~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  176 KADRPGADRT--VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             --SHHHHHHH--HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CCChHHHHHH--HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            9996522222  111121111       1235899999999999999999998854

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0082|consensus

Probab=98.98  E-value=3.3e-09  Score=94.92  Aligned_cols=129  Identities=15%  Similarity=0.104  Sum_probs=89.2

Q ss_pred             EEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCccc----------HHHHHHHHHHHHHHhCCCCC
Q psy10504        141 YRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHT----------FQDIKQMKELITRVKGSERV  210 (286)
Q Consensus       141 ~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s----------~~~~~~~~~~i~~~~~~~~~  210 (286)
                      ....+.+.+..  +.++|++||...+.-|.+.+.+++++++|+++++-..          +.+...+++.+.....-.+.
T Consensus       186 ~e~~F~~k~~~--f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~t  263 (354)
T KOG0082|consen  186 VEVEFTIKGLK--FRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANT  263 (354)
T ss_pred             eEEEEEeCCCc--eEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccC
Confidence            34455566655  8999999999999999999999999999999987321          22333455566655555689


Q ss_pred             cEEEEEeCCCCCCCC--------------CCCCHHHHHHHHH-----hcC-----CCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504        211 PILLVANKLDLASHQ--------------REVPTLDGQALAQ-----SWG-----CPFIEASAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       211 piivv~nK~Dl~~~~--------------~~~~~~~~~~~~~-----~~~-----~~~~~vSa~~~~gv~~l~~~i~~~i  266 (286)
                      ++|+..||.|+-...              ......++..+.+     .+.     +-++.+.|.+-.+|+.+|+.+.+.+
T Consensus       264 siiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~I  343 (354)
T KOG0082|consen  264 SIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTI  343 (354)
T ss_pred             cEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHH
Confidence            999999999985210              1122223322221     111     2256778999999999999999988


Q ss_pred             hcCCC
Q psy10504        267 NFNPE  271 (286)
Q Consensus       267 ~~~~~  271 (286)
                      ...+.
T Consensus       344 i~~nl  348 (354)
T KOG0082|consen  344 IQNNL  348 (354)
T ss_pred             HHHHH
Confidence            76543

>smart00053 DYNc Dynamin, GTPase

Probab=98.97  E-value=9.7e-09  Score=88.28  Aligned_cols=68  Identities=18%  Similarity=0.205  Sum_probs=44.5

Q ss_pred             EEEEEEeCCCccc-------------chhhhhhcccC-ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEe
Q psy10504        152 CVLEILDTAGTEQ-------------FASMRDLYIKN-GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVAN  217 (286)
Q Consensus       152 ~~l~l~DtpG~~~-------------~~~~~~~~~~~-~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~n  217 (286)
                      ..++++||||-..             ...+...|+++ .+.+++|+|++....-++.......+.    ..+.|+++|+|
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~~~~rti~ViT  200 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----PQGERTIGVIT  200 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----HcCCcEEEEEE
Confidence            3699999999642             11245567774 569999999876443333322222222    23789999999


Q ss_pred             CCCCCC
Q psy10504        218 KLDLAS  223 (286)
Q Consensus       218 K~Dl~~  223 (286)
                      |.|..+
T Consensus       201 K~D~~~  206 (240)
T smart00053      201 KLDLMD  206 (240)
T ss_pred             CCCCCC
Confidence            999873

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=1.5e-08  Score=90.75  Aligned_cols=84  Identities=19%  Similarity=0.240  Sum_probs=61.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECC----------------eEEEEEEEeCCCccc--
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDK----------------APCVLEILDTAGTEQ--  164 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----------------~~~~l~l~DtpG~~~--  164 (286)
                      .++++|+|.||||||||+|+++.... ...|+.++.+.......+..                ....+.|+|.+|.-.  
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47899999999999999999998765 47888887766555444321                123588999998432  


Q ss_pred             --chhhhhhc---ccCccEEEEEEECCC
Q psy10504        165 --FASMRDLY---IKNGQGFVVVYSLTN  187 (286)
Q Consensus       165 --~~~~~~~~---~~~~d~vilv~d~~~  187 (286)
                        -..+-..|   ++.+|+++.|+|+.+
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence              22233333   578999999999874

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.92  E-value=2.9e-09  Score=96.43  Aligned_cols=158  Identities=16%  Similarity=0.137  Sum_probs=78.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCC-CccCC-----CccceEEEEEEECCeEEEEEEEeCCCcccchhhhhh-----
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFM-EKYDP-----TIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDL-----  171 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~-----t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~-----  171 (286)
                      .+++|+|+|.+|+|||||+|+|.+-... ....+     |+.+.  ..+.....+ ++.+||.||......-...     
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~--~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~  110 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEP--TPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEV  110 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS---EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCC--eeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHc
Confidence            4589999999999999999999873221 11111     22222  222223222 2789999996533222222     


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC------CCCCCCCHHH----HHHHHH---
Q psy10504        172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA------SHQREVPTLD----GQALAQ---  238 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~------~~~~~~~~~~----~~~~~~---  238 (286)
                      -+...|.+|++.+-  .-+..++ .....+.+    .++|+.+|-||+|..      ...+....++    ++..+.   
T Consensus       111 ~~~~yD~fiii~s~--rf~~ndv-~La~~i~~----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L  183 (376)
T PF05049_consen  111 KFYRYDFFIIISSE--RFTENDV-QLAKEIQR----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL  183 (376)
T ss_dssp             TGGG-SEEEEEESS--S--HHHH-HHHHHHHH----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred             cccccCEEEEEeCC--CCchhhH-HHHHHHHH----cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence            34567877776652  2222222 22334444    288999999999961      1122222222    111111   


Q ss_pred             -hcC---CCEEEEeCCCC--CcHHHHHHHHHHHhhcCC
Q psy10504        239 -SWG---CPFIEASAKNK--TNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       239 -~~~---~~~~~vSa~~~--~gv~~l~~~i~~~i~~~~  270 (286)
                       ..+   .++|.+|+.+-  .+...|.+.+.+.++..+
T Consensus       184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred             HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence             123   36899999874  468888888888776643

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.88  E-value=4.7e-08  Score=85.84  Aligned_cols=55  Identities=18%  Similarity=0.126  Sum_probs=38.3

Q ss_pred             CcEEEEEeCCCCCCCCCCCCHHHHHHHHHh--cCCCEEEEeCCCCCcHHHHHHHHHHH
Q psy10504        210 VPILLVANKLDLASHQREVPTLDGQALAQS--WGCPFIEASAKNKTNVNEMFAEIVRE  265 (286)
Q Consensus       210 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~vSa~~~~gv~~l~~~i~~~  265 (286)
                      .+-++|+||+|+.+. ...+.+......+.  .+.+++.+||++|+|++++.+||.+.
T Consensus       231 ~ADIVVLNKiDLl~~-~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPY-LNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcc-cHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            466999999999721 11122222222222  35889999999999999999999874

>cd01859 MJ1464 MJ1464

Probab=98.86  E-value=1.1e-08  Score=82.39  Aligned_cols=96  Identities=17%  Similarity=0.188  Sum_probs=67.3

Q ss_pred             chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCE
Q psy10504        165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPF  244 (286)
Q Consensus       165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  244 (286)
                      |+.+..+..+++|++++|+|++++...++. .+...+.    ..++|+++|+||+|+.+. ..  ......+.+..+.++
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~----~~~~p~iiv~NK~Dl~~~-~~--~~~~~~~~~~~~~~~   73 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL----ELGKKLLIVLNKADLVPK-EV--LEKWKSIKESEGIPV   73 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH----hCCCcEEEEEEhHHhCCH-HH--HHHHHHHHHhCCCcE
Confidence            456778888999999999999886543331 2222221    236899999999998621 11  111112334456789


Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        245 IEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       245 ~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      +++||+++.|++++++.+.+.++.
T Consensus        74 ~~iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          74 VYVSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             EEEEccccccHHHHHHHHHHHHhh
Confidence            999999999999999999988764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.85  E-value=4.8e-08  Score=86.18  Aligned_cols=113  Identities=24%  Similarity=0.326  Sum_probs=66.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCcc---C-------CCc-cceEEEEEEECCeEEEEEEEeCCCcccc-------
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKY---D-------PTI-EDFYRKEIEVDKAPCVLEILDTAGTEQF-------  165 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~---~-------~t~-~~~~~~~~~~~~~~~~l~l~DtpG~~~~-------  165 (286)
                      .++|+++|.+|+|||||+|.|++.......   .       .+. .......+.-++..+.++++||||....       
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999999996543331   0       111 1222344566788889999999993211       


Q ss_pred             -----------hhh-------hhhcc--cCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        166 -----------ASM-------RDLYI--KNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       166 -----------~~~-------~~~~~--~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                                 ...       .+...  ...|++++.++.+... .-.++.    .+.+.  ...+++|-|+.|+|..
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~----~mk~L--s~~vNvIPvIaKaD~l  155 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE----FMKRL--SKRVNVIPVIAKADTL  155 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH----HHHHH--TTTSEEEEEESTGGGS
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH----HHHHh--cccccEEeEEeccccc
Confidence                       100       00011  2368999999987532 222222    22222  2268999999999986

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd01855 YqeH YqeH

Probab=98.84  E-value=1.7e-08  Score=83.97  Aligned_cols=95  Identities=18%  Similarity=0.135  Sum_probs=66.4

Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----H
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA-----Q  238 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~  238 (286)
                      .+..++..+++.+|++++|+|++++...     |...+..  ...++|+++|+||+|+.+.  .........+.     +
T Consensus        23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~--~~~~~~~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~   93 (190)
T cd01855          23 FILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRL--FGGNNPVILVGNKIDLLPK--DKNLVRIKNWLRAKAAA   93 (190)
T ss_pred             HHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHH--hcCCCcEEEEEEchhcCCC--CCCHHHHHHHHHHHHHh
Confidence            3577888999999999999999886421     2222221  1237899999999999632  22222222222     2


Q ss_pred             hcC---CCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        239 SWG---CPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       239 ~~~---~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      ..+   .+++++||+++.|+++++++|.+.++
T Consensus        94 ~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          94 GLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             hcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            233   26899999999999999999999875

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.79  E-value=9e-08  Score=91.66  Aligned_cols=119  Identities=20%  Similarity=0.201  Sum_probs=74.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC-CC-ccCCCccceEEEEEEECCeEEEEEEEeCCCcccch-------hh---hh
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF-ME-KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA-------SM---RD  170 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~-------~~---~~  170 (286)
                      ..++|+++|.+|+||||++|++++... .. ...+.++.........++..  +.++||||.....       .+   ..
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~--L~VIDTPGL~dt~~dq~~neeILk~Ik  194 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVK--IRVIDTPGLKSSASDQSKNEKILSSVK  194 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCce--EEEEECCCCCccccchHHHHHHHHHHH
Confidence            457899999999999999999999653 22 22233333333444455655  8999999966431       11   11


Q ss_pred             hccc--CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCC-CCcEEEEEeCCCCCC
Q psy10504        171 LYIK--NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSE-RVPILLVANKLDLAS  223 (286)
Q Consensus       171 ~~~~--~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piivv~nK~Dl~~  223 (286)
                      .++.  ..|++++|..++......+-..++..+....+.. =..+|||.|+.|..+
T Consensus       195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            2333  4799999998764333222224445554433211 236799999999863

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG1486|consensus

Probab=98.79  E-value=1.9e-07  Score=79.14  Aligned_cols=155  Identities=23%  Similarity=0.233  Sum_probs=106.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh-------hhhhccc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS-------MRDLYIK  174 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~-------~~~~~~~  174 (286)
                      -.-+|+++|-|.+|||||+..+....- ...|..|+-..+...+.+++..  +++.|.||..+-.+       ..-...+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEee
Confidence            457899999999999999999987543 5678888888888889999988  89999999653322       2234567


Q ss_pred             CccEEEEEEECCCcccHHHH-HHHHHHH----------------------------------------H-HHh-------
Q psy10504        175 NGQGFVVVYSLTNHHTFQDI-KQMKELI----------------------------------------T-RVK-------  205 (286)
Q Consensus       175 ~~d~vilv~d~~~~~s~~~~-~~~~~~i----------------------------------------~-~~~-------  205 (286)
                      .+|.+++|.|++..+.-..+ ..-++..                                        . .++       
T Consensus       139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl  218 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL  218 (364)
T ss_pred             cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence            89999999999875533211 1111111                                        0 000       


Q ss_pred             ----------------CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        206 ----------------GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       206 ----------------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                                      ...-++.+-|-||+|..      +.++...+++..+.-  -+|+.-..|++.+++.+-+.+.
T Consensus       219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~v------s~eevdrlAr~Pnsv--ViSC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQV------SIEEVDRLARQPNSV--VISCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             EecCCChHHHHHHHhccceEEEEEEEeecccee------cHHHHHHHhcCCCcE--EEEeccccCHHHHHHHHHHHhc
Confidence                            00124556666776643      556666777666653  4566777899999999988764

>KOG0410|consensus

Probab=98.74  E-value=1.3e-08  Score=88.95  Aligned_cols=151  Identities=15%  Similarity=0.160  Sum_probs=97.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCC-ccCCCccceEEEEEEECCeEEEEEEEeCCCcc---------cchhhhhhcc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFME-KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE---------QFASMRDLYI  173 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~---------~~~~~~~~~~  173 (286)
                      -+.|.++|-.|+|||||+++|....... +.-..+-|........+++.. +.+.||-|--         .|.+.. .-.
T Consensus       178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~-vlltDTvGFisdLP~~LvaAF~ATL-eeV  255 (410)
T KOG0410|consen  178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNF-VLLTDTVGFISDLPIQLVAAFQATL-EEV  255 (410)
T ss_pred             CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcE-EEEeechhhhhhCcHHHHHHHHHHH-HHH
Confidence            4679999999999999999999654432 222222233344444555543 6689999932         222222 224


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc----EEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC
Q psy10504        174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP----ILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASA  249 (286)
Q Consensus       174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p----iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa  249 (286)
                      ..+|.++-|.|+++|..-+.....+.-+... ..+..|    ++=|=||+|..+...+         .+.++  .+.+||
T Consensus       256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~~e---------~E~n~--~v~isa  323 (410)
T KOG0410|consen  256 AEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDEVE---------EEKNL--DVGISA  323 (410)
T ss_pred             hhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccccCc---------cccCC--cccccc
Confidence            6799999999999998666655555555553 222233    3445688887532221         11222  577999


Q ss_pred             CCCCcHHHHHHHHHHHhhc
Q psy10504        250 KNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       250 ~~~~gv~~l~~~i~~~i~~  268 (286)
                      ++|+|++++.+.+-.++..
T Consensus       324 ltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  324 LTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             ccCccHHHHHHHHHHHhhh
Confidence            9999999999988777654

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.73  E-value=1.6e-07  Score=83.36  Aligned_cols=88  Identities=18%  Similarity=0.173  Sum_probs=67.7

Q ss_pred             hhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEe
Q psy10504        170 DLYIKNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEAS  248 (286)
Q Consensus       170 ~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vS  248 (286)
                      +..+.++|.+++|+|++++. ++..+..|+..+..    .++|+++|+||+|+.+. .  ............+.+++++|
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~-~--~~~~~~~~~~~~g~~v~~vS  145 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDD-E--EEELELVEALALGYPVLAVS  145 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCCh-H--HHHHHHHHHHhCCCeEEEEE
Confidence            44588999999999999988 77888887776654    27899999999999632 1  11222333445778999999


Q ss_pred             CCCCCcHHHHHHHHHH
Q psy10504        249 AKNKTNVNEMFAEIVR  264 (286)
Q Consensus       249 a~~~~gv~~l~~~i~~  264 (286)
                      |+++.|++++++.+..
T Consensus       146 A~~g~gi~~L~~~L~~  161 (287)
T cd01854         146 AKTGEGLDELREYLKG  161 (287)
T ss_pred             CCCCccHHHHHhhhcc
Confidence            9999999999887764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0465|consensus

Probab=98.73  E-value=3.8e-08  Score=92.30  Aligned_cols=115  Identities=16%  Similarity=0.100  Sum_probs=82.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCC------CccCCCcc-----------ceEEEEEEECCeEEEEEEEeCCCcccc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFM------EKYDPTIE-----------DFYRKEIEVDKAPCVLEILDTAGTEQF  165 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~------~~~~~t~~-----------~~~~~~~~~~~~~~~l~l~DtpG~~~~  165 (286)
                      +.-+|.+.-|-++||||+-.+.+...-.      .....++.           .....-.......+++.++|||||.+|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            4457999999999999998887651100      00111111           111111222333566999999999999


Q ss_pred             hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      .--..+.++..|++|+++|+..+..-+...-|.+.-..     ++|-+..+||+|..
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry-----~vP~i~FiNKmDRm  169 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRY-----NVPRICFINKMDRM  169 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhc-----CCCeEEEEehhhhc
Confidence            98889999999999999999998877777777665444     89999999999975

>KOG0467|consensus

Probab=98.72  E-value=3.9e-08  Score=94.19  Aligned_cols=115  Identities=17%  Similarity=0.237  Sum_probs=80.9

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhc--CcCCCccCCCcc-------------ceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVS--GCFMEKYDPTIE-------------DFYRKEIEVDKAPCVLEILDTAGTEQFA  166 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~~~~~t~~-------------~~~~~~~~~~~~~~~l~l~DtpG~~~~~  166 (286)
                      ...-+++++.|.++|||||.+.|..  +.+.+.-.++++             +.....+..-.+.+.+.++|+|||-+|.
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~   86 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS   86 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence            3456799999999999999999975  222222222221             1111122333455679999999999999


Q ss_pred             hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCC
Q psy10504        167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL  221 (286)
Q Consensus       167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl  221 (286)
                      +......+-+|++++++|+..+...+...-..+....     +...++|+||+|.
T Consensus        87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~-----~~~~~lvinkidr  136 (887)
T KOG0467|consen   87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE-----GLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc-----cCceEEEEehhhh
Confidence            9999999999999999999987755554433333333     6677999999993

>KOG2486|consensus

Probab=98.72  E-value=1.9e-08  Score=86.34  Aligned_cols=158  Identities=15%  Similarity=0.124  Sum_probs=95.5

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCC-CccceEEEEEEECCeEEEEEEEeCCC----------cccchhh
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDP-TIEDFYRKEIEVDKAPCVLEILDTAG----------TEQFASM  168 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~l~DtpG----------~~~~~~~  168 (286)
                      +..+.+.++++|.+|+|||||+|.+........... ..+.+.......-+..  +.++|.||          ..++..+
T Consensus       132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~--~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKS--WYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccce--EEEEecCCcccccCCccCcchHhHh
Confidence            345779999999999999999999998655443332 4444444444334444  77899999          2245556


Q ss_pred             hhhcccCcc---EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC---CCCHHHHHH----HHH
Q psy10504        169 RDLYIKNGQ---GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR---EVPTLDGQA----LAQ  238 (286)
Q Consensus       169 ~~~~~~~~d---~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~----~~~  238 (286)
                      ...|+.+.+   -+++.+|++-+..--+.     ....+....++|..+|.||+|......   .-....+..    +..
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~-----~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~  284 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVPIQPTDN-----PEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR  284 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCCCCCCCh-----HHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence            666665543   35566666654322222     222222334899999999999863211   001111111    111


Q ss_pred             h---cCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504        239 S---WGCPFIEASAKNKTNVNEMFAEIVR  264 (286)
Q Consensus       239 ~---~~~~~~~vSa~~~~gv~~l~~~i~~  264 (286)
                      .   ...|.+.+|+.++.|+++|.-.+.+
T Consensus       285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             cceeccCCceeeecccccCceeeeeehhh
Confidence            1   1145567999999999988655544

>PRK00098 GTPase RsgA; Reviewed

Probab=98.68  E-value=2.8e-07  Score=82.17  Aligned_cols=87  Identities=22%  Similarity=0.259  Sum_probs=63.5

Q ss_pred             cccCccEEEEEEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC
Q psy10504        172 YIKNGQGFVVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAK  250 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~  250 (286)
                      .+.++|.+++|+|++++...... ..|+..+..    .++|+++|+||+|+.+ ... .........+..+.+++++||+
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~-~~~-~~~~~~~~~~~~g~~v~~vSA~  150 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLD-DLE-EARELLALYRAIGYDVLELSAK  150 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCC-CHH-HHHHHHHHHHHCCCeEEEEeCC
Confidence            46899999999999988765543 556555443    3789999999999962 221 1222334445667899999999


Q ss_pred             CCCcHHHHHHHHHH
Q psy10504        251 NKTNVNEMFAEIVR  264 (286)
Q Consensus       251 ~~~gv~~l~~~i~~  264 (286)
                      ++.|++++++.+..
T Consensus       151 ~g~gi~~L~~~l~g  164 (298)
T PRK00098        151 EGEGLDELKPLLAG  164 (298)
T ss_pred             CCccHHHHHhhccC
Confidence            99999999987743

>KOG1143|consensus

Probab=98.66  E-value=1.5e-07  Score=83.86  Aligned_cols=155  Identities=21%  Similarity=0.247  Sum_probs=94.5

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccC------------------CCc-----c-ceEEEEEEEC----------
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYD------------------PTI-----E-DFYRKEIEVD----------  148 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~------------------~t~-----~-~~~~~~~~~~----------  148 (286)
                      -.++++++|-.++|||||+--|..+......-                  ..+     + +.....+.+.          
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            46899999999999999987776644432210                  000     0 1111111111          


Q ss_pred             CeEEEEEEEeCCCcccchhhhhhcccC--ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-
Q psy10504        149 KAPCVLEILDTAGTEQFASMRDLYIKN--GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ-  225 (286)
Q Consensus       149 ~~~~~l~l~DtpG~~~~~~~~~~~~~~--~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-  225 (286)
                      .....++|+|.+||.+|.......+..  .|..++|++++.+..... ++-+-.+..    -++|+.++++|+|+.+.. 
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~  320 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQG  320 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchh
Confidence            122348999999999999877666655  688999999987643322 222233333    289999999999997331 


Q ss_pred             --C--------------------CCCHHHHHHHHHh----cCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        226 --R--------------------EVPTLDGQALAQS----WGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       226 --~--------------------~~~~~~~~~~~~~----~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                        +                    .....+.-..+.+    .-+|++.+|..+|+|++-+...+
T Consensus       321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL  383 (591)
T KOG1143|consen  321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL  383 (591)
T ss_pred             HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence              0                    0111111111111    11689999999999998664433

>KOG3887|consensus

Probab=98.65  E-value=8e-08  Score=80.88  Aligned_cols=163  Identities=13%  Similarity=0.197  Sum_probs=95.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccce-EEEEEEECCeEEEEEEEeCCCcccchh---hhhhcccCccEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDF-YRKEIEVDKAPCVLEILDTAGTEQFAS---MRDLYIKNGQGFV  180 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~DtpG~~~~~~---~~~~~~~~~d~vi  180 (286)
                      ++|++||...+||||+-.-.... ..+..+--.+.. ....-.+.+.-+.+++||.|||-.+..   -....++.+.+.+
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhk-MsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             ceEEEEeecccCcchhhheeeec-cCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            56999999999999985444332 222111100000 000111223446699999999876543   2345678999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHH-HHhCCCCCcEEEEEeCCCCCCCCCCCCH------HHHHHHHH----hcCCCEEEEeC
Q psy10504        181 VVYSLTNHHTFQDIKQMKELIT-RVKGSERVPILLVANKLDLASHQREVPT------LDGQALAQ----SWGCPFIEASA  249 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~-~~~~~~~~piivv~nK~Dl~~~~~~~~~------~~~~~~~~----~~~~~~~~vSa  249 (286)
                      +|+|+.|. -.+.+..+...+. .++-.|++.+=|.+.|.|...++..+..      ...+.++.    ...+.++.+|.
T Consensus       107 fvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI  185 (347)
T KOG3887|consen  107 FVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI  185 (347)
T ss_pred             EEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence            99999764 2233333323332 3346688999999999998743322111      11111211    22255777887


Q ss_pred             CCCCcHHHHHHHHHHHh-hcCC
Q psy10504        250 KNKTNVNEMFAEIVREM-NFNP  270 (286)
Q Consensus       250 ~~~~gv~~l~~~i~~~i-~~~~  270 (286)
                      .+ ..+-+.|..+.+++ ++.+
T Consensus       186 yD-HSIfEAFSkvVQkLipqLp  206 (347)
T KOG3887|consen  186 YD-HSIFEAFSKVVQKLIPQLP  206 (347)
T ss_pred             cc-hHHHHHHHHHHHHHhhhch
Confidence            65 67888888887765 4444

>PRK12288 GTPase RsgA; Reviewed

Probab=98.64  E-value=1.5e-07  Score=85.45  Aligned_cols=90  Identities=16%  Similarity=0.163  Sum_probs=67.3

Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504        172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN  251 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  251 (286)
                      ...++|.+++|++.+...++..+..|+.....    .++|.++|+||+|+.+..............+..+.+++++||++
T Consensus       117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~t  192 (347)
T PRK12288        117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHT  192 (347)
T ss_pred             EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            35679999999999888888888888765443    37899999999999732211111222233345678999999999


Q ss_pred             CCcHHHHHHHHHHH
Q psy10504        252 KTNVNEMFAEIVRE  265 (286)
Q Consensus       252 ~~gv~~l~~~i~~~  265 (286)
                      +.|++++++.|...
T Consensus       193 g~GideL~~~L~~k  206 (347)
T PRK12288        193 GEGLEELEAALTGR  206 (347)
T ss_pred             CcCHHHHHHHHhhC
Confidence            99999999998763

>PRK12289 GTPase RsgA; Reviewed

Probab=98.62  E-value=2e-07  Score=84.68  Aligned_cols=93  Identities=17%  Similarity=0.249  Sum_probs=66.6

Q ss_pred             hhhhhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCE
Q psy10504        166 ASMRDLYIKNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPF  244 (286)
Q Consensus       166 ~~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  244 (286)
                      ..+.+..+.++|.+++|+|+.++. ....+..|+.....    .++|+++|+||+|+.+. ..  ..........++.++
T Consensus        80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~-~~--~~~~~~~~~~~g~~v  152 (352)
T PRK12289         80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSP-TE--QQQWQDRLQQWGYQP  152 (352)
T ss_pred             cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCCh-HH--HHHHHHHHHhcCCeE
Confidence            334555689999999999999875 34455666554432    37899999999999622 11  122222334678889


Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy10504        245 IEASAKNKTNVNEMFAEIVRE  265 (286)
Q Consensus       245 ~~vSa~~~~gv~~l~~~i~~~  265 (286)
                      +++||+++.|++++++.+...
T Consensus       153 ~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        153 LFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EEEEcCCCCCHHHHhhhhccc
Confidence            999999999999999988653

>KOG0464|consensus

Probab=98.60  E-value=8e-09  Score=92.84  Aligned_cols=130  Identities=15%  Similarity=0.203  Sum_probs=94.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc--------CcCCCccCCCcc-----------ceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS--------GCFMEKYDPTIE-----------DFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~--------~~~~~~~~~t~~-----------~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      +--+|.++.+.++||||...+++.        +.+...  .|.+           ...+.-+.++.+..++.++|||||-
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddg--dtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv  113 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDG--DTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV  113 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCC--chHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence            345799999999999999888765        111111  1111           3344455566666669999999999


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC  242 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  242 (286)
                      +|+--..+.++..|+++.|||++.+...+.+.-|.+.-..     ++|-+..+||+|+....-+   ...+.+.++++.
T Consensus       114 df~leverclrvldgavav~dasagve~qtltvwrqadk~-----~ip~~~finkmdk~~anfe---~avdsi~ekl~a  184 (753)
T KOG0464|consen  114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKF-----KIPAHCFINKMDKLAANFE---NAVDSIEEKLGA  184 (753)
T ss_pred             eEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcccc-----CCchhhhhhhhhhhhhhhh---hHHHHHHHHhCC
Confidence            9999899999999999999999998888888777665433     8899999999998733322   223444555554

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.58  E-value=2.9e-07  Score=85.23  Aligned_cols=122  Identities=14%  Similarity=0.186  Sum_probs=81.1

Q ss_pred             EEEEE-CCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc----------cHHHHHHHHHHHHHHhCCCCCc
Q psy10504        143 KEIEV-DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH----------TFQDIKQMKELITRVKGSERVP  211 (286)
Q Consensus       143 ~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~p  211 (286)
                      ..+.+ ++..  +.++|++|+...+.-|..++.+.+++|+|+++++-.          .+.+....+..+.......+.|
T Consensus       228 ~~f~~~~~~~--~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~  305 (389)
T PF00503_consen  228 IDFNFSGSRK--FRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTP  305 (389)
T ss_dssp             EEEEE-TTEE--EEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSE
T ss_pred             EEEEeecccc--cceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCc
Confidence            34445 4444  899999999999999999999999999999987522          2444444555555544445899


Q ss_pred             EEEEEeCCCCCC----CCC-----------C--CCHHHHHHHHHh-c-----------CCCEEEEeCCCCCcHHHHHHHH
Q psy10504        212 ILLVANKLDLAS----HQR-----------E--VPTLDGQALAQS-W-----------GCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       212 iivv~nK~Dl~~----~~~-----------~--~~~~~~~~~~~~-~-----------~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      ++|++||.|+..    ...           .  .+......+... +           .+-++.++|.+.+.++.+|+.+
T Consensus       306 iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v  385 (389)
T PF00503_consen  306 IILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAV  385 (389)
T ss_dssp             EEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHH
T ss_pred             eEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHh
Confidence            999999999631    110           0  122333222221 1           1235688999999999999988


Q ss_pred             HHHh
Q psy10504        263 VREM  266 (286)
Q Consensus       263 ~~~i  266 (286)
                      .+.+
T Consensus       386 ~~~i  389 (389)
T PF00503_consen  386 KDII  389 (389)
T ss_dssp             HHHH
T ss_pred             cCcC
Confidence            7754

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0459|consensus

Probab=98.55  E-value=1.1e-07  Score=85.27  Aligned_cols=158  Identities=18%  Similarity=0.173  Sum_probs=97.5

Q ss_pred             CCCcceEEEEEECCCCCcHHHHHHHHhcC--cCC------------------------------CccCCCccceEEEEEE
Q psy10504         99 SFTMREFKVVVLGSGGVGKSALTVQFVSG--CFM------------------------------EKYDPTIEDFYRKEIE  146 (286)
Q Consensus        99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~------------------------------~~~~~t~~~~~~~~~~  146 (286)
                      .++..+++++++|+.++||||+-..+...  .+.                              ....+.+.......+.
T Consensus        74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE  153 (501)
T KOG0459|consen   74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE  153 (501)
T ss_pred             CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence            44567899999999999999984444320  000                              0000111112222233


Q ss_pred             ECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc---cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        147 VDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH---TFQDIKQMKELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       147 ~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                      ....  ++++.|+|||..|-...-.....||..++|+++...+   .|+.--+......-++...-..+|+++||+|-+.
T Consensus       154 te~~--~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPt  231 (501)
T KOG0459|consen  154 TENK--RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT  231 (501)
T ss_pred             ecce--eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCc
Confidence            3333  4999999999999988888888999999999996532   3333333333333333344568899999999763


Q ss_pred             CCCCCCHHHH-------HHHHHhcC------CCEEEEeCCCCCcHHHHHH
Q psy10504        224 HQREVPTLDG-------QALAQSWG------CPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       224 ~~~~~~~~~~-------~~~~~~~~------~~~~~vSa~~~~gv~~l~~  260 (286)
                      .  .++.+..       ..+....|      ..+++||..+|.++++..+
T Consensus       232 v--nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  232 V--NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             c--CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            2  2222222       22222222      4589999999999988654

>KOG0463|consensus

Probab=98.53  E-value=8.2e-07  Score=79.25  Aligned_cols=152  Identities=19%  Similarity=0.231  Sum_probs=87.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCC------------------ccCCCcc---------------------ceEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFME------------------KYDPTIE---------------------DFYRK  143 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~------------------~~~~t~~---------------------~~~~~  143 (286)
                      -+.+|+++|..++|||||+--|..+....                  ......+                     .....
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            46899999999999999976665432221                  1111111                     00001


Q ss_pred             EEEECCeEEEEEEEeCCCcccchhhhhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCC
Q psy10504        144 EIEVDKAPCVLEILDTAGTEQFASMRDLYI--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL  221 (286)
Q Consensus       144 ~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl  221 (286)
                      .+- .+....++|+|.+||++|-...-...  .-.|..++++-++.+. +--.++.+.....    -++|+.+|.||+|.
T Consensus       212 kIc-e~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALa----L~VPVfvVVTKIDM  285 (641)
T KOG0463|consen  212 KIC-EDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALA----LHVPVFVVVTKIDM  285 (641)
T ss_pred             eec-cccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhh----hcCcEEEEEEeecc
Confidence            111 11223489999999999987554433  3468888888776542 1111121222122    27899999999998


Q ss_pred             CCCCCCCCHHHH---HHHHHh--------------------------cCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        222 ASHQREVPTLDG---QALAQS--------------------------WGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       222 ~~~~~~~~~~~~---~~~~~~--------------------------~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      ..++  +-++..   ..+.+.                          .-||+|.+|-.+|+|++-+...+
T Consensus       286 CPAN--iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL  353 (641)
T KOG0463|consen  286 CPAN--ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL  353 (641)
T ss_pred             CcHH--HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence            6322  111111   111111                          12678999999999997664443

>KOG1954|consensus

Probab=98.50  E-value=8.9e-07  Score=78.89  Aligned_cols=116  Identities=15%  Similarity=0.230  Sum_probs=79.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCC---ccCCCccceEEEEEEE-----CCeE-----------------------
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFME---KYDPTIEDFYRKEIEV-----DKAP-----------------------  151 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~---~~~~t~~~~~~~~~~~-----~~~~-----------------------  151 (286)
                      ..+-|+++|.-..||||+++.|+...++.   ...||+..++......     +|..                       
T Consensus        57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf  136 (532)
T KOG1954|consen   57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF  136 (532)
T ss_pred             cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence            45679999999999999999999987764   3345554333322211     1110                       


Q ss_pred             ----------EEEEEEeCCCcc-----------cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCC
Q psy10504        152 ----------CVLEILDTAGTE-----------QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERV  210 (286)
Q Consensus       152 ----------~~l~l~DtpG~~-----------~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~  210 (286)
                                =.++++||||.-           .|......+...+|.++++||+...+--++....+..+.-.    .-
T Consensus       137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----Ed  212 (532)
T KOG1954|consen  137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----ED  212 (532)
T ss_pred             HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cc
Confidence                      158999999933           23445566788999999999998766555555555554432    34


Q ss_pred             cEEEEEeCCCCC
Q psy10504        211 PILLVANKLDLA  222 (286)
Q Consensus       211 piivv~nK~Dl~  222 (286)
                      .+-||.||.|..
T Consensus       213 kiRVVLNKADqV  224 (532)
T KOG1954|consen  213 KIRVVLNKADQV  224 (532)
T ss_pred             eeEEEecccccc
Confidence            677889999986

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.49  E-value=3.2e-07  Score=72.60  Aligned_cols=52  Identities=19%  Similarity=0.199  Sum_probs=37.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCc--cCCCccceEEEEEEECCeEEEEEEEeCCCc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEK--YDPTIEDFYRKEIEVDKAPCVLEILDTAGT  162 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~  162 (286)
                      +++++|.+|+|||||+|++.+......  ..+++.  ....+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTK--HFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCccc--ceEEEEeCC---CEEEEECCCc
Confidence            899999999999999999998765322  222222  233444544   2789999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.49  E-value=5.8e-07  Score=82.23  Aligned_cols=95  Identities=22%  Similarity=0.298  Sum_probs=69.6

Q ss_pred             cccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHH----HHH
Q psy10504        162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQ----ALA  237 (286)
Q Consensus       162 ~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~----~~~  237 (286)
                      .++|..+...+++.++++++|+|+.|..     ..|...+....  .+.|+++|+||+|+.+.  ........    ...
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~--~~~piilV~NK~DLl~k--~~~~~~~~~~l~~~~  120 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV--GGNPVLLVGNKIDLLPK--SVNLSKIKEWMKKRA  120 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh--CCCCEEEEEEchhhCCC--CCCHHHHHHHHHHHH
Confidence            5578888899999999999999998754     23444444432  26799999999999632  22222222    335


Q ss_pred             HhcCC---CEEEEeCCCCCcHHHHHHHHHHH
Q psy10504        238 QSWGC---PFIEASAKNKTNVNEMFAEIVRE  265 (286)
Q Consensus       238 ~~~~~---~~~~vSa~~~~gv~~l~~~i~~~  265 (286)
                      +..++   .++.+||++|.|++++++.|.+.
T Consensus       121 k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       121 KELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            55665   48999999999999999999765

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.46  E-value=1.6e-06  Score=77.39  Aligned_cols=114  Identities=26%  Similarity=0.424  Sum_probs=69.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCcc----------CCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchh----
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKY----------DPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFAS----  167 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~----------~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~----  167 (286)
                      -.+.|.++|..|.|||||+|.|++.......          .+++. ......+.-++....++++||||--++-.    
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            4689999999999999999999986443321          11111 22233445567788899999999322111    


Q ss_pred             ----------hhhhc------------c--cCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        168 ----------MRDLY------------I--KNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       168 ----------~~~~~------------~--~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                                ..+.|            +  ...|++++.+..+... +.-++..+ ..+     ...+.+|-|+-|+|..
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~M-k~l-----s~~vNlIPVI~KaD~l  175 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAM-KRL-----SKRVNLIPVIAKADTL  175 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHH-HHH-----hcccCeeeeeeccccC
Confidence                      01111            1  2257888888766532 22222221 122     2367889999999986

>KOG0448|consensus

Probab=98.43  E-value=1.9e-06  Score=82.09  Aligned_cols=145  Identities=20%  Similarity=0.256  Sum_probs=85.2

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCcc-CCCccceEE-------------------------------------
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKY-DPTIEDFYR-------------------------------------  142 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~-~~t~~~~~~-------------------------------------  142 (286)
                      .....||+|.|+.++||||++|+++...+.+.. -+++..+..                                     
T Consensus       106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~  185 (749)
T KOG0448|consen  106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD  185 (749)
T ss_pred             hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence            446789999999999999999999886554332 222211100                                     


Q ss_pred             ------EEEEECCeE-----EEEEEEeCCCcc---cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCC
Q psy10504        143 ------KEIEVDKAP-----CVLEILDTAGTE---QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSE  208 (286)
Q Consensus       143 ------~~~~~~~~~-----~~l~l~DtpG~~---~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~  208 (286)
                            ..+.++...     -.+.++|.||-+   ........+..++|++|+|..+.+.-+..+ ++.+.....    .
T Consensus       186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~----~  260 (749)
T KOG0448|consen  186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE----E  260 (749)
T ss_pred             cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc----c
Confidence                  011111110     147789999955   556667788899999999999887543332 333333332    1


Q ss_pred             CCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc--------CCCEEEEeCCC
Q psy10504        209 RVPILLVANKLDLASHQREVPTLDGQALAQSW--------GCPFIEASAKN  251 (286)
Q Consensus       209 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~vSa~~  251 (286)
                      +..+.|+-||+|...++++-....... ...+        .-.+++|||+.
T Consensus       261 KpniFIlnnkwDasase~ec~e~V~~Q-i~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  261 KPNIFILNNKWDASASEPECKEDVLKQ-IHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             CCcEEEEechhhhhcccHHHHHHHHHH-HHhcCcccHhhhcCeeEEEeccc
Confidence            334556668889873333221111111 1122        23588999875

>cd01858 NGP_1 NGP-1

Probab=98.41  E-value=7.8e-07  Score=71.66  Aligned_cols=92  Identities=14%  Similarity=0.127  Sum_probs=58.7

Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC
Q psy10504        171 LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAK  250 (286)
Q Consensus       171 ~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~  250 (286)
                      ..+.++|++++|+|++++.... ...+...+..  ...++|+++|+||+|+.+. .. .......+.+.+...++.+||+
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~--~~~~~p~ilVlNKiDl~~~-~~-~~~~~~~~~~~~~~~~~~iSa~   78 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKK--EKPHKHLIFVLNKCDLVPT-WV-TARWVKILSKEYPTIAFHASIN   78 (157)
T ss_pred             HhhhhCCEEEEEEECCCCcccc-CHHHHHHHHh--ccCCCCEEEEEEchhcCCH-HH-HHHHHHHHhcCCcEEEEEeecc
Confidence            3567899999999999874321 1222223322  2336899999999999622 11 1112222333222335789999


Q ss_pred             CCCcHHHHHHHHHHHhh
Q psy10504        251 NKTNVNEMFAEIVREMN  267 (286)
Q Consensus       251 ~~~gv~~l~~~i~~~i~  267 (286)
                      ++.|++++.+.+.+.+.
T Consensus        79 ~~~~~~~L~~~l~~~~~   95 (157)
T cd01858          79 NPFGKGSLIQLLRQFSK   95 (157)
T ss_pred             ccccHHHHHHHHHHHHh
Confidence            99999999999987653

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.38  E-value=1.1e-06  Score=71.80  Aligned_cols=99  Identities=16%  Similarity=0.115  Sum_probs=64.4

Q ss_pred             CCCcc-cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy10504        159 TAGTE-QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA  237 (286)
Q Consensus       159 tpG~~-~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~  237 (286)
                      .|||- +........++++|.+++|+|++++....+. .+...      ..++|+++|+||+|+.+ ...  ........
T Consensus         2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~------~~~k~~ilVlNK~Dl~~-~~~--~~~~~~~~   71 (171)
T cd01856           2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI------LGNKPRIIVLNKADLAD-PKK--TKKWLKYF   71 (171)
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH------hcCCCEEEEEehhhcCC-hHH--HHHHHHHH
Confidence            45543 3333446678899999999999876543221 11111      12579999999999962 111  11111222


Q ss_pred             HhcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        238 QSWGCPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       238 ~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      +..+..++.+||+++.|++++.+.+...++
T Consensus        72 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          72 ESKGEKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             HhcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence            233456899999999999999999998764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.38  E-value=1.5e-06  Score=69.80  Aligned_cols=84  Identities=15%  Similarity=0.074  Sum_probs=55.6

Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHH
Q psy10504        177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVN  256 (286)
Q Consensus       177 d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~  256 (286)
                      |++++|+|++++.+....  ++..  ......++|+++|+||+|+.+. ... ......+....+.+++.+||+++.|++
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~--~~~~~~~~p~IiVlNK~Dl~~~-~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~   74 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIER--VLIKEKGKKLILVLNKADLVPK-EVL-RKWLAYLRHSYPTIPFKISATNGQGIE   74 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHH--HHHhcCCCCEEEEEechhcCCH-HHH-HHHHHHHHhhCCceEEEEeccCCcChh
Confidence            689999999987655432  2221  1112247899999999999621 110 111123333445678999999999999


Q ss_pred             HHHHHHHHHh
Q psy10504        257 EMFAEIVREM  266 (286)
Q Consensus       257 ~l~~~i~~~i  266 (286)
                      ++.+.+.+..
T Consensus        75 ~L~~~i~~~~   84 (155)
T cd01849          75 KKESAFTKQT   84 (155)
T ss_pred             hHHHHHHHHh
Confidence            9999987753

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01858 NGP_1 NGP-1

Probab=98.37  E-value=1.1e-06  Score=70.79  Aligned_cols=55  Identities=18%  Similarity=0.244  Sum_probs=37.5

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT  162 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~  162 (286)
                      ...+|+++|.+|+|||||+|++.+...  ....++++....  .+..+ ..  +.++||||.
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~--~~~~~-~~--~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQ--YITLM-KR--IYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEE--EEEcC-CC--EEEEECcCC
Confidence            457899999999999999999998544  334444443222  22222 23  678999993

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.34  E-value=1.3e-06  Score=71.63  Aligned_cols=55  Identities=22%  Similarity=0.286  Sum_probs=38.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT  162 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~  162 (286)
                      ..++++++|.+|+|||||+|++.+...  .+..++++......  ..+ ..  +.++||||.
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~--~~~-~~--~~l~DtPGi  172 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEV--HLD-KK--VKLLDSPGI  172 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEE--EeC-CC--EEEEECcCC
Confidence            458999999999999999999998544  33444454433332  232 23  789999993

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.34  E-value=1.7e-06  Score=76.42  Aligned_cols=101  Identities=17%  Similarity=0.071  Sum_probs=66.8

Q ss_pred             CCCccc-chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy10504        159 TAGTEQ-FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA  237 (286)
Q Consensus       159 tpG~~~-~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~  237 (286)
                      .|||-. ........+..+|++++|+|+.++.+.++. . +....     .++|+++|+||+|+.+. ..  ........
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~-i~~~l-----~~kp~IiVlNK~DL~~~-~~--~~~~~~~~   73 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-M-IDEIR-----GNKPRLIVLNKADLADP-AV--TKQWLKYF   73 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-h-HHHHH-----CCCCEEEEEEccccCCH-HH--HHHHHHHH
Confidence            466642 223345677899999999999887554332 1 11111     26799999999999621 11  11111122


Q ss_pred             HhcCCCEEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504        238 QSWGCPFIEASAKNKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       238 ~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~  269 (286)
                      +..+.+++.+||+++.|++++.+.+.+.+++.
T Consensus        74 ~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        74 EEKGIKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             HHcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            23456789999999999999999998887654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG1547|consensus

Probab=98.32  E-value=4.5e-06  Score=70.45  Aligned_cols=142  Identities=19%  Similarity=0.246  Sum_probs=78.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCC---------ccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccc--------
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFME---------KYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQF--------  165 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~---------~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~--------  165 (286)
                      .++|.++|.+|.|||||+|.+....+..         .++.|+. ...+..+.-++.+.+++++||||-.++        
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            5899999999999999999998743322         1222222 122234556778888999999992211        


Q ss_pred             ----------h--------hhhhhcccC--ccEEEEEEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCC-
Q psy10504        166 ----------A--------SMRDLYIKN--GQGFVVVYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLAS-  223 (286)
Q Consensus       166 ----------~--------~~~~~~~~~--~d~vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~-  223 (286)
                                .        ..+...+.+  .+++++.+..+.. ++..+. ..+..+.+     -+.++-|+-|.|-.. 
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~-----vvNvvPVIakaDtlTl  199 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE-----VVNVVPVIAKADTLTL  199 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh-----hheeeeeEeecccccH
Confidence                      1        112333444  4567777766653 222221 12222222     456788889999641 


Q ss_pred             CCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504        224 HQREVPTLDGQALAQSWGCPFIEASAKN  251 (286)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~  251 (286)
                      +++..-.+.++.-...+++.+++--+-+
T Consensus       200 eEr~~FkqrI~~el~~~~i~vYPq~~fd  227 (336)
T KOG1547|consen  200 EERSAFKQRIRKELEKHGIDVYPQDSFD  227 (336)
T ss_pred             HHHHHHHHHHHHHHHhcCcccccccccc
Confidence            1111112223333445566666554444

>cd01856 YlqF YlqF

Probab=98.30  E-value=1.8e-06  Score=70.61  Aligned_cols=56  Identities=23%  Similarity=0.317  Sum_probs=38.9

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCC--ccCCCccceEEEEEEECCeEEEEEEEeCCCc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFME--KYDPTIEDFYRKEIEVDKAPCVLEILDTAGT  162 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~  162 (286)
                      ...++++++|.+|+|||||+|++.+..+..  ..+.++...  ..+.++ .  .+.++||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~--~~~~~~-~--~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGI--QWIKIS-P--GIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeee--EEEEec-C--CEEEEECCCC
Confidence            355899999999999999999999876532  223333322  223333 2  3789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR00092 GTP-binding protein YchF

Probab=98.30  E-value=2.6e-06  Score=77.39  Aligned_cols=83  Identities=17%  Similarity=-0.015  Sum_probs=61.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeE---------------EEEEEEeCCCcccch-
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAP---------------CVLEILDTAGTEQFA-  166 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~DtpG~~~~~-  166 (286)
                      ++++|+|.|++|||||++++.+...  ...|+.++.+.....+.+.+..               ..+.+.|.||...-. 
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998765  4567777666666666665532               357899999954321 


Q ss_pred             ------hhhhhcccCccEEEEEEECCC
Q psy10504        167 ------SMRDLYIKNGQGFVVVYSLTN  187 (286)
Q Consensus       167 ------~~~~~~~~~~d~vilv~d~~~  187 (286)
                            ...-..++.+|+++.|+++.+
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence                  122334688999999999853

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG2655|consensus

Probab=98.28  E-value=9.7e-06  Score=72.97  Aligned_cols=114  Identities=22%  Similarity=0.299  Sum_probs=69.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCc--------cCCCcc--ceEEEEEEECCeEEEEEEEeCCCccc-------ch
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEK--------YDPTIE--DFYRKEIEVDKAPCVLEILDTAGTEQ-------FA  166 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~--------~~~t~~--~~~~~~~~~~~~~~~l~l~DtpG~~~-------~~  166 (286)
                      .+.+.++|..|.|||||+|.|+...+...        ....+.  ......+.-+|....++++||||--+       |.
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            48999999999999999999998644432        111111  22233445567888899999999221       11


Q ss_pred             h------------------hhhhccc--CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        167 S------------------MRDLYIK--NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       167 ~------------------~~~~~~~--~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      .                  +.+.-+.  ..|++++.+..+... +..+.-  ..+.+  ....+.+|-|+-|+|..
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di--~~Mk~--l~~~vNiIPVI~KaD~l  171 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDI--EFMKK--LSKKVNLIPVIAKADTL  171 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhH--HHHHH--HhccccccceeeccccC
Confidence            1                  0111122  368888888876532 221111  11122  22378899999999986

>KOG1487|consensus

Probab=98.27  E-value=5.6e-06  Score=70.63  Aligned_cols=152  Identities=18%  Similarity=0.188  Sum_probs=98.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCc-CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh-------hhhhcccCc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGC-FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS-------MRDLYIKNG  176 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~-------~~~~~~~~~  176 (286)
                      -+|.++|-|.+||||++..+.+.. -++.|..|+-..+.....+.+..  +++.|.||..+-..       ......+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaK--iqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAK--IQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccc--eeeecCcchhcccccCCCCccEEEEEeecc
Confidence            489999999999999999998753 34556666555555666667766  89999999553221       233456789


Q ss_pred             cEEEEEEECCCcccHHHHHH-HH-------------------------------------HHHHHHh-------------
Q psy10504        177 QGFVVVYSLTNHHTFQDIKQ-MK-------------------------------------ELITRVK-------------  205 (286)
Q Consensus       177 d~vilv~d~~~~~s~~~~~~-~~-------------------------------------~~i~~~~-------------  205 (286)
                      +.+++|.|+-.|-+-..+-+ -+                                     ..+..++             
T Consensus       138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT  217 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT  217 (358)
T ss_pred             cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence            99999999987654332211 00                                     0001100             


Q ss_pred             --------CC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        206 --------GS--ERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       206 --------~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                              ..  --+|.+.+.||+|..+ -.        ++.-.+. ...+++||.++-|++++++.+-+.+.
T Consensus       218 ~DdLIdvVegnr~yVp~iyvLNkIdsIS-iE--------ELdii~~iphavpISA~~~wn~d~lL~~mweyL~  281 (358)
T KOG1487|consen  218 ADDLIDVVEGNRIYVPCIYVLNKIDSIS-IE--------ELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLK  281 (358)
T ss_pred             hhhhhhhhccCceeeeeeeeecccceee-ee--------ccceeeeccceeecccccccchHHHHHHHhhcch
Confidence                    00  1367788888888641 11        1111222 34689999999999999999888654

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.25  E-value=6.3e-05  Score=59.98  Aligned_cols=148  Identities=16%  Similarity=0.229  Sum_probs=85.5

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCC-Ccccchh--------------
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA-GTEQFAS--------------  167 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dtp-G~~~~~~--------------  167 (286)
                      ..+||.+.|+||+||||++.++.+..-...  -..+.+....+.-++...-|.++|.. |...+-+              
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V   81 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV   81 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence            458999999999999999998876322222  23456667777788888888889887 4221100              


Q ss_pred             -----------hhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH
Q psy10504        168 -----------MRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL  236 (286)
Q Consensus       168 -----------~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~  236 (286)
                                 ...+.++.||+  +++|--.+-.+. .+.....+... ...+.|+|.++.+.+..   +     ..+.+
T Consensus        82 ~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMElk-s~~f~~~ve~v-l~~~kpliatlHrrsr~---P-----~v~~i  149 (179)
T COG1618          82 NVEGLEEIAIPALRRALEEADV--IIIDEIGPMELK-SKKFREAVEEV-LKSGKPLIATLHRRSRH---P-----LVQRI  149 (179)
T ss_pred             eHHHHHHHhHHHHHHHhhcCCE--EEEecccchhhc-cHHHHHHHHHH-hcCCCcEEEEEecccCC---h-----HHHHh
Confidence                       01122334554  445644432221 11222222222 22378888888776532   1     22333


Q ss_pred             HHhcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        237 AQSWGCPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       237 ~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      .. .+.-++.   .+..|-+.++..|++.+..
T Consensus       150 k~-~~~v~v~---lt~~NR~~i~~~Il~~L~~  177 (179)
T COG1618         150 KK-LGGVYVF---LTPENRNRILNEILSVLKG  177 (179)
T ss_pred             hh-cCCEEEE---EccchhhHHHHHHHHHhcc
Confidence            33 3333333   5677777999999888765

>cd01855 YqeH YqeH

Probab=98.22  E-value=1.3e-06  Score=72.70  Aligned_cols=54  Identities=26%  Similarity=0.297  Sum_probs=36.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC----------CCccCCCccceEEEEEEECCeEEEEEEEeCCC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF----------MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG  161 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~----------~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG  161 (286)
                      +..+++++|.+|+|||||+|+|.+...          .+..++|+.+...  +..+.   .+.++||||
T Consensus       126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~~~---~~~~~DtPG  189 (190)
T cd01855         126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIK--IPLGN---GKKLYDTPG  189 (190)
T ss_pred             cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEE--EecCC---CCEEEeCcC
Confidence            346899999999999999999997432          2233344443332  33332   268999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.21  E-value=3.9e-06  Score=74.50  Aligned_cols=102  Identities=18%  Similarity=0.083  Sum_probs=67.7

Q ss_pred             eCCCccc-chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH
Q psy10504        158 DTAGTEQ-FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL  236 (286)
Q Consensus       158 DtpG~~~-~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~  236 (286)
                      -.|||-. -.......+..+|++++|+|++++.+.++.  ++....     .++|+++|+||+|+.+. ..  .......
T Consensus         6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~-----~~kp~iiVlNK~DL~~~-~~--~~~~~~~   75 (287)
T PRK09563          6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENP--MIDKII-----GNKPRLLILNKSDLADP-EV--TKKWIEY   75 (287)
T ss_pred             CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCCh--hHHHHh-----CCCCEEEEEEchhcCCH-HH--HHHHHHH
Confidence            4677642 222345567899999999999887654331  112211     16899999999998621 11  1111222


Q ss_pred             HHhcCCCEEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504        237 AQSWGCPFIEASAKNKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       237 ~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~  269 (286)
                      .+..+.+++.+||+++.|++++.+.+.+.+++.
T Consensus        76 ~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         76 FEEQGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             HHHcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            233467789999999999999999998887654

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.20  E-value=4e-06  Score=73.97  Aligned_cols=56  Identities=25%  Similarity=0.361  Sum_probs=39.7

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT  162 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~  162 (286)
                      .+.++++++|.+|+|||||+|+|.+...  +...++++...  ..+..+. .  +.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~-~--~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD-G--LELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC-C--EEEEECCCc
Confidence            3568999999999999999999998653  33344444332  3344432 2  789999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01859 MJ1464 MJ1464

Probab=98.19  E-value=5.2e-06  Score=66.64  Aligned_cols=56  Identities=25%  Similarity=0.302  Sum_probs=36.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEE-EEECCeEEEEEEEeCCCc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKE-IEVDKAPCVLEILDTAGT  162 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~l~DtpG~  162 (286)
                      ...+++++|.+++||||+++++.+..... ..++.+...... +..++   .+.+|||||.
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS---KIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence            45789999999999999999999754322 222222222222 22222   3889999993

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.18  E-value=3.9e-06  Score=66.34  Aligned_cols=79  Identities=16%  Similarity=0.138  Sum_probs=51.6

Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC
Q psy10504        170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASA  249 (286)
Q Consensus       170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa  249 (286)
                      ...+..+|++++|+|++++.+..+. .+...+...  .+++|+++|+||+|+.+ ...  ........+..+.+++++||
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~-~l~~~l~~~--~~~k~~iivlNK~DL~~-~~~--~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPP-DLERYVKEV--DPRKKNILLLNKADLLT-EEQ--RKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCH-HHHHHHHhc--cCCCcEEEEEechhcCC-HHH--HHHHHHHHHhcCCeEEEEEe
Confidence            3457889999999999987654421 222222221  14789999999999862 111  22333444455678999999


Q ss_pred             CCCCc
Q psy10504        250 KNKTN  254 (286)
Q Consensus       250 ~~~~g  254 (286)
                      +++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            98764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.17  E-value=6.1e-06  Score=73.22  Aligned_cols=57  Identities=26%  Similarity=0.349  Sum_probs=39.7

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      ...++++++|.+|+|||||+|+|.+...  +...++++...  ..+..+. .  +.++||||..
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~-~--~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK-G--LELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC-c--EEEEECCCcC
Confidence            3568999999999999999999998654  23333443332  2333332 3  7799999964

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=2.4e-05  Score=73.39  Aligned_cols=110  Identities=20%  Similarity=0.233  Sum_probs=71.8

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      +.++-|+++|+||.|||||++.|...--    ..|+.+.......+.++...++|+++|.  +...+ ....+-+|.|++
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~t----k~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~m-iDvaKIaDLVlL  139 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFT----KQTIDEIRGPITVVSGKTRRITFLECPS--DLHQM-IDVAKIADLVLL  139 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHH----HhhhhccCCceEEeecceeEEEEEeChH--HHHHH-HhHHHhhheeEE
Confidence            3567889999999999999998876311    1122122222223456667799999993  23333 234567999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCC
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLAS  223 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~  223 (286)
                      ++|.+=+-..+.+.. ++.+.. +   +.| ++-|+|+.|+..
T Consensus       140 lIdgnfGfEMETmEF-Lnil~~-H---GmPrvlgV~ThlDlfk  177 (1077)
T COG5192         140 LIDGNFGFEMETMEF-LNILIS-H---GMPRVLGVVTHLDLFK  177 (1077)
T ss_pred             EeccccCceehHHHH-HHHHhh-c---CCCceEEEEeeccccc
Confidence            999987766666654 333333 2   555 566789999973

>KOG1491|consensus

Probab=98.11  E-value=6.2e-06  Score=72.92  Aligned_cols=86  Identities=19%  Similarity=0.214  Sum_probs=62.7

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECC---------------eEEEEEEEeCCCcccc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDK---------------APCVLEILDTAGTEQF  165 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~---------------~~~~l~l~DtpG~~~~  165 (286)
                      .+.++++|+|.|++|||||+|.+..... ...++.++.+.....+.+..               ....++++|++|.-.-
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            3678999999999999999999998654 56677777766666655543               2346899999984432


Q ss_pred             ----hhhhhh---cccCccEEEEEEECCC
Q psy10504        166 ----ASMRDL---YIKNGQGFVVVYSLTN  187 (286)
Q Consensus       166 ----~~~~~~---~~~~~d~vilv~d~~~  187 (286)
                          ..+-..   -++.+|+++-|+++.+
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEecC
Confidence                223333   3577999999998764

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.11  E-value=7.1e-05  Score=68.44  Aligned_cols=155  Identities=17%  Similarity=0.267  Sum_probs=93.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcC-----------------CCccCC-C---cc----ceEEEEEEE-CCeEEEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCF-----------------MEKYDP-T---IE----DFYRKEIEV-DKAPCVLEIL  157 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~-----------------~~~~~~-t---~~----~~~~~~~~~-~~~~~~l~l~  157 (286)
                      .+=++++|+..+|||||+.+|....+                 +.+..+ |   ++    ......+.+ ++..++++++
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            46799999999999999999987221                 111111 1   11    111233444 5778889999


Q ss_pred             eCCC--------ccc-----chhh-h---------------hhcc--cCccEEEEEEECCC----cccHHHHHH-HHHHH
Q psy10504        158 DTAG--------TEQ-----FASM-R---------------DLYI--KNGQGFVVVYSLTN----HHTFQDIKQ-MKELI  201 (286)
Q Consensus       158 DtpG--------~~~-----~~~~-~---------------~~~~--~~~d~vilv~d~~~----~~s~~~~~~-~~~~i  201 (286)
                      |+-|        +.+     +-.. |               +..+  +.+=++++.-|.+=    ++.+.+... ....+
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            9998        110     0000 0               0111  22446666666542    233333332 34455


Q ss_pred             HHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC--CCcHHHHHHHHHHH
Q psy10504        202 TRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN--KTNVNEMFAEIVRE  265 (286)
Q Consensus       202 ~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~--~~gv~~l~~~i~~~  265 (286)
                      ...    ++|+++++|-.+-   ...........+.++++++++.+++.+  .+.+..+++.++..
T Consensus       177 k~i----gKPFvillNs~~P---~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLyE  235 (492)
T PF09547_consen  177 KEI----GKPFVILLNSTKP---YSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLYE  235 (492)
T ss_pred             HHh----CCCEEEEEeCCCC---CCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHhc
Confidence            543    8899999998763   233345667888899999999998875  45666666666553

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.11  E-value=8.9e-06  Score=65.34  Aligned_cols=55  Identities=24%  Similarity=0.328  Sum_probs=39.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT  162 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~  162 (286)
                      ...+++++|.+|+|||||+|++.+...  .+..++++.+.....  .+ ..  +.++||||.
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~--~~-~~--~~liDtPG~  155 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVK--LD-NK--IKLLDTPGI  155 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEE--ec-CC--EEEEECCCC
Confidence            568899999999999999999998653  334455555544432  22 22  789999993

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0469|consensus

Probab=98.11  E-value=7.2e-06  Score=75.79  Aligned_cols=113  Identities=24%  Similarity=0.292  Sum_probs=75.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCc-CCC-ccCC------CccceEEE-----------------------EEEECCeEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGC-FME-KYDP------TIEDFYRK-----------------------EIEVDKAPCV  153 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~-~~~-~~~~------t~~~~~~~-----------------------~~~~~~~~~~  153 (286)
                      -++-++.|.++|||||.+.|.... +.+ ...+      |-.+....                       +-.-++..+.
T Consensus        20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL   99 (842)
T KOG0469|consen   20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL   99 (842)
T ss_pred             ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence            456789999999999999987621 111 1111      11111000                       0011345677


Q ss_pred             EEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       154 l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      +.++|.|||-+|.+-....++.+|+.++|+|.-++.-.+.-.-+.+.+..     .+.-+++.||.|..
T Consensus       100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E-----RIkPvlv~NK~DRA  163 (842)
T KOG0469|consen  100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE-----RIKPVLVMNKMDRA  163 (842)
T ss_pred             EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh-----hccceEEeehhhHH
Confidence            89999999999999999999999999999999987655444434444444     33337788999964

>KOG0085|consensus

Probab=98.10  E-value=2.5e-06  Score=71.63  Aligned_cols=120  Identities=13%  Similarity=0.133  Sum_probs=81.8

Q ss_pred             EEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCC----------cccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCC
Q psy10504        151 PCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTN----------HHTFQDIKQMKELITRVKGSERVPILLVANKLD  220 (286)
Q Consensus       151 ~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~D  220 (286)
                      .+.|.++|.+|+..-+.-|.+.+.+.-.++++++.+.          ....++.+.++..+..+.-..+.++|+..||.|
T Consensus       198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD  277 (359)
T KOG0085|consen  198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD  277 (359)
T ss_pred             hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence            3458899999999888888888777766666665543          334555556666666655556889999999999


Q ss_pred             CCCCC---------------CCCCHHHHHHHHHhc----C------CCEEEEeCCCCCcHHHHHHHHHHHhhcCC
Q psy10504        221 LASHQ---------------REVPTLDGQALAQSW----G------CPFIEASAKNKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       221 l~~~~---------------~~~~~~~~~~~~~~~----~------~~~~~vSa~~~~gv~~l~~~i~~~i~~~~  270 (286)
                      +.++.               +..+......+...+    +      +--.++.|.+.+|++-+|.++.+.+.+..
T Consensus       278 lLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  278 LLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  352 (359)
T ss_pred             hhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence            86321               223333444443332    1      11356788899999999999999887654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.06  E-value=5.3e-05  Score=68.12  Aligned_cols=94  Identities=16%  Similarity=0.118  Sum_probs=56.3

Q ss_pred             EEEEEEeCCCcccchh-----h---hh---h-cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCC
Q psy10504        152 CVLEILDTAGTEQFAS-----M---RD---L-YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKL  219 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~-----~---~~---~-~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~  219 (286)
                      +.+.++||||......     +   ..   . .-...+..++|+|++.+  .+.+.+. ......    --+.-+|+||.
T Consensus       197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a-~~f~~~----~~~~giIlTKl  269 (318)
T PRK10416        197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQA-KAFHEA----VGLTGIILTKL  269 (318)
T ss_pred             CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHH-HHHHhh----CCCCEEEEECC
Confidence            4588999999653222     1   11   1 11346789999999853  2333332 222111    12447889999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       220 Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      |..  .+   .-.........+.|+..++  +|++++++-
T Consensus       270 D~t--~~---~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        270 DGT--AK---GGVVFAIADELGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCC--CC---ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence            964  22   1234455567799999998  888887763

>PRK13796 GTPase YqeH; Provisional

Probab=98.03  E-value=3.4e-05  Score=70.74  Aligned_cols=94  Identities=20%  Similarity=0.211  Sum_probs=61.8

Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH----HHHHHh
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG----QALAQS  239 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~----~~~~~~  239 (286)
                      .|.......-...+.+++|+|+.|..     ..|...+.+..  .+.|+++|+||+|+.+.  .......    ....+.
T Consensus        58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~--~~kpviLViNK~DLl~~--~~~~~~i~~~l~~~~k~  128 (365)
T PRK13796         58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV--GNNPVLLVGNKADLLPK--SVKKNKVKNWLRQEAKE  128 (365)
T ss_pred             HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh--CCCCEEEEEEchhhCCC--ccCHHHHHHHHHHHHHh
Confidence            45554444333344999999998853     23444444432  26799999999999632  2222222    233455


Q ss_pred             cCC---CEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504        240 WGC---PFIEASAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       240 ~~~---~~~~vSa~~~~gv~~l~~~i~~~i  266 (286)
                      .++   .++.+||+++.|++++++.|.+..
T Consensus       129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        129 LGLRPVDVVLISAQKGHGIDELLEAIEKYR  158 (365)
T ss_pred             cCCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            565   689999999999999999997753

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.02  E-value=1.2e-05  Score=72.48  Aligned_cols=57  Identities=28%  Similarity=0.358  Sum_probs=39.8

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      .+..++.++|-||+|||||+|+|.+...  ++..++++....  .+..+..   +.++||||.-
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q--~i~~~~~---i~LlDtPGii  188 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ--WIKLDDG---IYLLDTPGII  188 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE--EEEcCCC---eEEecCCCcC
Confidence            3558899999999999999999999655  333444433322  2333333   6789999954

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.01  E-value=3.8e-05  Score=67.53  Aligned_cols=94  Identities=14%  Similarity=0.054  Sum_probs=57.0

Q ss_pred             EEEEEEeCCCcccchhhhh-------hc-----ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCC
Q psy10504        152 CVLEILDTAGTEQFASMRD-------LY-----IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKL  219 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~~-------~~-----~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~  219 (286)
                      +.+.++||||....+....       ..     -...|.+++|+|++.+  .+.+... ..+.+..    -+.-++.||.
T Consensus       155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~-~~f~~~~----~~~g~IlTKl  227 (272)
T TIGR00064       155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQA-KVFNEAV----GLTGIILTKL  227 (272)
T ss_pred             CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHH-HHHHhhC----CCCEEEEEcc
Confidence            4588999999654332211       11     1248999999999743  3333332 2222211    1457889999


Q ss_pred             CCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       220 Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      |...  +   .-.........+.|+..++  +|++++++.
T Consensus       228 De~~--~---~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       228 DGTA--K---GGIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             CCCC--C---ccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            9752  1   1234445556689999888  888887663

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.01  E-value=6.7e-06  Score=66.23  Aligned_cols=59  Identities=25%  Similarity=0.300  Sum_probs=34.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCc-------cCCCccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEK-------YDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA  166 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~  166 (286)
                      -.++++|++|||||||+|.|........       ..+.-++.....+.+++..   .++||||...+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence            4789999999999999999998632111       1111112223445554443   479999965544

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.00  E-value=2.9e-05  Score=70.94  Aligned_cols=84  Identities=18%  Similarity=0.200  Sum_probs=58.8

Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-hcCCCEEEEeCC
Q psy10504        172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-SWGCPFIEASAK  250 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~vSa~  250 (286)
                      ...+.|.+++|++++.+-....+..++.....    .++|.++|+||+|+.+. .   ....+.+.. ..+.+++.+|++
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~-~---~~~~~~~~~~~~g~~Vi~vSa~  180 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED-A---EEKIAEVEALAPGVPVLAVSAL  180 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC-H---HHHHHHHHHhCCCCcEEEEECC
Confidence            46889999999999754444455555554444    27788999999999732 1   111122222 456899999999


Q ss_pred             CCCcHHHHHHHHH
Q psy10504        251 NKTNVNEMFAEIV  263 (286)
Q Consensus       251 ~~~gv~~l~~~i~  263 (286)
                      ++.|++++.+++.
T Consensus       181 ~g~gl~~L~~~L~  193 (356)
T PRK01889        181 DGEGLDVLAAWLS  193 (356)
T ss_pred             CCccHHHHHHHhh
Confidence            9999999988874

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.99  E-value=5.7e-05  Score=70.19  Aligned_cols=94  Identities=11%  Similarity=0.080  Sum_probs=53.1

Q ss_pred             EEEEEEEeCCCcccchh-hhh---hc--ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC
Q psy10504        151 PCVLEILDTAGTEQFAS-MRD---LY--IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH  224 (286)
Q Consensus       151 ~~~l~l~DtpG~~~~~~-~~~---~~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~  224 (286)
                      .+.+.|+||||...... +..   .+  ....+-++||+|+.-+....+   ....+...    --+--+++||.|... 
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~----~~~~g~IlTKlD~~a-  253 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS----VDVGSVIITKLDGHA-  253 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc----cCCcEEEEECccCCC-
Confidence            35688999999554332 111   11  234678999999876532222   22222221    125678899999751 


Q ss_pred             CCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504        225 QREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l  258 (286)
                      ..    -.........+.|+.+++  +|+.++++
T Consensus       254 rg----G~aLs~~~~t~~PI~fig--~Ge~v~Dl  281 (429)
T TIGR01425       254 KG----GGALSAVAATKSPIIFIG--TGEHIDDF  281 (429)
T ss_pred             Cc----cHHhhhHHHHCCCeEEEc--CCCChhhc
Confidence            11    123445556677777776  55555553

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=97.95  E-value=3.3e-05  Score=80.77  Aligned_cols=113  Identities=24%  Similarity=0.193  Sum_probs=66.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCcc------CCCccceEEEEEEECCeEEEEEEEeCCCcc--------cchhhhh
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKY------DPTIEDFYRKEIEVDKAPCVLEILDTAGTE--------QFASMRD  170 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~--------~~~~~~~  170 (286)
                      +=.+|+|++|+||||++..- +-.++-..      ..+.+......+-+.+.   -.++||+|..        .....|.
T Consensus       112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~  187 (1169)
T TIGR03348       112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWL  187 (1169)
T ss_pred             CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHH
Confidence            34689999999999999877 32232111      11111111222333333   3489999922        1222344


Q ss_pred             hcc---------cCccEEEEEEECCCccc--H-------HHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        171 LYI---------KNGQGFVVVYSLTNHHT--F-------QDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       171 ~~~---------~~~d~vilv~d~~~~~s--~-------~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      .++         +-.+|+|+++|+++--.  -       ..++..+.++...- ....||.|++||+|+.
T Consensus       188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-g~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-GARFPVYLVLTKADLL  256 (1169)
T ss_pred             HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecchhh
Confidence            433         34799999999986321  1       23344445555432 2389999999999986

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=97.92  E-value=5e-05  Score=64.93  Aligned_cols=86  Identities=19%  Similarity=0.126  Sum_probs=53.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC--cCCCc--cCCCccceEEEEEEEC-CeEEEEEEEeCCCcccchh------hhhh
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEK--YDPTIEDFYRKEIEVD-KAPCVLEILDTAGTEQFAS------MRDL  171 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~--~~~t~~~~~~~~~~~~-~~~~~l~l~DtpG~~~~~~------~~~~  171 (286)
                      +-.-|+|+|++++|||+|+|++.+.  .|...  ..+++........... +....+.++||+|......      ....
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~   85 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF   85 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence            3456889999999999999999998  55432  2344433332222221 1234588999999653322      1222


Q ss_pred             cccC--ccEEEEEEECCCc
Q psy10504        172 YIKN--GQGFVVVYSLTNH  188 (286)
Q Consensus       172 ~~~~--~d~vilv~d~~~~  188 (286)
                      .+..  ++.+|+..+.+..
T Consensus        86 ~l~~llss~~i~n~~~~~~  104 (224)
T cd01851          86 ALATLLSSVLIYNSWETIL  104 (224)
T ss_pred             HHHHHHhCEEEEeccCccc
Confidence            3333  7888888887653

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0447|consensus

Probab=97.91  E-value=0.00022  Score=66.90  Aligned_cols=69  Identities=14%  Similarity=0.234  Sum_probs=45.0

Q ss_pred             EEEEEeCCCcc-------------cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCC
Q psy10504        153 VLEILDTAGTE-------------QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKL  219 (286)
Q Consensus       153 ~l~l~DtpG~~-------------~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~  219 (286)
                      .+.++|.||..             ....+...|..+.+++|+|+--..   .+.-+.....+-......+...|+|.||.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence            37799999932             223366788999999999985322   22222223333333344478899999999


Q ss_pred             CCCCC
Q psy10504        220 DLASH  224 (286)
Q Consensus       220 Dl~~~  224 (286)
                      |+.+.
T Consensus       490 DlAEk  494 (980)
T KOG0447|consen  490 DLAEK  494 (980)
T ss_pred             chhhh
Confidence            99743

>PRK12288 GTPase RsgA; Reviewed

Probab=97.89  E-value=1.5e-05  Score=72.51  Aligned_cols=58  Identities=17%  Similarity=0.345  Sum_probs=36.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCC--ccCCC--c---cceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFME--KYDPT--I---EDFYRKEIEVDKAPCVLEILDTAGTEQFA  166 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~--~~~~t--~---~~~~~~~~~~~~~~~~l~l~DtpG~~~~~  166 (286)
                      .++|+|.+|||||||+|+|.+.....  .....  .   ++.....+.+++..   .++||||...+.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            37899999999999999999753321  11110  0   11122334444332   389999987655

>PRK13695 putative NTPase; Provisional

Probab=97.88  E-value=0.00026  Score=57.91  Aligned_cols=78  Identities=10%  Similarity=0.146  Sum_probs=46.5

Q ss_pred             cccCccEEEEEEEC---CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEe
Q psy10504        172 YIKNGQGFVVVYSL---TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEAS  248 (286)
Q Consensus       172 ~~~~~d~vilv~d~---~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vS  248 (286)
                      .+..++.  +++|=   .+..+    ..+...+.... ..+.|++++.+|....        .....+....+..++++ 
T Consensus        93 ~l~~~~~--lllDE~~~~e~~~----~~~~~~l~~~~-~~~~~~i~v~h~~~~~--------~~~~~i~~~~~~~i~~~-  156 (174)
T PRK13695         93 ALEEADV--IIIDEIGKMELKS----PKFVKAVEEVL-DSEKPVIATLHRRSVH--------PFVQEIKSRPGGRVYEL-  156 (174)
T ss_pred             ccCCCCE--EEEECCCcchhhh----HHHHHHHHHHH-hCCCeEEEEECchhhH--------HHHHHHhccCCcEEEEE-
Confidence            3455666  67773   22221    22333333332 3478999999985432        23444555566777777 


Q ss_pred             CCCCCcHHHHHHHHHHHhh
Q psy10504        249 AKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       249 a~~~~gv~~l~~~i~~~i~  267 (286)
                        +.+|-+++...|.+.++
T Consensus       157 --~~~~r~~~~~~~~~~~~  173 (174)
T PRK13695        157 --TPENRDSLPFEILNRLK  173 (174)
T ss_pred             --cchhhhhHHHHHHHHHh
Confidence              66777889998888765

>cd03112 CobW_like The function of this protein family is unkown

Probab=97.87  E-value=7.3e-05  Score=60.35  Aligned_cols=63  Identities=13%  Similarity=0.104  Sum_probs=36.8

Q ss_pred             EEEEEEeCCCcccchhhhhh--------cccCccEEEEEEECCCcccH-HHHHHHHHHHHHHhCCCCCcEEEEEeCCCC
Q psy10504        152 CVLEILDTAGTEQFASMRDL--------YIKNGQGFVVVYSLTNHHTF-QDIKQMKELITRVKGSERVPILLVANKLDL  221 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~~~--------~~~~~d~vilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~~piivv~nK~Dl  221 (286)
                      ....++||||..+-..+...        ..-..+.++.++|+...... ++...+...+..       -=++++||+|+
T Consensus        87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-------ad~ivlnk~dl  158 (158)
T cd03112          87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-------ADRILLNKTDL  158 (158)
T ss_pred             CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-------CCEEEEecccC
Confidence            45678999997644433322        22347889999998653321 122222333333       12778999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK14974 cell division protein FtsY; Provisional

Probab=97.87  E-value=6.6e-05  Score=67.85  Aligned_cols=94  Identities=12%  Similarity=0.094  Sum_probs=54.9

Q ss_pred             EEEEEEeCCCcccchh-hh---hhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504        152 CVLEILDTAGTEQFAS-MR---DLY--IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ  225 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~-~~---~~~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~  225 (286)
                      +.+.++||+|...... +.   ..+  ....|.+++|+|+..+.   +.......+...   -+ .--+++||.|.....
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~---~~-~~giIlTKlD~~~~~  295 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEA---VG-IDGVILTKVDADAKG  295 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhc---CC-CCEEEEeeecCCCCc
Confidence            3488999999653222 11   111  12478899999997643   221111222211   12 346788999975211


Q ss_pred             CCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        226 REVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                           -....+....+.|+..++  +|++++++.
T Consensus       296 -----G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        296 -----GAALSIAYVIGKPILFLG--VGQGYDDLI  322 (336)
T ss_pred             -----cHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence                 123444555789998887  799998764

>PRK12289 GTPase RsgA; Reviewed

Probab=97.84  E-value=3.1e-05  Score=70.51  Aligned_cols=55  Identities=29%  Similarity=0.343  Sum_probs=35.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCC--CccCC-------CccceEEEEEEECCeEEEEEEEeCCCcccc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFM--EKYDP-------TIEDFYRKEIEVDKAPCVLEILDTAGTEQF  165 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~--~~~~~-------t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~  165 (286)
                      .++|+|.+|||||||+|+|.+....  .....       |++.  ...+...+..   .++||||...+
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~--~~l~~l~~g~---~liDTPG~~~~  237 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRH--VELFELPNGG---LLADTPGFNQP  237 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCce--eEEEECCCCc---EEEeCCCcccc
Confidence            4899999999999999999975332  11111       2322  2334443332   48999996543

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.80  E-value=0.00011  Score=67.33  Aligned_cols=146  Identities=20%  Similarity=0.222  Sum_probs=74.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCC-cc-C-C-CccceE---------------EEEEE-E-C----------CeE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFME-KY-D-P-TIEDFY---------------RKEIE-V-D----------KAP  151 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~-~-~-t~~~~~---------------~~~~~-~-~----------~~~  151 (286)
                      +.-.++++|++|+||||++.+|....... .. . . .+.+..               ...+. . .          -..
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~  215 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN  215 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence            34578899999999999999887532110 00 0 0 000000               00000 0 0          012


Q ss_pred             EEEEEEeCCCcccchhhh----hhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCC----CcEEEEEeCCCC
Q psy10504        152 CVLEILDTAGTEQFASMR----DLY--IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSER----VPILLVANKLDL  221 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~----~~~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~----~piivv~nK~Dl  221 (286)
                      +.+.++||+|...++...    ..+  .....-.++|++++...  +.+.+....+......+.    -+-=+++||.|.
T Consensus       216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE  293 (374)
T PRK14722        216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE  293 (374)
T ss_pred             CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence            358899999966443321    111  12344568899887632  223332333332211111    123577799997


Q ss_pred             CCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      ..     ..-....+....+.|+..++  +|++|.+
T Consensus       294 t~-----~~G~~l~~~~~~~lPi~yvt--~Gq~VPe  322 (374)
T PRK14722        294 AS-----NLGGVLDTVIRYKLPVHYVS--TGQKVPE  322 (374)
T ss_pred             CC-----CccHHHHHHHHHCcCeEEEe--cCCCCCc
Confidence            52     22345556667788877776  5555443

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.80  E-value=3.2e-05  Score=70.87  Aligned_cols=55  Identities=29%  Similarity=0.376  Sum_probs=37.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCc-------CCCccCCCccceEEEEEEECCeEEEEEEEeCCCccc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGC-------FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ  164 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~  164 (286)
                      .++.++|.+|||||||+|++.+..       ..+..++|+.+..  .+..++.   +.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~~---~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDDG---HSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCCC---CEEEECCCCCC
Confidence            589999999999999999999742       2334455544433  2333222   56899999653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.79  E-value=0.0002  Score=67.95  Aligned_cols=139  Identities=17%  Similarity=0.167  Sum_probs=74.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC----------CC--ccCCCc-c------ceEEEEEEE-C-----------CeE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF----------ME--KYDPTI-E------DFYRKEIEV-D-----------KAP  151 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~----------~~--~~~~t~-~------~~~~~~~~~-~-----------~~~  151 (286)
                      ..-.++|+|+.|+||||++..|.....          ..  .+.... .      ......+.. .           -..
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~  428 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD  428 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence            356789999999999999888864210          00  011000 0      000000111 0           023


Q ss_pred             EEEEEEeCCCcccchhhhhh---cc--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC
Q psy10504        152 CVLEILDTAGTEQFASMRDL---YI--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR  226 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~~~---~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~  226 (286)
                      +.+.|+||+|....+.....   .+  ......++|++.+.  +..++...+..+..     ..+.-+|+||.|..    
T Consensus       429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt----  497 (559)
T PRK12727        429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDET----  497 (559)
T ss_pred             CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCc----
Confidence            45889999996533321110   01  01234677777764  34444444333333     23677999999974    


Q ss_pred             CCCHHHHHHHHHhcCCCEEEEeCCCCCcH
Q psy10504        227 EVPTLDGQALAQSWGCPFIEASAKNKTNV  255 (286)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~vSa~~~~gv  255 (286)
                       ...-.........+.|+..++  +|+.+
T Consensus       498 -~~lG~aLsv~~~~~LPI~yvt--~GQ~V  523 (559)
T PRK12727        498 -GRFGSALSVVVDHQMPITWVT--DGQRV  523 (559)
T ss_pred             -cchhHHHHHHHHhCCCEEEEe--CCCCc
Confidence             122345556667788888776  66666

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.79  E-value=4.1e-05  Score=67.38  Aligned_cols=58  Identities=26%  Similarity=0.269  Sum_probs=37.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC------CCcc-CCCccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCF------MEKY-DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA  166 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~------~~~~-~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~  166 (286)
                      ..+++|.+|||||||+|+|.....      .... .+.-++.....+.+++..   .++||||...+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            678999999999999999987322      1111 122223345556675333   279999977654

>KOG0099|consensus

Probab=97.79  E-value=6.2e-05  Score=64.42  Aligned_cols=71  Identities=14%  Similarity=0.177  Sum_probs=51.1

Q ss_pred             EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc-------c---HHHHHHHHHHHHHHhCCCCCcEEEEEeCCCC
Q psy10504        152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH-------T---FQDIKQMKELITRVKGSERVPILLVANKLDL  221 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~-------s---~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl  221 (286)
                      ++|+.+|.+||.+-+.-|...+.+..++|+|++.+.-.       +   +++...++..+...+-...+.+|+..||.|+
T Consensus       202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl  281 (379)
T KOG0099|consen  202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  281 (379)
T ss_pred             cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence            34899999999999999999999999999999987521       2   2222223333332222236789999999997


Q ss_pred             C
Q psy10504        222 A  222 (286)
Q Consensus       222 ~  222 (286)
                      .
T Consensus       282 l  282 (379)
T KOG0099|consen  282 L  282 (379)
T ss_pred             H
Confidence            4

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.79  E-value=4.5e-05  Score=66.13  Aligned_cols=56  Identities=25%  Similarity=0.247  Sum_probs=36.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCC--c-------cCCCccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFME--K-------YDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA  166 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~--~-------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~  166 (286)
                      -.++++|.+|+|||||+|+|.+.....  .       ...|+.....  +...+.    .++||||...+.
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l--~~l~~~----~liDtPG~~~~~  185 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL--FHFHGG----LIADTPGFNEFG  185 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE--EEcCCc----EEEeCCCccccC
Confidence            468999999999999999999853221  1       1223333322  333332    489999976543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK13796 GTPase YqeH; Provisional

Probab=97.75  E-value=4.2e-05  Score=70.18  Aligned_cols=54  Identities=28%  Similarity=0.345  Sum_probs=37.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCc------C-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGC------F-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~------~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      .++.++|.+|||||||+|+|....      . .+..++|+.+...  +.+++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~--~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIE--IPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEE--EEcCCC---cEEEECCCcc
Confidence            479999999999999999998532      1 3445555554433  333333   3589999964

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.65  E-value=5e-05  Score=67.41  Aligned_cols=57  Identities=25%  Similarity=0.331  Sum_probs=36.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCc--c-------CCCccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEK--Y-------DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA  166 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~--~-------~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~  166 (286)
                      -.++++|++|+|||||+|.|.+......  .       ..|+.  ....+...+.   ..++||||..++.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~--~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTT--HRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccc--eEEEEEcCCC---CEEEECCCCCccC
Confidence            5799999999999999999998533221  1       11221  2233444432   2489999986654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.63  E-value=0.00039  Score=65.06  Aligned_cols=90  Identities=16%  Similarity=0.149  Sum_probs=52.4

Q ss_pred             EEEEEeCCCcccchhh-----hh-hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCC
Q psy10504        153 VLEILDTAGTEQFASM-----RD-LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQ  225 (286)
Q Consensus       153 ~l~l~DtpG~~~~~~~-----~~-~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~  225 (286)
                      .+.++||||.......     .. ..+..+|.+++|+|++...   +.......+..     .++ .-+|.||.|..  .
T Consensus       177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~-----~l~i~gvIlTKlD~~--a  246 (437)
T PRK00771        177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE-----AVGIGGIIITKLDGT--A  246 (437)
T ss_pred             CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh-----cCCCCEEEEecccCC--C
Confidence            5889999996543321     11 1134578999999987652   22222222222     233 35778999975  1


Q ss_pred             CCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        226 REVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      +   .-.+.......+.|+.+++  +|+.+++
T Consensus       247 ~---~G~~ls~~~~~~~Pi~fig--~Ge~v~D  273 (437)
T PRK00771        247 K---GGGALSAVAETGAPIKFIG--TGEKIDD  273 (437)
T ss_pred             c---ccHHHHHHHHHCcCEEEEe--cCCCccc
Confidence            1   1234556667788888776  4555544

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.60  E-value=0.0004  Score=64.50  Aligned_cols=137  Identities=14%  Similarity=0.112  Sum_probs=73.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCC------------ccCCCcc-------ceEEEEE--------------EECC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFME------------KYDPTIE-------DFYRKEI--------------EVDK  149 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~------------~~~~t~~-------~~~~~~~--------------~~~~  149 (286)
                      ..-.++++|+.|+||||++..|.......            .+.....       +.....+              ...+
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~  269 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG  269 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence            34589999999999999998776521100            0000000       0000000              0112


Q ss_pred             eEEEEEEEeCCCcccchhh----hhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        150 APCVLEILDTAGTEQFASM----RDLYI--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       150 ~~~~l~l~DtpG~~~~~~~----~~~~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                        ..+.++||+|.......    ...+.  ....-.+||+|++..  .+.+.++......     --.-=+++||.|-..
T Consensus       270 --~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~  340 (420)
T PRK14721        270 --KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG-----HGIHGCIITKVDEAA  340 (420)
T ss_pred             --CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeeeCCC
Confidence              24789999996543221    11121  224467889998743  2233333222221     113357789999752


Q ss_pred             CCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcH
Q psy10504        224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNV  255 (286)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv  255 (286)
                           ..-....+....+.|+..++  +|.++
T Consensus       341 -----~~G~~l~~~~~~~lPi~yvt--~Gq~V  365 (420)
T PRK14721        341 -----SLGIALDAVIRRKLVLHYVT--NGQKV  365 (420)
T ss_pred             -----CccHHHHHHHHhCCCEEEEE--CCCCc
Confidence                 22345566677788888776  67766

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.60  E-value=0.0019  Score=52.84  Aligned_cols=86  Identities=19%  Similarity=0.226  Sum_probs=59.5

Q ss_pred             eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCC
Q psy10504        150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVP  229 (286)
Q Consensus       150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~  229 (286)
                      ..+.+.++|||+...  ......+..+|.+++++..+. .+...+..++..+...    +.|+.+|+||.|...  .  .
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~----~~~~~vV~N~~~~~~--~--~  159 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF----GIPVGVVINKYDLND--E--I  159 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc----CCCEEEEEeCCCCCc--c--h
Confidence            345689999997542  233455688999999999874 4667777776666542    568899999999652  1  2


Q ss_pred             HHHHHHHHHhcCCCEEE
Q psy10504        230 TLDGQALAQSWGCPFIE  246 (286)
Q Consensus       230 ~~~~~~~~~~~~~~~~~  246 (286)
                      ..+...+.+..+++++.
T Consensus       160 ~~~~~~~~~~~~~~vl~  176 (179)
T cd03110         160 AEEIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHHHcCCCeEE
Confidence            34556667777877653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.58  E-value=0.00047  Score=60.76  Aligned_cols=94  Identities=18%  Similarity=0.192  Sum_probs=64.8

Q ss_pred             hhhhhcccCccEEEEEEECCCccc-HHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEE
Q psy10504        167 SMRDLYIKNGQGFVVVYSLTNHHT-FQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFI  245 (286)
Q Consensus       167 ~~~~~~~~~~d~vilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  245 (286)
                      .+.+.-..+.|-+++|+.+.+|+- ..-+..++-....    .++.-+|++||+|+.++..... .+.......++.+++
T Consensus        71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~----~gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~~~gy~v~  145 (301)
T COG1162          71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA----GGIEPVIVLNKIDLLDDEEAAV-KELLREYEDIGYPVL  145 (301)
T ss_pred             ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH----cCCcEEEEEEccccCcchHHHH-HHHHHHHHhCCeeEE
Confidence            344444555777888888888763 3333333333333    3777788899999984333222 456667778899999


Q ss_pred             EEeCCCCCcHHHHHHHHHHH
Q psy10504        246 EASAKNKTNVNEMFAEIVRE  265 (286)
Q Consensus       246 ~vSa~~~~gv~~l~~~i~~~  265 (286)
                      .+|++++.|++++.+.+...
T Consensus       146 ~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         146 FVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             EecCcCcccHHHHHHHhcCC
Confidence            99999999999998877654

>KOG1424|consensus

Probab=97.55  E-value=0.00011  Score=68.41  Aligned_cols=55  Identities=18%  Similarity=0.148  Sum_probs=39.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCC--ccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFME--KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      .+.|+++|-|||||||+||+|.+.+.++  ..++.+..+.+..+.  ..   +.+.|+||.-
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls--~~---v~LCDCPGLV  370 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS--PS---VCLCDCPGLV  370 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC--CC---ceecCCCCcc
Confidence            5899999999999999999999987654  334444444444332  22   6789999943

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.53  E-value=0.00034  Score=55.82  Aligned_cols=58  Identities=26%  Similarity=0.193  Sum_probs=34.9

Q ss_pred             EEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCC
Q psy10504        151 PCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD  220 (286)
Q Consensus       151 ~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~D  220 (286)
                      .+.+.++||+|....   ...++..+|-++++...+-.+.+.-++   ..+.      ..-=++++||.|
T Consensus        91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~------~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIK---AGIM------EIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhh---hhHh------hhcCEEEEeCCC
Confidence            356889999995422   234888899998888766222111111   1111      122388899998

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK00098 GTPase RsgA; Reviewed

Probab=97.53  E-value=0.0002  Score=63.96  Aligned_cols=57  Identities=23%  Similarity=0.262  Sum_probs=35.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCc--cC-------CCccceEEEEEEECCeEEEEEEEeCCCcccc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEK--YD-------PTIEDFYRKEIEVDKAPCVLEILDTAGTEQF  165 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~--~~-------~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~  165 (286)
                      ...++++|.+|+|||||+|+|.+......  ..       .|+.  ....+..++.   ..++||||...+
T Consensus       164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~--~~~~~~~~~~---~~~~DtpG~~~~  229 (298)
T PRK00098        164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTT--HVELYDLPGG---GLLIDTPGFSSF  229 (298)
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccc--cEEEEEcCCC---cEEEECCCcCcc
Confidence            34689999999999999999987533211  11       1221  1223333333   357999997543

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.51  E-value=0.0018  Score=58.19  Aligned_cols=145  Identities=21%  Similarity=0.214  Sum_probs=77.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCc------------cC--CCccceEEEEEEECCeE--------------------
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEK------------YD--PTIEDFYRKEIEVDKAP--------------------  151 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~------------~~--~t~~~~~~~~~~~~~~~--------------------  151 (286)
                      ..++-|-=|||||||++.++.+.--..            ..  ....+.....+...++.                    
T Consensus         3 VtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~   82 (323)
T COG0523           3 VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRR   82 (323)
T ss_pred             EEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhcc
Confidence            456889999999999999987432100            00  00111111112221111                    


Q ss_pred             --EEEEEEeCCCcccchhhhhhccc--------CccEEEEEEECCCcccHHH-HHHHHHHHHHHhCCCCCcEEEEEeCCC
Q psy10504        152 --CVLEILDTAGTEQFASMRDLYIK--------NGQGFVVVYSLTNHHTFQD-IKQMKELITRVKGSERVPILLVANKLD  220 (286)
Q Consensus       152 --~~l~l~DtpG~~~~~~~~~~~~~--------~~d~vilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piivv~nK~D  220 (286)
                        +...++.|.|...-.+....+..        ..|+++-|+|+..-..... .......-...      -=+|++||.|
T Consensus        83 ~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~D  156 (323)
T COG0523          83 DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTD  156 (323)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEeccc
Confidence              34567888887655444333332        2578999999987443222 22222222221      2288999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhcC--CCEEEEeCCCCCcHHHHHH
Q psy10504        221 LASHQREVPTLDGQALAQSWG--CPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       221 l~~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~gv~~l~~  260 (286)
                      +.++. .  ....+...+..+  .+++.+|. .+.+..+++.
T Consensus       157 lv~~~-~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~  194 (323)
T COG0523         157 LVDAE-E--LEALEARLRKLNPRARIIETSY-GDVDLAELLD  194 (323)
T ss_pred             CCCHH-H--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence            98433 2  333333444433  77888876 3445544444

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.49  E-value=0.00054  Score=62.66  Aligned_cols=150  Identities=24%  Similarity=0.309  Sum_probs=79.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc----ceEE---------------E--EEEEC----------CeEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE----DFYR---------------K--EIEVD----------KAPC  152 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~----~~~~---------------~--~~~~~----------~~~~  152 (286)
                      .-.|+++|+.||||||-+-.|...-.-......++    |.+.               .  .+...          -..+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            55789999999999999877765322111111111    0000               0  00000          1223


Q ss_pred             EEEEEeCCCcccchhhh----hhcccC--ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcE-EEEEeCCCCCCCC
Q psy10504        153 VLEILDTAGTEQFASMR----DLYIKN--GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPI-LLVANKLDLASHQ  225 (286)
Q Consensus       153 ~l~l~DtpG~~~~~~~~----~~~~~~--~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ivv~nK~Dl~~~~  225 (286)
                      .+.|+||.|...++...    ..++..  ..-+.||++++..  .++++..+..+..      +|+ -+++||.|-.   
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~------~~i~~~I~TKlDET---  351 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL------FPIDGLIFTKLDET---  351 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc------CCcceeEEEccccc---
Confidence            58899999977666532    223322  2346677777653  3445444444333      233 4667999965   


Q ss_pred             CCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH-H----HHHHHHHhhc
Q psy10504        226 REVPTLDGQALAQSWGCPFIEASAKNKTNVNE-M----FAEIVREMNF  268 (286)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~-l----~~~i~~~i~~  268 (286)
                        ...-..-.+....+.|+..++  +|++|.+ +    -+++++.+.+
T Consensus       352 --~s~G~~~s~~~e~~~PV~YvT--~GQ~VPeDI~va~~~~Lv~~~~g  395 (407)
T COG1419         352 --TSLGNLFSLMYETRLPVSYVT--NGQRVPEDIVVANPDYLVRRILG  395 (407)
T ss_pred             --CchhHHHHHHHHhCCCeEEEe--CCCCCCchhhhcChHHHHHHHhc
Confidence              223334455556677766665  5655432 2    2355555543

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.49  E-value=0.00037  Score=63.89  Aligned_cols=140  Identities=16%  Similarity=0.125  Sum_probs=74.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCC---------C-ccC-CCcc---c---eEEEEEE--E------------C-CeE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFM---------E-KYD-PTIE---D---FYRKEIE--V------------D-KAP  151 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~---------~-~~~-~t~~---~---~~~~~~~--~------------~-~~~  151 (286)
                      ...|+++|+.|+||||++..|......         . .+. ....   .   .....+.  .            . ...
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            357999999999999999988641110         0 000 0000   0   0000010  0            0 012


Q ss_pred             EEEEEEeCCCcccchhh----hhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504        152 CVLEILDTAGTEQFASM----RDLYI--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ  225 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~----~~~~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~  225 (286)
                      +.+.|+||+|.......    ...++  ...+.++||+|++-.  .+++......+..   . + .-=+++||.|-..  
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~---~-~-idglI~TKLDET~--  391 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD---I-H-IDGIVFTKFDETA--  391 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC---C-C-CCEEEEEcccCCC--
Confidence            45889999996532221    11222  235678899887543  2233333333322   1 1 2357789999752  


Q ss_pred             CCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        226 REVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                         ..-.+..+....+.|+..++  +|+++.+
T Consensus       392 ---k~G~iLni~~~~~lPIsyit--~GQ~VPe  418 (436)
T PRK11889        392 ---SSGELLKIPAVSSAPIVLMT--DGQDVKK  418 (436)
T ss_pred             ---CccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence               12345566777888887776  5665543

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.48  E-value=0.00036  Score=56.87  Aligned_cols=135  Identities=16%  Similarity=0.293  Sum_probs=68.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeC-CCccc--------------------
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDT-AGTEQ--------------------  164 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt-pG~~~--------------------  164 (286)
                      +|.+.|++|+|||||+.+++...-...  -....+.+..+..++..+-|.+.|. .|.+.                    
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~--~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~   78 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKG--LPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDL   78 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTC--GGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-H
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccC--CccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcH
Confidence            689999999999999999886321111  1222344444555666666677776 33211                    


Q ss_pred             --chhhhhhcc----cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCC-CCCCCCCCCCHHHHHHHH
Q psy10504        165 --FASMRDLYI----KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKL-DLASHQREVPTLDGQALA  237 (286)
Q Consensus       165 --~~~~~~~~~----~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~-Dl~~~~~~~~~~~~~~~~  237 (286)
                        |.......+    ..+|  ++++|=-.+-.+. ...+...+...-. +++|++.++-+. +.+         -.+.+.
T Consensus        79 e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~-~~~F~~~v~~~l~-s~~~vi~vv~~~~~~~---------~l~~i~  145 (168)
T PF03266_consen   79 ESFEEIGLPALRNALSSSD--LIVIDEIGKMELK-SPGFREAVEKLLD-SNKPVIGVVHKRSDNP---------FLEEIK  145 (168)
T ss_dssp             HHHHCCCCCCCHHHHHCCH--EEEE---STTCCC--CHHHHHHHHHHC-TTSEEEEE--SS--SC---------CHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc-CHHHHHHHHHHHc-CCCcEEEEEecCCCcH---------HHHHHH
Confidence              111111112    2344  7777743321111 1223444444333 578988888776 432         345667


Q ss_pred             HhcCCCEEEEeCCCCCcH
Q psy10504        238 QSWGCPFIEASAKNKTNV  255 (286)
Q Consensus       238 ~~~~~~~~~vSa~~~~gv  255 (286)
                      ...++.+++++..+.+-+
T Consensus       146 ~~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  146 RRPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTTSEEEE--TTTCCCH
T ss_pred             hCCCcEEEEeChhHHhhH
Confidence            777788898876665544

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.48  E-value=0.00024  Score=59.42  Aligned_cols=92  Identities=22%  Similarity=0.153  Sum_probs=52.8

Q ss_pred             EEEEEEeCCCcccchhh----hhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504        152 CVLEILDTAGTEQFASM----RDLYI--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ  225 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~----~~~~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~  225 (286)
                      +.+.++||||...+...    ...++  ...+-+++|++++...  +.+..........    + +-=++.||.|..   
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~~~~~~~~~----~-~~~lIlTKlDet---  153 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQALAFYEAF----G-IDGLILTKLDET---  153 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHHHHHHHHHS----S-TCEEEEESTTSS---
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHHHHHHhhcc----c-CceEEEEeecCC---
Confidence            34789999996543321    11111  2467899999997653  3333322222221    1 225668999975   


Q ss_pred             CCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        226 REVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                        ...-.........+.|+-.+|  +|+++++
T Consensus       154 --~~~G~~l~~~~~~~~Pi~~it--~Gq~V~D  181 (196)
T PF00448_consen  154 --ARLGALLSLAYESGLPISYIT--TGQRVDD  181 (196)
T ss_dssp             --STTHHHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred             --CCcccceeHHHHhCCCeEEEE--CCCChhc
Confidence              122345666777888888777  6666643

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.39  E-value=0.00072  Score=61.78  Aligned_cols=140  Identities=16%  Similarity=0.174  Sum_probs=73.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCC----------CccCCCc-c------ceEEEEEE-E-C-------------Ce
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFM----------EKYDPTI-E------DFYRKEIE-V-D-------------KA  150 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~----------~~~~~t~-~------~~~~~~~~-~-~-------------~~  150 (286)
                      +.-.++++|+.|+||||++..+......          ..+.... .      +.....+. . +             ..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~  284 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN  284 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence            3456899999999999998888642100          0111100 0      00000010 0 0             01


Q ss_pred             EEEEEEEeCCCcccchhh----hhhccc--CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCC-cEEEEEeCCCCCC
Q psy10504        151 PCVLEILDTAGTEQFASM----RDLYIK--NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERV-PILLVANKLDLAS  223 (286)
Q Consensus       151 ~~~l~l~DtpG~~~~~~~----~~~~~~--~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~-piivv~nK~Dl~~  223 (286)
                      .+.+.++||||.......    ...+..  ..+.+++|.++.  ...+++......   +.   .+ +--+++||.|...
T Consensus       285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~---f~---~l~i~glI~TKLDET~  356 (407)
T PRK12726        285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPK---LA---EIPIDGFIITKMDETT  356 (407)
T ss_pred             CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHh---cC---cCCCCEEEEEcccCCC
Confidence            245889999997543321    122222  235666776653  233333332222   21   22 3367789999751


Q ss_pred             CCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                           ..-....+....+.|+..++  +|+++.+
T Consensus       357 -----~~G~~Lsv~~~tglPIsylt--~GQ~Vpd  383 (407)
T PRK12726        357 -----RIGDLYTVMQETNLPVLYMT--DGQNITE  383 (407)
T ss_pred             -----CccHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence                 12345666777888888887  6666654

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.36  E-value=0.0014  Score=53.39  Aligned_cols=83  Identities=16%  Similarity=0.090  Sum_probs=44.8

Q ss_pred             EEEEEEeCCCcccchhh----hhhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504        152 CVLEILDTAGTEQFASM----RDLY--IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ  225 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~----~~~~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~  225 (286)
                      +.+.++||||...+..-    ...+  ....+.+++|+|+....   +...+...+.+..   + ..-++.||.|.....
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~~~~  155 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGDARG  155 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCCCCc
Confidence            34778999997533211    1111  13489999999986443   2223333333211   2 346777999976211


Q ss_pred             CCCCHHHHHHHHHhcCCCEEE
Q psy10504        226 REVPTLDGQALAQSWGCPFIE  246 (286)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~  246 (286)
                           ......+...+.|+..
T Consensus       156 -----g~~~~~~~~~~~p~~~  171 (173)
T cd03115         156 -----GAALSIRAVTGKPIKF  171 (173)
T ss_pred             -----chhhhhHHHHCcCeEe
Confidence                 1222355666666543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG3859|consensus

Probab=97.35  E-value=0.00034  Score=60.50  Aligned_cols=115  Identities=20%  Similarity=0.273  Sum_probs=71.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-----ceEEEEEEECCeEEEEEEEeCCCcc-------cchhhh-
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-----DFYRKEIEVDKAPCVLEILDTAGTE-------QFASMR-  169 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-----~~~~~~~~~~~~~~~l~l~DtpG~~-------~~~~~~-  169 (286)
                      -.++|+-+|..|.|||||++.|.+..+.....+...     ...++.+.-.+....++++||.|-.       .|..+. 
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd  120 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD  120 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence            458999999999999999999999888665444332     2223444556777889999999921       222211 


Q ss_pred             ------h-------------hcccC--ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        170 ------D-------------LYIKN--GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       170 ------~-------------~~~~~--~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                            .             ..+.+  .+++++.+..+.. ++..+...-  +.  .....+.||-++-|.|-.
T Consensus       121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvt--mk--~LdskVNIIPvIAKaDti  189 (406)
T KOG3859|consen  121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVT--MK--KLDSKVNIIPVIAKADTI  189 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHH--HH--HHhhhhhhHHHHHHhhhh
Confidence                  0             11222  5677777777653 444333211  11  122366777788888864

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.31  E-value=0.00073  Score=63.85  Aligned_cols=139  Identities=19%  Similarity=0.243  Sum_probs=73.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCC------------ccCCCcc-------ceEEEE--------------EEECCe
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFME------------KYDPTIE-------DFYRKE--------------IEVDKA  150 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~------------~~~~t~~-------~~~~~~--------------~~~~~~  150 (286)
                      .-.++++|+.|+||||++..|.......            .+..+..       +.....              ....+ 
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d-  334 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRN-  334 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccC-
Confidence            3468999999999999998887521100            0000000       000000              01112 


Q ss_pred             EEEEEEEeCCCcccchhh---hhhcccC---ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC
Q psy10504        151 PCVLEILDTAGTEQFASM---RDLYIKN---GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH  224 (286)
Q Consensus       151 ~~~l~l~DtpG~~~~~~~---~~~~~~~---~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~  224 (286)
                       +.+.++||+|.......   ....+..   ..-.++|+|++...  ..+.+..   ..+..  ...--+++||.|..  
T Consensus       335 -~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~---~~f~~--~~~~g~IlTKlDet--  404 (484)
T PRK06995        335 -KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVV---QAYRG--PGLAGCILTKLDEA--  404 (484)
T ss_pred             -CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHH---HHhcc--CCCCEEEEeCCCCc--
Confidence             24789999994432211   1111111   22377888887532  2232222   22211  22335678999965  


Q ss_pred             CCCCCHHHHHHHHHhcCCCEEEEeCCCCCcH-HHH
Q psy10504        225 QREVPTLDGQALAQSWGCPFIEASAKNKTNV-NEM  258 (286)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv-~~l  258 (286)
                         ...-....+....+.|+..++  +|++| +++
T Consensus       405 ---~~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL  434 (484)
T PRK06995        405 ---ASLGGALDVVIRYKLPLHYVS--NGQRVPEDL  434 (484)
T ss_pred             ---ccchHHHHHHHHHCCCeEEEe--cCCCChhhh
Confidence               123345667777888888886  77777 444

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.23  E-value=0.0014  Score=64.97  Aligned_cols=143  Identities=17%  Similarity=0.183  Sum_probs=75.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC-CCc-----------cCCCc-c------ceEEEEEEE--C----------CeEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF-MEK-----------YDPTI-E------DFYRKEIEV--D----------KAPCV  153 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~-----------~~~t~-~------~~~~~~~~~--~----------~~~~~  153 (286)
                      -.++|+|+.|+||||++..|..... ...           +.... .      +.....+..  +          -..+.
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D  265 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH  265 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence            4688999999999999988875321 100           00000 0      000000100  0          11234


Q ss_pred             EEEEeCCCcccchh----hhhhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC
Q psy10504        154 LEILDTAGTEQFAS----MRDLY--IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE  227 (286)
Q Consensus       154 l~l~DtpG~~~~~~----~~~~~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~  227 (286)
                      +.|+||+|-.....    .....  ....+-+++|+|++..  .+.+.+....+...... + +-=+|+||.|...    
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~-~-i~glIlTKLDEt~----  337 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGE-D-VDGCIITKLDEAT----  337 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccC-C-CCEEEEeccCCCC----
Confidence            88999999332221    11111  2234568899998742  23333333333221000 1 3357799999752    


Q ss_pred             CCHHHHHHHHHhcCCCEEEEeCCCCCcH-HHH
Q psy10504        228 VPTLDGQALAQSWGCPFIEASAKNKTNV-NEM  258 (286)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~vSa~~~~gv-~~l  258 (286)
                       ..-....+....+.|+..++  +|++| +++
T Consensus       338 -~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL  366 (767)
T PRK14723        338 -HLGPALDTVIRHRLPVHYVS--TGQKVPEHL  366 (767)
T ss_pred             -CccHHHHHHHHHCCCeEEEe--cCCCChhhc
Confidence             12345566677788888886  77777 444

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.20  E-value=0.00052  Score=56.43  Aligned_cols=65  Identities=22%  Similarity=0.215  Sum_probs=36.6

Q ss_pred             EEEEEEeCCCcccchhh--hhhc---ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        152 CVLEILDTAGTEQFASM--RDLY---IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~--~~~~---~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      ....++.+.|......+  ....   .-..+.++.|+|+.+-.........+......      -=++++||+|+.
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~------ADvIvlnK~D~~  154 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF------ADVIVLNKIDLV  154 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGH
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh------cCEEEEeccccC
Confidence            34667888886655544  1111   12357899999997643334444333332221      128889999987

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.19  E-value=0.0088  Score=55.23  Aligned_cols=93  Identities=16%  Similarity=0.092  Sum_probs=53.2

Q ss_pred             EEEEEEeCCCcccchhh----hhhcccC--cc-EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC
Q psy10504        152 CVLEILDTAGTEQFASM----RDLYIKN--GQ-GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH  224 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~----~~~~~~~--~d-~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~  224 (286)
                      +.+.++||+|......+    ...++..  .+ -.+||+|++..  ..++...+   ..+...  -+--+++||.|-.. 
T Consensus       255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~---~~~~~~--~~~~~I~TKlDet~-  326 (388)
T PRK12723        255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIF---HQFSPF--SYKTVIFTKLDETT-  326 (388)
T ss_pred             CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHH---HHhcCC--CCCEEEEEeccCCC-
Confidence            45889999996543321    1122222  23 58899999875  23333322   332111  13467889999751 


Q ss_pred             CCCCCHHHHHHHHHhcCCCEEEEeCCCCCcH-HHH
Q psy10504        225 QREVPTLDGQALAQSWGCPFIEASAKNKTNV-NEM  258 (286)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv-~~l  258 (286)
                          ..-....+....+.|+..++  +|+++ +++
T Consensus       327 ----~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl  355 (388)
T PRK12723        327 ----CVGNLISLIYEMRKEVSYVT--DGQIVPHNI  355 (388)
T ss_pred             ----cchHHHHHHHHHCCCEEEEe--CCCCChhhh
Confidence                12344556667788887776  67777 444

>PRK10867 signal recognition particle protein; Provisional

Probab=97.19  E-value=0.0018  Score=60.52  Aligned_cols=91  Identities=18%  Similarity=0.177  Sum_probs=51.2

Q ss_pred             EEEEEEeCCCcccchh-hhh---hc--ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCC
Q psy10504        152 CVLEILDTAGTEQFAS-MRD---LY--IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASH  224 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~-~~~---~~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~  224 (286)
                      +.+.++||||...... +..   .+  .-..+.+++|+|+..+   ++.......+..     .++ .-+|.||.|..  
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~-----~~~i~giIlTKlD~~--  253 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNE-----ALGLTGVILTKLDGD--  253 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHh-----hCCCCEEEEeCccCc--
Confidence            4588999999543222 111   11  1246778999998643   333333333332     122 35677999964  


Q ss_pred             CCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        225 QREVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      .+.   -.........+.|+.+++.  |+.+++
T Consensus       254 ~rg---G~alsi~~~~~~PI~fig~--Ge~v~D  281 (433)
T PRK10867        254 ARG---GAALSIRAVTGKPIKFIGT--GEKLDD  281 (433)
T ss_pred             ccc---cHHHHHHHHHCcCEEEEeC--CCcccc
Confidence            111   1255666777888877764  444443

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.19  E-value=0.0045  Score=52.58  Aligned_cols=62  Identities=27%  Similarity=0.366  Sum_probs=40.9

Q ss_pred             EEEEEeCC-CcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCC-CcEEEEEeCCCCC
Q psy10504        153 VLEILDTA-GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSER-VPILLVANKLDLA  222 (286)
Q Consensus       153 ~l~l~Dtp-G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~-~piivv~nK~Dl~  222 (286)
                      .+.++||- |.+.|.   +...+++|.+|+|+|.+- .++...+.........    + .++.+|+||.|-.
T Consensus       135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~el----g~k~i~~V~NKv~e~  198 (255)
T COG3640         135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEEL----GIKRIFVVLNKVDEE  198 (255)
T ss_pred             cEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHh----CCceEEEEEeeccch
Confidence            35566763 444333   556788999999999874 3555555443333332    4 7999999999953

>TIGR00959 ffh signal recognition particle protein

Probab=97.18  E-value=0.00055  Score=63.90  Aligned_cols=92  Identities=20%  Similarity=0.161  Sum_probs=52.8

Q ss_pred             EEEEEEeCCCcccchh-hhh---h--cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504        152 CVLEILDTAGTEQFAS-MRD---L--YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ  225 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~-~~~---~--~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~  225 (286)
                      +.+.++||||....+. +..   .  ..-..+.+++|+|+..+   ++.......+....   + ..-+|.||.|...  
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~-i~giIlTKlD~~~--  253 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---G-LTGVVLTKLDGDA--  253 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---C-CCEEEEeCccCcc--
Confidence            4588999999543322 111   1  12347889999998753   33333333333211   2 2356789999641  


Q ss_pred             CCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        226 REVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      +   .-.........+.|+.+++.  |+.+++
T Consensus       254 ~---~G~~lsi~~~~~~PI~fi~~--Ge~i~d  280 (428)
T TIGR00959       254 R---GGAALSVRSVTGKPIKFIGV--GEKIDD  280 (428)
T ss_pred             c---ccHHHHHHHHHCcCEEEEeC--CCChhh
Confidence            1   11256677778888877764  444444

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG2485|consensus

Probab=97.16  E-value=0.00066  Score=59.70  Aligned_cols=61  Identities=25%  Similarity=0.370  Sum_probs=39.8

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCC------CccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFM------EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      ..++.+.|+|-||+|||||+|++......      ....+..+......+.+..... +.++||||.-
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~-vy~iDTPGil  207 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPP-VYLIDTPGIL  207 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCc-eEEecCCCcC
Confidence            35789999999999999999999873221      2222333333333344444433 6789999943

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.16  E-value=0.0025  Score=45.85  Aligned_cols=97  Identities=19%  Similarity=0.263  Sum_probs=56.4

Q ss_pred             EEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh-hhhcccCccEEEEEEEC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM-RDLYIKNGQGFVVVYSL  185 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~-~~~~~~~~d~vilv~d~  185 (286)
                      +++.|..|+||||+...+...--...+         ...-++    .+.++|+++....... .......+|.++++++.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            678899999999998887763221111         111122    3789999986533321 14566788999999988


Q ss_pred             CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEe
Q psy10504        186 TNHHTFQDIKQMKELITRVKGSERVPILLVAN  217 (286)
Q Consensus       186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~n  217 (286)
                      +.. +....................+..++.|
T Consensus        69 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          69 EAL-AVLGARRLTEVVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             chh-hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence            654 3444433332233323333455555544

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.12  E-value=0.0021  Score=42.13  Aligned_cols=45  Identities=13%  Similarity=0.258  Sum_probs=28.5

Q ss_pred             cCccEEEEEEECCC--cccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCC
Q psy10504        174 KNGQGFVVVYSLTN--HHTFQDIKQMKELITRVKGSERVPILLVANKLD  220 (286)
Q Consensus       174 ~~~d~vilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~D  220 (286)
                      .-.+++++++|.+.  +-+.++-...+..+....  +++|+++|+||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence            34689999999997  445566666677777643  3899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.08  E-value=0.0043  Score=54.46  Aligned_cols=140  Identities=16%  Similarity=0.127  Sum_probs=75.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCC---------C-ccC-CCcc------ceEEEEEEE--C-------------Ce
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFM---------E-KYD-PTIE------DFYRKEIEV--D-------------KA  150 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~---------~-~~~-~t~~------~~~~~~~~~--~-------------~~  150 (286)
                      +.-+++++|++|+||||++..+......         . .+. ....      ......+..  +             ..
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~  153 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  153 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence            4469999999999999998877542110         0 000 0000      000001000  0             11


Q ss_pred             EEEEEEEeCCCcccchhh----hhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC
Q psy10504        151 PCVLEILDTAGTEQFASM----RDLYI--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH  224 (286)
Q Consensus       151 ~~~l~l~DtpG~~~~~~~----~~~~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~  224 (286)
                      .+.+.++||||.......    ...++  ...+-+++|+|++...  +++..+...+..     --+--+++||.|... 
T Consensus       154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~-----~~~~~~I~TKlDet~-  225 (270)
T PRK06731        154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD-----IHIDGIVFTKFDETA-  225 (270)
T ss_pred             CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC-----CCCCEEEEEeecCCC-
Confidence            346889999996533221    11122  2356789999986431  223332222221     123367789999752 


Q ss_pred             CCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHH
Q psy10504        225 QREVPTLDGQALAQSWGCPFIEASAKNKTNVN  256 (286)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~  256 (286)
                          ..-....+....+.|+..++  +|+++.
T Consensus       226 ----~~G~~l~~~~~~~~Pi~~it--~Gq~vp  251 (270)
T PRK06731        226 ----SSGELLKIPAVSSAPIVLMT--DGQDVK  251 (270)
T ss_pred             ----CccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence                12244566667788888776  666654

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.08  E-value=0.0046  Score=57.91  Aligned_cols=90  Identities=26%  Similarity=0.252  Sum_probs=51.7

Q ss_pred             EEEEEEeCCCcccchh----hhhhccc---CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC
Q psy10504        152 CVLEILDTAGTEQFAS----MRDLYIK---NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH  224 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~----~~~~~~~---~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~  224 (286)
                      +.+.++||||......    ....++.   ...-+.+|++++-.  ...+.+.+..+..   . + +--++.||.|-...
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~---~-~-~~~vI~TKlDet~~  372 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR---L-P-LDGLIFTKLDETSS  372 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC---C-C-CCEEEEeccccccc
Confidence            4588999999654431    1222222   23466788887643  2333333333222   1 1 23688999997521


Q ss_pred             CCCCCHHHHHHHHHhcCCCEEEEeCCCCCcH
Q psy10504        225 QREVPTLDGQALAQSWGCPFIEASAKNKTNV  255 (286)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv  255 (286)
                           .-....+....+.|+..++  +|.++
T Consensus       373 -----~G~i~~~~~~~~lPv~yit--~Gq~V  396 (424)
T PRK05703        373 -----LGSILSLLIESGLPISYLT--NGQRV  396 (424)
T ss_pred             -----ccHHHHHHHHHCCCEEEEe--CCCCC
Confidence                 2245666777888888776  66665

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.04  E-value=0.014  Score=52.63  Aligned_cols=65  Identities=8%  Similarity=0.111  Sum_probs=37.5

Q ss_pred             EEEEEEeCCCcccchhhhhhccc--------CccEEEEEEECCCcccH-HHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        152 CVLEILDTAGTEQFASMRDLYIK--------NGQGFVVVYSLTNHHTF-QDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~~~~~~--------~~d~vilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      ....+++|.|..+-..+...++.        ..++++.|+|+.+.... ++.......+..       -=+|++||+|+.
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-------AD~IvlnK~Dl~  163 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-------ADRILLTKTDVA  163 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-------CCEEEEeccccC
Confidence            34567899997765555444322        24789999999763221 111111122222       228889999997


Q ss_pred             C
Q psy10504        223 S  223 (286)
Q Consensus       223 ~  223 (286)
                      +
T Consensus       164 ~  164 (318)
T PRK11537        164 G  164 (318)
T ss_pred             C
Confidence            3

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=0.001  Score=68.60  Aligned_cols=112  Identities=17%  Similarity=0.168  Sum_probs=60.3

Q ss_pred             EEEECCCCCcHHHHHHHHhcCcCCCcc--CCCccce--EEEEEEECCeEEEEEEEeCCCcc--------cchhhhhhc--
Q psy10504        107 VVVLGSGGVGKSALTVQFVSGCFMEKY--DPTIEDF--YRKEIEVDKAPCVLEILDTAGTE--------QFASMRDLY--  172 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~~~~~~~--~~t~~~~--~~~~~~~~~~~~~l~l~DtpG~~--------~~~~~~~~~--  172 (286)
                      -+|+|++|+||||++..--..-.....  .......  .....-+.+.   -.++||+|-.        .-...|..+  
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~de---aVlIDtaGry~~q~s~~~~~~~~W~~fL~  204 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTDE---AVLIDTAGRYITQDSADEVDRAEWLGFLG  204 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccccc---eEEEcCCcceecccCcchhhHHHHHHHHH
Confidence            579999999999997544321111110  0000011  1111222333   4579999922        111223322  


Q ss_pred             -------ccCccEEEEEEECCCcccH---------HHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        173 -------IKNGQGFVVVYSLTNHHTF---------QDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       173 -------~~~~d~vilv~d~~~~~s~---------~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                             .+-.+|+|+++|+.+--+.         ..++.-+.++... -.-..|+.+++||.|+.
T Consensus       205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll  269 (1188)
T COG3523         205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLL  269 (1188)
T ss_pred             HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEeccccc
Confidence                   3557999999999863221         1122223334332 22378999999999987

>KOG2484|consensus

Probab=96.97  E-value=0.00074  Score=61.19  Aligned_cols=58  Identities=22%  Similarity=0.322  Sum_probs=39.5

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      .+.++++|+|-|++||||++|+|..... .....++.+.. -..+..+. .  +.|+|.||.-
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~s-mqeV~Ldk-~--i~llDsPgiv  308 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRS-MQEVKLDK-K--IRLLDSPGIV  308 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhh-hhheeccC-C--ceeccCCcee
Confidence            3679999999999999999999998665 23333343211 22222322 2  7899999943

>KOG1534|consensus

Probab=96.93  E-value=0.0019  Score=53.93  Aligned_cols=23  Identities=26%  Similarity=0.533  Sum_probs=20.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ++-..++|+.|+||||+.+.+..
T Consensus         3 ~ya~lV~GpAgSGKSTyC~~~~~   25 (273)
T KOG1534|consen    3 RYAQLVMGPAGSGKSTYCSSMYE   25 (273)
T ss_pred             ceeEEEEccCCCCcchHHHHHHH
Confidence            45678999999999999988875

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.89  E-value=0.0077  Score=55.92  Aligned_cols=138  Identities=18%  Similarity=0.122  Sum_probs=71.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCc-CCC---------cc-CCCc-c------ceEEEEEE-E----------CCeEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGC-FME---------KY-DPTI-E------DFYRKEIE-V----------DKAPCVL  154 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~-~~~---------~~-~~t~-~------~~~~~~~~-~----------~~~~~~l  154 (286)
                      ...++++|++|+||||++.+|.... ...         +. .... .      +.....+. .          ....+.+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            4568899999999999988887421 100         00 0000 0      00000000 0          1123347


Q ss_pred             EEEeCCCcccchh----hhhhccc-----CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504        155 EILDTAGTEQFAS----MRDLYIK-----NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ  225 (286)
Q Consensus       155 ~l~DtpG~~~~~~----~~~~~~~-----~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~  225 (286)
                      .++||||......    ....+++     ...-.+||+|++...  +++.........   . + +--++.||.|-..  
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~---~-~-~~glIlTKLDEt~--  373 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES---L-N-YRRILLTKLDEAD--  373 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC---C-C-CCEEEEEcccCCC--
Confidence            8999999642221    1122222     234688999987652  223222222211   1 1 3367789999751  


Q ss_pred             CCCCHHHHHHHHHhcCCCEEEEeCCCCCcH
Q psy10504        226 REVPTLDGQALAQSWGCPFIEASAKNKTNV  255 (286)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv  255 (286)
                         ..-....+....+.|+..++  +|+++
T Consensus       374 ---~~G~il~i~~~~~lPI~ylt--~GQ~V  398 (432)
T PRK12724        374 ---FLGSFLELADTYSKSFTYLS--VGQEV  398 (432)
T ss_pred             ---CccHHHHHHHHHCCCEEEEe--cCCCC
Confidence               12235566667788877776  44444

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.78  E-value=0.0063  Score=46.91  Aligned_cols=25  Identities=24%  Similarity=0.480  Sum_probs=21.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF  129 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~  129 (286)
                      .-+++.|++|+|||++++.+.....
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhh
Confidence            4588999999999999999987543

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG2423|consensus

Probab=96.73  E-value=0.00071  Score=61.27  Aligned_cols=82  Identities=17%  Similarity=0.128  Sum_probs=49.2

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCc--cCCCccceEEEEEEECCeEEEEEEEeCCCcccch--hhhhhcccC
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEK--YDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA--SMRDLYIKN  175 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~--~~~~~~~~~  175 (286)
                      .....+.|+++|-||+||||++|.|....+...  .++.+.-+...     -....+-++|+||.---.  ......   
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYI-----tLmkrIfLIDcPGvVyps~dset~iv---  374 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYI-----TLMKRIFLIDCPGVVYPSSDSETDIV---  374 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHH-----HHHhceeEecCCCccCCCCCchHHHH---
Confidence            345779999999999999999999998776443  22222211111     111236689999953211  111222   


Q ss_pred             ccEEEEEEECCCcc
Q psy10504        176 GQGFVVVYSLTNHH  189 (286)
Q Consensus       176 ~d~vilv~d~~~~~  189 (286)
                      ..+++-|=.+.+|+
T Consensus       375 LkGvVRVenv~~pe  388 (572)
T KOG2423|consen  375 LKGVVRVENVKNPE  388 (572)
T ss_pred             hhceeeeeecCCHH
Confidence            23566666666654

>KOG4273|consensus

Probab=96.67  E-value=0.022  Score=48.82  Aligned_cols=111  Identities=19%  Similarity=0.203  Sum_probs=64.1

Q ss_pred             eEEEEEECCCCC--cHHHHHHHHhcCcCCCccCCC-ccceEEEEEEECCeE----EEEEEEeCCCcccchhhhhhcccCc
Q psy10504        104 EFKVVVLGSGGV--GKSALTVQFVSGCFMEKYDPT-IEDFYRKEIEVDKAP----CVLEILDTAGTEQFASMRDLYIKNG  176 (286)
Q Consensus       104 ~~kV~ivG~~~~--GKTSLi~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~----~~l~l~DtpG~~~~~~~~~~~~~~~  176 (286)
                      .+-++++|.+|+  ||-+|+.+|....|....... ...+..  +.++++.    +.+.+.-  -.+++.--......-.
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hg--wtid~kyysadi~lcish--icde~~lpn~~~a~pl   79 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHG--WTIDNKYYSADINLCISH--ICDEKFLPNAEIAEPL   79 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeec--eEecceeeecceeEEeec--ccchhccCCcccccce
Confidence            356889999999  999999999887664433222 112222  2223222    1232222  1122221122233445


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCC
Q psy10504        177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLA  222 (286)
Q Consensus       177 d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~  222 (286)
                      .+++++||.+....+..+..|+..--..    ... ++.++||.|..
T Consensus        80 ~a~vmvfdlse~s~l~alqdwl~htdin----sfdillcignkvdrv  122 (418)
T KOG4273|consen   80 QAFVMVFDLSEKSGLDALQDWLPHTDIN----SFDILLCIGNKVDRV  122 (418)
T ss_pred             eeEEEEEeccchhhhHHHHhhccccccc----cchhheecccccccc
Confidence            7899999999998888888887632211    122 34566999965

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=96.63  E-value=0.0099  Score=52.62  Aligned_cols=104  Identities=9%  Similarity=0.100  Sum_probs=65.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccc----------------
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF----------------  165 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~----------------  165 (286)
                      .+.+.++++|++|-|||+++++|........ .+.            ...+.+..+.+|.....                
T Consensus        59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~  125 (302)
T PF05621_consen   59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DED------------AERIPVVYVQMPPEPDERRFYSAILEALGAPYR  125 (302)
T ss_pred             cCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCC------------CccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence            3567899999999999999999997533221 111            01112445566542111                


Q ss_pred             --------hhhhhhcccCccEEEEEEECCC---cccHHHHHHHHHHHHHHhCCCCCcEEEEEeC
Q psy10504        166 --------ASMRDLYIKNGQGFVVVYSLTN---HHTFQDIKQMKELITRVKGSERVPILLVANK  218 (286)
Q Consensus       166 --------~~~~~~~~~~~d~vilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piivv~nK  218 (286)
                              .......++...+=++++|=-+   ..+...-+..++.++.....-++|+|.||++
T Consensus       126 ~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~  189 (302)
T PF05621_consen  126 PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR  189 (302)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence                    1112345677888899999543   2344555666666666655668999999876

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=96.62  E-value=0.0054  Score=48.21  Aligned_cols=106  Identities=14%  Similarity=0.170  Sum_probs=60.5

Q ss_pred             EECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCc
Q psy10504        109 VLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH  188 (286)
Q Consensus       109 ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~  188 (286)
                      .-|..|+|||++...+....-.....-..-+   .........+.+.++|+|+..  .......+..+|.++++.+.+. 
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd---~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~-   78 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKLGKRVLLLD---ADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP-   78 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEE---CCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh-
Confidence            4567899999996655442110000000000   000000111558899999853  3334567889999999998864 


Q ss_pred             ccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        189 HTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       189 ~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      .++......+..+....  ...++.+|+|+.+..
T Consensus        79 ~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~  110 (139)
T cd02038          79 TSITDAYALIKKLAKQL--RVLNFRVVVNRAESP  110 (139)
T ss_pred             hHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence            45555555555554422  355788999999743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=96.62  E-value=0.039  Score=46.52  Aligned_cols=90  Identities=16%  Similarity=0.066  Sum_probs=54.3

Q ss_pred             EEEEEEEeCCCcccchhhh-hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCCC
Q psy10504        151 PCVLEILDTAGTEQFASMR-DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQREV  228 (286)
Q Consensus       151 ~~~l~l~DtpG~~~~~~~~-~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~~  228 (286)
                      .+.+.++|++|........ ....+.+|.+++++..+ ..++..+......+.......+.+ ..++.|+.+..     .
T Consensus       116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~-----~  189 (212)
T cd02117         116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD-----R  189 (212)
T ss_pred             CCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc-----c
Confidence            4668899998754322221 11124789999999774 445666666666666543332444 35888999853     2


Q ss_pred             CHHHHHHHHHhcCCCEEE
Q psy10504        229 PTLDGQALAQSWGCPFIE  246 (286)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~  246 (286)
                      .....+.+.+.++.+++.
T Consensus       190 ~~~~~~~~~~~~~~~vl~  207 (212)
T cd02117         190 ETELIDAFAERLGTQVIH  207 (212)
T ss_pred             HHHHHHHHHHHcCCCEEE
Confidence            234556777777766553

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=96.61  E-value=0.046  Score=44.29  Aligned_cols=84  Identities=11%  Similarity=0.079  Sum_probs=52.6

Q ss_pred             EEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHH
Q psy10504        153 VLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLD  232 (286)
Q Consensus       153 ~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~  232 (286)
                      .+.++|+|+....  .....+..+|.++++++.+. .++..+..++..+...   ......+++|+.|...   ......
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~---~~~~~~  134 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM---VEGGDM  134 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccc---cchhhH
Confidence            4889999986433  23455688999999998864 4566666655555542   1234678899998641   111222


Q ss_pred             HHHHHHhcCCCEE
Q psy10504        233 GQALAQSWGCPFI  245 (286)
Q Consensus       233 ~~~~~~~~~~~~~  245 (286)
                      .+.+.+.++.+++
T Consensus       135 ~~~~~~~~~~~v~  147 (179)
T cd02036         135 VEDIEEILGVPLL  147 (179)
T ss_pred             HHHHHHHhCCCEE
Confidence            3455666677654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=96.55  E-value=0.054  Score=49.27  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +-.++.|--|+|||||+++++..
T Consensus         5 pv~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         5 PVTIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhc
Confidence            34678999999999999999863

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.54  E-value=0.0019  Score=49.15  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .|+|.|.+||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999874

...

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=96.53  E-value=0.0087  Score=44.23  Aligned_cols=82  Identities=16%  Similarity=0.208  Sum_probs=49.5

Q ss_pred             EEEEC-CCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504        107 VVVLG-SGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL  185 (286)
Q Consensus       107 V~ivG-~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~  185 (286)
                      |++.| ..|+||||+...+....-....       ....+..+.. +.+.++|+|+....  .....+..+|.++++++.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~~-------~vl~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRGK-------RVLLIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCCC-------cEEEEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence            56666 5799999987666542111110       0111111211 55889999986432  234677889999999987


Q ss_pred             CCcccHHHHHHHHH
Q psy10504        186 TNHHTFQDIKQMKE  199 (286)
Q Consensus       186 ~~~~s~~~~~~~~~  199 (286)
                      + ..+++.+..++.
T Consensus        72 ~-~~s~~~~~~~~~   84 (104)
T cd02042          72 S-PLDLDGLEKLLE   84 (104)
T ss_pred             C-HHHHHHHHHHHH
Confidence            5 446666666555

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.50  E-value=0.0056  Score=55.25  Aligned_cols=96  Identities=24%  Similarity=0.147  Sum_probs=66.0

Q ss_pred             EEeCCCcc-cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHH
Q psy10504        156 ILDTAGTE-QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQ  234 (286)
Q Consensus       156 l~DtpG~~-~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~  234 (286)
                      +-+.|||. ++.......+...|+++-|+|+.+|.+.....  +..+..     +.|.++|+||+|+.  .......-.+
T Consensus        14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~--l~~~v~-----~k~~i~vlNK~DL~--~~~~~~~W~~   84 (322)
T COG1161          14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPE--LERIVK-----EKPKLLVLNKADLA--PKEVTKKWKK   84 (322)
T ss_pred             ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCcc--HHHHHc-----cCCcEEEEehhhcC--CHHHHHHHHH
Confidence            45557865 55566777889999999999999987554432  122222     55669999999997  2222344445


Q ss_pred             HHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        235 ALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       235 ~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      .+....+...+.++++.+.+...+..
T Consensus        85 ~~~~~~~~~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          85 YFKKEEGIKPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             HHHhcCCCccEEEEeecccCccchHH
Confidence            55555577788899998887777664

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.48  E-value=0.0028  Score=42.49  Aligned_cols=21  Identities=29%  Similarity=0.447  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..+|.|+.|+|||||++++.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998865

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=96.47  E-value=0.0068  Score=45.34  Aligned_cols=100  Identities=16%  Similarity=0.196  Sum_probs=56.8

Q ss_pred             ECCCCCcHHHHHHHHhcCcCCC-ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCc
Q psy10504        110 LGSGGVGKSALTVQFVSGCFME-KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH  188 (286)
Q Consensus       110 vG~~~~GKTSLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~  188 (286)
                      =+..|+||||+...|....-.. ...-..     ......... .+.++|+|+...  ......+..+|.++++++.+ .
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l-----~d~d~~~~~-D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~   76 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRVLL-----VDLDLQFGD-DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQD-L   76 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcEEE-----EECCCCCCC-CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC-h
Confidence            3457899999866664421111 100000     000000000 478999998643  33445678899999999775 4


Q ss_pred             ccHHHHHHHHHHHHHHhCCCCCcEEEEEeC
Q psy10504        189 HTFQDIKQMKELITRVKGSERVPILLVANK  218 (286)
Q Consensus       189 ~s~~~~~~~~~~i~~~~~~~~~piivv~nK  218 (286)
                      .+...+..+...+......+...+.+|+|+
T Consensus        77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            567777777776665432213466777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=96.46  E-value=0.0052  Score=50.26  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=28.4

Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       177 d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      |++++|+|+.++.+..+ ..+...+.  ....++|+++|+||+|+.
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~--l~~~~kp~IlVlNK~DL~   43 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL--QAGGNKKLVLVLNKIDLV   43 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH--hccCCCCEEEEEehhhcC
Confidence            78999999998754332 12222211  112368999999999996

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.30  E-value=0.045  Score=44.97  Aligned_cols=24  Identities=17%  Similarity=0.292  Sum_probs=21.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .-.++++|+.|+|||||++.+.+-
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQ   48 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcC
Confidence            347899999999999999998874

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK08118 topology modulation protein; Reviewed

Probab=96.28  E-value=0.0034  Score=51.11  Aligned_cols=22  Identities=45%  Similarity=0.768  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +|+|+|++|||||||...+...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998863

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.23  E-value=0.038  Score=51.07  Aligned_cols=84  Identities=18%  Similarity=0.118  Sum_probs=48.6

Q ss_pred             EEEEEEeCCCcccchh-hhh-----hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcE-EEEEeCCCCCCC
Q psy10504        152 CVLEILDTAGTEQFAS-MRD-----LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPI-LLVANKLDLASH  224 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~-~~~-----~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ivv~nK~Dl~~~  224 (286)
                      +.+.++||+|-...+. +..     .-.-+.|=+++|+|+.-++...+...   .+..     .+++ =|++||.|..  
T Consensus       183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~---aF~e-----~l~itGvIlTKlDGd--  252 (451)
T COG0541         183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAK---AFNE-----ALGITGVILTKLDGD--  252 (451)
T ss_pred             CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHH---HHhh-----hcCCceEEEEcccCC--
Confidence            4588999999443332 111     12345788999999987754444333   2222     3343 4678999975  


Q ss_pred             CCCCCHHHHHHHHHhcCCCEEEEe
Q psy10504        225 QREVPTLDGQALAQSWGCPFIEAS  248 (286)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~vS  248 (286)
                      .+-   -.........+.|+-++.
T Consensus       253 aRG---GaALS~~~~tg~PIkFiG  273 (451)
T COG0541         253 ARG---GAALSARAITGKPIKFIG  273 (451)
T ss_pred             Ccc---hHHHhhHHHHCCCeEEEe
Confidence            221   123334455677766665

>PRK01889 GTPase RsgA; Reviewed

Probab=96.20  E-value=0.0045  Score=56.69  Aligned_cols=23  Identities=43%  Similarity=0.622  Sum_probs=21.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -+++++|.+|+|||||++.+.+.
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~  218 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGE  218 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHh
Confidence            47999999999999999999874

>PRK07261 topology modulation protein; Provisional

Probab=96.20  E-value=0.004  Score=50.87  Aligned_cols=21  Identities=33%  Similarity=0.650  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +|+|+|.+|+|||||...+..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            799999999999999999865

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.19  E-value=0.0063  Score=51.26  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=21.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +..-|+|+|++|+|||||+++|...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            5566889999999999999999763

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.17  E-value=0.063  Score=51.56  Aligned_cols=89  Identities=15%  Similarity=0.203  Sum_probs=51.2

Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCC-cEEEEEeCCCCCCCCCCCC-------HHHHHHHHHhcCCCEEEEe
Q psy10504        177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERV-PILLVANKLDLASHQREVP-------TLDGQALAQSWGCPFIEAS  248 (286)
Q Consensus       177 d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~-piivv~nK~Dl~~~~~~~~-------~~~~~~~~~~~~~~~~~vS  248 (286)
                      .-+|||=|.=+--..+. ..+...+..+...... |+|++++=+|.........       ..-...+....++..+.+.
T Consensus       133 ~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FN  211 (519)
T PF03215_consen  133 KKVILVEDLPNVFHRDT-SRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFN  211 (519)
T ss_pred             ceEEEeeccccccchhH-HHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEec
Confidence            34566656543222222 3344444444444455 9999999655432211111       1112344556678888888


Q ss_pred             CCCCCcHHHHHHHHHHHh
Q psy10504        249 AKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       249 a~~~~gv~~l~~~i~~~i  266 (286)
                      +-...-+.+.+..|+..-
T Consensus       212 pIa~T~mkKaL~rI~~~E  229 (519)
T PF03215_consen  212 PIAPTFMKKALKRILKKE  229 (519)
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            888888888888888765

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.15  E-value=0.0045  Score=50.93  Aligned_cols=22  Identities=32%  Similarity=0.681  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +|+|+|+|||||||+..+|...
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999875

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.12  E-value=0.004  Score=50.24  Aligned_cols=22  Identities=23%  Similarity=0.489  Sum_probs=17.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999864

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.12  E-value=0.0043  Score=48.56  Aligned_cols=20  Identities=30%  Similarity=0.612  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10504        107 VVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~  126 (286)
                      |+++|++|+||||+++.+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999974

...

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.09  E-value=0.0054  Score=42.05  Aligned_cols=21  Identities=24%  Similarity=0.542  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~  127 (286)
                      |++.|.+|+||||+.+++...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999865

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK04195 replication factor C large subunit; Provisional

Probab=96.04  E-value=0.061  Score=51.32  Aligned_cols=23  Identities=26%  Similarity=0.508  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .-++|.|++|+||||+++.+...
T Consensus        40 ~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         40 KALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            45889999999999999999874

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.03  E-value=0.0055  Score=51.51  Aligned_cols=25  Identities=32%  Similarity=0.384  Sum_probs=21.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +.=.++|+|++|||||||++.+-.-
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~L   51 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNGL   51 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3457899999999999999988653

>PRK14737 gmk guanylate kinase; Provisional

Probab=95.99  E-value=0.0062  Score=50.48  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .-|+|+|++|||||||+++|+..
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            45899999999999999999874

>PF05729 NACHT: NACHT domain

Probab=95.97  E-value=0.028  Score=44.66  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ++|.|.+|+|||+++.++...
T Consensus         3 l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            689999999999999998874

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.96  E-value=0.0059  Score=47.44  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++|+|+.|+|||||++.+.+.
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CEEEEEccCCCccccceeeeccc
Confidence            36899999999999999998875

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.95  E-value=0.0059  Score=52.34  Aligned_cols=21  Identities=38%  Similarity=0.548  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -|+++|++|+|||||++-+.+
T Consensus        31 fvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            388999999999999999987

>KOG1533|consensus

Probab=95.94  E-value=0.005  Score=52.26  Aligned_cols=21  Identities=38%  Similarity=0.548  Sum_probs=16.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHh
Q psy10504        105 FKVVVLGSGGVGKSALTVQFV  125 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~  125 (286)
                      +-.+|+|+||+||||.++-..
T Consensus         3 fgqvVIGPPgSGKsTYc~g~~   23 (290)
T KOG1533|consen    3 FGQVVIGPPGSGKSTYCNGMS   23 (290)
T ss_pred             cceEEEcCCCCCccchhhhHH
Confidence            346799999999999865443

>PRK14530 adenylate kinase; Provisional

Probab=95.94  E-value=0.0061  Score=51.60  Aligned_cols=23  Identities=22%  Similarity=0.534  Sum_probs=20.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..+|+|+|.|||||||+.+.|..
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998865

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=95.92  E-value=0.056  Score=48.37  Aligned_cols=143  Identities=15%  Similarity=0.171  Sum_probs=75.8

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCC------Ccc----------------ceEEEE-------EEE-----
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDP------TIE----------------DFYRKE-------IEV-----  147 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~------t~~----------------~~~~~~-------~~~-----  147 (286)
                      .++..++++|-.|+||||-+-.|...-......-      |-+                +.+...       +-+     
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~  216 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA  216 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence            3578899999999999998777765111111000      000                111100       000     


Q ss_pred             -CCeEEEEEEEeCCCcccch-hh------hhhcccC-----ccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEE
Q psy10504        148 -DKAPCVLEILDTAGTEQFA-SM------RDLYIKN-----GQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPIL  213 (286)
Q Consensus       148 -~~~~~~l~l~DtpG~~~~~-~~------~~~~~~~-----~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~pii  213 (286)
                       ....+.+.++||+|--.-. .+      ..+....     .+-++++.|++-+. +++..+.    +...   -++- -
T Consensus       217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~----F~ea---v~l~-G  288 (340)
T COG0552         217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI----FNEA---VGLD-G  288 (340)
T ss_pred             HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH----HHHh---cCCc-e
Confidence             0122458899999932111 11      1112222     34488888998764 2233222    2221   1222 4


Q ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        214 LVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       214 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      +++||.|.. +.--    ....++...+.|+.++-  -|+++++|-
T Consensus       289 iIlTKlDgt-AKGG----~il~I~~~l~~PI~fiG--vGE~~~DL~  327 (340)
T COG0552         289 IILTKLDGT-AKGG----IILSIAYELGIPIKFIG--VGEGYDDLR  327 (340)
T ss_pred             EEEEecccC-CCcc----eeeeHHHHhCCCEEEEe--CCCChhhcc
Confidence            678999965 2221    12445677889988886  577777763

>TIGR00235 udk uridine kinase

Probab=95.92  E-value=0.0078  Score=50.62  Aligned_cols=25  Identities=16%  Similarity=0.319  Sum_probs=22.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ++..-|+|.|++|+|||||++.+.+
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHH
Confidence            3567799999999999999999976

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.91  E-value=0.0064  Score=51.73  Aligned_cols=22  Identities=32%  Similarity=0.377  Sum_probs=19.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      =-|+|+|++|||||||++-+-+
T Consensus        32 e~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          32 EFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999998865

>KOG0780|consensus

Probab=95.85  E-value=0.0053  Score=55.67  Aligned_cols=66  Identities=17%  Similarity=0.112  Sum_probs=36.9

Q ss_pred             eEEEEEEEeCCCcccc-hhhhhh-----cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        150 APCVLEILDTAGTEQF-ASMRDL-----YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       150 ~~~~l~l~DtpG~~~~-~~~~~~-----~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      ..+.+.++||.|-... .++...     -.-..|-+|+|+|++-+..-+.....+..-..      +- -+++||.|..
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vd------vg-~vIlTKlDGh  253 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVD------VG-AVILTKLDGH  253 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhc------cc-eEEEEecccC
Confidence            3456889999994322 222221     12347899999999876544443332222111      11 3556787764

>PRK08233 hypothetical protein; Provisional

Probab=95.83  E-value=0.0088  Score=48.81  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=21.5

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +..-|+|.|.+|+|||||.++|...
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhh
Confidence            3467889999999999999999863

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.72  E-value=0.0082  Score=45.76  Aligned_cols=21  Identities=19%  Similarity=0.417  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~  127 (286)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999764

...

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=95.66  E-value=0.0061  Score=50.01  Aligned_cols=25  Identities=32%  Similarity=0.511  Sum_probs=21.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGC  128 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~  128 (286)
                      ..=+++.|++|+||||++++|....
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            4558899999999999999999865

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=95.65  E-value=0.011  Score=45.10  Aligned_cols=26  Identities=19%  Similarity=0.277  Sum_probs=22.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFM  130 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~  130 (286)
                      ..++++|++|+|||+++..+......
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            46899999999999999999875443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.64  E-value=0.05  Score=43.90  Aligned_cols=24  Identities=29%  Similarity=0.290  Sum_probs=21.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .-.++++|+.|+|||||++.+.+.
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~i~G~   49 (163)
T cd03216          26 GEVHALLGENGAGKSTLMKILSGL   49 (163)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346899999999999999999875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=95.64  E-value=0.01  Score=46.64  Aligned_cols=21  Identities=38%  Similarity=0.665  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~  127 (286)
                      |+|+|++|+|||||++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999874

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=95.63  E-value=0.0094  Score=47.04  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .|+|+|+.|+|||||+..|++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999875

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=95.63  E-value=0.0098  Score=45.54  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~  127 (286)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999875

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=95.62  E-value=0.16  Score=44.27  Aligned_cols=67  Identities=16%  Similarity=0.099  Sum_probs=39.7

Q ss_pred             EEEEEEEeCCCcccchhhh-hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEE-EEEeC
Q psy10504        151 PCVLEILDTAGTEQFASMR-DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL-LVANK  218 (286)
Q Consensus       151 ~~~l~l~DtpG~~~~~~~~-~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-vv~nK  218 (286)
                      .+.+.++||||......+. ......+|.+++++..+ +.++..+......+.......+.++. ++.|+
T Consensus       116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~  184 (270)
T cd02040         116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNS  184 (270)
T ss_pred             CCCEEEEecccCcccCCcccccccccccEEEEEecCc-hHHHHHHHHHHHHHHHhCccCCCceEEEEEec
Confidence            3568899998864322221 22233589999998775 45666666665555554333356665 44465

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=95.62  E-value=0.0098  Score=49.13  Aligned_cols=22  Identities=23%  Similarity=0.444  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++|+|++|+|||||++.+...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999999764

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=95.60  E-value=1  Score=36.69  Aligned_cols=143  Identities=12%  Similarity=0.160  Sum_probs=96.8

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      +..+...|+++|.-+.++..|..++....-      +    ....+....      -.=.|  .+....+    ...|.+
T Consensus        11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~------~----~~l~Vh~a~------sLPLp--~e~~~lR----prIDlI   68 (176)
T PF11111_consen   11 PELNTATILLVGTEEALLQQLAEAMLEEDK------E----FKLKVHLAK------SLPLP--SENNNLR----PRIDLI   68 (176)
T ss_pred             CCcceeEEEEecccHHHHHHHHHHHHhhcc------c----eeEEEEEec------cCCCc--ccccCCC----ceeEEE
Confidence            345678999999999999999999986210      0    111111111      01111  1112122    357999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      +|++|....-+++.++.-+..+-..... + .+.++.+-.... +...+...+..+++..+.+|++.+.-.+.++...+-
T Consensus        69 VFvinl~sk~SL~~ve~SL~~vd~~ffl-G-KVCfl~t~a~~~-~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lA  145 (176)
T PF11111_consen   69 VFVINLHSKYSLQSVEASLSHVDPSFFL-G-KVCFLATNAGRE-SHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLA  145 (176)
T ss_pred             EEEEecCCcccHHHHHHHHhhCChhhhc-c-ceEEEEcCCCcc-cccccCHHHHHHHHHHhCCCEEEeecccchHHHHHH
Confidence            9999999999999988766655432222 2 345555555544 445677888999999999999999999999998888


Q ss_pred             HHHHHHhh
Q psy10504        260 AEIVREMN  267 (286)
Q Consensus       260 ~~i~~~i~  267 (286)
                      +.|++.++
T Consensus       146 qRLL~~lq  153 (176)
T PF11111_consen  146 QRLLRMLQ  153 (176)
T ss_pred             HHHHHHHH
Confidence            88888765

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PRK06217 hypothetical protein; Validated

Probab=95.57  E-value=0.011  Score=48.64  Aligned_cols=23  Identities=17%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .+|+|+|.+|+||||+..+|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999863

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=95.55  E-value=0.039  Score=43.10  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=21.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGC  128 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~  128 (286)
                      -.|++.|+.|+|||||++.+...-
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            358999999999999999998853

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.54  E-value=0.011  Score=44.26  Aligned_cols=21  Identities=29%  Similarity=0.757  Sum_probs=18.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHh
Q psy10504        105 FKVVVLGSGGVGKSALTVQFV  125 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~  125 (286)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            458999999999999999975

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK05480 uridine/cytidine kinase; Provisional

Probab=95.53  E-value=0.014  Score=49.10  Aligned_cols=25  Identities=16%  Similarity=0.380  Sum_probs=22.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +...|+|.|++|||||||.+.+...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            5688999999999999999998764

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=95.52  E-value=0.011  Score=48.41  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++|+|++||||||+++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=95.46  E-value=0.036  Score=43.74  Aligned_cols=21  Identities=33%  Similarity=0.686  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ++|.|++|+|||+++..+...
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~   22 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALN   22 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHH
Confidence            679999999999999998764

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>KOG2423|consensus

Probab=95.42  E-value=0.074  Score=48.62  Aligned_cols=101  Identities=15%  Similarity=0.155  Sum_probs=67.3

Q ss_pred             hhhhcc---cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCE
Q psy10504        168 MRDLYI---KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPF  244 (286)
Q Consensus       168 ~~~~~~---~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  244 (286)
                      +|...|   ...|++|-|+|+.||-... ....-..+..  ..+.+++|.|+||+||.  .-.+...-...+.+.+..-.
T Consensus       203 IW~ELyKViDSSDVvvqVlDARDPmGTr-c~~ve~ylkk--e~phKHli~vLNKvDLV--Ptwvt~~Wv~~lSkeyPTiA  277 (572)
T KOG2423|consen  203 IWGELYKVIDSSDVVVQVLDARDPMGTR-CKHVEEYLKK--EKPHKHLIYVLNKVDLV--PTWVTAKWVRHLSKEYPTIA  277 (572)
T ss_pred             HHHHHHHhhcccceeEEeeeccCCcccc-cHHHHHHHhh--cCCcceeEEEeeccccc--cHHHHHHHHHHHhhhCccee
Confidence            454444   5689999999999975332 1222222332  55789999999999997  23334455667777777777


Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhhcCCCCc
Q psy10504        245 IEASAKNKTNVNEMFAEIVREMNFNPEKD  273 (286)
Q Consensus       245 ~~vSa~~~~gv~~l~~~i~~~i~~~~~~~  273 (286)
                      |..|..+..|=..+++.+.+..+-...++
T Consensus       278 fHAsi~nsfGKgalI~llRQf~kLh~dkk  306 (572)
T KOG2423|consen  278 FHASINNSFGKGALIQLLRQFAKLHSDKK  306 (572)
T ss_pred             eehhhcCccchhHHHHHHHHHHhhccCcc
Confidence            88888888887777777666555443333

>TIGR03263 guanyl_kin guanylate kinase

Probab=95.42  E-value=0.013  Score=47.89  Aligned_cols=22  Identities=36%  Similarity=0.617  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .|+++|++|+|||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4889999999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=95.39  E-value=0.014  Score=47.80  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ...|+++|.+||||||+++.+..
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999974

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=95.34  E-value=0.015  Score=47.78  Aligned_cols=23  Identities=35%  Similarity=0.449  Sum_probs=20.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .=.++|+|++|+|||||+|-+.+
T Consensus        25 ge~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          25 GEIVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             CcEEEEECCCCccHHHHHHHHHh
Confidence            45799999999999999998877

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=95.32  E-value=0.02  Score=46.84  Aligned_cols=25  Identities=16%  Similarity=0.243  Sum_probs=21.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +.+-++|+|.+|+|||||+.++...
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHH
Confidence            3457899999999999999999864

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=95.31  E-value=0.013  Score=48.73  Aligned_cols=21  Identities=19%  Similarity=0.510  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~  127 (286)
                      |+|.|++|||||||.+.+.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=95.31  E-value=0.052  Score=41.76  Aligned_cols=24  Identities=17%  Similarity=0.283  Sum_probs=20.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .--|++-|+-|+|||||++.+...
T Consensus        15 g~vi~L~GdLGaGKTtf~r~l~~~   38 (123)
T PF02367_consen   15 GDVILLSGDLGAGKTTFVRGLARA   38 (123)
T ss_dssp             -EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999999874

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.30  E-value=0.015  Score=47.68  Aligned_cols=23  Identities=39%  Similarity=0.434  Sum_probs=20.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHh
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFV  125 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~  125 (286)
                      +.-.++++|+.|+|||||++.+.
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            34578999999999999999885

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=95.30  E-value=0.057  Score=49.12  Aligned_cols=26  Identities=19%  Similarity=0.487  Sum_probs=22.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGC  128 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~  128 (286)
                      ...+|+|.|++|+|||||++++....
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~i  186 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISAI  186 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHccc
Confidence            35789999999999999999998753

>PRK03839 putative kinase; Provisional

Probab=95.29  E-value=0.015  Score=47.66  Aligned_cols=22  Identities=23%  Similarity=0.493  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +|+++|.+|+||||+.+++...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988763

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=95.29  E-value=0.016  Score=49.02  Aligned_cols=24  Identities=29%  Similarity=0.270  Sum_probs=21.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .=.++++|+.|+|||||++.+.+-
T Consensus        30 G~~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          30 GEFVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            346899999999999999999874

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=95.29  E-value=0.014  Score=50.63  Aligned_cols=22  Identities=32%  Similarity=0.373  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      --++++|+.|+|||||++.+.+
T Consensus        29 ~i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          29 EITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3478999999999999999987

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=95.28  E-value=0.016  Score=47.89  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=21.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .-.++++|++|+|||||++.+.+.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            346899999999999999999874

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.24  E-value=0.017  Score=48.56  Aligned_cols=23  Identities=30%  Similarity=0.340  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++++|+.|+|||||++.+.+-
T Consensus        28 ~~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          28 EFVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.23  E-value=0.016  Score=49.41  Aligned_cols=21  Identities=33%  Similarity=0.569  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -|+++|++|+|||||++.+-+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            489999999999999999877

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.22  E-value=0.017  Score=48.78  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -.++++|+.|+|||||++.+.+-
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        30 EMVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999874

>PRK10646 ADP-binding protein; Provisional

Probab=95.21  E-value=0.085  Score=42.18  Aligned_cols=22  Identities=23%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -|++-|+-|+|||||++.+...
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~   51 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQA   51 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999874

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=95.19  E-value=0.018  Score=49.62  Aligned_cols=25  Identities=28%  Similarity=0.590  Sum_probs=22.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ..++++|+|++|+|||+|+..++..
T Consensus        12 ~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   12 DPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh
Confidence            5589999999999999998888764

This is thought to be an ATPase involved in viral DNA packaging [].

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=95.18  E-value=0.017  Score=47.82  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        19 e~~~i~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        19 EVLALLGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999998874

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.18  E-value=0.018  Score=48.24  Aligned_cols=23  Identities=22%  Similarity=0.328  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++++|+.|+|||||++.+.+-
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl   49 (205)
T cd03226          27 EIIALTGKNGAGKTTLAKILAGL   49 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	286
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		2e-59
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-49
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		3e-49
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		5e-49
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		4e-48
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-40
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-40
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		8e-40
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		8e-40
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-39
4q21_A	189	Molecular Switch For Signal Transduction: Structura		1e-39
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		3e-39
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		3e-39
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		9e-39
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		9e-39
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		9e-39
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		9e-39
1wq1_R	166	Ras-Rasgap Complex Length = 166		1e-38
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-38
6q21_A	171	Molecular Switch For Signal Transduction: Structura		1e-38
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		1e-38
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-38
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-38
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-38
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-38
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-38
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-38
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-38
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-38
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-38
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-38
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		1e-38
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		1e-38
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-38
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		2e-38
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		2e-38
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-38
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		3e-38
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		3e-38
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		3e-38
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-38
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		3e-38
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		4e-38
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-38
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		4e-38
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		5e-38
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-37
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		2e-37
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		5e-37
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		8e-35
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		8e-34
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		1e-33
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-33
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		2e-33
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		1e-32
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-32
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		2e-32
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		6e-32
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-31
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		1e-29
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		1e-29
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		1e-29
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		1e-29
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		2e-29
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		3e-26
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		2e-24
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		7e-23
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		8e-23
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		8e-23
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		9e-22
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		5e-20
4fmc_B	171	Espg-Rab1 Complex Length = 171		5e-20
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		5e-20
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		6e-20
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		6e-20
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		7e-20
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		8e-20
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		8e-20
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-19
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		1e-19
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		3e-19
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		3e-19
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		3e-19
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		8e-19
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		9e-19
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		3e-18
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		2e-17
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		3e-17
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		6e-17
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		6e-17
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		7e-17
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		8e-17
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-16
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		2e-16
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		3e-16
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		6e-16
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		9e-16
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-15
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		1e-15
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-15
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-15
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-15
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		1e-15
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-15
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-15
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-15
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		1e-15
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-15
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		1e-15
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		1e-15
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-15
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-15
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-15
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-15
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-15
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-15
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		3e-15
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		3e-15
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		4e-15
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		4e-15
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		4e-15
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		6e-15
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		6e-15
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		8e-15
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		1e-14
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		1e-14
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-14
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-14
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		3e-14
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		3e-14
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		4e-14
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		5e-14
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		5e-14
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		5e-14
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		7e-14
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		7e-14
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		7e-14
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		7e-14
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		9e-14
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-13
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-13
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-13
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-13
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-13
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-13
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-13
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		4e-13
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		5e-13
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		7e-13
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		8e-13
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		8e-13
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-12
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-12
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-12
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-12
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-12
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-12
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-12
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		2e-12
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		3e-12
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		3e-12
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		5e-12
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		6e-12
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		6e-12
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		6e-12
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		1e-11
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-11
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		2e-11
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-11
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		3e-11
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		4e-11
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		4e-11
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		5e-11
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		5e-11
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		6e-11
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		8e-11
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		9e-11
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		9e-11
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		1e-10
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		1e-10
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		1e-10
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		1e-10
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		1e-10
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		2e-10
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-10
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		2e-10
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-10
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-10
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		4e-10
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		5e-10
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		5e-10
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		5e-10
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		6e-10
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		8e-10
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		9e-10
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		9e-10
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		9e-10
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		9e-10
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		9e-10
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-09
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		1e-09
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		1e-09
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-09
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		1e-09
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		1e-09
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		1e-09
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		1e-09
2bku_A	177	Kap95p:rangtp Complex Length = 177		1e-09
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-09
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-09
1byu_A	216	Canine Gdp-Ran Length = 216		3e-09
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		3e-09
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		5e-09
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		5e-09
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		6e-09
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		6e-09
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		7e-09
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		8e-09
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		9e-09
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		9e-09
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		1e-08
1mh1_A	186	Small G-Protein Length = 186		1e-08
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		1e-08
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		1e-08
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		1e-08
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		1e-08
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		1e-08
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-08
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		1e-08
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-08
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-08
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		2e-08
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-08
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		2e-08
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-08
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		2e-08
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		2e-08
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		3e-08
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		3e-08
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		4e-08
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		4e-08
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		4e-08
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		4e-08
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		4e-08
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		4e-08
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		5e-08
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		5e-08
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		5e-08
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		5e-08
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		8e-08
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		9e-08
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-07
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		1e-07
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		1e-07
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		1e-07
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		1e-07
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-07
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		1e-07
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-07
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		1e-07
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		1e-07
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-07
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		2e-07
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		3e-07
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		4e-07
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		6e-07
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		6e-07
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		6e-07
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		6e-07
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		6e-07
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		6e-07
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		7e-07
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		7e-07
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		7e-07
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		7e-07
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		7e-07
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		7e-07
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		1e-06
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-06
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		2e-06
2kb0_A	178	Cdc42(T35a) Length = 178		2e-06
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		3e-06
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		4e-06
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		8e-05
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		9e-05
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		1e-04
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		8e-04
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		8e-04
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		8e-04

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score =  225 bits (573), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/167 (64%), Positives = 131/167 (78%), Gaps = 1/167 (0%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MRE+             ALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  E+VP++LV NK+DL
Sbjct: 61  TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120
Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNF 268
            S +    +  G+ALA+ WGCPF+E SAK+KT V+E+FAEIVR+MN+
Sbjct: 121 ESEREVSSSE-GRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/168 (55%), Positives = 121/168 (72%), Gaps = 2/168 (1%)
Query: 101 TMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
           +MRE+             ALTVQFV G F+EKYDPTIED YRK++EVD   C+LEILDTA
Sbjct: 2   SMREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTA 61
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
           GTEQF +MRDLY+KNGQGF +VYS+T   TF D++ ++E I RVK ++ VP++LV NK D
Sbjct: 62  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 121
Query: 221 LASHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMN 267
           L   +R V    GQ LA+ W  C F+E+SAK+K NVNE+F ++VR++N
Sbjct: 122 L-EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQIN 168

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score =  191 bits (485), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/167 (55%), Positives = 120/167 (71%), Gaps = 2/167 (1%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MRE+             ALTVQFV G F+EKYDPTIED YRK++EVD   C+LEILDTAG
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 60
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQF +MRDLY+KNGQGF +VYS+T   TF D++ ++E I RVK ++ VP++LV NK DL
Sbjct: 61  TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL 120
Query: 222 ASHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMN 267
              +R V    GQ LA+ W  C F+E+SAK+K NVNE+F ++VR++N
Sbjct: 121 -EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQIN 166

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score =  191 bits (484), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 94/167 (56%), Positives = 120/167 (71%), Gaps = 2/167 (1%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MRE+             ALTVQFV G F+EKYDPTIED YRK++EVD   C+LEILDTAG
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQF +MRDLY+KNGQGF +VYS+T   TF D++ ++E I RVK +E VP++LV NK DL
Sbjct: 61  TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 222 ASHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMN 267
              +R V    GQ LA+ W  C F+E+SAK+K NVNE+F ++VR++N
Sbjct: 121 -EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score =  187 bits (476), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 92/167 (55%), Positives = 120/167 (71%), Gaps = 2/167 (1%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MRE+             ALTVQFV G F+++YDPTIED YRK++EVD   C+LEILDTAG
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQF +MRDLY+KNGQGF +VYS+T   TF D++ ++E I RVK +E VP++LV NK DL
Sbjct: 61  TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 222 ASHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMN 267
              +R V    GQ LA+ W  C F+E+SAK+K NVNE+F ++VR++N
Sbjct: 121 -EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score =  160 bits (405), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 75/154 (48%), Positives = 109/154 (70%), Gaps = 2/154 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 19  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 78
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI   +E I RVK SE VP++LV NK DL S  R V T   Q LA+
Sbjct: 79  FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS--RTVDTKQAQDLAR 136
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEK 272
           S+G PFIE SAK +  V++ F  +VRE+  + EK
Sbjct: 137 SYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score =  160 bits (405), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 75/154 (48%), Positives = 109/154 (70%), Gaps = 2/154 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 19  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 78
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI   +E I RVK SE VP++LV NK DL S  R V T   Q LA+
Sbjct: 79  FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS--RTVDTKQAQDLAR 136
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEK 272
           S+G PFIE SAK +  V++ F  +VRE+  + EK
Sbjct: 137 SYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score =  160 bits (405), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 75/154 (48%), Positives = 109/154 (70%), Gaps = 2/154 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 19  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 78
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI   +E I RVK SE VP++LV NK DL S  R V T   Q LA+
Sbjct: 79  FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS--RTVDTKQAQDLAR 136
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEK 272
           S+G PFIE SAK +  V++ F  +VRE+  + EK
Sbjct: 137 SYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score =  160 bits (405), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 75/154 (48%), Positives = 109/154 (70%), Gaps = 2/154 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 36  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEG 95
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI   +E I RVK SE VP++LV NK DL S  R V T   Q LA+
Sbjct: 96  FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTKQAQDLAR 153
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEK 272
           S+G PFIE SAK +  V++ F  +VRE+  + EK
Sbjct: 154 SYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 187

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 73/149 (48%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+EKYDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/171 (43%), Positives = 113/171 (66%), Gaps = 8/171 (4%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM------NFNPEKDNASFCWCSSC 283
           S+G P+IE SAK +  V + F  +VRE+        NP  ++   C    C
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPGCMSCKC 186

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score =  158 bits (400), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 74/153 (48%), Positives = 108/153 (70%), Gaps = 2/153 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 19  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 78
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI   +E I RVK SE VP++LV NK DL S  R V T   Q LA+
Sbjct: 79  FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTKQAQDLAR 136
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
           S+G PFIE SAK +  V++ F  +VRE+  + E
Sbjct: 137 SYGIPFIETSAKTRQGVDDAFYTLVREIRKHKE 169

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score =  158 bits (400), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F++KYDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score =  157 bits (396), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score =  157 bits (396), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 73/166 (43%), Positives = 111/166 (66%), Gaps = 2/166 (1%)
Query: 101 TMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
           +M E+             ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTA
Sbjct: 7   SMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 66
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
           G E++++MRD Y++ G+GF+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK D
Sbjct: 67  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 126
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           LA+  R V +   Q LA+S+G P+IE SAK +  V + F  +VRE+
Sbjct: 127 LAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score =  156 bits (395), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 111/167 (66%), Gaps = 2/167 (1%)
Query: 101 TMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
           +M E+             ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTA
Sbjct: 5   SMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 64
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
           G E++++MRD Y++ G+GF+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK D
Sbjct: 65  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 124
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           LA+  R V +   Q LA+S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 125 LAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 111/167 (66%), Gaps = 2/167 (1%)
Query: 101 TMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
           +M E+             ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTA
Sbjct: 5   SMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 64
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
           G E++++MRD Y++ G+GF+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK D
Sbjct: 65  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 124
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           LA+  R V +   Q LA+S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 125 LAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/148 (47%), Positives = 107/148 (72%), Gaps = 2/148 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
           S+G P+IE SAK +  V + F  +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 111/167 (66%), Gaps = 2/167 (1%)
Query: 101 TMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
           +M E+             ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTA
Sbjct: 5   SMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 64
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
           G E++++MRD Y++ G+GF+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK D
Sbjct: 65  GLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 124
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           LA+  R V +   Q LA+S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 125 LAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score =  156 bits (394), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 106/147 (72%), Gaps = 2/147 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVRE 265
           S+G P+IE SAK +  V + F  +VRE
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVRE 162

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV N+ DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA   R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score =  155 bits (392), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDP+IED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score =  155 bits (391), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDT G E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score =  155 bits (391), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 70/148 (47%), Positives = 107/148 (72%), Gaps = 2/148 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDP+IED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 24  ALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 83
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 84  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 141
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
           S+G P+IE SAK +  V + F  +VRE+
Sbjct: 142 SYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  155 bits (391), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDT G E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score =  155 bits (391), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTA  E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score =  154 bits (390), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F++++DPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score =  154 bits (390), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIE+ YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score =  154 bits (390), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTA  E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score =  154 bits (390), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E+ ++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/148 (47%), Positives = 106/148 (71%), Gaps = 2/148 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++ DPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
           S+G P+IE SAK +  V + F  +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/148 (47%), Positives = 106/148 (71%), Gaps = 2/148 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D    +L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DLA+  R V +   Q LA+
Sbjct: 78  FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
           S+G P+IE SAK +  V + F  +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score =  151 bits (381), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/148 (47%), Positives = 103/148 (69%), Gaps = 2/148 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 36  ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+++ N  +F DI   +E I RVK S+ VP++LV NK DL +  R V T     LA+
Sbjct: 96  FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAK 153
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
           S+G PFIE SAK +  V + F  +VRE+
Sbjct: 154 SYGIPFIETSAKTRQGVEDAFYTLVREI 181

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score =  144 bits (362), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 103/147 (70%), Gaps = 2/147 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+QF    F+++YDPTIED YRK  E+D    +L++LDTAG E+F++MR+ Y++ G G
Sbjct: 33  ALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F++VYS+T+  +F+ + +  +LI RVK  E  P++LVANK+DL  H R+V    G+ +A 
Sbjct: 93  FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM-HLRKVTRDQGKEMAT 151
Query: 239 SWGCPFIEASAKNKT-NVNEMFAEIVR 264
            +  P+IE SAK+   NV++ F ++VR
Sbjct: 152 KYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score =  140 bits (353), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 100/146 (68%), Gaps = 1/146 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+QF+   F+  YDPTIED Y K+  +D     L+ILDTAG E+F +MR+ Y++ G+G
Sbjct: 20  ALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEG 79
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F++V+S+T+  +F++I + +  I RVK  +  P++L+ NK DL  HQR+V   +GQ LA+
Sbjct: 80  FLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL-DHQRQVTQEEGQQLAR 138
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVR 264
                ++EASAK + NV++ F E+VR
Sbjct: 139 QLKVTYMEASAKIRMNVDQAFHELVR 164

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 101/147 (68%), Gaps = 2/147 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+QF    F++ YDPTIED Y K  E+D    +L++LDTAG E+F++MR+ Y++ G G
Sbjct: 33  ALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F++VYS+T+  +F+ + +  +LI RVK  E  P++LVANK+DL  H R+V    G+ +A 
Sbjct: 93  FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM-HLRKVTRDQGKEMAT 151
Query: 239 SWGCPFIEASAKNKT-NVNEMFAEIVR 264
            +  P+IE SAK+   NV++ F ++VR
Sbjct: 152 KYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 100/147 (68%), Gaps = 2/147 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+QF    F+  YDPTIED Y K  E+D    +L++LDTAG E+F++MR+ Y++ G G
Sbjct: 28  ALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 87
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F++VYS+T+  +F+ + +  +LI RVK  E  P++LVANK+DL  H R+V    G+ +A 
Sbjct: 88  FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM-HLRKVTRDQGKEMAT 146
Query: 239 SWGCPFIEASAKNKT-NVNEMFAEIVR 264
            +  P+IE SAK+   NV++ F ++VR
Sbjct: 147 KYNIPYIETSAKDPPLNVDKTFHDLVR 173

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 101/147 (68%), Gaps = 2/147 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+QF    F+ +YDPTIED Y K  E+D    +L++LDTAG E+F++MR+ Y++ G G
Sbjct: 33  ALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F++VYS+T+  +F+ + +  +LI RVK  E  P++LVANK+DL  H R+V    G+ +A 
Sbjct: 93  FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM-HLRKVTRDQGKEMAT 151
Query: 239 SWGCPFIEASAKNKT-NVNEMFAEIVR 264
            +  P+IE SAK+   NV++ F ++VR
Sbjct: 152 KYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+QF+   F+E Y+PT  D YRK++ +D     ++ILDTAG E +A++RD Y ++G+G
Sbjct: 22  ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEG 81
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSE-RVPILLVANKLDLASHQREVPTLDGQALA 237
           F++V+S+T H +F    + +E I RVK  E ++P+L+V NK DL   +R+VP  + ++ A
Sbjct: 82  FLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL-EERRQVPVEEARSKA 140
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
           + WG  ++E SAK + NV+++F +++RE+      +N
Sbjct: 141 EEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSEN 177

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score =  136 bits (342), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+QF+   F+E Y+PT  D YRK++ +D     ++ILDTAG E +A++RD Y ++G+G
Sbjct: 18  ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSE-RVPILLVANKLDLASHQREVPTLDGQALA 237
           F++V+S+T H +F    + +E I RVK  E ++P+L+V NK DL   +R+VP  + ++ A
Sbjct: 78  FLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL-EERRQVPVEEARSKA 136
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
           + WG  ++E SAK + NV+++F +++RE+      +N
Sbjct: 137 EEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSEN 173

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 101/157 (64%), Gaps = 8/157 (5%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           +L ++FV G F + Y PTIED YR+ I  DK+ C L+I DT G+ QF +M+ L I  G  
Sbjct: 23  SLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGS-ERVPILLVANKLDLASHQREVPTLDGQALA 237
           F++V+S+T+  + +++  + +LI ++KGS E +P++LV NK D    QREV T + QA+A
Sbjct: 83  FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD--ETQREVDTREAQAVA 140
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIV-----REMNFN 269
           Q W C F+E SAK   NV E+F E++     R M+ N
Sbjct: 141 QEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLN 177

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score =  134 bits (337), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 96/146 (65%), Gaps = 2/146 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           +L ++FV G F E Y PT+ED YR+ I  DK+ C L+I DT G+ QF +M+ L I  G  
Sbjct: 18  SLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHA 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGS-ERVPILLVANKLDLASHQREVPTLDGQALA 237
           F++VYS+T+  + +++K + E I  +KG  E +PI+LV NK D  S  REV + + +ALA
Sbjct: 78  FILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD-ESPSREVQSSEAEALA 136
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIV 263
           ++W C F+E SAK   NV E+F E++
Sbjct: 137 RTWKCAFMETSAKLNHNVKELFQELL 162

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 94/146 (64%), Gaps = 1/146 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+QF+   F+  YDPTIED Y K   VD  P  L+ILDTAG E+F +MR+ Y++ G G
Sbjct: 24  ALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F++V+++ +  +F ++ ++   I RVK  +  P++LV NK DL S QR+VP  +  A   
Sbjct: 84  FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES-QRQVPRSEASAFGA 142
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVR 264
           S    + EASAK + NV+E F ++VR
Sbjct: 143 SHHVAYFEASAKLRLNVDEAFEQLVR 168

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+QF+   F+E Y+PT  D YRK++ +D     ++ILDTAG E +A++RD Y ++G+G
Sbjct: 33  ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+S+T   +F      +E I RVK  E VP LLV NK DL   +R+V   + +  A+
Sbjct: 93  FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVEEAKNRAE 151
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
            W   ++E SAK + NV+++F +++RE+     +D+
Sbjct: 152 QWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 187

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+QF+   F+E Y+PT  D YRK++ +D     ++ILDTAG E +A++RD Y ++G+G
Sbjct: 21  ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 80
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+S+T   +F      +E I RVK  E VP LLV NK DL   +R+V   + +  A+
Sbjct: 81  FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVEEAKNRAE 139
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
            W   ++E SAK + NV+++F +++RE+     +D+
Sbjct: 140 QWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 175

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+QF+   F+E Y+PT  D YRK++ +D     ++ILDTAG E +A++RD Y ++G+G
Sbjct: 21  ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEG 80
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+S+T   +F      +E I RVK  E VP LLV NK DL   +R+V   + +  A+
Sbjct: 81  FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVEEAKNRAE 139
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
            W   ++E SAK + NV+++F +++RE+     +D+
Sbjct: 140 QWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 175

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+QF+   F+E Y+PT  D YRK++ +D     ++ILDTAG E +A++RD Y ++G+G
Sbjct: 29  ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+S+T   +F      +E I RVK  E VP LLV NK DL   +R+V   + +  A+
Sbjct: 89  FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVEEAKNRAE 147
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
            W   ++E SAK + NV+++F +++RE+     +D+
Sbjct: 148 QWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 183

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALT+QF+   F+E Y+PT  D YRK++ +D     ++ILDTAG E +A++RD Y ++G+G
Sbjct: 19  ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 78
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           F+ V+S+T   +F      +E I RVK  E VP LLV NK DL   +R+V   + +  A 
Sbjct: 79  FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVEEAKNRAD 137
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
            W   ++E SAK + NV+++F +++RE+
Sbjct: 138 QWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           +L  QFV G F E YDPT+E+ Y K + + K    L ++DTAG ++++ +   +I    G
Sbjct: 39  SLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           +V+VYS+T+ H+FQ I+ + + +    G  RVP++LV NK DL S +REV  ++G+ LA+
Sbjct: 99  YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL-SPEREVQAVEGKKLAE 157
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
           SWG  F+E+SA+       +F ++++E+
Sbjct: 158 SWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 93/150 (62%), Gaps = 3/150 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           AL V+F++  F+ +YDPT+E  YR +  +D     +EILDTAG E     R+ +++ G+G
Sbjct: 43  ALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           FV+VY +T+  +F+++  +K ++  +K  + V ++LV NK DL  H R+V T +G+ LA 
Sbjct: 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL-DHSRQVSTEEGEKLAT 160
Query: 239 SWGCPFIEASA-KNKTNVNEMFAEIVREMN 267
              C F E SA   + N+ E+F E+ RE+ 
Sbjct: 161 ELACAFYECSACTGEGNITEIFYELCREVR 190

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score =  104 bits (259), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 92/147 (62%), Gaps = 1/147 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           +LT+QFV G F++ YDPTIE+ + K I V+     L+++DTAG ++++     Y  +  G
Sbjct: 16  SLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 75
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           +++VYS+T+  +F+ IK +   +  + G  ++PI+LV NK DL   +R +   +G+ALA+
Sbjct: 76  YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAE 134
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVRE 265
           SW   F+E+SAK      ++F  I+ E
Sbjct: 135 SWNAAFLESSAKENQTAVDVFRRIILE 161

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score =  103 bits (258), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 92/147 (62%), Gaps = 1/147 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           +LT+QFV G F++ YDPTIE+ + K I V+     L+++DTAG ++++     Y  +  G
Sbjct: 21  SLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           +++VYS+T+  +F+ IK +   +  + G  ++PI+LV NK DL   +R +   +G+ALA+
Sbjct: 81  YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAE 139
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVRE 265
           SW   F+E+SAK      ++F  I+ E
Sbjct: 140 SWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score =  103 bits (258), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 92/147 (62%), Gaps = 1/147 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           +LT+QFV G F++ YDPTIE+ + K I V+     L+++DTAG ++++     Y  +  G
Sbjct: 21  SLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           +++VYS+T+  +F+ IK +   +  + G  ++PI+LV NK DL   +R +   +G+ALA+
Sbjct: 81  YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAE 139
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVRE 265
           SW   F+E+SAK      ++F  I+ E
Sbjct: 140 SWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score =  100 bits (249), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 91/147 (61%), Gaps = 1/147 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           +LT+QFV G F++  DPTIE+ + K I V+     L+++DTAG ++++     Y  +  G
Sbjct: 19  SLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 78
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
           +++VYS+T+  +F+ IK +   +  + G  ++PI+LV NK DL   +R +   +G+ALA+
Sbjct: 79  YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAE 137
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVRE 265
           SW   F+E+SAK      ++F  I+ E
Sbjct: 138 SWNAAFLESSAKENQTAVDVFRRIILE 164

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L ++F    + E Y  TI  DF  + IE+D     L+I DTAG E+F ++   Y +   G
Sbjct: 15  LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 74
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            +VVY +T+  +F ++KQ  + I R   SE V  LLV NK DL + ++ V     +  A 
Sbjct: 75  IIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTT-KKVVDYTTAKEFAD 132
Query: 239 SWGCPFIEASAKNKTNVNEMF----AEIVREM 266
           S G PF+E SAKN TNV + F    AEI + M
Sbjct: 133 SLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L ++F    + E Y  TI  DF  + IE+D     L+I DTAG E+F ++   Y +   G
Sbjct: 22  LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 81
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            +VVY +T+  +F ++KQ  + I R   SE V  LLV NK DL + ++ V     +  A 
Sbjct: 82  IIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTT-KKVVDYTTAKEFAD 139
Query: 239 SWGCPFIEASAKNKTNVNEMF----AEIVREM 266
           S G PF+E SAKN TNV + F    AEI + M
Sbjct: 140 SLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L ++F    + E Y  TI  DF  + IE+D     L+I DTAG E+F ++   Y +   G
Sbjct: 32  LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            +VVY +T+  +F ++KQ  + I R   SE V  LLV NK DL + ++ V     +  A 
Sbjct: 92  IIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTT-KKVVDYTTAKEFAD 149
Query: 239 SWGCPFIEASAKNKTNVNEMF----AEIVREM 266
           S G PF+E SAKN TNV + F    AEI + M
Sbjct: 150 SLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L ++F    + E Y  TI  DF  + IE+D     L+I DTAG E+F ++   Y +   G
Sbjct: 22  LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 81
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            +VVY +T+  +F ++KQ  + I R   SE V  LLV NK DL + ++ V     +  A 
Sbjct: 82  IIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTT-KKVVDYTTAKEFAD 139
Query: 239 SWGCPFIEASAKNKTNVNEMF----AEIVREM 266
           S G PF+E SAKN TNV + F    AEI + M
Sbjct: 140 SLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L ++F    + E Y  TI  DF  + IE+D     L+I DTAG E+F ++   Y +   G
Sbjct: 32  LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            +VVY +T+  +F ++KQ  + I R   SE V  LLV NK DL + ++ V     +  A 
Sbjct: 92  IIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTT-KKVVDYTTAKEFAD 149
Query: 239 SWGCPFIEASAKNKTNVNEMF----AEIVREMN 267
           S G PF+E SAKN TNV + F    AEI + M 
Sbjct: 150 SLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 182

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L ++F    + E Y  TI  DF  + IE+D     L+I DTAG E+F ++   Y +   G
Sbjct: 41  LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 100
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            +VVY +T+  +F ++KQ  + I R   SE V  LLV NK DL + ++ V     +  A 
Sbjct: 101 IIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTT-KKVVDYTTAKEFAD 158
Query: 239 SWGCPFIEASAKNKTNVNEMF----AEIVREMN 267
           S G PF+E SAKN TNV + F    AEI + M 
Sbjct: 159 SLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 191

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L ++F    + E Y  TI  DF  + IE+D     L+I DTAG E+F ++   Y +   G
Sbjct: 25  LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            +VVY +T+  ++ ++KQ  + I R   SE V  LLV NK DL + ++ V     +  A 
Sbjct: 85  IIVVYDVTDQESYANVKQWLQEIDRY-ASENVNKLLVGNKSDLTT-KKVVDNTTAKEFAD 142
Query: 239 SWGCPFIEASAKNKTNVNEMF----AEIVREMN 267
           S G PF+E SAKN TNV + F    AEI + M 
Sbjct: 143 SLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 83/154 (53%), Gaps = 7/154 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L ++F    + E Y  TI  DF  + IE+D     L+I DTAG E+F ++   Y +   G
Sbjct: 25  LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            +VVY +T+  ++ ++KQ  + I R   SE V  LLV NK DL + ++ V     +  A 
Sbjct: 85  IIVVYDVTDQESYANVKQWLQEIDRY-ASENVNKLLVGNKSDLTT-KKVVDNTTAKEFAD 142
Query: 239 SWGCPFIEASAKNKTNVNEMF----AEIVREMNF 268
           S G PF+E SAKN TNV + F    AEI + M  
Sbjct: 143 SLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGL 176

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 7/150 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L V+FV   F   +  TI  DF  K ++++     L+I DTAG E+F ++   Y +   G
Sbjct: 19  LLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMG 78
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            ++VY +T+  TF +IKQ  + +     ++   +LLV NK D+ +  R V    G+ALA+
Sbjct: 79  IILVYDITDERTFTNIKQWFKTVNE-HANDEAQLLLVGNKSDMET--RVVTADQGEALAK 135
Query: 239 SWGCPFIEASAKNKTNVNEMF---AEIVRE 265
             G PFIE+SAKN  NVNE+F   A++++E
Sbjct: 136 ELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 80/148 (54%), Gaps = 3/148 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L ++F    + E Y  TI  DF  + IE+D     L+I DTAG E+F ++   Y +   G
Sbjct: 49  LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            +VVY +T+  +F ++KQ  + I R   SE V  LLV NK DL + ++ V     +  A 
Sbjct: 109 IIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTT-KKVVDYTTAKEFAD 166
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
           S G PF+E SAKN TNV + F     E+
Sbjct: 167 SLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 87/150 (58%), Gaps = 7/150 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L V+FV   F   +  TI  DF  K ++++     L++ DTAG E+F ++   Y +   G
Sbjct: 36  LLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            ++VY +T+  TF +IKQ  + +     ++   +LLV NK D+ +  R V    G+ALA+
Sbjct: 96  IILVYDVTDERTFTNIKQWFKTVNE-HANDEAQLLLVGNKSDMET--RVVTADQGEALAK 152
Query: 239 SWGCPFIEASAKNKTNVNEMF---AEIVRE 265
             G PFIE+SAKN  NVNE+F   A++++E
Sbjct: 153 ELGIPFIESSAKNDDNVNEIFFTLAKLIQE 182

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 87/150 (58%), Gaps = 7/150 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L V+FV   F   +  TI  DF  K ++++     L++ DTAG E+F ++   Y +   G
Sbjct: 23  LLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 82
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            ++VY +T+  TF +IKQ  + +     ++   +LLV NK D+ +  R V    G+ALA+
Sbjct: 83  IILVYDVTDERTFTNIKQWFKTVNE-HANDEAQLLLVGNKSDMET--RVVTADQGEALAK 139
Query: 239 SWGCPFIEASAKNKTNVNEMF---AEIVRE 265
             G PFIE+SAKN  NVNE+F   A++++E
Sbjct: 140 ELGIPFIESSAKNDDNVNEIFFTLAKLIQE 169

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L V+FV   F   +  TI  DF  K ++++     L+I DTAG E+F ++   Y +   G
Sbjct: 19  LLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAXG 78
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            ++VY +T+  TF +IKQ  + +     ++   +LLV NK D  +  R V    G+ALA+
Sbjct: 79  IILVYDITDERTFTNIKQWFKTVNE-HANDEAQLLLVGNKSDXET--RVVTADQGEALAK 135
Query: 239 SWGCPFIEASAKNKTNVNEMF---AEIVRE 265
             G PFIE+SAKN  NVNE+F   A++++E
Sbjct: 136 ELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L V+FV   F   +  TI  DF  K ++++     L++ DTAG E+F ++   Y +   G
Sbjct: 19  LLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXG 78
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            ++VY +T+  TF +IKQ  + +     ++   +LLV NK D  +  R V    G+ALA+
Sbjct: 79  IILVYDVTDERTFTNIKQWFKTVNE-HANDEAQLLLVGNKSDXET--RVVTADQGEALAK 135
Query: 239 SWGCPFIEASAKNKTNVNEMF---AEIVRE 265
             G PFIE+SAKN  NVNE+F   A++++E
Sbjct: 136 ELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 90.5 bits (223), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 82/153 (53%), Gaps = 7/153 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L ++F    + E Y  TI  DF  + IE+D     L+I DTAG E+F ++   Y +   G
Sbjct: 24  LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            +VVY +T+  +F ++KQ  + I R   SE V  LLV  K DL + ++ V     +  A 
Sbjct: 84  IIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGIKCDLTT-KKVVDYTTAKEFAD 141
Query: 239 SWGCPFIEASAKNKTNVNEMF----AEIVREMN 267
           S G PF+E SAKN TNV + F    AEI + M 
Sbjct: 142 SLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 174

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L ++F    + + Y  TI  DF  + I ++     L+I DTAG E+F ++   Y +   G
Sbjct: 25  LLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHG 84
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            ++VY +T+  +F ++KQ  + I R    E V  LLV NK DL S +R V + +G+ LA 
Sbjct: 85  IIIVYDVTDRDSFDNVKQWIQEIDRY-AMENVNKLLVGNKCDLVS-KRVVTSDEGRELAD 142
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
           S G  FIE SAKN  NV + F  +  E+
Sbjct: 143 SHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 83/150 (55%), Gaps = 4/150 (2%)
Query: 120 LTVQFVSGCFME-KYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           L V+F  G F+   +  T+  DF  K ++VD     L++ DTAG E+F S+   Y ++  
Sbjct: 26  LLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
             +++Y +TN  +F +I+     I        V ++L+ NK+D ++H+R V   DG+ LA
Sbjct: 86  ALLLLYDVTNKASFDNIQAWLTEIHEY-AQHDVALMLLGNKVD-SAHERVVKREDGEKLA 143
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           + +G PF+E SAK   NV+  F  I +E+ 
Sbjct: 144 KEYGLPFMETSAKTGLNVDLAFTAIAKELK 173

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 82/150 (54%), Gaps = 5/150 (3%)
Query: 119 ALTVQFVSGCFMEKYDPTIED-FYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L ++FV G F E  + TI+  F  + + +D      EI DTAG E++ S+  +Y +  Q
Sbjct: 20  SLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 79
Query: 178 GFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236
             +VVY +TN  TF   K  +KEL  + + S  + I L  NK DLAS +R V   + QA 
Sbjct: 80  AAIVVYDITNTDTFARAKNWVKEL--QRQASPNIVIALAGNKADLAS-KRAVEFQEAQAY 136
Query: 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           A      F+E SAK   NVNE+F  I +++
Sbjct: 137 ADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 81/150 (54%), Gaps = 5/150 (3%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L ++FV G F E  + TI   F  + + +D      EI DTAG E++ S+  +Y +  Q
Sbjct: 18  SLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 77
Query: 178 GFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236
             +VVY +TN  TF   K  +KEL  + + S  + I L  NK DLAS +R V   + QA 
Sbjct: 78  AAIVVYDITNTDTFARAKNWVKEL--QRQASPNIVIALAGNKADLAS-KRAVEFQEAQAY 134
Query: 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           A      F+E SAK   NVNE+F  I +++
Sbjct: 135 ADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           ALTV+F++  F+ +YDP +ED Y  E  VD  P  L ++DTA  +   +  + Y+     
Sbjct: 36  ALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94
Query: 179 FVVVYSLTNHHTFQDIKQMKELIT-RVKGSER-VPILLVANKLDLASHQREVPTLDGQAL 236
           F+VVYS+ +  +F       EL+    K ++R +P LL+ NKLD+A + R+V   +G AL
Sbjct: 95  FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY-RQVTKAEGVAL 153
Query: 237 AQSWGCPFIEASA-KNKTNVNEMFAEIVRE 265
           A  +GC F E SA  +  +V  +F E VRE
Sbjct: 154 AGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 84.3 bits (207), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 81/150 (54%), Gaps = 5/150 (3%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L ++FV G F E  + TI   F  + + +D      EI DTAG E++ S+  +Y +  Q
Sbjct: 20  SLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQ 79
Query: 178 GFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236
             +VVY +TN  TF   K  +KEL  + + S  + I L  NK DLAS +R V   + QA 
Sbjct: 80  AAIVVYDITNTDTFARAKNWVKEL--QRQASPNIVIALAGNKADLAS-KRAVEFQEAQAY 136
Query: 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           A      F+E SAK   NVNE+F  I +++
Sbjct: 137 ADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 83/150 (55%), Gaps = 4/150 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L  +F    F E    T+  DF  K +E+      L+I DTAG E+F S+   Y ++ +
Sbjct: 41  SLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
           G ++VY +T   TF D+ +  ++I +   SE   +LLV NKLD  +  RE+    G+  A
Sbjct: 101 GIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETD-REITRQQGEKFA 158
Query: 238 QS-WGCPFIEASAKNKTNVNEMFAEIVREM 266
           Q   G  F EASAK+  NV+E+F ++V ++
Sbjct: 159 QQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L ++FV   F+E  + TI   F+ + + V+ A    EI DTAG E++ S+  +Y +   
Sbjct: 27  SLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86
Query: 178 GFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236
             ++V+ +TN  +F+  K+ ++EL  + +G+  + + L  NK DL    R+V   D Q  
Sbjct: 87  AAIIVFDVTNQASFERAKKWVQEL--QAQGNPNMVMALAGNKSDLLDA-RKVTAEDAQTY 143
Query: 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           AQ  G  F+E SAK  TNV E+F EI R +
Sbjct: 144 AQENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 6/145 (4%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           ++ ++FVS  F E  +PTI   F  + + +++     EI DTAG E+FAS+   Y +N Q
Sbjct: 18  SIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQ 77
Query: 178 GFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASH--QREVPTLDGQ 234
             +VVY +T   +F   +  +KEL    + S+ + I LV NK+D      +R+V   +G+
Sbjct: 78  AALVVYDVTKPQSFIKARHWVKEL--HEQASKDIIIALVGNKIDXLQEGGERKVAREEGE 135
Query: 235 ALAQSWGCPFIEASAKNKTNVNEMF 259
            LA+  G  F E SAK   NVN++F
Sbjct: 136 KLAEEKGLLFFETSAKTGENVNDVF 160

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 81/150 (54%), Gaps = 5/150 (3%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L ++FV G F E  + TI   F  + + +D      EI DTAG E++ S+  +Y +  Q
Sbjct: 23  SLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 82
Query: 178 GFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236
             +VVY +TN  TF   K  +KEL  + + S  + I L  NK DLA ++R V   + QA 
Sbjct: 83  AAIVVYDITNQETFARAKTWVKEL--QRQASPSIVIALAGNKADLA-NKRMVEYEEAQAY 139
Query: 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           A      F+E SAK   NVN++F  I +++
Sbjct: 140 ADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 7/184 (3%)
Query: 90  LLPRCSIDNSFTMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD 148
           L+PR S  +  + + +             +  ++     F E    T+  DF  K + VD
Sbjct: 14  LVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVD 73
Query: 149 KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSE 208
               VL++ DTAG E+F S+   Y +   G +++Y +T   +F +I++  ++I      E
Sbjct: 74  GERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHE 132
Query: 209 RVPILLVANKLDL-----ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263
            VPI+LV NK D+        Q+ VP   G+ LA ++G  F E SAK+ +N+ E    + 
Sbjct: 133 TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLA 192
Query: 264 REMN 267
           RE+ 
Sbjct: 193 REVK 196

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
           +F  + I+VD      +I DTAG E++ ++   Y +   G ++VY +  H T++++++ +
Sbjct: 56  EFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL 115
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
           KEL  R      + I+LV NK DL  H R VPT + +A A+  G  FIE SA + TNV  
Sbjct: 116 KEL--RDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 172
Query: 258 MFAEIVREM 266
            F  I+ E+
Sbjct: 173 AFQTILTEI 181

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
           +F  + I+VD      +I DTAG E++ ++   Y +   G ++VY +  H T++++++ +
Sbjct: 44  EFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL 103
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
           KEL  R      + I+LV NK DL  H R VPT + +A A+  G  FIE SA + TNV  
Sbjct: 104 KEL--RDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 160
Query: 258 MFAEIVREM 266
            F  I+ E+
Sbjct: 161 AFQTILTEI 169

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTA 160
           +R+F             +L  +F+   F   Y  TI  DF  K + ++     L++ DTA
Sbjct: 4   LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 63
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
           G E+F S+   YI++    VVVY +TN ++FQ   +  + +   +GS+ V I+LV NK D
Sbjct: 64  GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD-VIIMLVGNKTD 122
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262
           LA  +R+V   +G+  A+     FIE SAK   NV ++F  +
Sbjct: 123 LA-DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L ++FV G F E  + TI   F  + + +D      EI DTAG E++ S+  +Y +  Q
Sbjct: 22  SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 81
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
             +VVY +TN  +F   K   + + R + S  + I L  NK DLA ++R V   + Q+ A
Sbjct: 82  AAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 139
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
                 F+E SAK   NVNE+F  I +++
Sbjct: 140 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L ++FV G F E  + TI   F  + + +D      EI DTAG E++ S+  +Y +  Q
Sbjct: 21  SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 80
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
             +VVY +TN  +F   K   + + R + S  + I L  NK DLA ++R V   + Q+ A
Sbjct: 81  AAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 138
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
                 F+E SAK   NVNE+F  I +++
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L ++FV G F E  + TI   F  + + +D      EI DTAG E++ S+  +Y +  Q
Sbjct: 21  SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 80
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
             +VVY +TN  +F   K   + + R + S  + I L  NK DLA ++R V   + Q+ A
Sbjct: 81  AAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 138
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
                 F+E SAK   NVNE+F  I +++
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
           +F  + I+VD      +I DTAG E++ ++   Y +   G ++VY +  H T++++++ +
Sbjct: 65  EFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL 124
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
           KEL  R      + I+LV NK DL  H R VPT + +A A+  G  FIE SA + TNV  
Sbjct: 125 KEL--RDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 181
Query: 258 MFAEIVREM 266
            F  I+ E+
Sbjct: 182 AFQTILTEI 190

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L ++FV G F E  + TI   F  + + +D      EI DTAG E++ S+  +Y +  Q
Sbjct: 20  SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQ 79
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
             +VVY +TN  +F   K   + + R + S  + I L  NK DLA ++R V   + Q+ A
Sbjct: 80  AAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 137
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
                 F+E SAK   NVNE+F  I +++
Sbjct: 138 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L ++FV G F E  + TI   F  + + +D      EI DTAG E++ S+  +Y +  Q
Sbjct: 21  SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 80
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
             +VVY +TN  +F   K   + + R + S  + I L  NK DLA ++R V   + Q+ A
Sbjct: 81  AAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 138
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
                 F+E SAK   NVNE+F  I +++
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L ++FV G F E  + TI   F  + + +D      EI DTAG E++ S+  +Y +  Q
Sbjct: 21  SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 80
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
             +VVY +TN  +F   K   + + R + S  + I L  NK DLA ++R V   + Q+ A
Sbjct: 81  AAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 138
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
                 F+E SAK   NVNE+F  I +++
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
           +F  + I+VD      +I DTAG E++ ++   Y +   G ++VY +  H T++++++ +
Sbjct: 65  EFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL 124
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
           KEL  R      + I+LV NK DL  H R VPT + +A A+  G  FIE SA + TNV  
Sbjct: 125 KEL--RDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 181
Query: 258 MFAEIVREM 266
            F  I+ E+
Sbjct: 182 AFQTILTEI 190

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L ++FV G F E  + TI   F  + + +D      EI DTAG E++ S+  +Y +  Q
Sbjct: 21  SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 80
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
             +VVY +TN  +F   K   + + R + S  + I L  NK DLA ++R V   + Q+ A
Sbjct: 81  AAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 138
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
                 F+E SAK   NVNE+F  I +++
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L ++FV G F E  + TI   F  + + +D      EI DTAG E++ S+  +Y +  Q
Sbjct: 21  SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 80
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
             +VVY +TN  +F   K   + + R + S  + I L  NK DLA ++R V   + Q+ A
Sbjct: 81  AAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 138
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
                 F+E SAK   NVNE+F  I +++
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTA 160
           +R+F             +L  +F+   F   Y  TI  DF  K + ++     L++ DTA
Sbjct: 12  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 71
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
           G E+F S+   YI++    VVVY +TN ++F    +  + +   +GS+ V I+LV NK D
Sbjct: 72  GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD-VIIMLVGNKTD 130
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262
           L S +R+V T +G+  A+     FIE SAK   NV ++F  +
Sbjct: 131 L-SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 3/148 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L +QF    F   +D TI  +F  + I +D     L+I DTAG E F S+   Y +   G
Sbjct: 26  LLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 85
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            ++VY +T   TF  +    E   R   +  + I+L+ NK DL S +REV   +G+A A+
Sbjct: 86  ALLVYDITRRDTFNHLTTWLE-DARQHSNSNMVIMLIGNKSDLES-RREVKKEEGEAFAR 143
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
             G  F+E SAK  +NV E F    +E+
Sbjct: 144 EHGLIFMETSAKTASNVEEAFINTAKEI 171

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L  +F+   F   Y  TI  DF  K + ++     L++ DTAG E+F S+   YI++  
Sbjct: 17  SLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST 76
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
             VVVY +TN ++FQ   +  + +   +GS+ V I+LV NK DLA  +R++   +G+  A
Sbjct: 77  VAVVVYDITNLNSFQQTSKWIDDVRTERGSD-VIIMLVGNKTDLA-DKRQITIEEGEQRA 134
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEI 262
           +     FIE SAK   NV ++F  +
Sbjct: 135 KELSVMFIETSAKTGYNVKQLFRRV 159

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
           +F  + I+VD      +I DTAG E++ ++   Y +   G ++VY +  H T++++++ +
Sbjct: 41  EFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL 100
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
           KEL  R      + I LV NK DL  H R VPT + +A A+  G  FIE SA + TNV  
Sbjct: 101 KEL--RDHADSNIVIXLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 157
Query: 258 MFAEIVREM 266
            F  I+ E+
Sbjct: 158 AFQTILTEI 166

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTA 160
           +R+F             +L  +F+   F   Y  TI  DF  K + ++     L++ DTA
Sbjct: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
           G E+F S+   YI++    VVVY +TN ++FQ   +  + +   +GS+ V I+LV NK D
Sbjct: 71  GLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD-VIIMLVGNKTD 129
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263
           LA  +R+V   +G+  A+     FIE SAK   NV ++F  + 
Sbjct: 130 LA-DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
           +F  + I+VD      +I DTAG E++  +   Y +   G ++VY +  H T++++++ +
Sbjct: 41  EFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWL 100
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
           KEL  R      + I+LV NK DL  H R VPT + +A A+     FIE SA + TNV E
Sbjct: 101 KEL--RDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEE 157
Query: 258 MFAEIVREM 266
            F  I+ E+
Sbjct: 158 AFKNILTEI 166

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
           +F  + I+VD      +I DTAG E++ ++   Y +   G ++VY +  H T++++++ +
Sbjct: 47  EFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL 106
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
           KEL  R      + I LV NK DL  H R VPT + +A A+  G  FIE SA + TNV  
Sbjct: 107 KEL--RDHADSNIVIXLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 163
Query: 258 MFAEIVREM 266
            F  I+ E+
Sbjct: 164 AFQTILTEI 172

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L  +F+   F   Y  TI  DF  K + ++     L++ DTAG E+F S+   YI++  
Sbjct: 16  SLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST 75
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
             VVVY +TN ++FQ   +  + +   +GS+ V I+LV NK DLA  +R+V   +G+  A
Sbjct: 76  VAVVVYDITNVNSFQQTTKWIDDVRTERGSD-VIIMLVGNKTDLA-DKRQVSIEEGERKA 133
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEI 262
           +     FIE SAK   NV ++F  +
Sbjct: 134 KELNVMFIETSAKAGYNVKQLFRRV 158

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L ++FV G F E  + TI   F  + + +D      EI DTAG E++ S+   Y +  Q
Sbjct: 22  SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPXYYRGAQ 81
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
             +VVY +TN  +F   K   + + R + S  + I L  NK DLA ++R V   + Q+ A
Sbjct: 82  AAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 139
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
                 F E SAK   NVNE+F  I +++
Sbjct: 140 DDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTA 160
           +R+F             +L  +F+   F   Y  TI  DF  K + ++     L++ DTA
Sbjct: 4   LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 63
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
           G E+F S+   YI++    VVVY +TN ++FQ   +  + +   +GS+ V I+LV NK D
Sbjct: 64  GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSD-VIIMLVGNKTD 122
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262
           LA  +R+V   +G+  A+     FIE SAK   NV ++F  +
Sbjct: 123 LA-DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L +QF    F   +D TI  +F  + + +D     L+I DTAG E F S+   Y +   G
Sbjct: 37  LLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            ++VY +T   TF  +    E   R   S  + I+L+ NK DL S +R+V   +G+A A+
Sbjct: 97  ALLVYDITRRETFNHLTSWLE-DARQHSSSNMVIMLIGNKSDLES-RRDVKREEGEAFAR 154
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
             G  F+E SAK   NV E F    +E+
Sbjct: 155 EHGLIFMETSAKTACNVEEAFINTAKEI 182

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 87/184 (47%), Gaps = 20/184 (10%)
Query: 90  LLPRCSIDNSFTMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTI-EDFYRKEIEVD 148
           L+PR S      +RE              ++  +FV   F     PTI   F  K +   
Sbjct: 14  LVPRGS-----AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTV--- 65
Query: 149 KAPCVLE-----ILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELIT 202
             PC  E     I DTAG E+F S+  +Y +     V+VY +T   +F  +K+ +KEL  
Sbjct: 66  --PCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL-- 121
Query: 203 RVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262
           +  G E + + +  NK DL S  REVP  D +  A+S G   +E SAKN  N+ E+F  I
Sbjct: 122 KEHGPENIVMAIAGNKCDL-SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180
Query: 263 VREM 266
            R++
Sbjct: 181 SRQI 184

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTA 160
           +R+F             +L  +F+   F   Y  TI  DF  K + ++     L++ DTA
Sbjct: 14  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 73
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
           G E+F S+   YI++    VVVY +TN ++FQ   +  + +   +GS+ V I+LV NK D
Sbjct: 74  GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSD-VIIMLVGNKTD 132
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263
           LA  +R+V   +G+  A+     FIE SAK   NV ++F  + 
Sbjct: 133 LA-DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 174

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 6/147 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           +F +G F E+   TI  DF  K +E+      L+I DTAG E+F ++   Y ++  G ++
Sbjct: 48  RFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAIL 107
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
            Y +T   +F  +    E + +  GS  V  LL+ NK DL S  REV   + Q+LA+ + 
Sbjct: 108 AYDITKRSSFLSVPHWIEDVRKYAGSNIVQ-LLIGNKSDL-SELREVSLAEAQSLAEHYD 165
Query: 242 --CPFIEASAKNKTNVNEMFAEIVREM 266
             C  IE SAK+ +NV E F  +  E+
Sbjct: 166 ILCA-IETSAKDSSNVEEAFLRVATEL 191

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 138 EDFYRKEIEVDKAPCVLEILD---TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI 194
           ED Y + + VD     + +LD     G  ++  + D  ++ G  +++VYS+T+  +F+  
Sbjct: 42  EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKA 99
Query: 195 KQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTN 254
            +++  + R + +E +PI+LV NK DL    REV   +G+A A  + C FIE SA  + N
Sbjct: 100 SELRIQLRRARQTEDIPIILVGNKSDLV-RXREVSVSEGRAXAVVFDCKFIETSAAVQHN 158
Query: 255 VNEMFAEIVREMNFNPE 271
           V E+F  IVR++    +
Sbjct: 159 VKELFEGIVRQVRLRRD 175

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 138 EDFYRKEIEVDKAPCVLEILD---TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI 194
           ED Y + + VD     + +LD     G  ++  + D  ++ G  +++VYS+T+  +F+  
Sbjct: 73  EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA 130
Query: 195 KQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTN 254
            +++  + R + +E +PI+LV NK DL    REV   +G+A A  + C FIE SA  + N
Sbjct: 131 SELRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSEGRACAVVFDCKFIETSAAVQHN 189
Query: 255 VNEMFAEIVREMNFNPE 271
           V E+F  IVR++    +
Sbjct: 190 VKELFEGIVRQVRLRRD 206

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           ++  +F    F   Y  TI  DF  K + +D+ P  L++ DTAG E+F S+   YI++  
Sbjct: 16  SIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSA 75
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
             +VVY +TN  +F++  +  + I   +G + V I LV NK DL    R+V   +G   A
Sbjct: 76  AAIVVYDITNRQSFENTTKWIQDILNERGKD-VIIALVGNKTDLGD-LRKVTYEEGXQKA 133
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           Q +   F E SAK   N+  +F +   ++
Sbjct: 134 QEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAP-CVLEILDTAGTEQFASMRDLYIKNG 176
           +L  ++V+  + ++Y  TI  DF  KE+ VD      +++ DTAG E+F S+   + +  
Sbjct: 23  SLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGA 82
Query: 177 QGFVVVYSLTNHHTFQDIKQMKE---LITRVKGSERVPILLVANKLDLASHQREVPTLDG 233
              V+VY +TN  +F++IK  ++   +   V   E  P +++ NK+D    ++ V     
Sbjct: 83  DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSA 142
Query: 234 QALAQSWG-CPFIEASAKNKTNVNEMFAEIVR 264
           Q LA+S G  P    SAKN  NV+  F EI R
Sbjct: 143 QELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 75/134 (55%), Gaps = 6/134 (4%)
Query: 138 EDFYRKEIEVDKAPCVLEILD---TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI 194
           ED Y + + VD     + +LD     G  ++  + D  ++ G  +++VYS+T+  +F+  
Sbjct: 42  EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA 99
Query: 195 KQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTN 254
            +++  + R + +E +PI+LV NK DL    REV   +G+A A  + C FIE SA  + N
Sbjct: 100 SELRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSEGRACAVVFDCKFIETSAAVQHN 158
Query: 255 VNEMFAEIVREMNF 268
           V E+F  IVR++  
Sbjct: 159 VKELFEGIVRQVRL 172

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 5/146 (3%)
Query: 123 QFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           +FV   F    +PTI   F  K ++         I DTAG E+F ++  +Y +     ++
Sbjct: 25  RFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84
Query: 182 VYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW 240
           VY +T   TF  +K  ++EL  R  G   + + +  NK DL +  REV   D +  A S 
Sbjct: 85  VYDITKEETFSTLKNWVREL--RQHGPPSIVVAIAGNKCDL-TDVREVMERDAKDYADSI 141
Query: 241 GCPFIEASAKNKTNVNEMFAEIVREM 266
              F+E SAKN  N+NE+F EI R +
Sbjct: 142 HAIFVETSAKNAININELFIEISRRI 167

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 5/146 (3%)
Query: 123 QFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           +FV   F    +PTI   F  K ++         I DTAG E+F ++  +Y +     ++
Sbjct: 24  RFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAII 83
Query: 182 VYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW 240
           VY +T   TF  +K  ++EL  R  G   + + +  NK DL +  REV   D +  A S 
Sbjct: 84  VYDITKEETFSTLKNWVREL--RQHGPPSIVVAIAGNKCDL-TDVREVMERDAKDYADSI 140
Query: 241 GCPFIEASAKNKTNVNEMFAEIVREM 266
              F+E SAKN  N+NE+F EI R +
Sbjct: 141 HAIFVETSAKNAININELFIEISRRI 166

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 8/179 (4%)
Query: 90  LLPRCSIDNSFTMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD 148
           L+PR S D +F    F              L  +F    F      TI  +F  + + + 
Sbjct: 14  LVPRGSEDYNFV---FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG 70
Query: 149 KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGS 207
            A    +I DTAG E++ ++   Y +   G ++V+ LT H T+  +++ +KEL    + +
Sbjct: 71  TAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT 130
Query: 208 ERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             + ++LV NK DL S  REVPT + +  A++ G  F+E SA + TNV   F  +++E+
Sbjct: 131 --IVVMLVGNKSDL-SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 75/132 (56%), Gaps = 6/132 (4%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQM- 197
           +F  K++EVD     ++I DTAG E+F S+R  + +     ++ +S+ +  +FQ++    
Sbjct: 45  EFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWK 104
Query: 198 KELI--TRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTN 254
           KE I    VK  E  P +++ NK+D++  +R+V T + QA  +  G  P+ E SAK+ TN
Sbjct: 105 KEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATN 162
Query: 255 VNEMFAEIVREM 266
           V   F E VR +
Sbjct: 163 VAAAFEEAVRRV 174

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 75/132 (56%), Gaps = 6/132 (4%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQM- 197
           +F  K++EVD     ++I DTAG E+F S+R  + +     ++ +S+ +  +FQ++    
Sbjct: 43  EFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWK 102
Query: 198 KELI--TRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTN 254
           KE I    VK  E  P +++ NK+D++  +R+V T + QA  +  G  P+ E SAK+ TN
Sbjct: 103 KEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATN 160
Query: 255 VNEMFAEIVREM 266
           V   F E VR +
Sbjct: 161 VAAAFEEAVRRV 172

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L ++F    +   Y  TI  DF  K +E+D     L+I DTAG E+F ++   Y +   G
Sbjct: 37  LLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 96
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            ++VY +T+  +F  +K   + I R   S  V  LLV NK DL   +R V     +  A 
Sbjct: 97  IIIVYDVTDQESFNGVKMWLQEIDRYATST-VLKLLVGNKCDL-KDKRVVEYDVAKEFAD 154
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
           +   PF+E SA + TNV + F  + R++
Sbjct: 155 ANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L ++F    +   Y  TI  DF  K +E+D     L+I DTAG E+F ++   Y +   G
Sbjct: 24  LLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            ++VY +T+  +F  +K   + I R   S  V  LLV NK DL   +R V     +  A 
Sbjct: 84  IIIVYDVTDQESFNGVKMWLQEIDRYATS-TVLKLLVGNKCDL-KDKRVVEYDVAKEFAD 141
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
           +   PF+E SA + TNV + F  + R++
Sbjct: 142 ANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L ++F    +   Y  TI  DF  K +E+D     L+I DTAG E+F ++   Y +   G
Sbjct: 24  LLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            ++VY +T+  +F  +K   + I R   S  V  LLV NK DL   +R V     +  A 
Sbjct: 84  IIIVYDVTDQESFNGVKMWLQEIDRYATS-TVLKLLVGNKCDL-KDKRVVEYDVAKEFAD 141
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
           +   PF+E SA + TNV + F  + R++
Sbjct: 142 ANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           +F    F   +  TI  DF  + IE+D     L+I DTAG E+F ++   Y +   G ++
Sbjct: 27  RFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           VY +TN  +F +I+     I     S  V  +++ NK D+ + +R+V    G+ LA  +G
Sbjct: 87  VYDITNEKSFDNIRNWIRNIEE-HASADVEKMILGNKCDV-NDKRQVSKERGEKLALDYG 144
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNPEKD 273
             F+E SAK   NV   F  + R++    +K+
Sbjct: 145 IKFMETSAKANINVENAFFTLARDIKAKMDKN 176

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 138 EDFYRKEIEVDKAPCVLEILDTAGTEQFASM--RDLYIKNGQGFVVVYSLTNHHTFQDIK 195
           ED Y + + VD     L ++DT   E+      ++  ++ G  +V+VYS+ +  +F+   
Sbjct: 38  EDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESAS 97
Query: 196 QMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
           +++  + R   ++ VPI+LV NK DLA   REV   +G+A A  + C FIE SA  + NV
Sbjct: 98  ELRIQLRRTHQADHVPIILVGNKADLA-RCREVSVEEGRACAVVFDCKFIETSATLQHNV 156
Query: 256 NEMF 259
            E+F
Sbjct: 157 AELF 160

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQM- 197
           +F  K++EVD     ++I DTAG E+F S+R  + +     ++ +S+ +  +FQ++    
Sbjct: 47  EFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWK 106
Query: 198 KELI--TRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTN 254
           KE I    VK  E  P +++ NK D+   +R+V T + QA  +  G  P+ E SAK+ TN
Sbjct: 107 KEFIYYADVKEPESFPFVILGNKTDI--KERQVSTEEAQAWCKDNGDYPYFETSAKDSTN 164
Query: 255 VNEMFAEIVREM 266
           V   F E VR +
Sbjct: 165 VAAAFEEAVRRI 176

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 134 DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQD 193
           D  ++  YR E  V      L+I DTAG E++ ++   Y +   GF+++Y +TN  +F  
Sbjct: 59  DFKVKTVYRHEKRVK-----LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNA 113
Query: 194 IKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT 253
           ++     I +    +   ++LV NK D+   +R VPT  GQ LA+  G  F EASAK   
Sbjct: 114 VQDWATQI-KTYSWDNAQVILVGNKCDM-EEERVVPTEKGQLLAEQLGFDFFEASAKENI 171
Query: 254 NVNEMFAEIV 263
           +V + F  +V
Sbjct: 172 SVRQAFERLV 181

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           +F    F   +  TI  DF  + IE+D     L+I DTAG E+F ++   Y +   G ++
Sbjct: 25  RFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 84
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           VY +TN  +F +I+     I     S  V  +++ NK D+ + +R+V    G+ LA  +G
Sbjct: 85  VYDITNEKSFDNIRNWIRNIEE-HASADVEKMILGNKCDV-NDKRQVSKERGEKLALDYG 142
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNPEK 272
             F+E SAK   NV   F  + R++    +K
Sbjct: 143 IKFMETSAKANINVENAFFTLARDIKAKMDK 173

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 82/149 (55%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L +++    F +K+  T++  F  K++ +      L I DTAG E+F ++  +Y ++  
Sbjct: 21  SLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSN 80
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
           G ++VY +T+  +FQ +K   + + ++ G+E + + +V NK+DL   +R V   + ++ A
Sbjct: 81  GAILVYDITDEDSFQKVKNWVKELRKMLGNE-ICLCIVGNKIDLEK-ERHVSIQEAESYA 138
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           +S G      SAK    + E+F ++ + M
Sbjct: 139 ESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 82/149 (55%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L +++    F +K+  T++  F  K++ +      L I DTAG E+F ++  +Y ++  
Sbjct: 35  SLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSN 94
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
           G ++VY +T+  +FQ +K   + + ++ G+E + + +V NK+DL   +R V   + ++ A
Sbjct: 95  GAILVYDITDEDSFQKVKNWVKELRKMLGNE-ICLCIVGNKIDLEK-ERHVSIQEAESYA 152
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           +S G      SAK    + E+F ++ + M
Sbjct: 153 ESVGAKHYHTSAKQNKGIEELFLDLCKRM 181

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
           +F  + + +  A    +I DTAG E++ ++   Y +   G ++V+ LT H T+  +++ +
Sbjct: 46  EFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWL 105
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
           KEL    + +  + ++LV NK DL S  REVPT + +  A++ G  F+E SA + TNV  
Sbjct: 106 KELYDHAEAT--IVVMLVGNKSDL-SQAREVPTEEARMFAENNGLLFLETSALDSTNVEL 162
Query: 258 MFAEIVREM 266
            F  +++E+
Sbjct: 163 AFETVLKEI 171

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 6/137 (4%)
Query: 138 EDFYRKEIEVDKAPCVLEILD---TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI 194
           ED Y + + VD     + +LD     G  ++  + D  ++ G  +++VYS+T+  +F+  
Sbjct: 42  EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA 99
Query: 195 KQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTN 254
            +++  + R + +E +PI+LV NK DL    REV   +G+A A  +   FIE SA  + N
Sbjct: 100 SELRIQLRRARQTEDIPIILVGNKSDLV-RXREVSVSEGRAXAVVFDXKFIETSAAVQHN 158
Query: 255 VNEMFAEIVREMNFNPE 271
           V E+F  IVR++    +
Sbjct: 159 VKELFEGIVRQVRLRRD 175

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMK 198
           DF  K +        L+I DTAG E++ ++   Y +   GF+++Y + N  +F  ++   
Sbjct: 58  DFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWA 117
Query: 199 ELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM 258
             I +    +   ++LV NK DL   +R VP  DG+ LA   G  F EASAK   NV ++
Sbjct: 118 TQI-KTYSWDNAQVILVGNKCDL-EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQV 175
Query: 259 FAEIV 263
           F  +V
Sbjct: 176 FERLV 180

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 81/149 (54%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L +++    F +K+  T+   F  K++ +      L I DTAG E+F ++  +Y ++  
Sbjct: 21  SLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSN 80
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
           G ++VY +T+  +FQ +K   + + ++ G+E + + +V NK+DL   +R V   + ++ A
Sbjct: 81  GAILVYDITDEDSFQKVKNWVKELRKMLGNE-ICLCIVGNKIDLEK-ERHVSIQEAESYA 138
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           +S G      SAK    + E+F ++ + M
Sbjct: 139 ESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 2/125 (1%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMK 198
           DF  K I  +     L+I DTAG E++ ++   Y +   GF+++Y +TN  +F  ++   
Sbjct: 41  DFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS 100
Query: 199 ELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM 258
             I +    +   +LLV NK D+   +R V +  G+ LA   G  F EASAK+  NV + 
Sbjct: 101 TQI-KTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQT 158
Query: 259 FAEIV 263
           F  +V
Sbjct: 159 FERLV 163

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEI---------EVDKAPCV-LEILDTAGTEQFASMRDL 171
           Q+  G F  K+  T+  DF  K +          V +   + L++ DTAG E+F S+   
Sbjct: 30  QYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTA 89
Query: 172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL 231
           + ++  GF++++ LTN  +F +++     +     SE   I+L  NK DL   QR V   
Sbjct: 90  FFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDL-EDQRAVKEE 148
Query: 232 DGQALAQSWGCPFIEASAKNKTNVN---EMFAEIV 263
           + + LA+ +G P+ E SA N TN++   EM  +++
Sbjct: 149 EARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 15/157 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + S  F   Y PT+ D +   + V+ A   L + DTAG E +  +R L  +    F
Sbjct: 24  LLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83
Query: 180 VVVYSLTNHHTFQDI--KQMKELITRVKGSERVPILLVANKLDLA-------SHQREVP- 229
           ++ +SL +  +++++  K + EL     G   VPI+LV  KLDL         H   VP 
Sbjct: 84  ILAFSLISKASYENVSKKWIPELKHYAPG---VPIVLVGTKLDLRDDKQFFIDHPGAVPI 140
Query: 230 -TLDGQALAQSWGCP-FIEASAKNKTNVNEMFAEIVR 264
            T+ G+ L +  G P +IE S+K++ NV  +F   +R
Sbjct: 141 TTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 5/157 (3%)
Query: 119 ALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L ++F    F   Y  TI  DF  + +E++     L+I DTAG E+F ++   Y +   
Sbjct: 24  SLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH 83
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
           G +VVY +T+  +F ++K+    I   +  + V  +LV NK D    ++ V T D    A
Sbjct: 84  GVIVVYDVTSAESFVNVKRWLHEIN--QNCDDVCRILVGNKND-DPERKVVETEDAYKFA 140
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
              G    E SAK   NV EMF   + E+    +KDN
Sbjct: 141 GQMGIQLFETSAKENVNVEEMF-NCITELVLRAKKDN 176

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
           +F  +++EVD     L+I DTAG E+F S+R  + +     ++ +S+ +  +F+++    
Sbjct: 43  EFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQ 102
Query: 198 KELI--TRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTN 254
           KE I    VK  E  P +++ NK+D     R+V T + Q      G  P++E SAK+ TN
Sbjct: 103 KEFIYYADVKDPEHFPFVVLGNKVD--KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTN 160
Query: 255 VNEMFAEIVREM 266
           V   F E VR++
Sbjct: 161 VTVAFEEAVRQV 172

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 7/151 (4%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L  Q+V+  F  +Y  TI  DF  KE+ VD     ++I DTAG E+F S+   + +   
Sbjct: 23  SLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGAD 82
Query: 178 GFVVVYSLTNHHTFQDIKQMKE---LITRVKGSERVPILLVANKLDLASHQREVPTLDGQ 234
             V+V+ +T  +TF+ +   ++   +    +  E  P +++ NK+DL    R+V T   Q
Sbjct: 83  CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL--ENRQVATKRAQ 140
Query: 235 ALAQSW-GCPFIEASAKNKTNVNEMFAEIVR 264
           A   S    P+ E SAK   NV + F  I R
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 3/143 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQF-ASMRDLYIKNGQ 177
           LT +F +G F ++ + TI  DF  + +++D     +++ DTAG E+F  SM   Y +N  
Sbjct: 36  LTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
             V VY +TN  +F  +    E   +   +  +P +LV NK DL S   +VPT   Q  A
Sbjct: 96  AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDLAQKFA 154
Query: 238 QSWGCPFIEASAKNKTNVNEMFA 260
            +   P  E SAKN  + + + A
Sbjct: 155 DTHSMPLFETSAKNPNDNDHVEA 177

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 7/151 (4%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L  Q+V+  F  +Y  TI  DF  KE+ VD     ++I DTAG E+F S+   + +   
Sbjct: 23  SLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGAD 82
Query: 178 GFVVVYSLTNHHTFQDIKQMKE---LITRVKGSERVPILLVANKLDLASHQREVPTLDGQ 234
             V+V+ +T  +TF+ +   ++   +    +  E  P +++ NK+DL    R+V T   Q
Sbjct: 83  CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL--ENRQVATKRAQ 140
Query: 235 ALAQSW-GCPFIEASAKNKTNVNEMFAEIVR 264
           A   S    P+ E SAK   NV + F  I R
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 7/151 (4%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L  Q+V+  F  +Y  TI  DF  KE+ VD     ++I DTAG E+F S+   + +   
Sbjct: 23  SLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRGAD 82
Query: 178 GFVVVYSLTNHHTFQDIKQMKE---LITRVKGSERVPILLVANKLDLASHQREVPTLDGQ 234
             V+V+ +T  +TF+ +   ++   +    +  E  P +++ NK+DL    R+V T   Q
Sbjct: 83  CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL--ENRQVATKRAQ 140
Query: 235 ALAQSW-GCPFIEASAKNKTNVNEMFAEIVR 264
           A   S    P+ E SAK   NV + F  I R
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 3/143 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQF-ASMRDLYIKNGQ 177
           LT +F +G F ++ + TI  DF  + +++D     +++ DTAG E+F  SM   Y +N  
Sbjct: 45  LTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 104
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
             V VY  TN  +F  +    E   +   +  +P +LV NK DL S   +VPT   Q  A
Sbjct: 105 AVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDLAQKFA 163
Query: 238 QSWGCPFIEASAKNKTNVNEMFA 260
            +   P  E SAKN  + + + A
Sbjct: 164 DTHSXPLFETSAKNPNDNDHVEA 186

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L ++F    + E Y  TI  DF  + IE+D     L+I DTAG E+F ++   Y +   G
Sbjct: 14  LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 73
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
            +VVY +T+  +F ++KQ  + I R   SE V  LLV NK DL +
Sbjct: 74  IIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTT 117

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 2/139 (1%)
Query: 138 EDFYRKEIEVDKAPCVLEILDT-AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ 196
           ED Y + I VDK    L + D     +    +RD  ++ G  F++V+S+T+  +F  + +
Sbjct: 58  EDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE 117
Query: 197 MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVN 256
               +   +    +P++LV NK DLA   REV   +G+ LA +  C  IE SA    N  
Sbjct: 118 TLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTR 176
Query: 257 EMFAEIVREMNFNPEKDNA 275
           E+F   VR++     +++A
Sbjct: 177 ELFEGAVRQIRLRRGRNHA 195

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 7/151 (4%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L  Q+V+  F  +Y  TI  DF  KE+ VD     ++I DTAG E+F S+   + +   
Sbjct: 23  SLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGAD 82
Query: 178 GFVVVYSLTNHHTFQDIKQMKE---LITRVKGSERVPILLVANKLDLASHQREVPTLDGQ 234
             V+V+ +T  +TF+ +   ++   +    +  E  P +++ NK+D     R+V T   Q
Sbjct: 83  CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDF--ENRQVATKRAQ 140
Query: 235 ALAQSW-GCPFIEASAKNKTNVNEMFAEIVR 264
           A   S    P+ E SAK   NV + F  I R
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA 235
           G  +V+VYS+T+  +F+   +++  + R + ++ VPI+LV NK DL    REV   +G+A
Sbjct: 78  GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-RSREVSVDEGRA 136
Query: 236 LAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNA 275
            A  + C FIE SA    NV  +F  +VR++    +   A
Sbjct: 137 CAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEA 176

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMK 198
           DF  K I  +     L+I DTAG E++ ++   Y +   GF++ Y +TN  +F  ++   
Sbjct: 44  DFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWS 103
Query: 199 ELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM 258
             I +    +   +LLV NK D    +R V +  G+ LA   G  F EASAK+  NV + 
Sbjct: 104 TQI-KTYSWDNAQVLLVGNKCD-XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQT 161
Query: 259 FAEIV 263
           F  +V
Sbjct: 162 FERLV 166

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA 235
           G  +V+VYS+T+  +F+   +++  + R + ++ VPI+LV NK DL    REV   +G+A
Sbjct: 78  GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-RSREVSVDEGRA 136
Query: 236 LAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
            A  + C FIE SA    NV  +F  +VR++    +
Sbjct: 137 CAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRD 172

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 4/138 (2%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           ++  G F + Y  TI  DF  ++I+V+     L + DTAG E+F ++   Y +  Q  V+
Sbjct: 24  RYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           V+S T+  +F+ I   +E +    G   +P  LV NK+DL      +   + + LA+   
Sbjct: 84  VFSTTDRESFEAISSWREKVVAEVGD--IPTALVQNKIDLLDDSC-IKNEEAEGLAKRLK 140
Query: 242 CPFIEASAKNKTNVNEMF 259
             F   S K   NV+E+F
Sbjct: 141 LRFYRTSVKEDLNVSEVF 158

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA 235
           G  +V+VYS+T+  +F+   +++  + R + ++ VPI+LV NK DL    REV   +G+A
Sbjct: 73  GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-RSREVSVDEGRA 131
Query: 236 LAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFN 269
            A  + C FIE SA    NV  +F  +VR++   
Sbjct: 132 CAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           L  +F  G F      TI  DF  K +E++     L+I DTAG E+F S+   Y ++   
Sbjct: 42  LVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
            ++ Y +T   +F+ + +    I +   S +V  +LV NK+DLA  +REV     +  ++
Sbjct: 102 LILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLA-ERREVSQQRAEEFSE 159
Query: 239 SWGCPFIEASAKNKTNVNEMFAEI 262
           +    ++E SAK   NV ++F ++
Sbjct: 160 AQDMYYLETSAKESDNVEKLFLDL 183

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 15/157 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           + + + S  F   Y PT+ D +   + VD     L + DTAG E +  +R L  +    F
Sbjct: 22  MLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81
Query: 180 VVVYSLTNHHTFQDI--KQMKELITRVKGSERVPILLVANKLDLA-------SHQREVP- 229
           ++ +SL +  +++++  K + EL     G   VPI+LV  KLDL         H   VP 
Sbjct: 82  ILAFSLISKASYENVAKKWIPELRHYAPG---VPIILVGTKLDLRDDKQFFIDHPGAVPI 138
Query: 230 -TLDGQALAQSWGCP-FIEASAKNKTNVNEMFAEIVR 264
            T  G+ L +  G P +IE S+K + NV  +F   ++
Sbjct: 139 TTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIK 175

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
Query: 119 ALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
           +L ++F    F  +   TI  DF  K I VD     L I DTAG E+F ++   Y +  Q
Sbjct: 30  SLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ 89
Query: 178 GFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236
           G ++VY +T   TF  +   + EL T    ++ V   LV NK+D     REV   +G   
Sbjct: 90  GVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN-XLVGNKID--KENREVDRNEGLKF 146
Query: 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNP 270
           A+     FIEASAK    V   F E+V ++   P
Sbjct: 147 ARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTP 180

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 124 FVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183
           + S  F   Y PT+ D +   + VD     L + DTAG E ++ +R L  +    FV+ +
Sbjct: 29  YTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 88
Query: 184 SLTNHHTFQDI--KQMKELITRVKGSERVPILLVANKLD-------LASHQREVPTLDGQ 234
           SL +  +++++  K M EL    + +  VPI+LV  KLD       LA H   + +  G+
Sbjct: 89  SLISKASYENVLKKWMPEL---RRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGE 145
Query: 235 ALAQSWG-CPFIEASAKNKTNVNEMFAEIVREMNFNPEK 272
            L +  G   +IE S+K + NV  +F   ++ +   P +
Sbjct: 146 ELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 184

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
           +F  + +E++      +I DTAG E++ ++   Y +   G ++VY ++   ++++    +
Sbjct: 49  EFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWL 108
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
            EL  R    + V + L+ NK DLA H R VPT + +  AQ     F E SA N  NV++
Sbjct: 109 SEL--RENADDNVAVGLIGNKSDLA-HLRAVPTEESKTFAQENQLLFTETSALNSENVDK 165
Query: 258 MFAEIV 263
            F E++
Sbjct: 166 AFEELI 171

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           QF    FM     TI  +F  + IEV      L+I DTAG E+F ++   Y +   G ++
Sbjct: 34  QFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           VY +T   T+  +         +     V I+L+ NK DL + QR+V   + +  A+  G
Sbjct: 94  VYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEA-QRDVTYEEAKQFAEENG 151
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFN 269
             F+EASAK   NV + F E  +++  N
Sbjct: 152 LLFLEASAKTGENVEDAFLEAAKKIYQN 179

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 138 EDFYRKEIEVDKAPCVLEILDT-AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ 196
           ED Y + I VDK    L + D     +    ++D  ++ G  F++V+S+T+  +F  + +
Sbjct: 37  EDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE 96
Query: 197 MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVN 256
               +   +    +P++LV NK DLA   REV   +G+ LA +  C  IE SA    N  
Sbjct: 97  TLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTR 155
Query: 257 EMFAEIVREMNFN 269
           E+F   VR++   
Sbjct: 156 ELFEGAVRQIRLR 168

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 138 EDFYRKEIEVDKAPCVLEILDT-AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ 196
           ED Y + I VDK    L + D     +    ++D  ++ G  F++V+S+T+  +F  + +
Sbjct: 47  EDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE 106
Query: 197 MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVN 256
               +   +    +P++LV NK DLA   REV   +G+ LA +  C  IE SA    N  
Sbjct: 107 TLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTR 165
Query: 257 EMFAEIVREMNFN 269
           E+F   VR++   
Sbjct: 166 ELFEGAVRQIRLR 178

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
           +F  + IEV+      +I DTAG E++ ++   Y +   G ++VY ++   ++++    +
Sbjct: 46  EFATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWL 105
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
            EL  R    + V + L+ NK DLA H R VPT + +  A      F E SA N  NV++
Sbjct: 106 TEL--RENADDNVAVGLIGNKSDLA-HLRAVPTDEAKNFAMENQMLFTETSALNSDNVDK 162
Query: 258 MFAEIV 263
            F E++
Sbjct: 163 AFRELI 168

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           QF+   F +  + TI  +F  K I V      L+I DTAG E+F S+   Y +   G ++
Sbjct: 29  QFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           VY +T+  T+  +        R+  S+ + I+L  NK DL +  REV  L+    AQ   
Sbjct: 89  VYDITSRETYNALTNWL-TDARMLASQNIVIILCGNKKDLDA-DREVTFLEASRFAQENE 146
Query: 242 CPFIEASAKNKTNVNEMFAEIVREM 266
             F+E SA    NV E F +  R++
Sbjct: 147 LMFLETSALTGENVEEAFVQCARKI 171

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL 213
           L++ DTAG E+F S+   + ++  GF++++ LT+  +F +++     +      E   I+
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 214 LVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
           L+ NK DL   QREV     + LA+ +G P+ E SA    NV +
Sbjct: 132 LIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEK 174

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 15/157 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F E+Y PT+ D Y   + V     +L + DTAG E +  +R L       F
Sbjct: 34  LLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLASHQREVPTLD------ 232
           ++ +S+ N  +FQ++K+  E +  +K  +  VP LL+  ++DL    + +  L+      
Sbjct: 94  LICFSVVNPASFQNVKE--EWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKP 151
Query: 233 -----GQALAQSWG-CPFIEASAKNKTNVNEMFAEIV 263
                GQ LA+  G C ++E SA  +  +  +F E +
Sbjct: 152 ICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 188

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL 213
           L++ DTAG E+F S+   + ++  GF++++ LT+  +F +++     +      E   I+
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 214 LVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
           L+ NK DL   QREV     + LA+ +G P+ E SA    NV
Sbjct: 132 LIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNV 172

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL 213
           L++ DTAG E+F S+   + ++  GF++ + LT+  +F +++     +      E   I+
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 214 LVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
           L+ NK DL   QREV     + LA+ +G P+ E SA    NV
Sbjct: 132 LIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNV 172

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 6/176 (3%)
Query: 90  LLPRCSIDNSFTMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD 148
           L+PR SI + F    F              L  QF+   F +  + TI  +F  + + V 
Sbjct: 14  LVPRGSIWSDFL---FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVG 70
Query: 149 KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSE 208
                L+I DTAG E+F S+   Y +   G ++VY +T+  T+  +        R   S 
Sbjct: 71  GKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWL-TDARTLASP 129
Query: 209 RVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264
            + ++L  NK DL   +REV  L+    AQ     F+E SA    NV E F +  R
Sbjct: 130 NIVVILCGNKKDL-DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR 184

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 19/160 (11%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + F    F E Y PT+ + Y  +IEVD     L + DTAG E +  +R L   +    
Sbjct: 41  LLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
           ++ +S+ +  + ++I +  + +  VK     VPI+LVANK DL S            Q  
Sbjct: 101 LMCFSVDSPDSLENIPE--KWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEP 158
Query: 228 VPTLDGQALA---QSWGCPFIEASAKNKTNVNEMFAEIVR 264
           V T DG+A+A   Q++   ++E SAK K  V E+F    R
Sbjct: 159 VRTDDGRAMAVRIQAYD--YLECSAKTKEGVREVFETATR 196

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL 213
           L++ DTAG E+F S+   + ++  GF++ + LT+  +F +++     +      E   I+
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 214 LVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
           L+ NK DL   QREV     + LA+ +G P+ E SA    NV
Sbjct: 132 LIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNV 172

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL 213
           L++ DTAG E+F S+   + ++  GF++++ LT+  +F +++     +      E   I+
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 214 LVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
           L+ NK DL   QREV     + LA  +G P+ E SA    NV
Sbjct: 146 LIGNKADLPD-QREVNERQARELADKYGIPYFETSAATGQNV 186

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL 213
            +I DTAG E++AS+  LY +     +VV+ ++N +T   + + K  + ++K S    I+
Sbjct: 95  FDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNT---LDRAKTWVNQLKISSNYIII 151
Query: 214 LVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           LVANK+D   ++ +V  L+ Q  AQ     FI+ SAK  TN+  +F  +  E+
Sbjct: 152 LVANKID--KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           QF+   F +  + TI  +F  K I V      L+I DTAG E+F S+   Y +   G ++
Sbjct: 30  QFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL 89
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           VY +T+  T+  +        R+  S+ + I+L  NK DL +  REV  L+    AQ   
Sbjct: 90  VYDITSRETYNALTNWL-TDARMLASQNIVIILCGNKKDLDA-DREVTFLEASRFAQENE 147
Query: 242 CPFIEASAKNKTNVNEMFAEIVREM 266
             F+E SA    +V E F +  R++
Sbjct: 148 LMFLETSALTGEDVEEAFVQCARKI 172

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           QF+   F +  + TI  +F  K I V      L+I DTAG E+F S+   Y +   G ++
Sbjct: 27  QFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALL 86
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           VY +T+  T+  +        R+  S+ + I+L  NK DL +  REV  L+    AQ   
Sbjct: 87  VYDITSRETYNALTNWLT-DARMLASQNIVIILCGNKKDLDA-DREVTFLEASRFAQENE 144
Query: 242 CPFIEASAKNKTNVNEMFAEIVREM 266
             F+E SA    +V E F +  R++
Sbjct: 145 LMFLETSALTGEDVEEAFVQCARKI 169

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 5/130 (3%)
Query: 139 DFYRKEIEVDKAPCV-LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI-KQ 196
           +F  K I++     +  +I DTAG E++ ++   Y +   G ++VY +T  ++F++I K 
Sbjct: 43  EFATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKW 102
Query: 197 MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVN 256
           +KEL  R      + ILLV NK DL  H R +   D    A+     FIE SA   TNV 
Sbjct: 103 LKEL--RDNADSNIVILLVGNKSDL-KHLRVINDNDATQYAKKEKLAFIETSALEATNVE 159
Query: 257 EMFAEIVREM 266
             F +++ E+
Sbjct: 160 LAFHQLLNEI 169

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 3/148 (2%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           QF    FM     TI  +F  + IEV      L+I DTAG  +F ++   Y +   G ++
Sbjct: 49  QFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALM 108
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           VY +T   T+  +         +     V I+L+ NK DL + QR+V   + +  A+  G
Sbjct: 109 VYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEA-QRDVTYEEAKQFAEENG 166
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFN 269
             F+EASAK   NV + F E  +++  N
Sbjct: 167 LLFLEASAKTGENVEDAFLEAAKKIYQN 194

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 15/157 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           + + +    F   Y PT+ D +   + VD +   L + DTAG E +  +R L  +    F
Sbjct: 22  MLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81
Query: 180 VVVYSLTNHHTFQDI--KQMKELITRVKGSERVPILLVANKLDLASHQR---------EV 228
           ++ +SL +  ++++I  K + EL     G   +PI+LV  KLDL   ++          +
Sbjct: 82  LLAFSLISKASYENIHKKWLPELKHYAPG---IPIVLVGTKLDLRDDKQFLKDHPGAASI 138
Query: 229 PTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
            T  G+ L +  G   ++E S+K + NV  +F   +R
Sbjct: 139 TTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIR 175

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PILLV  KLDL   +  +  L        
Sbjct: 79  LICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPI 137
Query: 232 ---DGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVREM 266
               G A+A+  G   ++E SA  +  +  +F E +R +
Sbjct: 138 TYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 20  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 79
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PILLV  KLDL   +  +  L        
Sbjct: 80  LICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPI 138
Query: 232 ---DGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVREM 266
               G A+A+  G   ++E SA  +  +  +F E +R +
Sbjct: 139 TYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 20  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 79
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PILLV  KLDL   +  +  L        
Sbjct: 80  LICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPI 138
Query: 232 ---DGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVREM 266
               G A+A+  G   ++E SA  +  +  +F E +R +
Sbjct: 139 TYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 17/157 (10%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           +L + F  G F E Y PT+ + Y   ++V   P  L I DTAG + +  +R L+  +   
Sbjct: 49  SLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASV 108
Query: 179 FVVVYSLTNHHTFQDI--KQMKELITRVKGSERVPILLVANKLDLASHQREVPTL----- 231
            ++ + +T+ ++F +I  +   E+    K   +VPI++V  K DL   +  V  L     
Sbjct: 109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLRKDKSLVNKLRRNGL 165
Query: 232 ------DGQALAQSWGC-PFIEASAKNKTNVNEMFAE 261
                  GQ +A+S G   ++E SA+   NV+ +F E
Sbjct: 166 EPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 26  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 85
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 86  LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 144
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
               G A+A+  G   ++E SA  +  +  +F E +R +
Sbjct: 145 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 183

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 29  LLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 88
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 89  LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 147
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
               G A+A+  G   ++E SA  +  +  +F E +R +
Sbjct: 148 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 186

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 79  LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
               G A+A+  G   ++E SA  +  +  +F E +R +
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 79  LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNP 270
               G A+A+  G   ++E SA  +  +  +F E +R +   P
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 79  LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNP 270
               G A+A+  G   ++E SA  +  +  +F E +R +   P
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 79  LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNP 270
               G A+A+  G   ++E SA  +  +  +F E +R +   P
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 38  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 97
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 98  LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 156
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
               G A+A+  G   ++E SA  +  +  +F E +R +
Sbjct: 157 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 195

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 79  LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
               G A+A+  G   ++E SA  +  +  +F E +R +
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 22  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 81
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 82  LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 140
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
               G A+A+  G   ++E SA  +  +  +F E +R +
Sbjct: 141 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 179

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 79  LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
               G A+A+  G   ++E SA  +  +  +F E +R +
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 46  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 106 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 164
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
               G A+A+  G   ++E SA  +  +  +F E +R +
Sbjct: 165 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 46  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 106 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 164
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
               G A+A+  G   ++E SA  +  +  +F E +R +
Sbjct: 165 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 79  LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
               G A+A+  G   ++E SA  +  +  +F E +R +
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 79  LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNP 270
               G A+A+  G   ++E SA  +  +  +F E +R +   P
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 75/149 (50%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           + ++G F +KY PT+  + +      ++ P    + DTAG E+F  +RD Y    Q  ++
Sbjct: 29  RHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           ++ +T+  T++++      + RV   E +PI+L  NK+D+   + +  ++      +   
Sbjct: 89  MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 143
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
             + + SAK+  N  + F  + R++  +P
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 16/155 (10%)
Query: 123 QFVSGCFMEKYDPTIE------DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNG 176
           + ++G F +KY  TI        FY    E+       ++ DTAG E+F  +RD Y  N 
Sbjct: 24  RHLTGEFEKKYIATIGVEVHPLSFYTNFGEIK-----FDVWDTAGLEKFGGLRDGYYINA 78
Query: 177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236
           Q  ++++ +T+  T++++      + RV   E +PI+L  NK+D+   + +  T+     
Sbjct: 79  QCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKERKVKAKTI---TF 133
Query: 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
            +     + + SAK+  N  + F  + R++  NP+
Sbjct: 134 HRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 168

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 16/155 (10%)
Query: 123 QFVSGCFMEKYDPTIE------DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNG 176
           + ++G F +KY  TI        FY    E+       ++ DTAG E+F  +RD Y  N 
Sbjct: 23  RHLTGEFEKKYIATIGVEVHPLSFYTNFGEIK-----FDVWDTAGLEKFGGLRDGYYINA 77
Query: 177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236
           Q  ++++ +T+  T++++      + RV   E +PI+L  NK+D+   + +  T+     
Sbjct: 78  QCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKERKVKAKTI---TF 132
Query: 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
            +     + + SAK+  N  + F  + R++  NP+
Sbjct: 133 HRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 167

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 75/149 (50%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           + ++G F +KY PT+  + +      ++ P    + DTAG E+F  +RD Y    Q  ++
Sbjct: 29  RHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           ++ +T+  T++++      + RV   E +PI+L  NK+D+   + +  ++      +   
Sbjct: 89  MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 143
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
             + + SAK+  N  + F  + R++  +P
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 16/155 (10%)
Query: 123 QFVSGCFMEKYDPTIE------DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNG 176
           + ++G F +KY  TI        FY    E+       ++ DTAG E+F  +RD Y  N 
Sbjct: 31  RHLTGEFEKKYIATIGVEVHPLSFYTNFGEIK-----FDVWDTAGLEKFGGLRDGYYINA 85
Query: 177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236
           Q  ++++ +T+  T++++      + RV   E +PI+L  NK+D+   + +  T+     
Sbjct: 86  QCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKERKVKAKTI---TF 140
Query: 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
            +     + + SAK+  N  + F  + R++  NP+
Sbjct: 141 HRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 175

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +     +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 46  LLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 106 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 164
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
               G A+A+  G   ++E SA  +  +  +F E +R +
Sbjct: 165 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 16/165 (9%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           +L V + +  +  +Y PT  D +   + VD  P  L++ DTAG ++F  +R L   N   
Sbjct: 35  SLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLDL-----------ASHQR 226
           F++ +S+ +  +FQ++ +  + +  ++    + PI+LV  + DL              ++
Sbjct: 95  FLLCFSVVSPSSFQNVSE--KWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEK 152
Query: 227 EVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMF-AEIVREMNFN 269
            VP    + LA+      +IE SA  + N+ E+F A IV  + ++
Sbjct: 153 PVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYS 197

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 171 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 230
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F  ++       R       PI+LV  KLDL   +  +  L        
Sbjct: 231 LICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 289
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
               G A+A+  G   ++E SA  +  +  +F E +R
Sbjct: 290 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 171 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 230
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F  ++       R       PI+LV  KLDL   +  +  L        
Sbjct: 231 LICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 289
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
               G A+A+  G   ++E SA  +  +  +F E +R
Sbjct: 290 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 171 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 230
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F  ++       R       PI+LV  KLDL   +  +  L        
Sbjct: 231 LICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 289
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
               G A+A+  G   ++E SA  +  +  +F E +R
Sbjct: 290 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 26  LLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 85
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  ++++++  K            PI+LV  KLDL   +  +  L        
Sbjct: 86  LICFSLVSPASYENVR-AKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPI 144
Query: 232 ---DGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREM 266
               G ALA+      ++E SA  +  +  +F E +R +
Sbjct: 145 TYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 183

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 25  LLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 84
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  ++++++  K            PI+LV  KLDL   +  +  L        
Sbjct: 85  LICFSLVSPASYENVR-AKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPI 143
Query: 232 ---DGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREM 266
               G ALA+      ++E SA  +  +  +F E +R +
Sbjct: 144 TYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 182

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  ++++++  K            PI+LV  KLDL   +  +  L        
Sbjct: 79  LICFSLVSPASYENVR-AKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPI 137
Query: 232 ---DGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREM 266
               G ALA+      ++E SA  +  +  +F E +R +
Sbjct: 138 TYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L        
Sbjct: 19  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 79  LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNP 270
               G A+A+  G   ++E SA  +  +  +F E +R +   P
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L        
Sbjct: 21  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 81  LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 139
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNP 270
               G A+A+  G   ++E SA  +  +  +F E +R +   P
Sbjct: 140 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L        
Sbjct: 23  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 82
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 83  LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 141
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNP 270
               G A+A+  G   ++E SA  +  +  +F E +R +   P
Sbjct: 142 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 184

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L        
Sbjct: 19  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
           ++ +SL +  +F++++       R       PI+LV  KLDL   +  +  L        
Sbjct: 79  LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNP 270
               G A+A+  G   ++E SA  +  +  +F E +R +   P
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           + ++G F +KY  T+  + +      ++ P    + DTAG E+F  +RD Y    Q  ++
Sbjct: 29  RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           ++ +T+  T++++      + RV   E +PI+L  NK+D+   + +  ++      +   
Sbjct: 89  MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 143
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
             + + SAK+  N  + F  + R++  +P
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           + ++G F +KY  T+  + +      ++ P    + DTAG E+F  +RD Y    Q  ++
Sbjct: 25  RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAII 84
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           ++ +T+  T++++      + RV   E +PI+L  NK+D+   + +  ++      +   
Sbjct: 85  MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 139
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
             + + SAK+  N  + F  + R++  +P
Sbjct: 140 LQYYDISAKSNYNFEKPFLWLARKLIGDP 168

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           + ++G F +KY  T+  + +      ++ P    + DTAG E+F  +RD Y    Q  ++
Sbjct: 31  RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAII 90
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           ++ +T+  T++++      + RV   E +PI+L  NK+D+   + +  ++      +   
Sbjct: 91  MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 145
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
             + + SAK+  N  + F  + R++  +P
Sbjct: 146 LQYYDISAKSNYNFEKPFLWLARKLIGDP 174

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 17/152 (11%)
Query: 127 GCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLT 186
           G F E Y PT+ + Y  ++EVD     L + DTAG E +  +R L   +    ++ +S+ 
Sbjct: 33  GQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSID 92
Query: 187 NHHTFQDIKQ--MKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDG 233
              + +++++  + E++   +G   VPI+LV  K+DL +            Q+ V + +G
Sbjct: 93  LPDSLENVQEKWIAEVLHFCQG---VPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEG 149
Query: 234 QALAQSWGCP-FIEASAKNKTNVNEMFAEIVR 264
           Q++A   G   + E SAK    V E+F    R
Sbjct: 150 QSVADQIGATGYYECSAKTGYGVREVFEAATR 181

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + F    F E Y PT+ + Y  +IEVD     L + DTAG E +  +R L   +    
Sbjct: 25  LLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 84
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
           ++ +S+ +  + ++I +  +    VK     VPI+LV NK DL +            Q  
Sbjct: 85  LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 142
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
           V   +G+ +A   G   ++E SAK K  V E+F    R
Sbjct: 143 VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 180

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + F    F E Y PT+ + Y  +IEVD     L + DTAG E +  +R L   +    
Sbjct: 23  LLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 82
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
           ++ +S+ +  + ++I +  +    VK     VPI+LV NK DL +            Q  
Sbjct: 83  LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 140
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
           V   +G+ +A   G   ++E SAK K  V E+F    R
Sbjct: 141 VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + F    F E Y PT+ + Y  +IEVD     L + DTAG E +  +R L   +    
Sbjct: 22  LLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 81
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
           ++ +S+ +  + ++I +  +    VK     VPI+LV NK DL +            Q  
Sbjct: 82  LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 139
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
           V   +G+ +A   G   ++E SAK K  V E+F    R
Sbjct: 140 VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + F    F E Y PT+ + Y  +IEVD     L + DTAG E +  +R L   +    
Sbjct: 22  LLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 81
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
           ++ +S+ +  + ++I +  +    VK     VPI+LV NK DL +            Q  
Sbjct: 82  LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 139
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
           V   +G+ +A   G   ++E SAK K  V E+F    R
Sbjct: 140 VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + F    F E Y PT+ + Y  +IEVD     L + DTAG E +  +R L   +    
Sbjct: 21  LLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 80
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
           ++ +S+ +  + ++I +  +    VK     VPI+LV NK DL +            Q  
Sbjct: 81  LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 138
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
           V   +G+ +A   G   ++E SAK K  V E+F    R
Sbjct: 139 VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + F    F E Y PT+ + Y  +IEVD     L + DTAG E +  +R L   +    
Sbjct: 24  LLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 83
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
           ++ +S+ +  + ++I +  +    VK     VPI+LV NK DL +            Q  
Sbjct: 84  LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 141
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
           V   +G+ +A   G   ++E SAK K  V E+F    R
Sbjct: 142 VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + F    F E Y PT+ + Y  +IEVD     L + DTAG E +  +R L   +    
Sbjct: 23  LLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 82
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
           ++ +S+ +  + ++I +  +    VK     VPI+LV NK DL +            Q  
Sbjct: 83  LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 140
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
           V   +G+ +A   G   ++E SAK K  V E+F    R
Sbjct: 141 VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 5/169 (2%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEV-DKAPCVLEILDT 159
           MR+              +LT  F    F ++Y  TI  DF+ + I +       L+I D 
Sbjct: 4   MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDI 63
Query: 160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRV-KGSERVPIL-LVAN 217
            G      M D YI   QG ++VY +TN+ +F++++    ++ +V + SE  P++ LV N
Sbjct: 64  GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGN 123
Query: 218 KLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           K+DL  H R +         Q  G      SAK   +V   F ++  E+
Sbjct: 124 KIDL-EHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + F    F E Y PT+ + Y  +IEVD     L + DTAG E +  +R L   +    
Sbjct: 23  LLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 82
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
           ++ +S+ +  + ++I +  +    VK     VPI+LV NK DL +            Q  
Sbjct: 83  LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 140
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
           V   +G+ +A   G   ++E SAK K  V E+F    R
Sbjct: 141 VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           + ++G F +KY  T+  + +      ++ P    + DTAG E+F  +RD Y    Q  ++
Sbjct: 22  RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 81
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           ++ +T+  T++++      + RV   E +PI+L  NK+D+   + +  ++      +   
Sbjct: 82  MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 136
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
             + + SAK+  N  + F  + R++  +P
Sbjct: 137 LQYYDISAKSNYNFEKPFLWLARKLIGDP 165

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           + ++G F +KY  T+  + +      ++ P    + DTAG E+F  +RD Y    Q  ++
Sbjct: 29  RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           ++ +T+  T++++      + RV   E +PI+L  NK+D+   + +  ++      +   
Sbjct: 89  MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 143
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
             + + SAK+  N  + F  + R++  +P
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           + ++G F +KY  T+  + +      ++ P    + DTAG E+F  +RD Y    Q  ++
Sbjct: 29  RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           ++ +T+  T++++      + RV   E +PI+L  NK+D+   + +  ++      +   
Sbjct: 89  MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 143
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
             + + SAK+  N  + F  + R++  +P
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           + ++G F +KY  T+  + +      ++ P    + DTAG E+F  +RD Y    Q  ++
Sbjct: 34  RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 93
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           ++ +T+  T++++      + RV   E +PI+L  NK+D+   + +  ++      +   
Sbjct: 94  MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 148
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
             + + SAK+  N  + F  + R++  +P
Sbjct: 149 LQYYDISAKSNYNFEKPFLWLARKLIGDP 177

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           + ++G F +KY  T+  + +      ++ P    + DTAG E+F  +RD Y    Q  ++
Sbjct: 29  RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAII 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           ++ +T+  T++++      + RV   E +PI+L  NK+D+   + +  ++      +   
Sbjct: 89  MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 143
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
             + + SAK+  N  + F  + R++  +P
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 129 FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH 188
           F E Y PT+ + Y  +IEVD     L + DTAG E +  +R L   +    ++ +S+ + 
Sbjct: 28  FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 87
Query: 189 HTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQREVPTLDGQAL 236
            + ++I +  +    VK     VPI+LV NK DL +            Q  V   +G+ +
Sbjct: 88  DSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 145
Query: 237 AQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
           A   G   ++E SAK K  V E+F    R
Sbjct: 146 ANRIGAFGYMECSAKTKDGVREVFEMATR 174

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 129 FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH 188
           F E Y PT+ + Y  +IEVD     L + DTAG E +  +R L   +    ++ +S+ + 
Sbjct: 33  FPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSP 92
Query: 189 HTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQREVPTLDGQAL 236
            + ++I +  +    VK     VPI+LV NK DL +            Q  V   +G+ +
Sbjct: 93  DSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 150
Query: 237 AQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
           A   G   ++E SAK K  V E+F    R
Sbjct: 151 ANRIGAFGYMECSAKTKDGVREVFEMATR 179

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 129 FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH 188
           F E Y PT+ + Y  +IEVD     L + DTAG E +  +R L   +    ++ +S+ + 
Sbjct: 30  FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 89
Query: 189 HTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQREVPTLDGQAL 236
            + ++I +  +    VK     VPI+LV NK DL +            Q  V   +G+ +
Sbjct: 90  DSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 147
Query: 237 AQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
           A   G   ++E SAK K  V E+F    R
Sbjct: 148 ANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 129 FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH 188
           F E Y PT+ + Y  +IEVD     L + DTAG E +  +R L   +    ++ +S+ + 
Sbjct: 28  FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 87
Query: 189 HTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQREVPTLDGQAL 236
            + ++I +  +    VK     VPI+LV NK DL +            Q  V   +G+ +
Sbjct: 88  DSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 145
Query: 237 AQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
           A   G   ++E SAK K  V E+F    R
Sbjct: 146 ANRIGAFGYMECSAKTKDGVREVFEMATR 174

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 129 FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH 188
           F E Y PT+ + Y  +IEVD     L + DTAG E +  +R L   +    ++ +S+ + 
Sbjct: 30  FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 89
Query: 189 HTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQREVPTLDGQAL 236
            + ++I +  +    VK     VPI+LV NK DL +            Q  V   +G+ +
Sbjct: 90  DSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 147
Query: 237 AQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
           A   G   ++E SAK K  V E+F    R
Sbjct: 148 ANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 129 FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH 188
           F E Y PT+ + Y  +IEVD     L + DTAG E +  +R L   +    ++ +S+ + 
Sbjct: 30  FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 89
Query: 189 HTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQREVPTLDGQAL 236
            + ++I +  +    VK     VPI+LV NK DL +            Q  V   +G+ +
Sbjct: 90  DSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 147
Query: 237 AQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
           A   G   ++E SAK K  V E+F    R
Sbjct: 148 ANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           + ++G F +KY  T+  + +      ++ P    + DTAG E+F  +RD Y    Q  ++
Sbjct: 29  RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
            + +T+  T++++      + RV   E +PI+L  NK+D+   + +  ++      +   
Sbjct: 89  XFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 143
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
             + + SAK+  N  + F  + R++  +P
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           + ++G F +KY  T+  + +      ++ P    + DTAG E++  +RD Y    Q  ++
Sbjct: 29  RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAII 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           ++ +T+  T++++      + RV   E +PI+L  NK+D+   + +  ++      +   
Sbjct: 89  MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 143
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
             + + SAK+  N  + F  + R++  +P
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + F    F E Y PT+ + Y  +IEVD     L + DTAG E +  +R L   +    
Sbjct: 41  LLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
           ++ +S+ +  + ++I +  +    VK     VPI+LV NK DL              Q  
Sbjct: 101 LMCFSIDSPDSLENIPE--KWTPEVKHFXPNVPIILVGNKKDLRQDEHTRRELAKMKQEP 158
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
           V + +G+ +A       ++E SAK K  V E+F    R
Sbjct: 159 VRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 79  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278
                + LA+      ++E SA  +  +  +F E +      PE   +  C
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRC 188

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 19/160 (11%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + F    F E Y PT+ + Y  +IEVD     L + DTAG E +  +R L   +    
Sbjct: 41  LLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
           ++ +S+ +  + ++I +  +    VK     VPI+LV NK DL              Q  
Sbjct: 101 LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEP 158
Query: 228 VPTLDGQALAQ---SWGCPFIEASAKNKTNVNEMFAEIVR 264
           V + +G+ +A    ++G  ++E SAK K  V E+F    R
Sbjct: 159 VRSEEGRDMANRISAFG--YLECSAKTKEGVREVFEMATR 196

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + F    F   Y PT+ + Y  +IEVD     L + DTAG E +   R L   +    
Sbjct: 21  LLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRARPLSYPDTDVI 80
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
           ++ +S+ +  + ++I +  +    VK     VPI+LV NK DL +            Q  
Sbjct: 81  LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTARELAKMKQEP 138
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
           V   +G+ +A   G   ++E SAK K  V E+F    R
Sbjct: 139 VKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 79  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278
                + LA+      ++E SA  +  +  +F E +      PE   +  C
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRC 188

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 79  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278
                + LA+      ++E SA  +  +  +F E +      PE   +  C
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRC 188

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 22  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 81
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 82  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 140
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278
                + LA+      ++E SA  +  +  +F E +      PE   +  C
Sbjct: 141 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRC 191

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 23  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVF 82
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 83  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 141
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278
                + LA+      ++E SA  +  +  +F E +      PE   +  C
Sbjct: 142 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRC 192

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 148 DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGS 207
           ++ P    + DTAG E+F  +RD Y    Q  ++++ +T+  T++++      + RV   
Sbjct: 60  NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--C 117
Query: 208 ERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           E +PI+L  NK+D+   + +  ++      +     + + SAK+  N  + F  + R++ 
Sbjct: 118 ENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 174
Query: 268 FNP 270
            +P
Sbjct: 175 GDP 177

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 20  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 79
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 80  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 138
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278
                + LA+      ++E SA  +  +  +F E +      PE   +  C
Sbjct: 139 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRC 189

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 21  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 80
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 81  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 139
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278
                + LA+      ++E SA  +  +  +F E +      PE   +  C
Sbjct: 140 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRC 190

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 79  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278
                + LA+      ++E SA  +  +  +F E +      PE   +  C
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRC 188

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
           + ++G F +KY  T+  + +      ++ P    + DTAG E+F  + D Y    Q  ++
Sbjct: 29  RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAII 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           ++ +T+  T++++      + RV   E +PI+L  NK+D+   + +  ++      +   
Sbjct: 89  MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 143
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
             + + SAK+  N  + F  + R++  +P
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDP 172

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 19/151 (12%)
Query: 129 FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH 188
           F E Y PT+ + Y  +IEVD     L + DTAG E +  +R L   +    ++ +S+ + 
Sbjct: 30  FPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 89
Query: 189 HTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQREVPTLDGQAL 236
            + ++I +  +    VK     VPI+LV NK DL              Q  V + +G+ +
Sbjct: 90  DSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDM 147
Query: 237 AQ---SWGCPFIEASAKNKTNVNEMFAEIVR 264
           A    ++G  ++E SAK K  V E+F    R
Sbjct: 148 ANRISAFG--YLECSAKTKEGVREVFEMATR 176

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 32/182 (17%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG- 178
           L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG E +  +R L      G 
Sbjct: 21  LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGE 80
Query: 179 ------------------FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
                             F++ +SL +  +F++++       R       PI+LV  KLD
Sbjct: 81  TYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLD 139
Query: 221 LASHQREVPTL-----------DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNF 268
           L   +  +  L            G A+A+  G   ++E SA  +  +  +F E +R +  
Sbjct: 140 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 199
Query: 269 NP 270
            P
Sbjct: 200 PP 201

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 29  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 88
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 89  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 147
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
                + LA+      ++E SA  +  +  +F E +      PE
Sbjct: 148 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 191

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 79  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIV 263
                + LA+      ++E SA  +  +  +F E +
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 23  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 82
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 83  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 141
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIV 263
                + LA+      ++E SA  +  +  +F E +
Sbjct: 142 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 21  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 80
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 81  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 139
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIV 263
                + LA+      ++E SA  +  +  +F E +
Sbjct: 140 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 79  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIV 263
                + LA+      ++E SA  +  +  +F E +
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 26  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 85
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 86  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 144
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
                + LA+      ++E SA  +  +  +F E +      PE
Sbjct: 145 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 188

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 79  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIV 263
                + LA+      ++E SA  +  +  +F E +
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 79  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIV 263
                + LA+      ++E SA  +  +  +F E +
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 79  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
                + LA+      ++E SA  +  +  +F E +      PE
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 79  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
                + LA+      ++E SA  +  +  +F E +      PE
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 22  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 81
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 82  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 140
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
                + LA+      ++E SA  +  +  +F E +      PE
Sbjct: 141 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 184

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 26  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 85
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 86  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 144
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
                + LA+      ++E SA  +  +  +F E +      PE
Sbjct: 145 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 188

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 79  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIV 263
                + LA+      ++E SA  +  +  +F E +
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + F  G     Y PT+ + +   ++      +L + DTAG E++  +R L   +    
Sbjct: 39  LLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98
Query: 180 VVVYSLTNHHTFQDIK-----QMKELITRVKGSERVPILLVANKLDL-ASHQREVPTLDG 233
           ++ +++ N  +F +I      ++K  I   K       +LV  K+DL      +V   +G
Sbjct: 99  LLCFAVNNRTSFDNISTKWEPEIKHYIDTAK------TVLVGLKVDLRKDGSDDVTKQEG 152
Query: 234 QALAQSWGC-PFIEASAKNKTNVNEMFAEIV 263
             L Q  GC  +IEAS+  K  +NE+F + V
Sbjct: 153 DDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 183

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + F  G     Y PT+ + +   ++      +L + DTAG E++  +R L   +    
Sbjct: 38  LLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 97
Query: 180 VVVYSLTNHHTFQDIK-----QMKELITRVKGSERVPILLVANKLDL-ASHQREVPTLDG 233
           ++ +++ N  +F +I      ++K  I   K       +LV  K+DL      +V   +G
Sbjct: 98  LLCFAVNNRTSFDNISTKWEPEIKHYIDTAK------TVLVGLKVDLRKDGSDDVTKQEG 151
Query: 234 QALAQSWGC-PFIEASAKNKTNVNEMFAEIV 263
             L Q  GC  +IEAS+  K  +NE+F + V
Sbjct: 152 DDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 182

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +  F  +Y P + D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 79  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIV 263
                + LA+      ++E SA  +  +  +F E +
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
           L + + +     +Y PT+ D Y   + +   P  L + DTAG E +  +R L       F
Sbjct: 19  LLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
           +V +S+ +  +F+++K+ K +        + P LLV  ++DL            + Q+ +
Sbjct: 79  LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIV 263
                + LA+      ++E SA  +  +  +F E +
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 123 QFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLE--ILDTAGTEQFASMRDLYIKNGQGFV 180
           + + G F + Y+ T+         +D    V++  + DTAG E+ A ++D+Y     G +
Sbjct: 30  RVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI 89
Query: 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW 240
           + + +T+  T Q++ +  +    V G+E  PI++ ANK+D+ + Q+    L  + L +  
Sbjct: 90  LFFDVTSRITCQNLARWVKEFQAVVGNE-APIVVCANKIDIKNRQKISKKLVMEVL-KGK 147
Query: 241 GCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
              + E SAK   N    F  + R     P+
Sbjct: 148 NYEYFEISAKTAHNFGLPFLHLARIFTGRPD 178

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 16/155 (10%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           AL   F   CF E Y PT+ + Y    E+D     L + DT+G+  + ++R L   +   
Sbjct: 43  ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102
Query: 179 FVVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLA---------SHQREV 228
            ++ + ++   T   + K+ K  I     + +  +LLV  K DL          S+ R+ 
Sbjct: 103 VLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRTDVSTLVELSNHRQT 160
Query: 229 PTL--DGQALAQSWGCP-FIEASA-KNKTNVNEMF 259
           P     G  +A+  G   +IE SA +++ +V ++F
Sbjct: 161 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 16/155 (10%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           AL   F   CF E Y PT+ + Y    E+D     L + DT+G+  + ++R L   +   
Sbjct: 22  ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81
Query: 179 FVVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLA---------SHQREV 228
            ++ + ++   T   + K+ K  I     + +  +LLV  K DL          S+ R+ 
Sbjct: 82  VLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRTDVSTLVELSNHRQT 139
Query: 229 PTL--DGQALAQSWGCP-FIEASA-KNKTNVNEMF 259
           P     G  +A+  G   +IE SA +++ +V ++F
Sbjct: 140 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 16/155 (10%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
           AL   F   CF E Y PT+ + Y    E+D     L + DT+G+  + ++R L   +   
Sbjct: 38  ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 97
Query: 179 FVVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLA---------SHQREV 228
            ++ + ++   T   + K+ K  I     + +  +LLV  K DL          S+ R+ 
Sbjct: 98  VLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRTDVSTLVELSNHRQT 155
Query: 229 PTL--DGQALAQSWGCP-FIEASA-KNKTNVNEMF 259
           P     G  +A+  G   +IE SA +++ +V ++F
Sbjct: 156 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 190

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 124 FVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183
               C+ E Y PT+ + Y   +E ++    L + DT+G+  + ++R L   +    ++ +
Sbjct: 31  LAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCF 90
Query: 184 SLTNHHTFQD-IKQMKELITRVKGSERVPILLVANKLDLA---------SHQREVPTL-- 231
            ++   T    +K+ +  I     S RV  LL+  K DL          SHQ++ P    
Sbjct: 91  DISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTDLRTDLSTLMELSHQKQAPISYE 148
Query: 232 DGQALAQSWGCP-FIEASA-KNKTNVNEMF 259
            G A+A+  G   ++E SA  ++ +++ +F
Sbjct: 149 QGCAIAKQLGAEIYLEGSAFTSEKSIHSIF 178

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 124 FVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183
               C+ E Y PT+ + Y   +E ++    L + DT+G+  + ++R L   +    ++ +
Sbjct: 30  LAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCF 89
Query: 184 SLTNHHTFQD-IKQMKELITRVKGSERVPILLVANKLDLA---------SHQREVPTL-- 231
            ++   T    +K+ +  I     S RV  LL+  K DL          SHQ++ P    
Sbjct: 90  DISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTDLRTDLSTLMELSHQKQAPISYE 147
Query: 232 DGQALAQSWGCP-FIEASA-KNKTNVNEMF 259
            G A+A+  G   ++E SA  ++ +++ +F
Sbjct: 148 QGCAIAKQLGAEIYLEGSAFTSEKSIHSIF 177

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 128 CFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTN 187
           C+ E Y PT+ + Y   +E ++    L + DT+G+  + ++R L   +    ++ + ++ 
Sbjct: 51  CYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR 110
Query: 188 HHTFQD-IKQMKELITRVKGSERVPILLVANKLDLA---------SHQREVPTL--DGQA 235
             T    +K+ +  I     S RV  LL+  K DL          SHQ++ P     G A
Sbjct: 111 PETVDSALKKWRTEILDYCPSTRV--LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA 168
Query: 236 LAQSWGCP-FIEASA-KNKTNVNEMF 259
           +A+  G   ++E SA  ++ +++ +F
Sbjct: 169 IAKQLGAEIYLEGSAFTSEKSIHSIF 194

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-100
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	4e-99
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	5e-98
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	7e-98
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-97
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-97
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-97
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	5e-97
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-96
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-96
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	4e-96
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	4e-96
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-94
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-94
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	3e-94
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-92
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	5e-92
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	1e-91
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	3e-89
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	2e-88
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	8e-88
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	4e-83
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	8e-82
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-74
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-50
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-50
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	2e-50
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	3e-50
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	5e-50
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-49
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	3e-49
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	6e-49
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-48
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-48
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-48
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-48
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-48
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	7e-48
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	8e-48
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	8e-48
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	9e-48
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-47
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	2e-47
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-47
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	4e-47
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	4e-47
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	4e-47
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	7e-47
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	8e-47
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-46
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-46
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-46
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-46
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-46
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-46
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	4e-46
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	7e-46
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-45
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-45
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-45
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-45
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-45
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	3e-45
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	4e-45
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-44
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	4e-44
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	5e-44
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	7e-44
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	3e-42
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	3e-40
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	6e-40
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	8e-40
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	4e-39
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	5e-39
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-36
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	4e-35
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	3e-33
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	1e-32
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-32
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	4e-32
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	6e-31
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-30
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-30
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	7e-30
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-21
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	5e-15
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	8e-07
3llu_A	196	RAS-related GTP-binding protein C; structural geno	9e-07
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	1e-06
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2ged_A	193	SR-beta, signal recognition particle receptor beta	3e-05
2fh5_B	214	SR-beta, signal recognition particle receptor beta	4e-05
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	8e-05
2wji_A	165	Ferrous iron transport protein B homolog; membrane	9e-05
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	2e-04
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	2e-04
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	3e-04
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	3e-04
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	3e-04
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	3e-04
1nrj_B	218	SR-beta, signal recognition particle receptor beta	7e-04

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  289 bits (742), Expect = e-100
 Identities = 123/166 (74%), Positives = 146/166 (87%), Gaps = 1/166 (0%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MRE+KVVVLGSGGVGKSALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  E+VP++LV NK+DL
Sbjct: 61  TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
              +REV + +G+ALA+ WGCPF+E SAK+KT V+E+FAEIVR+MN
Sbjct: 121 -ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  287 bits (738), Expect = 4e-99
 Identities = 67/195 (34%), Positives = 110/195 (56%), Gaps = 5/195 (2%)

Query: 92  PRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAP 151
                     +R  KVV+LG   VGK++L  QFV G F E YDPT+E+ Y K + + K  
Sbjct: 12  ENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDE 71

Query: 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP 211
             L ++DTAG ++++ +   +I    G+V+VYS+T+ H+FQ I+ + + +    G  RVP
Sbjct: 72  FHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP 131

Query: 212 ILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
           ++LV NK DL S +REV  ++G+ LA+SWG  F+E+SA+       +F ++++E+     
Sbjct: 132 VVLVGNKADL-SPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVEN 190

Query: 272 KDNASFCWCSSCSIL 286
                      C ++
Sbjct: 191 SYGQE----RRCHLM 201

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  284 bits (730), Expect = 5e-98
 Identities = 72/173 (41%), Positives = 113/173 (65%), Gaps = 1/173 (0%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           +   KV+++GSGGVGKSALT+QF+   F+E Y+PT  D YRK++ +D     ++ILDTAG
Sbjct: 16  LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 75

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
            E +A++RD Y ++G+GF+ V+S+T   +F      +E I RVK  E VP LLV NK DL
Sbjct: 76  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
              +R+V   + +  A+ W   ++E SAK + NV+++F +++RE+     +D+
Sbjct: 136 -EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 187

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  284 bits (729), Expect = 7e-98
 Identities = 84/174 (48%), Positives = 122/174 (70%), Gaps = 3/174 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           M E+K+VV+G+GGVGKSALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG
Sbjct: 19  MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 78

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
            E++++MRD Y++ G+GF+ V+++ N  +F DI   +E I RVK S+ VP++LV NK DL
Sbjct: 79  QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN-FNPEKDN 274
               R V T     LA+S+G PFIE SAK +  V + F  +VRE+  +  +K N
Sbjct: 139 --PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLN 190

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  283 bits (726), Expect = 1e-97
 Identities = 71/167 (42%), Positives = 110/167 (65%), Gaps = 1/167 (0%)

Query: 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
           ++   KV+++GSGGVGKSALT+QF+   F+E Y+PT  D YRK++ +D     ++ILDTA
Sbjct: 1   SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTA 60

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
           G E +A++RD Y ++G+GF+ V+S+T   +F      +E I RVK  E VP LLV NK D
Sbjct: 61  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 120

Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           L   +R+V   + +  A  W   ++E SAK + NV+++F +++RE+ 
Sbjct: 121 L-EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  282 bits (725), Expect = 3e-97
 Identities = 84/190 (44%), Positives = 125/190 (65%), Gaps = 7/190 (3%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
             E+K+VV+G+ GVGKSALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG
Sbjct: 2   STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 61

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
            E++++MRD Y++ G+GF+ V+++ N  +F+DI   +E I RVK SE VP++LV NK DL
Sbjct: 62  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 121

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM-----NFNPEKDNAS 276
               R V T   Q LA+S+G PFIE SAK +  V++ F  +VRE+       + +     
Sbjct: 122 --PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKK 179

Query: 277 FCWCSSCSIL 286
               + C I+
Sbjct: 180 KKSKTKCVIM 189

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  282 bits (723), Expect = 3e-97
 Identities = 106/167 (63%), Positives = 133/167 (79%), Gaps = 2/167 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MRE+K+VVLGSGGVGKSALTVQFV G F+EKYDPTIED YRK++EVD   C+LEILDTAG
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQF +MRDLY+KNGQGF +VYS+T   TF D++ ++E I RVK +E VP++LV NK DL
Sbjct: 61  TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120

Query: 222 ASHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMN 267
              +R V    GQ LA+ W  C F+E+SAK+K NVNE+F ++VR++N
Sbjct: 121 -EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  282 bits (723), Expect = 5e-97
 Identities = 61/165 (36%), Positives = 102/165 (61%), Gaps = 1/165 (0%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
           +  K+ +LG   VGKS+LT+QFV G F++ YDPTIE+ + K I V+     L+++DTAG 
Sbjct: 5   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 64

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
           ++++     Y  +  G+++VYS+T+  +F+ IK +   +  + G  ++PI+LV NK DL 
Sbjct: 65  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL- 123

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
             +R +   +G+ALA+SW   F+E+SAK      ++F  I+ E  
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 168

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  280 bits (719), Expect = 1e-96
 Identities = 82/166 (49%), Positives = 121/166 (72%), Gaps = 2/166 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           M E+K+VV+G+GGVGKSALT+Q +   F+++ DPTIED YRK++ +D   C+L+ILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
            E++++MRD Y++ G+GF+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK DL
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           A   R V +   Q LA+S+G P+IE SAK +  V + F  +VRE+ 
Sbjct: 121 A--ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  280 bits (720), Expect = 1e-96
 Identities = 74/171 (43%), Positives = 109/171 (63%), Gaps = 1/171 (0%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
              K+VV+G GGVGKSALT+QF+   F+  YDPTIED Y K   VD  P  L+ILDTAG 
Sbjct: 8   ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ 67

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
           E+F +MR+ Y++ G GF++V+++ +  +F ++ ++   I RVK  +  P++LV NK DL 
Sbjct: 68  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL- 126

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKD 273
             QR+VP  +  A   S    + EASAK + NV+E F ++VR +    E++
Sbjct: 127 ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 177

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  279 bits (717), Expect = 4e-96
 Identities = 76/167 (45%), Positives = 115/167 (68%), Gaps = 2/167 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           +  +K+VV+G GGVGKSALT+QF    F++ YDPTIED Y K  E+D    +L++LDTAG
Sbjct: 16  LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAG 75

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
            E+F++MR+ Y++ G GF++VYS+T+  +F+ + +  +LI RVK  E  P++LVANK+DL
Sbjct: 76  QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAK-NKTNVNEMFAEIVREMN 267
             H R+V    G+ +A  +  P+IE SAK    NV++ F ++VR + 
Sbjct: 136 -MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  280 bits (719), Expect = 4e-96
 Identities = 72/175 (41%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           +   KV+++GSGGVGKSALT+QF+   F+E Y+PT  D YRK++ +D     ++ILDTAG
Sbjct: 12  LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 71

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
            E +A++RD Y ++G+GF+ V+S+T   +F      +E I RVK  E VP LLV NK DL
Sbjct: 72  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNAS 276
              +R+V   + +  A+ W   ++E SAK + NV+++F +++RE+     +D+  
Sbjct: 132 -EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKE 185

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  275 bits (706), Expect = 2e-94
 Identities = 55/169 (32%), Positives = 95/169 (56%), Gaps = 3/169 (1%)

Query: 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
           +M  ++VV+LG  GVGK++L   F      + ++   ED Y + + VD     L ++DT 
Sbjct: 1   SMALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTW 60

Query: 161 GTEQF--ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANK 218
             E+   +  ++  ++ G  +V+VYS+ +  +F+   +++  + R   ++ VPI+LV NK
Sbjct: 61  EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNK 120

Query: 219 LDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
            DLA   REV   +G+A A  + C FIE SA  + NV E+F  +VR++ 
Sbjct: 121 ADLA-RCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLR 168

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  275 bits (705), Expect = 2e-94
 Identities = 74/166 (44%), Positives = 109/166 (65%), Gaps = 2/166 (1%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
            +++V V G+GGVGKS+L ++FV G F E Y PT+ED YR+ I  DK+ C L+I DT G+
Sbjct: 2   NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 61

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDL 221
            QF +M+ L I  G  F++VYS+T+  + +++K + E I  +KG  E +PI+LV NK D 
Sbjct: 62  HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
            S  REV + + +ALA++W C F+E SAK   NV E+F E++    
Sbjct: 122 -SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEK 166

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  275 bits (706), Expect = 3e-94
 Identities = 65/167 (38%), Positives = 103/167 (61%), Gaps = 3/167 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
             E K+ + G  GVGKSAL V+F++  F+ +YDPT+E  YR +  +D     +EILDTAG
Sbjct: 26  SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAG 85

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
            E     R+ +++ G+GFV+VY +T+  +F+++  +K ++  +K  + V ++LV NK DL
Sbjct: 86  QEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 144

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAK-NKTNVNEMFAEIVREMN 267
             H R+V T +G+ LA    C F E SA   + N+ E+F E+ RE+ 
Sbjct: 145 D-HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR 190

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  271 bits (694), Expect = 2e-92
 Identities = 77/196 (39%), Positives = 117/196 (59%), Gaps = 13/196 (6%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
             +++VVV G+GGVGKS+L ++FV G F + Y PTIED YR+ I  DK+ C L+I DT G
Sbjct: 6   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTG 65

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGS-ERVPILLVANKLD 220
           + QF +M+ L I  G  F++V+S+T+  + +++  + +LI ++KGS E +P++LV NK D
Sbjct: 66  SHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125

Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN----------FNP 270
               QREV T + QA+AQ W C F+E SAK   NV E+F E++                 
Sbjct: 126 E--TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRS 183

Query: 271 EKDNASFCWCSSCSIL 286
            K   +      C+++
Sbjct: 184 GKQKRTDRVKGKCTLM 199

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  268 bits (689), Expect = 5e-92
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 2/163 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164
           +KV++LG+ GVGKSAL   F  G             Y + I VD     L + D    + 
Sbjct: 3   YKVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61

Query: 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH 224
              +    +  G  +V+VYS+T+  +F+   +++  + R + ++ VPI+LV NK DL   
Sbjct: 62  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-R 120

Query: 225 QREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
            REV   +G+A A  + C FIE SA    NV  +F  +VR++ 
Sbjct: 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR 163

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  268 bits (688), Expect = 1e-91
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 3/176 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTA 160
              FKV+++G  GVGKS L   F        ++P   ED Y + I VDK    L + D  
Sbjct: 21  DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80

Query: 161 GTEQF-ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKL 219
                   +RD  ++ G  F++V+S+T+  +F  + +    +   +    +P++LV NK 
Sbjct: 81  EQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 140

Query: 220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNA 275
           DLA   REV   +G+ LA +  C  IE SA    N  E+F   VR++     +++A
Sbjct: 141 DLA-RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHA 195

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  262 bits (671), Expect = 3e-89
 Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 3/165 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPT-IEDFYRKEIEVDKAPCVLEILDTAGTE 163
           FKV+++G  GVGKS L   F        ++    ED Y + I VDK    L + D     
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62

Query: 164 QF-ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
                ++D  ++ G  F++V+S+T+  +F  + +    +   +    +P++LV NK DLA
Sbjct: 63  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
              REV   +G+ LA +  C  IE SA    N  E+F   VR++ 
Sbjct: 123 -RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR 166

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  261 bits (669), Expect = 2e-88
 Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 8/195 (4%)

Query: 85  LVPTDLLPRCSIDNSFTMREFKVVVLGSGGVGKSALTVQF--VSGCFMEKYDPTIEDFYR 142
           L    +     I +      ++VV++G  GVGKS L   F  V        +   ED Y 
Sbjct: 18  LYFQSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYE 77

Query: 143 KEIEVDKAPCVLEILD---TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKE 199
           + + VD     + +LD     G  ++  + D  ++ G  +++VYS+T+  +F+   +++ 
Sbjct: 78  RTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI 135

Query: 200 LITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259
            + R + +E +PI+LV NK DL    REV   +G+A A  + C FIE SA  + NV E+F
Sbjct: 136 QLRRARQTEDIPIILVGNKSDLV-RCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194

Query: 260 AEIVREMNFNPEKDN 274
             IVR++    +   
Sbjct: 195 EGIVRQVRLRRDSKE 209

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  258 bits (662), Expect = 8e-88
 Identities = 62/168 (36%), Positives = 91/168 (54%), Gaps = 5/168 (2%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
            E  + +LG  G GKSALTV+F++  F+ +YDP +ED Y  E  VD  P  L ++DTA  
Sbjct: 20  LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADL 79

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELIT-RVK-GSERVPILLVANKLD 220
           +   +  + Y+     F+VVYS+ +  +F       EL+    K     +P LL+ NKLD
Sbjct: 80  DTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138

Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAK-NKTNVNEMFAEIVREMN 267
           + +  R+V   +G ALA  +GC F E SA  +  +V  +F E VRE  
Sbjct: 139 M-AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  247 bits (632), Expect = 4e-83
 Identities = 55/182 (30%), Positives = 95/182 (52%), Gaps = 8/182 (4%)

Query: 100 FTMREFKVVVLGSGGVGKSALTVQF--VSGCFMEKYDPTIEDFYRKEIEVDKAPC---VL 154
           F M  ++VV++G  GVGKS L   F  V        +   ED Y + + VD       +L
Sbjct: 2   FGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILL 61

Query: 155 EILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILL 214
           ++ +  G  ++  + D  ++ G  +++VYS+T+  +F+   +++  + R + +E +PI+L
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119

Query: 215 VANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
           V NK DL    REV   +G+A A  +   FIE SA  + NV E+F  IVR++    +   
Sbjct: 120 VGNKSDLV-RXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178

Query: 275 AS 276
            +
Sbjct: 179 KN 180

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  243 bits (623), Expect = 8e-82
 Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 8/170 (4%)

Query: 99  SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILD 158
            F   E KV ++G+   GKSAL  ++++G ++++  P     ++KEI VD    +L I D
Sbjct: 15  YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRD 73

Query: 159 TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANK 218
             G  +       +       V V+SL +  +FQ +      +   + +  VP++LV  +
Sbjct: 74  EGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQ 128

Query: 219 LDL-ASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVREM 266
             + A++ R +     + L+     C + E  A    NV  +F ++ +++
Sbjct: 129 DAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  225 bits (575), Expect = 1e-74
 Identities = 41/173 (23%), Positives = 83/173 (47%), Gaps = 12/173 (6%)

Query: 99  SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILD 158
             ++ E ++ VLG    GKS+L  +F++G + +  + T  + Y+KE+ VD    ++ I +
Sbjct: 2   MRSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIRE 60

Query: 159 TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELIT--RVKGSERVPILLV- 215
            AG          +       + V+SL + ++FQ + ++   ++  R +G   + + LV 
Sbjct: 61  EAGAP-----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115

Query: 216 -ANKLDLASHQREVPTLDGQAL-AQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             +++   S  R V     +AL A    C + E  A    NV+ +F E+ +++
Sbjct: 116 TQDRISA-SSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  163 bits (414), Expect = 2e-50
 Identities = 60/167 (35%), Positives = 87/167 (52%), Gaps = 5/167 (2%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTA 160
           +RE KV +LG  GVGKS++  +FV   F    +PTI   F  K ++         I DTA
Sbjct: 4   LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 63

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKL 219
           G E+F ++  +Y +     ++VY +T   TF  +K  ++EL  R  G   + + +  NK 
Sbjct: 64  GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVREL--RQHGPPSIVVAIAGNKC 121

Query: 220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           DL    REV   D +  A S    F+E SAKN  N+NE+F EI R +
Sbjct: 122 DLT-DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  164 bits (417), Expect = 2e-50
 Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 13/186 (6%)

Query: 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
             +  K V +G G VGK+ + + + S  F   Y PT+ D +   + VD     L + DTA
Sbjct: 6   VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTA 65

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI--KQMKELITRVKGSERVPILLVANK 218
           G E ++ +R L  +    FV+ +SL +  +++++  K M EL    + +  VPI+LV  K
Sbjct: 66  GQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR---RFAPNVPIVLVGTK 122

Query: 219 LDL-------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNP 270
           LDL       A H   + +  G+ L +  G   +IE S+K + NV  +F   ++ +   P
Sbjct: 123 LDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182

Query: 271 EKDNAS 276
            +    
Sbjct: 183 RRKEVP 188

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  162 bits (413), Expect = 2e-50
 Identities = 62/167 (37%), Positives = 94/167 (56%), Gaps = 5/167 (2%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTA 160
           + +FK+V+LG   VGKS+L ++FV G F E  + TI   F  + + +D      EI DTA
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKL 219
           G E++ S+  +Y +  Q  +VVY +TN  +F   K  +KEL  + + S  + I L  NK 
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL--QRQASPNIVIALSGNKA 121

Query: 220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           DLA ++R V   + Q+ A      F+E SAK   NVNE+F  I +++
Sbjct: 122 DLA-NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  163 bits (414), Expect = 3e-50
 Identities = 62/175 (35%), Positives = 91/175 (52%), Gaps = 5/175 (2%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTA 160
           +RE KV +LG  GVGKS++  +FV   F     PTI   F  K +          I DTA
Sbjct: 21  IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 80

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKL 219
           G E+F S+  +Y +     V+VY +T   +F  +K+ +KEL  +  G E + + +  NK 
Sbjct: 81  GQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL--KEHGPENIVMAIAGNKC 138

Query: 220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
           DL+   REVP  D +  A+S G   +E SAKN  N+ E+F  I R++      +N
Sbjct: 139 DLS-DIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHEN 192

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  163 bits (415), Expect = 5e-50
 Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI--EDFYRKEIEVDKAPCVLEILDTAGT 162
           +K+ ++G GGVGK+    + + G F + Y+ T+   +     ++         + DTAG 
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDL 221
           E+ A ++D+Y     G ++ + +T+  T Q++ + +KE   +       PI++ ANK+D+
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEF--QAVVGNEAPIVVCANKIDI 129

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             +++++       + +     + E SAK   N    F  + R  
Sbjct: 130 K-NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIF 173

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  161 bits (409), Expect = 2e-49
 Identities = 61/172 (35%), Positives = 96/172 (55%), Gaps = 5/172 (2%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
            K+V+LG  G GKS+L ++FV   F+E  + TI   F+ + + V+ A    EI DTAG E
Sbjct: 13  AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           ++ S+  +Y +     ++V+ +TN  +F+  K+ ++EL  + +G+  + + L  NK DL 
Sbjct: 73  RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQEL--QAQGNPNMVMALAGNKSDLL 130

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
              R+V   D Q  AQ  G  F+E SAK  TNV E+F EI R +      +N
Sbjct: 131 -DARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTEN 181

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  159 bits (406), Expect = 3e-49
 Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 5/164 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FKVV+LG G VGK++L +++    F +K+  T+   F  K++ +      L I DTAG E
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F ++  +Y ++  G ++VY +T+  +FQ +K  +KEL  R      + + +V NK+DL 
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL--RKMLGNEICLCIVGNKIDLE 124

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             +R V   + ++ A+S G      SAK    + E+F ++ + M
Sbjct: 125 -KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  159 bits (405), Expect = 6e-49
 Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 5/166 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCV-LEILDTAGT 162
            K+VVLG G  GK++LT  F    F ++Y  TI  DF+ + I +     V L+I D  G 
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELIT-RVKGSERVPILLVANKLD 220
                M D YI   QG ++VY +TN+ +F++++     +     +   +  + LV NK+D
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126

Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           L  H R +         Q  G      SAK   +V   F ++  E+
Sbjct: 127 LE-HMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  159 bits (405), Expect = 1e-48
 Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 5/177 (2%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTA 160
           +R+FK+V LG   VGK++L  +F+   F   Y  TI  DF  K + ++     L++ DTA
Sbjct: 14  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 73

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKL 219
           G E+F S+   YI++    VVVY +TN ++FQ   + + ++  R +    V I+LV NK 
Sbjct: 74  GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV--RTERGSDVIIMLVGNKT 131

Query: 220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNAS 276
           DLA  +R+V   +G+  A+     FIE SAK   NV ++F  +   +       + S
Sbjct: 132 DLA-DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS 187

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  158 bits (403), Expect = 1e-48
 Identities = 61/163 (37%), Positives = 91/163 (55%), Gaps = 5/163 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FKVV++G  GVGKS L  +F    F  +   TI  +F  + I+VD      +I DTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           ++ ++   Y +   G ++VY +  H T++++++ +KEL  R      + I+LV NK DL 
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL--RDHADSNIVIMLVGNKSDLR 147

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
            H R VPT + +A A+  G  FIE SA + TNV   F  I+ E
Sbjct: 148 -HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTE 189

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  158 bits (402), Expect = 2e-48
 Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 5/167 (2%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTA 160
           +R+FK+V LG   VGK++L  +F+   F   Y  TI  DF  K + ++     L++ DTA
Sbjct: 12  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 71

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKL 219
           G E+F S+   YI++    VVVY +TN ++F    + + ++  R +    V I+LV NK 
Sbjct: 72  GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDV--RTERGSDVIIMLVGNKT 129

Query: 220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           DL+  +R+V T +G+  A+     FIE SAK   NV ++F  +   +
Sbjct: 130 DLS-DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  158 bits (402), Expect = 2e-48
 Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 6/168 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCV-LEILDTAGT 162
            KV++LG  GVGK++L  ++V+  + ++Y  TI  DF  KE+ VD      +++ DTAG 
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELIT--RVKGSERVPILLVANKL 219
           E+F S+   + +     V+VY +TN  +F++IK    E +    V   E  P +++ NK+
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128

Query: 220 DLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
           D    ++ V     Q LA+S G  P    SAKN  NV+  F EI R  
Sbjct: 129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  158 bits (402), Expect = 2e-48
 Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 5/163 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FKVV++G  GVGK+ L  +F    F      TI  +F  + + +  A    +I DTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           ++ ++   Y +   G ++V+ LT H T+  +++ +KEL         + ++LV NK DL+
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKEL--YDHAEATIVVMLVGNKSDLS 143

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
              REVPT + +  A++ G  F+E SA + TNV   F  +++E
Sbjct: 144 -QAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKE 185

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  157 bits (399), Expect = 7e-48
 Identities = 60/180 (33%), Positives = 90/180 (50%), Gaps = 8/180 (4%)

Query: 88  TDLLPRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIE 146
           + L+PR SI + F    FK +V+GS G GKS L  QF+   F +  + TI  +F  + + 
Sbjct: 12  SGLVPRGSIWSDFL---FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVN 68

Query: 147 VDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVK 205
           V      L+I DTAG E+F S+   Y +   G ++VY +T+  T+  +   + +   R  
Sbjct: 69  VGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDA--RTL 126

Query: 206 GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
            S  + ++L  NK DL   +REV  L+    AQ     F+E SA    NV E F +  R 
Sbjct: 127 ASPNIVVILCGNKKDLD-PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCART 185

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  157 bits (399), Expect = 8e-48
 Identities = 61/163 (37%), Positives = 90/163 (55%), Gaps = 5/163 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FKVV++G  GVGKS L  +F    F  +   TI  +F  + I+VD      +I DTAG E
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           ++  +   Y +   G ++VY +  H T++++++ +KEL  R      + I+LV NK DL 
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL--RDHADSNIVIMLVGNKSDLR 123

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
            H R VPT + +A A+     FIE SA + TNV E F  I+ E
Sbjct: 124 -HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE 165

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  157 bits (399), Expect = 8e-48
 Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 9/178 (5%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FK+V++G+ GVGK+ L  +F  G F      TI  DF  K +E++     L+I DTAG E
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F S+   Y ++    ++ Y +T   +F+ + + ++E+      S +V  +LV NK+DLA
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI--EQYASNKVITVLVGNKIDLA 144

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE----MNFNPEKDNAS 276
             +REV     +  +++    ++E SAK   NV ++F ++          N   +N S
Sbjct: 145 -ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVS 201

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  156 bits (397), Expect = 9e-48
 Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 5/163 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK +++G  GVGKS L  QF    FM     TI  +F  + IEV      L+I DTAG E
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F ++   Y +   G ++VY +T   T+  +   + +   R   +    I+L+ NK DL 
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA--RNLTNPNTVIILIGNKADLE 133

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
             QR+V   + +  A+  G  F+EASAK   NV + F E  ++
Sbjct: 134 -AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKK 175

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  156 bits (396), Expect = 2e-47
 Identities = 57/163 (34%), Positives = 86/163 (52%), Gaps = 5/163 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK +++G  GVGKS L +QF    F   +D TI  +F  + + +D     L+I DTAG E
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
            F S+   Y +   G ++VY +T   TF  +   +++   R   S  + I+L+ NK DL 
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA--RQHSSSNMVIMLIGNKSDLE 139

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
             +R+V   +G+A A+  G  F+E SAK   NV E F    +E
Sbjct: 140 -SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKE 181

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  156 bits (396), Expect = 2e-47
 Identities = 63/164 (38%), Positives = 94/164 (57%), Gaps = 5/164 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FK++++G  GVGKS L ++F    + E Y  TI  DF  + IE+D     L+I DTAG E
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F ++   Y +   G +VVY +T+  +F ++KQ ++E+      SE V  LLV NK DL 
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDL- 133

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           + ++ V     +  A S G PF+E SAKN TNV + F  +  E+
Sbjct: 134 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  155 bits (394), Expect = 3e-47
 Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 5/163 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK +V+G+ G GKS L  QF+   F +  + TI  +F  K I V      L+I DTAG E
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F S+   Y +   G ++VY +T+  T+  +   + +   R+  S+ + I+L  NK DL 
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA--RMLASQNIVIILCGNKKDLD 128

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
              REV  L+    AQ     F+E SA    NV E F +  R+
Sbjct: 129 -ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARK 170

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  155 bits (394), Expect = 4e-47
 Identities = 59/187 (31%), Positives = 98/187 (52%), Gaps = 9/187 (4%)

Query: 87  PTDLLPRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEI 145
            + L+PR S  +  + + +K+V+ G   VGKS+  ++     F E    T+  DF  K +
Sbjct: 11  SSGLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTL 70

Query: 146 EVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRV 204
            VD    VL++ DTAG E+F S+   Y +   G +++Y +T   +F +I++ +  +    
Sbjct: 71  IVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMI--ED 128

Query: 205 KGSERVPILLVANKLDLA-----SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259
              E VPI+LV NK D+        Q+ VP   G+ LA ++G  F E SAK+ +N+ E  
Sbjct: 129 AAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAV 188

Query: 260 AEIVREM 266
             + RE+
Sbjct: 189 LHLAREV 195

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  155 bits (394), Expect = 4e-47
 Identities = 63/164 (38%), Positives = 94/164 (57%), Gaps = 5/164 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FK++++G  GVGKS L ++F    + E Y  TI  DF  + IE+D     L+I DTAG E
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F ++   Y +   G +VVY +T+  +F ++KQ ++E+      SE V  LLV NK DL 
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDL- 150

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           + ++ V     +  A S G PF+E SAKN TNV + F  +  E+
Sbjct: 151 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 194

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  154 bits (391), Expect = 4e-47
 Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 6/164 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
            K+VV+G+G VGKS++  ++  G F + Y  TI  DF  ++I+V+     L + DTAG E
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F ++   Y +  Q  V+V+S T+  +F+ I    ++++        +P  LV NK+DL 
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE---VGDIPTALVQNKIDL- 121

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
                +   + + LA+     F   S K   NV+E+F  +  + 
Sbjct: 122 LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  154 bits (392), Expect = 7e-47
 Identities = 48/164 (29%), Positives = 85/164 (51%), Gaps = 5/164 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FK++++G+  VGK++   ++    F   +  T+  DF  K +        L+I DTAG E
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           ++ ++   Y +   GF+++Y + N  +F  ++    ++  +    +   ++LV NK DL 
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI--KTYSWDNAQVILVGNKCDL- 139

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             +R VP  DG+ LA   G  F EASAK   NV ++F  +V  +
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  153 bits (390), Expect = 8e-47
 Identities = 61/172 (35%), Positives = 99/172 (57%), Gaps = 7/172 (4%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FKV++LG GGVGKS+L  ++V+  F  +   TI  +F  K++EVD     ++I DTAG E
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELIT--RVKGSERVPILLVANKLD 220
           +F S+R  + +     ++ +S+ +  +FQ++    KE I    VK  E  P +++ NK+D
Sbjct: 68  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127

Query: 221 LASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNPE 271
           ++  +R+V T + QA  +  G  P+ E SAK+ TNV   F E VR +    +
Sbjct: 128 IS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATED 177

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  153 bits (390), Expect = 1e-46
 Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 5/164 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FK++++G+  VGK++   ++    F   +  T+  DF  K +   +    L+I DTAG E
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           ++ ++   Y +   GF+++Y +TN  +F  ++    ++  +    +   ++LV NK D+ 
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI--KTYSWDNAQVILVGNKCDME 141

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             +R VPT  GQ LA+  G  F EASAK   +V + F  +V  +
Sbjct: 142 -EERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  154 bits (391), Expect = 1e-46
 Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 5/163 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
            K++++G  GVGKS+L ++F    F  +   TI  DF  K I VD     L I DTAG E
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F ++   Y +  QG ++VY +T   TF  +   + E +        +  +LV NK+D  
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNE-LETYCTRNDIVNMLVGNKIDK- 133

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
              REV   +G   A+     FIEASAK    V   F E+V +
Sbjct: 134 -ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEK 175

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  154 bits (392), Expect = 1e-46
 Identities = 42/174 (24%), Positives = 88/174 (50%), Gaps = 8/174 (4%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK+V++G GG GK+    + ++G F +KY  T+  + +      ++ P    + DTAG E
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F  +RD Y    Q  ++++ +T+  T++++    ++L   V+  E +PI+L  NK+D+ 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL---VRVCENIPIVLCGNKVDI- 131

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNAS 276
             ++           +     + + SAK+  N  + F  + R++  +P  +  +
Sbjct: 132 KDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA 183

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  154 bits (391), Expect = 1e-46
 Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 5/164 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FK++++G+  VGK++   ++    F   +  T+  DF  K I  +     L+I DTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           ++ ++   Y +   GF+++Y +TN  +F  ++    ++  +    +   +LLV NK D+ 
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI--KTYSWDNAQVLLVGNKCDM- 125

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             +R V +  G+ LA   G  F EASAK+  NV + F  +V  +
Sbjct: 126 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  153 bits (389), Expect = 2e-46
 Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 5/164 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FK++++G  GVGK+ +  +F    F   +  TI  DF  + IE+D     L+I DTAG E
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F ++   Y +   G ++VY +TN  +F +I+  ++ +      S  V  +++ NK D+ 
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI--EEHASADVEKMILGNKCDVN 126

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             +R+V    G+ LA  +G  F+E SAK   NV   F  + R++
Sbjct: 127 -DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  152 bits (387), Expect = 2e-46
 Identities = 62/164 (37%), Positives = 94/164 (57%), Gaps = 6/164 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
            K++++G  GVGKS L V+FV   F   +  TI  DF  K ++++     L+I DTAG E
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F ++   Y +   G ++VY +T+  TF +IKQ  K +      ++   +LLV NK D+ 
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTV--NEHANDEAQLLLVGNKSDM- 120

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
              R V    G+ALA+  G PFIE+SAKN  NVNE+F  + + +
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  153 bits (388), Expect = 4e-46
 Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 6/164 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
            K++++G  GVGKS L V+FV   F   +  TI  DF  K ++++     L++ DTAG E
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F ++   Y +   G ++VY +T+  TF +IKQ  K +      ++   +LLV NK D+ 
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV--NEHANDEAQLLLVGNKSDM- 137

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
              R V    G+ALA+  G PFIE+SAKN  NVNE+F  + + +
Sbjct: 138 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  152 bits (386), Expect = 7e-46
 Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 5/164 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FK++++G+ GVGKS L ++F    +   Y  TI  DF  K +E+D     L+I DTAG E
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F ++   Y +   G ++VY +T+  +F  +K  ++E+      +  V  LLV NK DL 
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDL- 125

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             +R V     +  A +   PF+E SA + TNV + F  + R++
Sbjct: 126 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  152 bits (386), Expect = 1e-45
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 5/163 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FK+V++G  GVGKS L  +F    F      TI  +F  + +E++      +I DTAG E
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           ++ ++   Y +   G ++VY ++   ++++    + EL  R    + V + L+ NK DLA
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSEL--RENADDNVAVGLIGNKSDLA 131

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
            H R VPT + +  AQ     F E SA N  NV++ F E++  
Sbjct: 132 -HLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINT 173

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  151 bits (384), Expect = 1e-45
 Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 6/165 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FK+V++G   VGK+ +  +F +G F E+   TI  DF  K +E+      L+I DTAG E
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F ++   Y ++  G ++ Y +T   +F  +   ++++  R      +  LL+ NK DL+
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDV--RKYAGSNIVQLLIGNKSDLS 147

Query: 223 SHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
              REV   + Q+LA+ +     IE SAK+ +NV E F  +  E+
Sbjct: 148 -ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  152 bits (385), Expect = 1e-45
 Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 8/169 (4%)

Query: 105 FKVVVLGSGGVGKSALTVQFV--SGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEI--LDT 159
            KV V+G   VGKSAL   F      F++ Y  T   +     + +      +E+  LDT
Sbjct: 21  CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDT 80

Query: 160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELIT-RVKGSERVPILLVAN 217
           AG++ +      Y       ++V+ +++  +F+  K   + L + R      +  +LVAN
Sbjct: 81  AGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVAN 140

Query: 218 KLDLASHQREVPTLDGQALAQSWGCPFIEASAK-NKTNVNEMFAEIVRE 265
           K DL   + +V     Q  A +    F + SA     + +  F  I   
Sbjct: 141 KTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATT 189

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  151 bits (383), Expect = 2e-45
 Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 8/168 (4%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK++V+G   VGK+ LT +F +G F ++ + TI  DF  + +++D     +++ DTAG E
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 164 QF-ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDL 221
           +F  SM   Y +N    V VY +TN  +F  +   ++E   +   +  +P +LV NK DL
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEE-CKQHLLANDIPRILVGNKCDL 139

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNK---TNVNEMFAEIVREM 266
                +VPT   Q  A +   P  E SAKN     +V  +F  +  ++
Sbjct: 140 -RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  150 bits (381), Expect = 2e-45
 Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 6/164 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FK++++G  GVGKS+L ++F    F   Y  TI  DF  + +E++     L+I DTAG E
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F ++   Y +   G +VVY +T+  +F ++K+ + E+       + V  +LV NK D  
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN---CDDVCRILVGNKNDD- 125

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             ++ V T D    A   G    E SAK   NV EMF  I   +
Sbjct: 126 PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  150 bits (380), Expect = 3e-45
 Identities = 59/165 (35%), Positives = 96/165 (58%), Gaps = 6/165 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGT 162
           FKV+++G  GVGK+ L V+F  G F+   +  T+  DF  K ++VD     L++ DTAG 
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDL 221
           E+F S+   Y ++    +++Y +TN  +F +I+  + E+         V ++L+ NK+D 
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEI--HEYAQHDVALMLLGNKVDS 128

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           A H+R V   DG+ LA+ +G PF+E SAK   NV+  F  I +E+
Sbjct: 129 A-HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  150 bits (381), Expect = 4e-45
 Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 14/174 (8%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCV---------- 153
            K + LG  GVGK+++  Q+  G F  K+  T+  DF  K +                  
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71

Query: 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPI 212
           L++ DTAG E+F S+   + ++  GF++++ LTN  +F +++  + + +     SE   I
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQ-LQMHAYSENPDI 130

Query: 213 LLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           +L  NK DL   QR V   + + LA+ +G P+ E SA N TN++     ++  +
Sbjct: 131 VLCGNKSDL-EDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  148 bits (377), Expect = 1e-44
 Identities = 61/165 (36%), Positives = 93/165 (56%), Gaps = 6/165 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
            +V+++GS GVGK++L  +F    F E    T+  DF  K +E+      L+I DTAG E
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
           +F S+   Y ++ +G ++VY +T   TF D+ + MK +      SE   +LLV NKLD  
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI--DKYASEDAELLLVGNKLDC- 143

Query: 223 SHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREM 266
              RE+    G+  AQ   G  F EASAK+  NV+E+F ++V ++
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  148 bits (375), Expect = 4e-44
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 14/174 (8%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCV---------- 153
            K++ LG  GVGK+    ++    F  K+  T+  DF  K +  +               
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPI 212
           L++ DTAG E+F S+   + ++  GF++++ LT+  +F +++  M + +      E   I
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ-LQANAYCENPDI 144

Query: 213 LLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           +L+ NK DL   QREV     + LA  +G P+ E SA    NV +    ++  +
Sbjct: 145 VLIGNKADL-PDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  147 bits (373), Expect = 5e-44
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 13/185 (7%)

Query: 92  PRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAP 151
                      R  K V++G G VGK++L V + +  +  +Y PT  D +   + VD  P
Sbjct: 8   GGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRP 67

Query: 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP 211
             L++ DTAG ++F  +R L   N   F++ +S+ +  +FQ++ +      R     + P
Sbjct: 68  VRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH-CPKAP 126

Query: 212 ILLVANKLDL-----------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMF 259
           I+LV  + DL              ++ VP    + LA+      +IE SA  + N+ E+F
Sbjct: 127 IILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

Query: 260 AEIVR 264
              + 
Sbjct: 187 DAAIV 191

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  147 bits (373), Expect = 7e-44
 Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 5/165 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
            KV++LG  GVGK++L  Q+V+  F  +Y  TI  DF  KE+ VD     ++I DTAG E
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELIT--RVKGSERVPILLVANKLD 220
           +F S+   + +     V+V+ +T  +TF+ +     E +     +  E  P +++ NK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128

Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
           L  +++                P+ E SAK   NV + F  I R 
Sbjct: 129 L-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 172

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  143 bits (361), Expect = 3e-42
 Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 45/200 (22%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVD--------------- 148
           +K V+LG   VGKS++ ++     F E  + TI   F    + ++               
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67

Query: 149 ----------------------KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLT 186
                                       +I DTAG E++AS+  LY +     +VV+ ++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127

Query: 187 NHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFI 245
           N +T    K  + +L    K S    I+LVANK+D    + +V  L+ Q  AQ     FI
Sbjct: 128 NSNTLDRAKTWVNQL----KISSNYIIILVANKIDKN--KFQVDILEVQKYAQDNNLLFI 181

Query: 246 EASAKNKTNVNEMFAEIVRE 265
           + SAK  TN+  +F  +  E
Sbjct: 182 QTSAKTGTNIKNIFYMLAEE 201

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  137 bits (347), Expect = 3e-40
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 7/167 (4%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
            +  K+VV+G G VGK+ L + F  G     Y PT+ + +   ++      +L + DTAG
Sbjct: 21  KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVKGSERVPILLVANKL 219
            E++  +R L   +    ++ +++ N  +F +I      E+       +    +LV  K+
Sbjct: 81  QEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY---IDTAKTVLVGLKV 137

Query: 220 DLAS-HQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
           DL      +V   +G  L Q  GC  +IEAS+  K  +NE+F + V 
Sbjct: 138 DLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD 184

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  136 bits (343), Expect = 6e-40
 Identities = 61/169 (36%), Positives = 95/169 (56%), Gaps = 6/169 (3%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTA 160
           +   K+V+LG   VGKS++ ++FVS  F E  +PTI   F  + + +++     EI DTA
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKL 219
           G E+FAS+   Y +N Q  +VVY +T   +F   +  +KEL    + S+ + I LV NK+
Sbjct: 61  GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKEL--HEQASKDIIIALVGNKI 118

Query: 220 DLA--SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           D      +R+V   +G+ LA+  G  F E SAK   NVN++F  I  ++
Sbjct: 119 DXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  136 bits (344), Expect = 8e-40
 Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 17/187 (9%)

Query: 92  PRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAP 151
            R S+ +       K VV+G G VGK+ L + + +  F E+Y PT+ D Y   + V    
Sbjct: 6   GRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQ 65

Query: 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI--KQMKELITRVKGSER 209
            +L + DTAG E +  +R L       F++ +S+ N  +FQ++  + + EL    + +  
Sbjct: 66  YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK---EYAPN 122

Query: 210 VPILLVANKLDL-----------ASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNE 257
           VP LL+  ++DL              ++ +    GQ LA+  G C ++E SA  +  +  
Sbjct: 123 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 182

Query: 258 MFAEIVR 264
           +F E + 
Sbjct: 183 VFDEAII 189

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  134 bits (339), Expect = 4e-39
 Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 15/176 (8%)

Query: 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
             R  K V +G G VGK+ L + + S  F   Y PT+ D +   + V+ A   L + DTA
Sbjct: 5   ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTA 64

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI--KQMKELITRVKGSERVPILLVANK 218
           G E +  +R L  +    F++ +SL +  +++++  K + EL     G   VPI+LV  K
Sbjct: 65  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG---VPIVLVGTK 121

Query: 219 LDL---------ASHQREVPTLDGQALAQSWGCP-FIEASAKNKTNVNEMFAEIVR 264
           LDL               + T+ G+ L +  G P +IE S+K++ NV  +F   +R
Sbjct: 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  134 bits (340), Expect = 5e-39
 Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 19/191 (9%)

Query: 90  LLPRCSIDNS--FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEV 147
           L+PR S   +  F  +  K VV+G G VGK+ L + + +  F  +Y PT+ D Y   + V
Sbjct: 14  LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 73

Query: 148 DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVK 205
           D  P  L + DTAG E +  +R L       F++ +SL +  +F++++     E+     
Sbjct: 74  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR---H 130

Query: 206 GSERVPILLVANKLDL-----------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKT 253
                PI+LV  KLDL                 +    G A+A+  G   ++E SA  + 
Sbjct: 131 HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 190

Query: 254 NVNEMFAEIVR 264
            +  +F E +R
Sbjct: 191 GLKTVFDEAIR 201

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  127 bits (322), Expect = 2e-36
 Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 17/178 (9%)

Query: 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
           +M   K+VV+G G  GK+ L + F    F E Y PT+ + Y  +IEVD     L + DTA
Sbjct: 22  SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTA 81

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVKGSERVPILLVANK 218
           G E +  +R L   +    ++ +S+ +  + ++I +  + E+         VPI+LVANK
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN---VPIILVANK 138

Query: 219 LDL-----------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
            DL              Q  V T DG+A+A       ++E SAK K  V E+F    R
Sbjct: 139 KDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  124 bits (314), Expect = 4e-35
 Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 18/197 (9%)

Query: 92  PRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAP 151
                +    +R  KVV++G GG GK++L + F  G F E Y PT+ + Y   ++V   P
Sbjct: 22  SMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKP 81

Query: 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVKGSER 209
             L I DTAG + +  +R L+  +    ++ + +T+ ++F +I      E+    K    
Sbjct: 82  VHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK--- 138

Query: 210 VPILLVANKLDL-----------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNE 257
           VPI++V  K DL            +    V    GQ +A+S G   ++E SA+   NV+ 
Sbjct: 139 VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHA 198

Query: 258 MFAEIVREMNFNPEKDN 274
           +F E       +    N
Sbjct: 199 VFQEAAEVA-LSSRGRN 214

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  119 bits (300), Expect = 3e-33
 Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 20/191 (10%)

Query: 88  TDLLPRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEV 147
           + L+PR S   +      K+V++G G  GK+ L + F    F E Y PT+ + Y  +IEV
Sbjct: 12  SGLVPRGSHMAAI---RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEV 68

Query: 148 DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVK 205
           D     L + DTAG E +  +R L   +    ++ +S+ +  + ++I +    E+     
Sbjct: 69  DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK---H 125

Query: 206 GSERVPILLVANKLDL-----------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKT 253
               VPI+LV NK DL              Q  V + +G+ +A       ++E SAK K 
Sbjct: 126 FCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 185

Query: 254 NVNEMFAEIVR 264
            V E+F    R
Sbjct: 186 GVREVFEMATR 196

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  119 bits (300), Expect = 1e-32
 Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 10/153 (6%)

Query: 123 QFVSGCFMEKYDPTIEDFYRKEIEVDK--APCVLEILDTAGTEQFASMRDLYIKNGQ--- 177
           +F+     + +  T    Y K     K  +   L    T             + +G+   
Sbjct: 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLV 163

Query: 178 -GFVVVYSLTNH--HTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQ 234
            GF++   ++      F D  +    +       + PI++V  K D    +R +      
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG-VERYIRDAHTF 222

Query: 235 ALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           AL++      +E SA++  NV+  F+ +V+ ++
Sbjct: 223 ALSK-KNLQVVETSARSNVNVDLAFSTLVQLID 254

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  117 bits (294), Expect = 2e-32
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 17/178 (9%)

Query: 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
           + +  K VV+G G VGK+ L + + +  F  +Y PT+ D Y   + VD  P  L + DTA
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVKGSERVPILLVANK 218
           G E +  +R L        ++ +SL +  +F++++     E+          PI+LV  K
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN---TPIILVGTK 118

Query: 219 LDL-----------ASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVR 264
           LDL                 +    G A+A+  G   ++E SA  +  +  +F E +R
Sbjct: 119 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  116 bits (292), Expect = 4e-32
 Identities = 33/177 (18%), Positives = 69/177 (38%), Gaps = 18/177 (10%)

Query: 104 EFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIE-DFYRKEIEVDKAPCV---LEIL 157
             K++++G+ G GK+ L  Q +      +     T+  D     I++         L + 
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61

Query: 158 DTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHT-FQDIKQ-MKELITRVKGSERVPILLV 215
           D AG E+F S    ++     ++ VY L+        +K  +  +  R   +   P++LV
Sbjct: 62  DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR---ASSSPVILV 118

Query: 216 ANKLDLAS--HQREVPTLDGQALAQSWGCPFI-----EASAKNKTNVNEMFAEIVRE 265
              LD++    ++   +   + L    G P I       + +    + ++   I+ E
Sbjct: 119 GTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINE 175

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  113 bits (284), Expect = 6e-31
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 18/174 (10%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           K+VV+G    GK+AL   F   CF E Y PT+ + Y    E+D     L + DT+G+  +
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVKGSERVPILLVANKLDL-- 221
            ++R L   +    ++ + ++   T   + +    E+           +LLV  K DL  
Sbjct: 69  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN---TKMLLVGCKSDLRT 125

Query: 222 ---------ASHQREVPTLDGQALAQSWGC-PFIEASAK-NKTNVNEMFAEIVR 264
                       Q  V    G  +A+  G   +IE SA  ++ +V ++F     
Sbjct: 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 179

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  118 bits (298), Expect = 1e-30
 Identities = 30/184 (16%), Positives = 63/184 (34%), Gaps = 17/184 (9%)

Query: 93  RCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIE----- 146
           R   +    ++E KV ++G G  GK++L  Q +   F  K   T   +   K+       
Sbjct: 30  RSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGL 89

Query: 147 ---VDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELIT 202
               +   C+    D  G E   +    ++     ++++       T  +    ++ +  
Sbjct: 90  ENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEK 146

Query: 203 RVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262
               S   P+++V NK+D  +    +          +    F   S KN   V  +   +
Sbjct: 147 YGGKS---PVIVVMNKIDE-NPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202

Query: 263 VREM 266
              +
Sbjct: 203 KSAV 206

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  112 bits (283), Expect = 1e-30
 Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 18/190 (9%)

Query: 90  LLPRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDK 149
           L+PR S  +     + K+VV+G    GK+AL   F   CF E Y PT+ + Y    E+D 
Sbjct: 14  LVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDT 73

Query: 150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVKGS 207
               L + DT+G+  + ++R L   +    ++ + ++   T   + +    E+    +  
Sbjct: 74  QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ---EFC 130

Query: 208 ERVPILLVANKLDL-----------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKTN- 254
               +LLV  K DL              Q  V    G  +A+  G   +IE SA    N 
Sbjct: 131 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 190

Query: 255 VNEMFAEIVR 264
           V ++F     
Sbjct: 191 VRDIFHVATL 200

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  111 bits (279), Expect = 7e-30
 Identities = 36/193 (18%), Positives = 76/193 (39%), Gaps = 18/193 (9%)

Query: 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
            +   K+V++G    GK+A+       C+ E Y PT+ + Y   +E ++    L + DT+
Sbjct: 24  VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTS 83

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVKGSERVPILLVANK 218
           G+  + ++R L   +    ++ + ++   T     +    E++          +LL+  K
Sbjct: 84  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS---TRVLLIGCK 140

Query: 219 LDL-----------ASHQREVPTLDGQALAQSWGC-PFIEASAK-NKTNVNEMFAEIVRE 265
            DL              Q  +    G A+A+  G   ++E SA  ++ +++ +F      
Sbjct: 141 TDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 200

Query: 266 MNFNPEKDNASFC 278
               P        
Sbjct: 201 CLNKPSPLPQKSP 213

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 91.2 bits (226), Expect = 2e-21
 Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 17/186 (9%)

Query: 93  RCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPC 152
                +       K VV+G G VGK+ L + + +  F  +Y PT+ D Y   + VD  P 
Sbjct: 144 TAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPV 203

Query: 153 VLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVKGSERV 210
            L + DTAG E +  +R L       F++ +SL +  +F  ++     E+          
Sbjct: 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPN---T 260

Query: 211 PILLVANKLDL-----------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEM 258
           PI+LV  KLDL                 +    G A+A+  G   ++E SA  +  +  +
Sbjct: 261 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 320

Query: 259 FAEIVR 264
           F E +R
Sbjct: 321 FDEAIR 326

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 70.9 bits (174), Expect = 5e-15
 Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 20/189 (10%)

Query: 95  SIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKY-----------DPTIE-DFYR 142
           +I+ +     FK+V  G G  GK+   ++++     E             + T+  DF  
Sbjct: 5   TINFANREINFKIVYYGPGLSGKTTN-LKWIYSKVPEGRKGEMVSLATEDERTLFFDFLP 63

Query: 143 KEIE-VDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELI 201
            +I  V        +    G   + + R L ++   G V V     +    + + M+ + 
Sbjct: 64  LDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMR 123

Query: 202 TRVKGS----ERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
             +       + VPI++  NK DL      V  +    +      P +EA A     V E
Sbjct: 124 ENLAEYGLTLDDVPIVIQVNKRDLP-DALPVEMVR-AVVDPEGKFPVLEAVATEGKGVFE 181

Query: 258 MFAEIVREM 266
              E+ R +
Sbjct: 182 TLKEVSRLV 190

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 48.5 bits (115), Expect = 8e-07
 Identities = 27/177 (15%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE---DFYRKEIEVDKAPCVLEILDTAGT 162
           K++++G  G GKS++    +   +       +    D     +        L + D  G 
Sbjct: 5   KLLLMGRSGSGKSSM-RSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMT-LNLWDCGGQ 62

Query: 163 EQF-----ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRV-KGSERVPILLVA 216
           + F        +D   +  Q  + V+ + +    +DI+   + + ++ K S    I ++ 
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122

Query: 217 NKLDLAS-HQREVPTLDGQALAQSWGCPF------IEASAKNKTNVNEMFAEIVREM 266
           +K+DL    +RE                F         ++    ++ + +++IV  +
Sbjct: 123 HKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSL 179

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 47.3 bits (112), Expect = 9e-07
 Identities = 26/186 (13%), Positives = 64/186 (34%), Gaps = 19/186 (10%)

Query: 97  DNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFME---KYDPTIEDFYRKEIEVDKAPCV 153
           +  F   + +++++G    GKS++                + T    Y+ +I        
Sbjct: 13  NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTN-KIYKDDISNSSFVN- 70

Query: 154 LEILDTAGTEQF---ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERV 210
            +I D  G   F       ++  +     + V    + +     +    +    K +  +
Sbjct: 71  FQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDM 130

Query: 211 PILLVANKLDLASH------QREVPTLDGQALAQS----WGCPFIEASAKNKTNVNEMFA 260
              +  +K+D  S       QR++       LA +        F   S  + + + E F+
Sbjct: 131 NFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHS-IFEAFS 189

Query: 261 EIVREM 266
           ++V+++
Sbjct: 190 KVVQKL 195

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 36/152 (23%)

Query: 136 TIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRD--------------LYIKNGQGFVV 181
            + +     I +D  P  L I+DTAG      +R+                I+     + 
Sbjct: 42  VLRE----HIHIDGMP--LHIIDTAG------LREASDEVERIGIERAWQEIEQADRVLF 89

Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           +   T        +   E I R+    ++PI +V NK D+      +  ++G        
Sbjct: 90  MVDGTTTDAVDPAEIWPEFIARL--PAKLPITVVRNKADITGETLGMSEVNGH------- 140

Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNPEKD 273
              I  SA+    V+ +   + + M F+   +
Sbjct: 141 -ALIRLSARTGEGVDVLRNHLKQSMGFDTNME 171

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 33/155 (21%)

Query: 136 TIEDFYRKEIEVDKAPCVLEILDTAG---TEQFASMRDL-----------YIKNGQGFVV 181
            IE+        DK      + DTAG           +             +      + 
Sbjct: 271 YIEE----CFIHDKTM--FRLTDTAGLREAG------EEIEHEGIRRSRMKMAEADLILY 318

Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
           +  L       ++ +++EL      +     L VANKLD A++         +A+A   G
Sbjct: 319 LLDLGTERLDDELTEIRELKAAHPAA---KFLTVANKLDRAAN----ADALIRAIADGTG 371

Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNAS 276
              I  SA N   ++ +   +   +    +   AS
Sbjct: 372 TEVIGISALNGDGIDTLKQHMGDLVKNLDKLHEAS 406

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 24/176 (13%), Positives = 54/176 (30%), Gaps = 41/176 (23%)

Query: 107 VVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEI------EVDKAPCVLEILDTA 160
           V++ G  G GK+ + +              ++     +I        +    VLE+L   
Sbjct: 153 VLIDGVLGSGKTWVALDVCL-------SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK- 204

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNH--HTFQDIKQMKELITRVKGSERVPI-LLVAN 217
                     L  +    +    S ++H  +    I  ++  + R+  S+     LLV  
Sbjct: 205 ----------LLYQIDPNWT---SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-- 249

Query: 218 KLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKD 273
            L    + +     +         C  I  + + K   + + A     ++ +    
Sbjct: 250 -LLNVQNAKAWNAFNL-------SCK-ILLTTRFKQVTDFLSAATTTHISLDHHSM 296

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 17/129 (13%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
            +  +++ G    GK++L     +         + E         D     + ++D  G 
Sbjct: 47  YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPL----SAADYDGSGVTLVDFPGH 101

Query: 163 EQFASMRDLYIKNGQGFV-----VVYSLTNHHTFQDIKQMKEL-----ITRVKGSERVPI 212
            +       Y+K    FV     +V S  +        +   L     IT       + I
Sbjct: 102 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAE--FLVDILSITESSCENGIDI 159

Query: 213 LLVANKLDL 221
           L+  NK +L
Sbjct: 160 LIACNKSEL 168

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCV-LEILDTAG 161
            +  V+ +G    GK+ L V+ ++G + +    +I        +V+      L ++D  G
Sbjct: 6   SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT-DSSAIYKVNNNRGNSLTLIDLPG 63

Query: 162 TEQF-ASMRDLYIKNGQGFV-VVYSLTNHHTFQDIKQ--MKELITRVKGSERVPILLVAN 217
            E     + D +  + +  V VV S       +D+ +   + LI  +       +L+  N
Sbjct: 64  HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123

Query: 218 KLDL 221
           K D+
Sbjct: 124 KQDI 127

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDT 159
           F  +E KV+++G    GK+ +  QF     +    PTI     +EI ++       + D 
Sbjct: 12  FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTI-GSNVEEIVINN--TRFLMWDI 67

Query: 160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKL 219
            G E   S  + Y  N +  +VV   T+       ++    +   +   +  +L+ ANK 
Sbjct: 68  GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQ 127

Query: 220 DL 221
           D+
Sbjct: 128 DV 129

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Length = 165

 Score = 41.3 bits (98), Expect = 9e-05
 Identities = 44/188 (23%), Positives = 71/188 (37%), Gaps = 52/188 (27%)

Query: 102 MREFKVVVLGSGGVGKS----ALT--VQFV---SGCFMEKYDPTIEDFYRKEIEVDKAPC 152
           M+ +++ ++G+  VGKS    ALT    ++    G        T+E   +KE E +    
Sbjct: 1   MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGV-------TVE---KKEGEFEYNGE 50

Query: 153 VLEILDTAGT---------EQFASMRDLYIKNGQ--GFVVVYSLTN-----HHTFQDIKQ 196
             +++D  G          E  A  RD YI N +    V +   T      + T Q    
Sbjct: 51  KFKVVDLPGVYSLTANSIDEIIA--RD-YIINEKPDLVVNIVDATALERNLYLTLQ---- 103

Query: 197 MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVN 256
           + E+           +LL  NK+DLA        +D   L +  G   +  SA  K  + 
Sbjct: 104 LMEM--------GANLLLALNKMDLAKSLGI--EIDVDKLEKILGVKVVPLSAAKKMGIE 153

Query: 257 EMFAEIVR 264
           E+   I  
Sbjct: 154 ELKKAISI 161

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Length = 188

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 62/194 (31%)

Query: 101 TMREFKVVVLGSGGVGKS----ALT--VQFV---SGCFMEKYDPTIEDFYRKEIEVDKAP 151
            M+ +++ ++G+  VGKS    ALT    ++    G        T+E   +KE E +   
Sbjct: 4   HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGV-------TVE---KKEGEFEYNG 53

Query: 152 CVLEILDTAGT---------EQFASMRDLYIKNGQGFVVV------------YSLTNHHT 190
              +++D  G          E  A  RD YI N +  +VV            Y LT    
Sbjct: 54  EKFKVVDLPGVYSLTANSIDEIIA--RD-YIINEKPDLVVNIVDATALERNLY-LTL--- 106

Query: 191 FQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAK 250
                Q+ E+           +LL  NK+DLA        +D   L +  G   +  SA 
Sbjct: 107 -----QLMEM--------GANLLLALNKMDLAKSLGI--EIDVDKLEKILGVKVVPLSAA 151

Query: 251 NKTNVNEMFAEIVR 264
            K  + E+   I  
Sbjct: 152 KKMGIEELKKAISI 165

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
            +++   K  E +P ++V NK+D+   + E            +    +  SA  K   ++
Sbjct: 130 DDVVNLFKEME-IPFVVVVNKIDVLGEKAE---ELKGLYESRYEAKVLLVSALQKKGFDD 185

Query: 258 MFAEIVREMNFNPEKD 273
           +   I   +   P  +
Sbjct: 186 IGKTISEIL---PGDE 198

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* Length = 272

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 10/77 (12%)

Query: 196 QMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
           Q+ E          +P+ +  N +D+   Q +   ++   L+   G P +  SA  +T V
Sbjct: 102 QLIET--------GIPVTIALNMIDVLDGQGK--KINVDKLSYHLGVPVVATSALKQTGV 151

Query: 256 NEMFAEIVREMNFNPEK 272
           +++  +           
Sbjct: 152 DQVVKKAAHTTTSTVGD 168

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A Length = 258

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 196 QMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
           ++ E+           ++L    +D A  ++    +D   L +  G P +  S+     +
Sbjct: 105 EILEM--------EKKVILAMTAIDEA--KKTGMKIDRYELQKHLGIPVVFTSSVTGEGL 154

Query: 256 NEMFAEIVR 264
            E+  +IV 
Sbjct: 155 EELKEKIVE 163

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* Length = 274

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 196 QMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
           Q+ EL         +P ++  N LD+A  Q     ++  AL+   GCP I   +     +
Sbjct: 107 QLLEL--------GIPCIVALNMLDIAEKQNI--RIEIDALSARLGCPVIPLVSTRGRGI 156

Query: 256 NEMFAEIVR 264
             +   I R
Sbjct: 157 EALKLAIDR 165

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} Length = 256

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 196 QMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
           Q+ EL          P+++  N +D+A H+    ++D + L    GC  I   A     +
Sbjct: 105 QLFEL--------GKPVVVALNMMDIAEHRGI--SIDTEKLESLLGCSVIPIQAHKNIGI 154

Query: 256 NEMFAEIVR 264
             +   ++ 
Sbjct: 155 PALQQSLLH 163

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 17/129 (13%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
            +  +++ G    GK++L     +         + E         D     + ++D  G 
Sbjct: 11  YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPL----SAADYDGSGVTLVDFPGH 65

Query: 163 EQFASMRDLYIKNGQGFV-----VVYSLTNHHTFQDIKQMKEL-----ITRVKGSERVPI 212
            +       Y+K    FV     +V S  +        +   L     IT       + I
Sbjct: 66  VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAE--FLVDILSITESSCENGIDI 123

Query: 213 LLVANKLDL 221
           L+  NK +L
Sbjct: 124 LIACNKSEL 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.98
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.98
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.98
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.98
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.97
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.97
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.97
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.97
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.97
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.97
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.97
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.97
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.97
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.97
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.97
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.97
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.97
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.97
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.97
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.97
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.97
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.97
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.97
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.97
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.97
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.97
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.97
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.97
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.97
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.97
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.97
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.97
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.97
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.97
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.97
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.97
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.97
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.97
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.97
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.97
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.97
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.97
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.97
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.97
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.97
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.97
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.97
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.97
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.97
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.97
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.97
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.97
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.97
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.97
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.97
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.97
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.97
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.97
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.97
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.97
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.97
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.96
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.96
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.96
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.96
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.96
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.96
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.96
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.96
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.96
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.96
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.96
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.96
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.96
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.96
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.96
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.95
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.95
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.95
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.95
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.95
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.95
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.95
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.95
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.95
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.95
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.95
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.95
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.9
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.94
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.94
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.94
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.94
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.93
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.93
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.93
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.93
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.93
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.92
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.92
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.92
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.92
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.92
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.92
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.91
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.91
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.91
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.9
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.9
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.9
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.9
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.89
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.89
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.89
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.89
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.89
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.88
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.87
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.87
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.86
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.86
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.86
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.86
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.86
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.86
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.86
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.86
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.85
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.85
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.85
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.85
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.85
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.84
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.84
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.84
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.84
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.83
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.83
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.83
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.83
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.83
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.82
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.82
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.82
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.82
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.82
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.81
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.8
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.8
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.79
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.79
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.79
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.79
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.79
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.79
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.79
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.78
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.77
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.77
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.77
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.77
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.75
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.75
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.74
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.74
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.74
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.74
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.73
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.72
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.72
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.72
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.69
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.68
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.68
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.67
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.67
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.66
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.66
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.65
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.63
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.61
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.61
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.61
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.6
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.58
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.57
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.56
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.56
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.55
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.5
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.49
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.48
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.47
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.47
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.43
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.42
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.4
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.3
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.27
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.26
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.19
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.16
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.1
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.75
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.73
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.68
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.66
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.65
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.62
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.6
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.56
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.51
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.28
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.24
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.15
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.14
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.03
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.97
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.9
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.9
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.82
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.73
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.68
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.5
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.4
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.07
2xxa_A	433	Signal recognition particle protein; protein trans	97.02
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.43
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.41
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.34
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.29
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.29
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.2
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.18
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.08
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.05
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.0
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.95
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.91
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.9
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.88
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.86
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.75
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.71
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.68
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.66
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.65
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	95.62
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.62
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.62
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.56
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.51
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.51
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.5
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.49
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.49
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.47
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.46
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.44
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.43
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	95.4
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.4
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.39
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.38
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.38
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.37
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.36
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.35
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.33
1g6h_A	257	High-affinity branched-chain amino acid transport	95.32
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.32
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.32
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.31
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.31
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.29
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.28
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.28
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.26
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.24
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.24
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.21
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.2
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.18
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.16
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	95.16
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.14
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.13
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.12
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.12
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.11
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.1
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.1
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.1
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.1
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	95.09
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.08
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	95.08
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.08
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.07
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.05
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.05
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.05
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	95.04
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.03
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.03
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.02
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.02
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.01
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.01
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.0
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	94.99
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	94.95
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.94
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.93
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	94.92
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.91
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	94.89
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.84
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	94.83
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.81
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.81
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.81
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	94.74
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	94.74
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	94.73
2vli_A	183	Antibiotic resistance protein; transferase, tunica	94.68
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	94.67
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	94.66
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	94.64
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	94.6
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.59
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.54
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	94.53
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.52
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	94.51
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	94.51
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	94.51
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	94.48
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	94.47
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.45
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	94.44
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	94.44
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	94.44
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.43
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.42
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	94.4
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.4
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.4
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	94.37
1via_A	175	Shikimate kinase; structural genomics, transferase	94.36
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	94.35
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	94.35
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	94.33
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.31
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.3
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	94.3
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.29
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	94.29
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	94.26
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.21
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	94.21
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	94.2
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.18
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.17
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	94.14
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	94.14
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	94.13
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	94.12
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	94.1
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	94.08
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	94.08
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.04
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	94.01
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	94.0
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	93.99
2ewv_A	372	Twitching motility protein PILT; pilus retraction	93.97
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	93.95
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	93.94
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	93.93
3kta_A	182	Chromosome segregation protein SMC; structural mai	93.93
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	93.9
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	93.89
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	93.87
3co5_A	143	Putative two-component system transcriptional RES	93.85
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	93.85
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	93.79
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	93.75
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	93.72
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	93.72
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	93.7
1p9r_A	418	General secretion pathway protein E; bacterial typ	93.7
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	93.6
3fwy_A	314	Light-independent protochlorophyllide reductase I	93.58
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	93.56
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	93.53
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	93.49
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	93.49
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	93.47
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	93.46
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	93.41
2cvh_A	220	DNA repair and recombination protein RADB; filamen	93.41
3bos_A	242	Putative DNA replication factor; P-loop containing	93.38
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	93.37
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	93.36
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	93.32
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	93.31
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	93.29
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	93.24
2og2_A	359	Putative signal recognition particle receptor; nuc	93.23
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	93.14
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	93.14
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	93.09
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	92.98
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	92.9
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	92.85
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	92.85
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	92.84
2chg_A	226	Replication factor C small subunit; DNA-binding pr	92.7
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	92.68
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	92.68
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	92.66
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	92.58
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	92.53
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	92.51
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	92.51
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	92.47
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	92.41
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	92.4
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	92.37
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	92.23
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	92.2
1tue_A	212	Replication protein E1; helicase, replication, E1E	92.13
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	92.1
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	92.04
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	91.99
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	91.97
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	91.97
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	91.96
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	91.95
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	91.93
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	91.91
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	91.84
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	91.82
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	91.81
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	91.8
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	91.76
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	91.76
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	91.73
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	91.71
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	91.69
3uc9_A	233	Increased recombination centers protein 6; rossman	91.68
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	91.66
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	91.62
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	91.57
3end_A	307	Light-independent protochlorophyllide reductase ir	91.52
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	91.49
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	91.47
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	91.44
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	91.43
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	91.37
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	91.34
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	91.34
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	91.34
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	91.14
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	91.12
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	91.07
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	91.05
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	91.02
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	91.0
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	90.9
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	90.75
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	90.7
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	90.64
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	90.6
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	90.56
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	90.53
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	90.47
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	90.46
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	90.44
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	90.4
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	90.36
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	90.34
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	90.32
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	90.3
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	90.27
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	90.1
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	90.08
2qgz_A	308	Helicase loader, putative primosome component; str	90.06
2fna_A	357	Conserved hypothetical protein; structural genomic	90.02
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	89.95
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	89.91

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.8e-35  Score=250.54  Aligned_cols=168  Identities=35%  Similarity=0.541  Sum_probs=143.9

Q ss_pred             CCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCcc
Q psy10504         99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ  177 (286)
Q Consensus        99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d  177 (286)
                      ..|++.+||+|+|++|||||||+++|..+.|...+.+|++ ++....+..++..+.+++|||+|+++|..++..|+++++
T Consensus         8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~   87 (216)
T 4dkx_A            8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA   87 (216)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred             CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence            3467889999999999999999999999999999999987 777788889999999999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      ++++|||++++.+++++..|+..+.... .+++|++||+||+|+. +.+.++.++++.+++.++++|++|||++|.||++
T Consensus        88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~-~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e  165 (216)
T 4dkx_A           88 AAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLA-DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQ  165 (216)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHH
T ss_pred             EEEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchH-hcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHH
Confidence            9999999999999999999999988754 3589999999999997 6678899999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q psy10504        258 MFAEIVREMNF  268 (286)
Q Consensus       258 l~~~i~~~i~~  268 (286)
                      +|+.|++.+..
T Consensus       166 ~F~~i~~~i~~  176 (216)
T 4dkx_A          166 LFRRVAAALPG  176 (216)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=1.8e-31  Score=218.35  Aligned_cols=171  Identities=36%  Similarity=0.613  Sum_probs=152.0

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .+.+||+++|++|+|||||+++|.++.+...+.++++......+..++..+.+.+|||||+++|..++..+++.+|++++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~   83 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   83 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence            46799999999999999999999999999999999888778888899999889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++++.+++.+..|+..+......+++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++|++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A           84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH-MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch-hcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999988876666689999999999997 56778888999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCc
Q psy10504        262 IVREMNFNPEKD  273 (286)
Q Consensus       262 i~~~i~~~~~~~  273 (286)
                      |++.+.+.+...
T Consensus       163 l~~~~~~~~~~~  174 (181)
T 3t5g_A          163 IILEAEKMDGAC  174 (181)
T ss_dssp             HHHHHHTC----
T ss_pred             HHHHHHHhcCCc
Confidence            999998766443

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=2e-31  Score=218.99  Aligned_cols=164  Identities=50%  Similarity=0.894  Sum_probs=148.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +.+||+++|++|||||||+++|.++.+...+.+++.+.....+..++..+.+.+|||||++++..++..+++.+|++++|
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   82 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   82 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence            57999999999999999999999999988899998888888888999999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      +|++++.+++.+..|+..+.......++|+++|+||+|+.  .+.......+.++...+++++++||++|.|++++|++|
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  160 (189)
T 4dsu_A           83 FAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP--SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL  160 (189)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS--SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc--ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999887767789999999999997  45567788889999999999999999999999999999


Q ss_pred             HHHhhc
Q psy10504        263 VREMNF  268 (286)
Q Consensus       263 ~~~i~~  268 (286)
                      .+.+.+
T Consensus       161 ~~~~~~  166 (189)
T 4dsu_A          161 VREIRK  166 (189)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998753

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.1e-32  Score=226.55  Aligned_cols=182  Identities=36%  Similarity=0.633  Sum_probs=146.2

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      +..+.+||+++|++|+|||||+++|.++.+...+.++++.........++..+.+.+|||||++++..++..+++.+|++
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   99 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY   99 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence            34578999999999999999999999999998888888877777777778888899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      ++|||++++.+++.+..|+..+.......++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++|
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  178 (201)
T 3oes_A          100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS-PEREVQAVEGKKLAESWGATFMESSARENQLTQGIF  178 (201)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc-cccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999998876556689999999999997 556677888899999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCcCCCceecCccccC
Q psy10504        260 AEIVREMNFNPEKDNASFCWCSSCSIL  286 (286)
Q Consensus       260 ~~i~~~i~~~~~~~~~~~~~~~~c~~~  286 (286)
                      ++|.+.+.+.....+    ...+|.+|
T Consensus       179 ~~l~~~i~~~~~~~~----~~~~c~l~  201 (201)
T 3oes_A          179 TKVIQEIARVENSYG----QERRCHLM  201 (201)
T ss_dssp             HHHHHHHHHC-----------------
T ss_pred             HHHHHHHHhhhhhhc----cccccccC
Confidence            999999987665543    23457765

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=4.5e-31  Score=216.32  Aligned_cols=168  Identities=45%  Similarity=0.816  Sum_probs=154.6

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ...+.+||+++|++|+|||||+++|.++.+...+.++++.........++..+.+.+|||||++++..++..+++.+|++
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   93 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF   93 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            34578999999999999999999999999998898998877788888999998899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC-CCCcHHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAK-NKTNVNEM  258 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~-~~~gv~~l  258 (286)
                      ++|||++++.+++.+..|+..+.......++|+++|+||+|+. ..+.+...+.+.+++.++++++++||+ +|.|++++
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l  172 (183)
T 3kkq_A           94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM-HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT  172 (183)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS-TTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch-hccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence            9999999999999999999998876666789999999999997 566778888999999999999999999 99999999


Q ss_pred             HHHHHHHhhc
Q psy10504        259 FAEIVREMNF  268 (286)
Q Consensus       259 ~~~i~~~i~~  268 (286)
                      |++|.+.+.+
T Consensus       173 ~~~l~~~i~~  182 (183)
T 3kkq_A          173 FHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.98  E-value=2.9e-31  Score=213.52  Aligned_cols=164  Identities=64%  Similarity=1.053  Sum_probs=148.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +.+||+++|++|+|||||++++.++.+...+.+|++......+..++..+.+.+|||||++++..++..+++.+|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            57999999999999999999999999888888888877777778888888899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc-CCCEEEEeCCCCCcHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      +|++++.+++.+..|+..+......+++|+++|+||+|+. ..+.....+.+.+++.+ +.+++++||++|.|++++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE-DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc-ccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            9999999999999999988886666789999999999997 44556677888888887 799999999999999999999


Q ss_pred             HHHHhh
Q psy10504        262 IVREMN  267 (286)
Q Consensus       262 i~~~i~  267 (286)
                      |.+.+.
T Consensus       161 l~~~i~  166 (167)
T 1c1y_A          161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998774

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.98  E-value=3.3e-31  Score=215.94  Aligned_cols=171  Identities=43%  Similarity=0.743  Sum_probs=153.6

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ++.+.++|+++|++|+|||||+++|.++.+...+.+|++......+..++..+.+.+|||||++++..++..+++.+|++
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   84 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   84 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence            34578999999999999999999999999988899998877777888899888899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      ++|+|++++.+++.+..|+..+.......++|+++|+||+|+. ..+.+...+...++...+++++++||++|.|++++|
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  163 (181)
T 2fn4_A           85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE-SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  163 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-cccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            9999999999999999999988666666689999999999997 445667788888888899999999999999999999


Q ss_pred             HHHHHHhhcCCC
Q psy10504        260 AEIVREMNFNPE  271 (286)
Q Consensus       260 ~~i~~~i~~~~~  271 (286)
                      ++|.+.+.+...
T Consensus       164 ~~l~~~~~~~~~  175 (181)
T 2fn4_A          164 EQLVRAVRKYQE  175 (181)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhc
Confidence            999999876443

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.98  E-value=3.7e-31  Score=212.53  Aligned_cols=165  Identities=74%  Similarity=1.191  Sum_probs=150.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +.+||+++|++|+|||||++++.++.+...+.+++++.....+.+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            57999999999999999999999999888888888877788888999988899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      +|++++.+++.+..|+..+.......++|+++|+||+|+. ..+.....+.+.+++..+++++++||++|.|++++|++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE-SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc-ccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            9999999999999999988876666689999999999997 455667778888888899999999999999999999999


Q ss_pred             HHHhhc
Q psy10504        263 VREMNF  268 (286)
Q Consensus       263 ~~~i~~  268 (286)
                      .+.+.+
T Consensus       161 ~~~~~~  166 (167)
T 1kao_A          161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            998754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.98  E-value=6e-31  Score=211.49  Aligned_cols=166  Identities=43%  Similarity=0.763  Sum_probs=147.9

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ++.+||+++|++|+|||||++++.++.+...+.++++......+..++..+.+.+|||||++++..++..+++.+|++++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            35799999999999999999999999988888888887777778889988889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |+|++++.+++.+..|+..+.......++|+++|+||+|+. ..+.....+...+++..+++++++||++|.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc-ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            99999999999999999998887666689999999999997 44556778888888889999999999999999999999


Q ss_pred             HHHHhhc
Q psy10504        262 IVREMNF  268 (286)
Q Consensus       262 i~~~i~~  268 (286)
                      |.+.+.+
T Consensus       161 l~~~i~~  167 (168)
T 1u8z_A          161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.97  E-value=6.2e-31  Score=219.27  Aligned_cols=169  Identities=42%  Similarity=0.749  Sum_probs=151.8

Q ss_pred             CCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504         99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG  178 (286)
Q Consensus        99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~  178 (286)
                      ..+++.++|+++|++|||||||+++|.++.+...+.+++++.....+.+++..+.+.+|||||++++..++..+++.+|+
T Consensus         9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A            9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            34567899999999999999999999999998888899888777888889988889999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504        179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l  258 (286)
                      +++|||++++.+++.+..|+..+.......++|+++|+||+|+. ..+.+...+...++...+++++++||++|.|++++
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  167 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV  167 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc-ccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999998887655689999999999997 44556778888888889999999999999999999


Q ss_pred             HHHHHHHhhc
Q psy10504        259 FAEIVREMNF  268 (286)
Q Consensus       259 ~~~i~~~i~~  268 (286)
                      |++|++.+.+
T Consensus       168 ~~~l~~~i~~  177 (206)
T 2bov_A          168 FFDLMREIRA  177 (206)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.97  E-value=1.1e-30  Score=215.26  Aligned_cols=167  Identities=23%  Similarity=0.394  Sum_probs=145.2

Q ss_pred             CCCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCcc
Q psy10504         98 NSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ  177 (286)
Q Consensus        98 ~~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d  177 (286)
                      ....++.+||+++|++|||||||+++++++.+...+.+|.. .....+.+++..+.+.+|||+|++++.     +++.+|
T Consensus        14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~   87 (184)
T 3ihw_A           14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD   87 (184)
T ss_dssp             --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred             CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence            34566889999999999999999999999998888877754 445788899999999999999998877     778899


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC-CCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcH
Q psy10504        178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA-SHQREVPTLDGQALAQSWG-CPFIEASAKNKTNV  255 (286)
Q Consensus       178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv  255 (286)
                      ++++|||++++.+++.+..|+..+......+++|+++|+||+|+. ...+.+...+.+.++...+ +++++|||++|.|+
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv  167 (184)
T 3ihw_A           88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV  167 (184)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence            999999999999999999999998876544689999999999995 2456678888999999987 89999999999999


Q ss_pred             HHHHHHHHHHhhcCC
Q psy10504        256 NEMFAEIVREMNFNP  270 (286)
Q Consensus       256 ~~l~~~i~~~i~~~~  270 (286)
                      +++|+++++.+.+..
T Consensus       168 ~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          168 ERVFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999886543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.97  E-value=3.1e-30  Score=213.68  Aligned_cols=170  Identities=28%  Similarity=0.484  Sum_probs=151.5

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ...+.+||+++|++|+|||||++++.++.+...+.+|++......+..++..+.+++|||||+++|..++..+++++|++
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   98 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV   98 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence            34578999999999999999999999999988899999888888888999999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCC-CCCCCHHHHHHHHHhcCCC-EEEEeCCCCCcHH
Q psy10504        180 VVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASH-QREVPTLDGQALAQSWGCP-FIEASAKNKTNVN  256 (286)
Q Consensus       180 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~gv~  256 (286)
                      ++|||++++.+++++ ..|+..+...  .+++|+++|+||+|+.++ .+.+...+.+.+++..+++ ++++||++|.|++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  176 (194)
T 3reg_A           99 LLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN  176 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence            999999999999997 6677777754  357999999999999743 4667888899999999988 9999999999999


Q ss_pred             HHHHHHHHHhhcCCC
Q psy10504        257 EMFAEIVREMNFNPE  271 (286)
Q Consensus       257 ~l~~~i~~~i~~~~~  271 (286)
                      ++|++|.+.+.+.+.
T Consensus       177 ~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          177 EVFEKSVDCIFSNKP  191 (194)
T ss_dssp             HHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHHhcCC
Confidence            999999999876553

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.97  E-value=1.8e-30  Score=210.71  Aligned_cols=166  Identities=33%  Similarity=0.556  Sum_probs=133.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCccc--chhhhhhcccCccEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ--FASMRDLYIKNGQGFV  180 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~--~~~~~~~~~~~~d~vi  180 (286)
                      +.+||+++|++|+|||||+++|.++.+...+.....+.....+.+++..+.+.+|||||++.  +..++..+++.+|+++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i   82 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV   82 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence            56999999999999999999999987765555444466677788899888899999999988  6677888999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|||++++.+++.+..|+..+......+++|+++|+||+|+. ..+.+...+.+.++...+++++++||++|.|++++|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  161 (175)
T 2nzj_A           83 IVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA-RCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE  161 (175)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT-TTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc-cccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence            999999999999999998888775445589999999999997 4456677778888888899999999999999999999


Q ss_pred             HHHHHhhcC
Q psy10504        261 EIVREMNFN  269 (286)
Q Consensus       261 ~i~~~i~~~  269 (286)
                      +|.+.+...
T Consensus       162 ~l~~~~~~~  170 (175)
T 2nzj_A          162 GVVRQLRLR  170 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.97  E-value=4.5e-30  Score=209.61  Aligned_cols=170  Identities=34%  Similarity=0.509  Sum_probs=146.2

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      +.+.+||+++|++|+|||||++++.++.+...+.++.+ ++....+.+++..+.+.+|||||++++..++..+++.+|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            45679999999999999999999999888777666655 45566777888888899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      ++|+|++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++|
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  166 (181)
T 2efe_B           89 IIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLL-DARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF  166 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCccc-ccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence            99999999999999999998888753 4689999999999997 455667788888998999999999999999999999


Q ss_pred             HHHHHHhhcCCCC
Q psy10504        260 AEIVREMNFNPEK  272 (286)
Q Consensus       260 ~~i~~~i~~~~~~  272 (286)
                      ++|.+.+.+.+..
T Consensus       167 ~~l~~~~~~~~~~  179 (181)
T 2efe_B          167 YEIARRLPRVQPT  179 (181)
T ss_dssp             HHHHHTCC-----
T ss_pred             HHHHHHHHhcCCC
Confidence            9999998776543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.97  E-value=1.1e-30  Score=213.98  Aligned_cols=169  Identities=42%  Similarity=0.749  Sum_probs=151.5

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ..++.+||+++|++|+|||||+++|.++.+...+.+++.......+..++..+.+.+|||||++++..++..+++.+|++
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            34578999999999999999999999999888888888877777888899888899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      ++|||++++.+++.+..|+..+.......++|+++|+||+|+. ..+.....+...+++..+++++++||+++.|++++|
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  172 (187)
T 2a9k_A           94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  172 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence            9999999999999999999998887666689999999999997 445567788888899999999999999999999999


Q ss_pred             HHHHHHhhcC
Q psy10504        260 AEIVREMNFN  269 (286)
Q Consensus       260 ~~i~~~i~~~  269 (286)
                      ++|.+.+.+.
T Consensus       173 ~~l~~~i~~~  182 (187)
T 2a9k_A          173 FDLMREIRAR  182 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.97  E-value=1.2e-30  Score=220.20  Aligned_cols=176  Identities=21%  Similarity=0.361  Sum_probs=147.9

Q ss_pred             CCCCCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccC
Q psy10504         96 IDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKN  175 (286)
Q Consensus        96 ~~~~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~  175 (286)
                      ......+..+||+++|++|||||||+++|.++.+...+.+|++......+.+++..+.+.+|||||+++|..++..+++.
T Consensus        19 ~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   98 (214)
T 3q3j_B           19 RAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSD   98 (214)
T ss_dssp             --------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred             cCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCC
Confidence            33445567899999999999999999999999999999999988777778888888889999999999999999999999


Q ss_pred             ccEEEEEEECCCcccHHH-HHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcCC-
Q psy10504        176 GQGFVVVYSLTNHHTFQD-IKQMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWGC-  242 (286)
Q Consensus       176 ~d~vilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-  242 (286)
                      +|++++|||++++.+++. +..|+..+...  .+++|+++|+||+|+.++           .+.+...+...+++..++ 
T Consensus        99 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  176 (214)
T 3q3j_B           99 SDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAE  176 (214)
T ss_dssp             CSEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCS
T ss_pred             CeEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCC
Confidence            999999999999999999 68898888875  358999999999999732           366888899999999998 


Q ss_pred             CEEEEeCCCCCc-HHHHHHHHHHHhhcCCCCc
Q psy10504        243 PFIEASAKNKTN-VNEMFAEIVREMNFNPEKD  273 (286)
Q Consensus       243 ~~~~vSa~~~~g-v~~l~~~i~~~i~~~~~~~  273 (286)
                      ++++|||++|.| ++++|+++++.+.......
T Consensus       177 ~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~~  208 (214)
T 3q3j_B          177 IYLEGSAFTSEKSIHSIFRTASMLCLNKPSPL  208 (214)
T ss_dssp             EEEECCTTTCHHHHHHHHHHHHHHHHC-----
T ss_pred             EEEEeccCCCcccHHHHHHHHHHHHhccCcCC
Confidence            999999999998 9999999999987665443

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.97  E-value=5.8e-31  Score=221.09  Aligned_cols=171  Identities=28%  Similarity=0.514  Sum_probs=145.3

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .+.+||+++|++|+|||||+++|.++.+...+.+|+++.....+.+++..+.+.+|||||+++|..++..+++.+|++++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il   86 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   86 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence            36799999999999999999999999998888899888877788888888889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC-------CCCHHHHHHHHHhcCC-CEEEEeCCCC
Q psy10504        182 VYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQR-------EVPTLDGQALAQSWGC-PFIEASAKNK  252 (286)
Q Consensus       182 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~-~~~~vSa~~~  252 (286)
                      |||++++.+++++. .|+..+....  +++|+++|+||+|+.+...       .+...+.+.++...+. +++++||++|
T Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  164 (212)
T 2j0v_A           87 AFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ  164 (212)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence            99999999999987 7888887643  4899999999999863221       2467778888888885 9999999999


Q ss_pred             CcHHHHHHHHHHHhhcCCCCcC
Q psy10504        253 TNVNEMFAEIVREMNFNPEKDN  274 (286)
Q Consensus       253 ~gv~~l~~~i~~~i~~~~~~~~  274 (286)
                      .|++++|++|++.+.+.+...+
T Consensus       165 ~gi~~l~~~l~~~~~~~~~~~~  186 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQPPRRKE  186 (212)
T ss_dssp             TTHHHHHHHHHHHHHCC-----
T ss_pred             CCHHHHHHHHHHHHhhhhhhcc
Confidence            9999999999999877665444

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.97  E-value=1.1e-30  Score=215.59  Aligned_cols=167  Identities=37%  Similarity=0.607  Sum_probs=144.0

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ...+.+||+++|++|||||||+++|.++.+...+.+|+++.....+.+++..+.+++|||||++++..+ ..+++.+|++
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            345789999999999999999999999999888999988777777888999999999999999998875 5789999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhC--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC-CCCCcHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKG--SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASA-KNKTNVN  256 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa-~~~~gv~  256 (286)
                      ++|||++++.+++.+..|+..+.....  .+++|+++|+||+|+. ..+.+...+.+.+++..++++++||| ++|.|++
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~  174 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA-QYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ  174 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh-hcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence            999999999999999999988876531  2489999999999997 45667788889999999999999999 8999999


Q ss_pred             HHHHHHHHHhhc
Q psy10504        257 EMFAEIVREMNF  268 (286)
Q Consensus       257 ~l~~~i~~~i~~  268 (286)
                      ++|++|++.+.+
T Consensus       175 ~lf~~l~~~i~~  186 (187)
T 3c5c_A          175 HVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999998754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.97  E-value=6.8e-30  Score=211.35  Aligned_cols=170  Identities=38%  Similarity=0.591  Sum_probs=149.5

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ...+||+++|++|+|||||+++|.++.+...+.++++ +.....+..++..+.+.+|||||++++..++..+++.+|+++
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            4679999999999999999999999988777766665 556677888998888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|||++++.+++.+..|+..+.... ..++|+++|+||+|+. ..+.....+.+.++...+++++++||++|.|++++|+
T Consensus        94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  171 (196)
T 3tkl_A           94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLT-TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM  171 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccc-cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999887753 4589999999999997 5666777888999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCc
Q psy10504        261 EIVREMNFNPEKD  273 (286)
Q Consensus       261 ~i~~~i~~~~~~~  273 (286)
                      +|.+.+.+.....
T Consensus       172 ~l~~~i~~~~~~~  184 (196)
T 3tkl_A          172 TMAAEIKKRMGPG  184 (196)
T ss_dssp             HHHHHHHHHC---
T ss_pred             HHHHHHHHHhccc
Confidence            9999987654433

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.97  E-value=3.8e-30  Score=210.79  Aligned_cols=169  Identities=28%  Similarity=0.497  Sum_probs=149.5

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ++.+||+++|++|+|||||+++|.++.+...+.+++.+.....+..++..+.+++|||||++++..++..+++.+|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            46799999999999999999999999998888888888878888889999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcCC-CEEEEe
Q psy10504        182 VYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWGC-PFIEAS  248 (286)
Q Consensus       182 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~vS  248 (286)
                      |||++++.+++++. .|+..+....  +++|+++|+||+|+.+.           .+.+...+...+++..+. +++++|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            99999999999987 6877777642  48999999999999743           245677788888888886 999999


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCCCC
Q psy10504        249 AKNKTNVNEMFAEIVREMNFNPEK  272 (286)
Q Consensus       249 a~~~~gv~~l~~~i~~~i~~~~~~  272 (286)
                      |++|.|++++|++|.+.+.+.+..
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~~~~  184 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLCPPPV  184 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCCCC-
T ss_pred             CCCccCHHHHHHHHHHHHhccccc
Confidence            999999999999999999776543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.97  E-value=1.9e-30  Score=208.86  Aligned_cols=163  Identities=32%  Similarity=0.488  Sum_probs=123.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      .+||+++|++|+|||||++++.+..+.. ..++.+......+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            5799999999999999999998765442 334444555677788999999999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |++++.+++.+..|+..+......+++|+++|+||+|+. ..+.+...+.+.++...+++++++||++|.|++++|++|.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC-SSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc-cccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            999999999999999998876556789999999999997 5567788888899999999999999999999999999999


Q ss_pred             HHhhc
Q psy10504        264 REMNF  268 (286)
Q Consensus       264 ~~i~~  268 (286)
                      +.+.+
T Consensus       160 ~~~~~  164 (166)
T 3q72_A          160 RQIRL  164 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98865

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.97  E-value=1e-29  Score=203.68  Aligned_cols=164  Identities=49%  Similarity=0.889  Sum_probs=148.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +.+||+++|++|+|||||++++.++.+...+.+++++.....+..++..+.+.+|||||++++..++..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            56899999999999999999999998888888888877778888899888899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      +|++++.+++.+..|+..+.......++|+++|+||+|+.+  +.....+.+.+++..+++++++||++|.|+++++++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh--cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999888776556899999999999973  4566778888889999999999999999999999999


Q ss_pred             HHHhhc
Q psy10504        263 VREMNF  268 (286)
Q Consensus       263 ~~~i~~  268 (286)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T 2ce2_X          160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.97  E-value=7.9e-30  Score=210.27  Aligned_cols=169  Identities=49%  Similarity=0.865  Sum_probs=140.9

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ..++.+||+++|++|||||||+++|.++.+...+.+++++.....+..++..+.+.+|||||++++..++..+++.+|++
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   96 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF   96 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence            44678999999999999999999999998888888888877778888899888899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      ++|+|++++.+++++..|+..+.......++|+++|+||+|+.+  +.....+.+.+++..+++++++||++|.|++++|
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  174 (190)
T 3con_A           97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF  174 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc--ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999888766556899999999999973  5566788888999999999999999999999999


Q ss_pred             HHHHHHhhcCC
Q psy10504        260 AEIVREMNFNP  270 (286)
Q Consensus       260 ~~i~~~i~~~~  270 (286)
                      ++|.+.+.+..
T Consensus       175 ~~l~~~~~~~~  185 (190)
T 3con_A          175 YTLVREIRQYR  185 (190)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
Confidence            99999887543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.97  E-value=5.7e-30  Score=213.04  Aligned_cols=170  Identities=31%  Similarity=0.459  Sum_probs=143.4

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCC-ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh-hhhhcccCccE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFME-KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS-MRDLYIKNGQG  178 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~-~~~~~~~~~d~  178 (286)
                      ....+||+++|++|||||||+++|.+..... ..+.++.+.....+.+++..+.+.+|||+|++.+.. ++..+++.+|+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~   99 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA   99 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence            3467999999999999999999997644322 233344566777788899999999999999998775 78889999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504        179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l  258 (286)
                      +++|||++++.+++.+..|+..+.......++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++
T Consensus       100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l  178 (195)
T 3cbq_A          100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-RSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL  178 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc-ccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence            99999999999999999999988875544589999999999997 45667778888899999999999999999999999


Q ss_pred             HHHHHHHhhcCCC
Q psy10504        259 FAEIVREMNFNPE  271 (286)
Q Consensus       259 ~~~i~~~i~~~~~  271 (286)
                      |++|++.+.+...
T Consensus       179 f~~l~~~i~~~~~  191 (195)
T 3cbq_A          179 FEGAVRQIRLRRG  191 (195)
T ss_dssp             HHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999876543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.97  E-value=4.5e-30  Score=212.33  Aligned_cols=169  Identities=34%  Similarity=0.510  Sum_probs=144.9

Q ss_pred             CCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCcc
Q psy10504         99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ  177 (286)
Q Consensus        99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d  177 (286)
                      ....+.+||+++|++|+|||||+++|.++.+...+.++.+ ++....+.+++..+.+++|||||++++..++..+++.+|
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   95 (191)
T 2a5j_A           16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA   95 (191)
T ss_dssp             CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence            3445789999999999999999999999888776666654 555667888888888999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      ++++|+|++++.+++.+..|+..+... ..+++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|+++
T Consensus        96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  173 (191)
T 2a5j_A           96 GALLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLE-SRRDVKREEGEAFAREHGLIFMETSAKTACNVEE  173 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccC-CccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999999999888774 34589999999999997 4456677888889999999999999999999999


Q ss_pred             HHHHHHHHhhcC
Q psy10504        258 MFAEIVREMNFN  269 (286)
Q Consensus       258 l~~~i~~~i~~~  269 (286)
                      +|++|++.+.+.
T Consensus       174 l~~~l~~~i~~~  185 (191)
T 2a5j_A          174 AFINTAKEIYRK  185 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=6.4e-30  Score=211.63  Aligned_cols=167  Identities=28%  Similarity=0.493  Sum_probs=148.3

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      .+.+.+||+++|++|+|||||+++|.++.+...+.+|+++.....+.+++..+.+.+|||||+++|..++..+++.+|++
T Consensus        14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            34477999999999999999999999999988888998887777888888888899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcCC-CEEE
Q psy10504        180 VVVYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWGC-PFIE  246 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~  246 (286)
                      ++|||++++.+++.+. .|+..+...  .+++|+++|+||+|+.+.           .+.+...+...+++..+. ++++
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  171 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE  171 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence            9999999999999997 688887764  348999999999999743           245777888889988887 9999


Q ss_pred             EeCCCCCcHHHHHHHHHHHhhc
Q psy10504        247 ASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       247 vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      |||++|.|++++|++|.+.+..
T Consensus       172 ~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          172 CSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHC
T ss_pred             eeCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999998753

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.97  E-value=4.9e-30  Score=206.71  Aligned_cols=165  Identities=36%  Similarity=0.562  Sum_probs=144.7

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      .+.+||+++|++|+|||||+++|.++.+...+.++.+ +.....+..++..+.+.+|||||++++..++..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            4679999999999999999999999888777766665 344566778888888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|+|++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.....+...++...+++++++||++|.|++++|+
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  161 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLA-NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM  161 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCc-cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999999988887753 4589999999999997 4455667788888888999999999999999999999


Q ss_pred             HHHHHhhc
Q psy10504        261 EIVREMNF  268 (286)
Q Consensus       261 ~i~~~i~~  268 (286)
                      +|.+.+.+
T Consensus       162 ~i~~~~~~  169 (170)
T 1r2q_A          162 AIAKKLPK  169 (170)
T ss_dssp             HHHHTSCC
T ss_pred             HHHHHHhh
Confidence            99988754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.97  E-value=4.2e-30  Score=214.68  Aligned_cols=169  Identities=31%  Similarity=0.512  Sum_probs=142.7

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ..+.+||+++|++|+|||||+++|.++.+...+.+|++ ++....+.+++..+.+.+|||||+++|..++..+++.+|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            34679999999999999999999999988777777765 55567788888888899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCCCcHHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEM  258 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~l  258 (286)
                      ++|||++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.+...+.+.+++..++ ++++|||++|.|++++
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  183 (201)
T 2hup_A          106 ILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLS-ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEA  183 (201)
T ss_dssp             EEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccc-cccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999998887753 4589999999999997 4456677888889999998 9999999999999999


Q ss_pred             HHHHHHHhhcCCC
Q psy10504        259 FAEIVREMNFNPE  271 (286)
Q Consensus       259 ~~~i~~~i~~~~~  271 (286)
                      |++|++.+.+...
T Consensus       184 ~~~l~~~i~~~~~  196 (201)
T 2hup_A          184 FLRVATELIMRHG  196 (201)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999876443

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=5.1e-30  Score=214.54  Aligned_cols=168  Identities=30%  Similarity=0.510  Sum_probs=148.3

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ..+.+||+++|++|+|||||+++|.++.+...+.+|++ ++....+.+++..+.+++|||||+++|..++..+++.+|++
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  102 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL  102 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            34679999999999999999999999988877777765 55567788899888899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      ++|||++++.+++.+..|+..+.... ..++|+++|+||+|+. ..+.+...+.+.+++..++++++|||++|.|++++|
T Consensus       103 i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  180 (201)
T 2ew1_A          103 ILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLA-ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF  180 (201)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCc-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999887753 4578999999999997 445667778888888899999999999999999999


Q ss_pred             HHHHHHhhcCC
Q psy10504        260 AEIVREMNFNP  270 (286)
Q Consensus       260 ~~i~~~i~~~~  270 (286)
                      ++|.+.+.+..
T Consensus       181 ~~l~~~i~~~~  191 (201)
T 2ew1_A          181 LDLACRLISEA  191 (201)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999886543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=5.1e-30  Score=212.58  Aligned_cols=165  Identities=44%  Similarity=0.804  Sum_probs=146.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      ..++|+++|++|||||||+++|.++.+...+.++.+......+..++..+.+.+|||||++++..++..+++.+|++++|
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   86 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILV   86 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEE
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEE
Confidence            56999999999999999999999998887788887766667777888888899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      ||++++.+++.+..|+..+..... .+++|+++|+||+|+.+  +.....+...++..++++++++||++|.|++++|++
T Consensus        87 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (199)
T 2gf0_A           87 FSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ--REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE  164 (199)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS--CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc--cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence            999999999999988887776543 35789999999999973  556677788888889999999999999999999999


Q ss_pred             HHHHhhcC
Q psy10504        262 IVREMNFN  269 (286)
Q Consensus       262 i~~~i~~~  269 (286)
                      |.+.+.+.
T Consensus       165 l~~~~~~~  172 (199)
T 2gf0_A          165 LLTLETRR  172 (199)
T ss_dssp             HHHHCSSS
T ss_pred             HHHHHhhh
Confidence            99987654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.97  E-value=4.6e-30  Score=213.69  Aligned_cols=169  Identities=28%  Similarity=0.462  Sum_probs=140.7

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ...+.+||+++|++|+|||||+++|.++.+...+.+|+++.....+..++..+.+.+|||||+++|..++..+++++|++
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF   95 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence            34578999999999999999999999999888888998888778888899888899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcCC-CEEE
Q psy10504        180 VVVYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWGC-PFIE  246 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~  246 (286)
                      ++|||++++.+++++. .|+..+....  +++|+++|+||+|+.+.           .+.+...+...+++..+. ++++
T Consensus        96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            9999999999999997 6888877643  48999999999999742           356677888888888886 8999


Q ss_pred             EeCCCCCcHHHHHHHHHHHhhcCC
Q psy10504        247 ASAKNKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       247 vSa~~~~gv~~l~~~i~~~i~~~~  270 (286)
                      |||++|.|++++|++|++.+.+.+
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~~~  197 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQYS  197 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHHHHHHhccc
Confidence            999999999999999999886544

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=7.6e-30  Score=205.61  Aligned_cols=165  Identities=35%  Similarity=0.565  Sum_probs=144.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      +.+||+++|++|+|||||++++.++.+...+.++.+ +.....+.+++..+.+.+|||||++++..++..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            568999999999999999999999988777766665 4445667788888889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ--REVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      |+|++++.+++++..|+..+.... .+++|+++|+||+|+.+..  +.+...+.+.+++..+++++++||++|.|++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF  160 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999998887753 4589999999999997332  5677778888888899999999999999999999


Q ss_pred             HHHHHHhhc
Q psy10504        260 AEIVREMNF  268 (286)
Q Consensus       260 ~~i~~~i~~  268 (286)
                      ++|.+.+.+
T Consensus       161 ~~l~~~i~~  169 (170)
T 1ek0_A          161 LGIGEKIPL  169 (170)
T ss_dssp             HHHHTTSCC
T ss_pred             HHHHHHHhh
Confidence            999987754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.97  E-value=1.2e-29  Score=206.30  Aligned_cols=165  Identities=33%  Similarity=0.488  Sum_probs=145.8

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      .+.+||+++|++|+|||||+++|.++.+...+.++.+ +.....+..++..+.+.+|||||++++..++..+++.+|+++
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence            4679999999999999999999999988877777765 455667778888888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|+|++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.....+.+.+++..+++++++||++|.|++++|+
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  170 (179)
T 1z0f_A           93 MVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLE-AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  170 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999998887753 3589999999999997 4455677788889999999999999999999999999


Q ss_pred             HHHHHhhc
Q psy10504        261 EIVREMNF  268 (286)
Q Consensus       261 ~i~~~i~~  268 (286)
                      +|++.+.+
T Consensus       171 ~l~~~i~~  178 (179)
T 1z0f_A          171 EAAKKIYQ  178 (179)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHhh
Confidence            99998754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.97  E-value=7.9e-30  Score=210.37  Aligned_cols=168  Identities=33%  Similarity=0.532  Sum_probs=143.7

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccch-hhhhhcccCcc
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFA-SMRDLYIKNGQ  177 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~-~~~~~~~~~~d  177 (286)
                      ...+.+||+++|++|+|||||+++|.++.+...+.++.+ ++....+.+++..+.+.+|||||++++. .++..+++.+|
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            445789999999999999999999999888777766665 5566778888888889999999999998 88999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC---Cc
Q psy10504        178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK---TN  254 (286)
Q Consensus       178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~---~g  254 (286)
                      ++++|+|++++.+++.+..|+..+.......++|+++|+||+|+. ..+.+...+.+.++...+++++++||+++   .|
T Consensus        96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~  174 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR-SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH  174 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC
Confidence            999999999999999999999998886556689999999999997 44566778888899999999999999999   99


Q ss_pred             HHHHHHHHHHHhhc
Q psy10504        255 VNEMFAEIVREMNF  268 (286)
Q Consensus       255 v~~l~~~i~~~i~~  268 (286)
                      ++++|++|++.+.+
T Consensus       175 i~~l~~~l~~~i~~  188 (189)
T 1z06_A          175 VEAIFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.97  E-value=5.6e-30  Score=208.50  Aligned_cols=169  Identities=33%  Similarity=0.482  Sum_probs=145.3

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECC-eEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDK-APCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      .+.+||+++|++|+|||||+++|.++.+...+.+|++ ++....+.+++ ..+.+++|||||++++..++..+++.+|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            4679999999999999999999999888777667764 66677788876 567899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhC-CCCCc-EEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVP-ILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      ++|+|++++.+++.+..|+..+..... ..+.| +++|+||+|+. ..+.+..++.+.+++..+++++++||++|.|+++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE-HMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc-cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            999999999999999999888876421 12445 89999999997 4455677788888888999999999999999999


Q ss_pred             HHHHHHHHhhcCCC
Q psy10504        258 MFAEIVREMNFNPE  271 (286)
Q Consensus       258 l~~~i~~~i~~~~~  271 (286)
                      +|++|.+.+.+.+.
T Consensus       163 l~~~l~~~~~~~~~  176 (178)
T 2hxs_A          163 CFQKVAAEILGIKL  176 (178)
T ss_dssp             HHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999999877653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.97  E-value=7.9e-30  Score=205.88  Aligned_cols=165  Identities=31%  Similarity=0.474  Sum_probs=133.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCcc-CCCccceEEEEEEECCeEEEEEEEeCCCcccchh-hhhhcccCccEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKY-DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS-MRDLYIKNGQGFVV  181 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~-~~~~~~~~~d~vil  181 (286)
                      .+||+++|++|+|||||+++|.+..+...+ .+++.+.....+..++..+.+.+|||||++++.. ++..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            479999999999999999999976554433 2333566777788999999999999999998876 77888999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++++.+++.+..|+..+......+++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  160 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG  160 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh-hcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence            99999999999999999999886655689999999999997 55667888899999999999999999999999999999


Q ss_pred             HHHHhhcC
Q psy10504        262 IVREMNFN  269 (286)
Q Consensus       262 i~~~i~~~  269 (286)
                      +.+.+...
T Consensus       161 l~~~i~~~  168 (169)
T 3q85_A          161 AVRQIRLR  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99988653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.97  E-value=1.4e-29  Score=208.87  Aligned_cols=166  Identities=30%  Similarity=0.540  Sum_probs=145.7

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ....+||+++|++|+|||||+++|.++.+...+.++.+ ++....+..++..+.+.+|||||++++..++..+++.+|++
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            34679999999999999999999999988777666665 44456677788888899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      ++|||++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++|
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  176 (189)
T 2gf9_A           99 LLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLE-DERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF  176 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccc-cccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999998887743 4589999999999997 445667778888999999999999999999999999


Q ss_pred             HHHHHHhhc
Q psy10504        260 AEIVREMNF  268 (286)
Q Consensus       260 ~~i~~~i~~  268 (286)
                      ++|.+.+.+
T Consensus       177 ~~l~~~i~~  185 (189)
T 2gf9_A          177 ERLVDVICE  185 (189)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998865

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.5e-29  Score=205.02  Aligned_cols=168  Identities=35%  Similarity=0.614  Sum_probs=137.1

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCC-CccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG  178 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~  178 (286)
                      ..+.+||+++|++|+|||||+++|.++.+. ..+.++++ ++....+..++..+.+.+|||||++++..++..+++.+|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            357899999999999999999999998874 34555554 4444556788888889999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504        179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l  258 (286)
                      +++|+|++++.+++.+..|+..+..... .++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  164 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSA-HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA  164 (180)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTT-SCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccC-cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            9999999999999999999988877543 589999999999998 45566777888888889999999999999999999


Q ss_pred             HHHHHHHhhcCC
Q psy10504        259 FAEIVREMNFNP  270 (286)
Q Consensus       259 ~~~i~~~i~~~~  270 (286)
                      |++|.+.+.+..
T Consensus       165 ~~~l~~~~~~~~  176 (180)
T 2g6b_A          165 FTAIAKELKRRS  176 (180)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999987644

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=6.8e-30  Score=215.50  Aligned_cols=167  Identities=32%  Similarity=0.539  Sum_probs=139.7

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCccceEEEEEEECCeEEEEEEEeCCCccc-chhhhhhcccCcc
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ-FASMRDLYIKNGQ  177 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~-~~~~~~~~~~~~d  177 (286)
                      ....+||+++|++|||||||+++|.+.  .+...++++..++....+.+++..+.+.+|||+|++. +..++..+++.++
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~  113 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD  113 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence            345799999999999999999999963  3455555555577777888999998899999999887 5667788899999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      ++++|||++++.+++.+..|+..+......+++|+++|+||+|+. ..+.+...+.+.++...++++++|||++|.|+++
T Consensus       114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~-~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e  192 (211)
T 2g3y_A          114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  192 (211)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh-cCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999999998877654334589999999999997 4456677777788888899999999999999999


Q ss_pred             HHHHHHHHhhc
Q psy10504        258 MFAEIVREMNF  268 (286)
Q Consensus       258 l~~~i~~~i~~  268 (286)
                      +|++|++.+..
T Consensus       193 lf~~l~~~i~~  203 (211)
T 2g3y_A          193 LFEGIVRQVRL  203 (211)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998854

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.97  E-value=1e-29  Score=205.28  Aligned_cols=164  Identities=29%  Similarity=0.547  Sum_probs=137.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      +.+||+++|++|+|||||++++.++.+...+.++.+ ++....+.+++..+.+.+|||||++++..++..+++.+|++++
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   84 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   84 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence            679999999999999999999999888777767665 4445677788888889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |+|++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++|++
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A           85 VYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLE-KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccc-cccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            999999999999999988877643 2478999999999997 44566777888899999999999999999999999999


Q ss_pred             HHHHhhc
Q psy10504        262 IVREMNF  268 (286)
Q Consensus       262 i~~~i~~  268 (286)
                      |.+.+.+
T Consensus       163 l~~~~~~  169 (170)
T 1z08_A          163 LCKRMIE  169 (170)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9998764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.97  E-value=8.7e-30  Score=207.16  Aligned_cols=167  Identities=34%  Similarity=0.545  Sum_probs=145.9

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG  178 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~  178 (286)
                      .+++.+||+++|++|+|||||++++.++.+...+.++.+ ++....+.+++..+.+.+|||||++++..++..+++.+|+
T Consensus        10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   89 (179)
T 2y8e_A           10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV   89 (179)
T ss_dssp             --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence            356789999999999999999999999888777777665 5667778889988889999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504        179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l  258 (286)
                      +++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+. ..+.....+.+.++...+++++++||++|.|++++
T Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  167 (179)
T 2y8e_A           90 AVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLS-DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL  167 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGG-GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCccc-ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            999999999999999999998887654 3579999999999997 44556777888888889999999999999999999


Q ss_pred             HHHHHHHhhc
Q psy10504        259 FAEIVREMNF  268 (286)
Q Consensus       259 ~~~i~~~i~~  268 (286)
                      |++|.+.+.+
T Consensus       168 ~~~l~~~~~~  177 (179)
T 2y8e_A          168 FRRVAAALPG  177 (179)
T ss_dssp             HHHHHHTCC-
T ss_pred             HHHHHHHHhh
Confidence            9999987754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.97  E-value=1e-29  Score=204.70  Aligned_cols=163  Identities=31%  Similarity=0.523  Sum_probs=145.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      +.+||+++|++|+|||||++++.++.+...+.++.+ ++....+..++..+.+.+|||||++++..++..+++.+|++++
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   83 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL   83 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence            579999999999999999999999988777777765 5667778888888889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |+|++++.+++.+..|+..+....  ++.|+++|+||+|+. ..+.....+.+.+++..+++++++||++|.|++++|++
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  160 (168)
T 1z2a_A           84 VFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLL-DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY  160 (168)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccC-cccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence            999999999999999998887754  589999999999997 44556677888889999999999999999999999999


Q ss_pred             HHHHhhc
Q psy10504        262 IVREMNF  268 (286)
Q Consensus       262 i~~~i~~  268 (286)
                      |.+.+.+
T Consensus       161 l~~~~~~  167 (168)
T 1z2a_A          161 LAEKHLQ  167 (168)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9998754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.97  E-value=4e-30  Score=210.66  Aligned_cols=165  Identities=32%  Similarity=0.568  Sum_probs=117.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+||+++|++|+|||||+++|.++.+...+.++++ ++....+.+++..+.+.+|||||+++|..++..+++.+|++++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   86 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   86 (183)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence            579999999999999999999999888776666665 4555677888888889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++++.+++.+..|+..+... ..+++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++|++
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  164 (183)
T 2fu5_C           87 VYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVN-DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  164 (183)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CC-SCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCC-ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999888774 34589999999999997 44566778888899999999999999999999999999


Q ss_pred             HHHHhhcC
Q psy10504        262 IVREMNFN  269 (286)
Q Consensus       262 i~~~i~~~  269 (286)
                      |.+.+.+.
T Consensus       165 l~~~i~~~  172 (183)
T 2fu5_C          165 LARDIKAK  172 (183)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.97  E-value=1.9e-29  Score=203.46  Aligned_cols=165  Identities=35%  Similarity=0.558  Sum_probs=145.4

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      .+.+||+++|++|+|||||++++.++.+...+.++.+ +.....+..++..+.+.+|||||++++..++..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            3679999999999999999999999988777777765 344566778888888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|+|++++.+++.+..|+..+... ..+++|+++|+||+|+. ..+.+...+...++...+++++++||++|.|++++|+
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  161 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLT-DVREVMERDAKDYADSIHAIFVETSAKNAININELFI  161 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccc-cccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            999999999999999998888774 45689999999999997 4455677788888889999999999999999999999


Q ss_pred             HHHHHhhc
Q psy10504        261 EIVREMNF  268 (286)
Q Consensus       261 ~i~~~i~~  268 (286)
                      +|.+.+.+
T Consensus       162 ~i~~~i~~  169 (170)
T 1z0j_A          162 EISRRIPS  169 (170)
T ss_dssp             HHHHHCCC
T ss_pred             HHHHHHhc
Confidence            99998753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.97  E-value=2e-29  Score=205.37  Aligned_cols=166  Identities=33%  Similarity=0.506  Sum_probs=144.6

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      .+.+||+++|++|+|||||+++|.++.+...+.++.+ +.....+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   86 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI   86 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence            3679999999999999999999999888766666655 555677888998888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|+|++++.+++.+..|+..+...  .+++|+++|+||+|+. ..+.....+...++...+++++++||++|.|++++|+
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (181)
T 3tw8_B           87 VVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDP-ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN  163 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCc-hhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            999999999999999999988774  3489999999999987 4556677888889999999999999999999999999


Q ss_pred             HHHHHhhcCC
Q psy10504        261 EIVREMNFNP  270 (286)
Q Consensus       261 ~i~~~i~~~~  270 (286)
                      +|.+.+.+..
T Consensus       164 ~l~~~~~~~~  173 (181)
T 3tw8_B          164 CITELVLRAK  173 (181)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999886543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=6e-30  Score=212.41  Aligned_cols=167  Identities=39%  Similarity=0.692  Sum_probs=149.2

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      +.+.+||+++|++|+|||||+++|.++.+...+.++++......+.+++..+.+.+|||||+++ ..++..+++.+|+++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            3467999999999999999999999999988888888877777788899888999999999988 778889999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCC-cHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT-NVNEMF  259 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~-gv~~l~  259 (286)
                      +|||++++.+++.+..|+..+......+++|+++|+||+|+. ..+.+...+...+++..+++++++||++|. |++++|
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~  182 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD-HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF  182 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc-cccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence            999999999999999999988886666789999999999997 445677788888998899999999999999 999999


Q ss_pred             HHHHHHhhcC
Q psy10504        260 AEIVREMNFN  269 (286)
Q Consensus       260 ~~i~~~i~~~  269 (286)
                      ++|++.+.+.
T Consensus       183 ~~l~~~i~~~  192 (196)
T 2atv_A          183 YELCREVRRR  192 (196)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999988653

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=9.9e-30  Score=205.31  Aligned_cols=165  Identities=44%  Similarity=0.794  Sum_probs=144.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +.+||+++|++|+|||||++++.++.+...+.++.+.........++..+.+.+|||||++++..++..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            46899999999999999999999998887777887766667777888888899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      +|++++.+++.+..|+..+.... ..+++|+++|+||+|+. ..+.+...+.+.++...+++++++||++|.|++++|++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES-PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc-cccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            99999999999999988887654 23579999999999997 44556677788888888999999999999999999999


Q ss_pred             HHHHhhc
Q psy10504        262 IVREMNF  268 (286)
Q Consensus       262 i~~~i~~  268 (286)
                      |.+.+..
T Consensus       161 l~~~~~~  167 (172)
T 2erx_A          161 LLNLEKR  167 (172)
T ss_dssp             HHHTCCS
T ss_pred             HHHHHhh
Confidence            9997754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.97  E-value=5.1e-29  Score=202.59  Aligned_cols=167  Identities=34%  Similarity=0.563  Sum_probs=142.5

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ..+.++|+++|++|+|||||++++.++.+...+.++.+ ++....+.+++..+.+.+|||||++++..++..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            34679999999999999999999999888777777665 45567778889888899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhC---CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-hcCCCEEEEeCCCCCcH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKG---SERVPILLVANKLDLASHQREVPTLDGQALAQ-SWGCPFIEASAKNKTNV  255 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~gv  255 (286)
                      ++|+|++++.+++.+..|+..+.....   ..++|+++|+||+|+.  .+.....+...+++ ..+++++++||++|.|+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS--SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            999999999999999999988876543   2578999999999997  45566777777777 56789999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q psy10504        256 NEMFAEIVREMNFN  269 (286)
Q Consensus       256 ~~l~~~i~~~i~~~  269 (286)
                      +++|++|++.+.+.
T Consensus       162 ~~l~~~l~~~~~~~  175 (177)
T 1wms_A          162 AAAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.97  E-value=2e-29  Score=205.51  Aligned_cols=162  Identities=23%  Similarity=0.435  Sum_probs=139.9

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ++.+||+++|++|||||||+++|.++.+.. +.+|+++.....+.+++..+.+.+|||||+++     ..+++++|++++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            467999999999999999999999998876 77788877788888999988999999999986     457888999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhC--CCCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHhc-CCCEEEEeCCCCCcHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKG--SERVPILLVANKLDLAS-HQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNE  257 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~gv~~  257 (286)
                      |||++++.+++.+..|+..+.....  .+++|+++|+||+|+.. ..+.+...+.+.++... +++++++||++|.|+++
T Consensus        79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  158 (178)
T 2iwr_A           79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDR  158 (178)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHH
Confidence            9999999999999998777765543  35899999999999952 34567778888888776 68999999999999999


Q ss_pred             HHHHHHHHhhcC
Q psy10504        258 MFAEIVREMNFN  269 (286)
Q Consensus       258 l~~~i~~~i~~~  269 (286)
                      +|++|.+.+.+.
T Consensus       159 lf~~l~~~~~~~  170 (178)
T 2iwr_A          159 VFQEVAQKVVTL  170 (178)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.97  E-value=1.7e-29  Score=203.76  Aligned_cols=164  Identities=37%  Similarity=0.620  Sum_probs=139.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+||+++|++|+|||||++++.++.+...+.++.+ ++....+..++..+.+.+|||||++++..++..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            468999999999999999999999888776666655 4556677788888889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |+|++++.+++.+..|+..+.... .+++|+++|+||+|+.  .+.....+.+.+++..+++++++||++|.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  158 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT  158 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCT--TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCC--cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            999999999999999998887753 3589999999999994  4456677888888899999999999999999999999


Q ss_pred             HHHHhhcC
Q psy10504        262 IVREMNFN  269 (286)
Q Consensus       262 i~~~i~~~  269 (286)
                      |.+.+.+.
T Consensus       159 l~~~~~~~  166 (170)
T 1g16_A          159 LAKLIQEK  166 (170)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99998764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.97  E-value=1.4e-29  Score=207.68  Aligned_cols=166  Identities=33%  Similarity=0.462  Sum_probs=146.9

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      .+.+||+++|++|||||||+++|.++.+...+.++.+ ++....+..++..+.+.+|||||++++..++..+++.+|+++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            4679999999999999999999999988777777665 555677788888888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|+|++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.+...+...++...+++++++||++|.|++++|+
T Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  165 (186)
T 2bme_A           88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLD-ADREVTFLEASRFAQENELMFLETSALTGENVEEAFV  165 (186)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            9999999999999999998887653 3589999999999996 4456677788888999999999999999999999999


Q ss_pred             HHHHHhhcC
Q psy10504        261 EIVREMNFN  269 (286)
Q Consensus       261 ~i~~~i~~~  269 (286)
                      ++.+.+.+.
T Consensus       166 ~l~~~~~~~  174 (186)
T 2bme_A          166 QCARKILNK  174 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.97  E-value=4.3e-29  Score=208.74  Aligned_cols=165  Identities=34%  Similarity=0.551  Sum_probs=146.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      .+.+||+++|++|+|||||+++|.++.+...+.++++ ++....+.+++..+.+.+|||||++++..++..+++.+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi   85 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   85 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence            3679999999999999999999999988877777665 455567788888888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|||++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.+...+...++...+++++++||++|.|++++|+
T Consensus        86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  163 (206)
T 2bcg_Y           86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLK-DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  163 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCc-cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999999998887753 4589999999999997 4456677788888889999999999999999999999


Q ss_pred             HHHHHhhc
Q psy10504        261 EIVREMNF  268 (286)
Q Consensus       261 ~i~~~i~~  268 (286)
                      +|.+.+.+
T Consensus       164 ~l~~~i~~  171 (206)
T 2bcg_Y          164 TMARQIKE  171 (206)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99997653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.1e-29  Score=208.05  Aligned_cols=168  Identities=33%  Similarity=0.522  Sum_probs=148.1

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ..+.+||+++|++|+|||||+++|.++.+...+.++.+ ++....+.+++..+.+.+|||||++++..++..+++.+|++
T Consensus        12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   91 (195)
T 1x3s_A           12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   91 (195)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            35679999999999999999999999988877777765 45556778888888999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      ++|+|++++.+++.+..|+..+.......++|+++|+||+|+.  .+.+...+...+++..+++++++||+++.|++++|
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  169 (195)
T 1x3s_A           92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF  169 (195)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc--ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence            9999999999999999998888775444689999999999995  34566777888888999999999999999999999


Q ss_pred             HHHHHHhhcCC
Q psy10504        260 AEIVREMNFNP  270 (286)
Q Consensus       260 ~~i~~~i~~~~  270 (286)
                      ++|.+.+.+.+
T Consensus       170 ~~l~~~~~~~~  180 (195)
T 1x3s_A          170 EELVEKIIQTP  180 (195)
T ss_dssp             HHHHHHHHTSG
T ss_pred             HHHHHHHHhhh
Confidence            99999987654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.3e-29  Score=209.90  Aligned_cols=168  Identities=34%  Similarity=0.540  Sum_probs=144.8

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccc-eEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      .+.+||+++|++|+|||||+++|.++.+...+.++.+. .....+..++..+.+.+|||||++++..++..+++.+|+++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            46799999999999999999999999887777777653 34455677778888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|+|++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++|+
T Consensus       101 lV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  178 (192)
T 2fg5_A          101 IVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLS-DIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ  178 (192)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            9999999999999999999887753 4589999999999997 4456677888899999999999999999999999999


Q ss_pred             HHHHHhhcCCC
Q psy10504        261 EIVREMNFNPE  271 (286)
Q Consensus       261 ~i~~~i~~~~~  271 (286)
                      +|.+.+.+.+.
T Consensus       179 ~l~~~i~~~~~  189 (192)
T 2fg5_A          179 GISRQIPPLDP  189 (192)
T ss_dssp             HHHHTCC----
T ss_pred             HHHHHHHhhCC
Confidence            99998876543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.97  E-value=1.4e-29  Score=213.55  Aligned_cols=169  Identities=30%  Similarity=0.542  Sum_probs=127.4

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ..+.+||+++|++|+|||||+++|.++.+...+.+|+.+.....+.+++..+.+.+|||||+++|..++..+++.+|+++
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            45679999999999999999999999988888888888777778888999889999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcCC-CEEEE
Q psy10504        181 VVYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWGC-PFIEA  247 (286)
Q Consensus       181 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~v  247 (286)
                      +|||++++.+++.+. .|+..+...  .+++|+++|+||+|+.+..           +.+...+...+++..+. ++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  188 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC  188 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence            999999999999987 688877764  3589999999999997432           35677788888888897 99999


Q ss_pred             eCCCCCcHHHHHHHHHHHhhcCCC
Q psy10504        248 SAKNKTNVNEMFAEIVREMNFNPE  271 (286)
Q Consensus       248 Sa~~~~gv~~l~~~i~~~i~~~~~  271 (286)
                      ||++|.|++++|++|++.+.+.+.
T Consensus       189 SA~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          189 SARLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHC--
T ss_pred             cCCCCCCHHHHHHHHHHHHHHhhc
Confidence            999999999999999999876543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.97  E-value=4.3e-29  Score=205.62  Aligned_cols=168  Identities=28%  Similarity=0.463  Sum_probs=145.3

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceE--EEEEEECCe---------EEEEEEEeCCCcccchhhh
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFY--RKEIEVDKA---------PCVLEILDTAGTEQFASMR  169 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~---------~~~l~l~DtpG~~~~~~~~  169 (286)
                      ..+.+||+++|++|+|||||+++|.++.+...+.+|.+...  ...+..++.         .+.+.+|||||++++..++
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   87 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT   87 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence            34679999999999999999999999888777777765333  345556655         6779999999999999999


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC
Q psy10504        170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASA  249 (286)
Q Consensus       170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa  249 (286)
                      ..+++.+|++++|+|++++.+++.+..|+..+......+++|+++|+||+|+. ..+.+...+.+.++...+++++++||
T Consensus        88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa  166 (195)
T 3bc1_A           88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE-DQRAVKEEEARELAEKYGIPYFETSA  166 (195)
T ss_dssp             HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred             HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-cccccCHHHHHHHHHHcCCCEEEEEC
Confidence            99999999999999999999999999999988876554689999999999997 44556777888888889999999999


Q ss_pred             CCCCcHHHHHHHHHHHhhcC
Q psy10504        250 KNKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       250 ~~~~gv~~l~~~i~~~i~~~  269 (286)
                      ++|.|++++|++|.+.+.+.
T Consensus       167 ~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          167 ANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             TTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.97  E-value=1.5e-29  Score=207.95  Aligned_cols=165  Identities=27%  Similarity=0.448  Sum_probs=145.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ...+||+++|++|+|||||+++|.++.+...+.+|.+......+.+++..+.+.+|||||+++|..++..+++.+|++++
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   84 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   84 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence            46799999999999999999999999988888888877777777888888889999999999999999999999999999


Q ss_pred             EEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcC-CCEEEEe
Q psy10504        182 VYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWG-CPFIEAS  248 (286)
Q Consensus       182 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~vS  248 (286)
                      |||++++.+++.+ ..|+..+...  .+++|+++|+||+|+.++           .+.+..++.+.+++.++ .++++||
T Consensus        85 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  162 (184)
T 1m7b_A           85 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  162 (184)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence            9999999999998 6788877764  358999999999999732           25577788888998887 7899999


Q ss_pred             CC-CCCcHHHHHHHHHHHhhc
Q psy10504        249 AK-NKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       249 a~-~~~gv~~l~~~i~~~i~~  268 (286)
                      |+ ++.|++++|+++++.+.+
T Consensus       163 a~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          163 ALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TTTBHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCcCHHHHHHHHHHHHhc
Confidence            99 689999999999998754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.97  E-value=2e-29  Score=208.55  Aligned_cols=167  Identities=31%  Similarity=0.501  Sum_probs=145.9

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ..+.+||+++|++|+|||||+++|.++.+...+.++.+ ++....+.+++..+.+.+|||||++++..++..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            45679999999999999999999999988777777654 44556677888888899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      ++|+|++++.+++.+..|+..+... ...++|+++|+||+|+. ..+.+...+.+.++...+++++++||++|.|++++|
T Consensus       102 i~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  179 (193)
T 2oil_A          102 LLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLS-QAREVPTEEARMFAENNGLLFLETSALDSTNVELAF  179 (193)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcc-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999998888764 33589999999999997 445567778888888899999999999999999999


Q ss_pred             HHHHHHhhcC
Q psy10504        260 AEIVREMNFN  269 (286)
Q Consensus       260 ~~i~~~i~~~  269 (286)
                      ++|.+.+.+.
T Consensus       180 ~~l~~~i~~~  189 (193)
T 2oil_A          180 ETVLKEIFAK  189 (193)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988653

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.97  E-value=2.2e-29  Score=205.30  Aligned_cols=168  Identities=32%  Similarity=0.532  Sum_probs=131.9

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEEC-CeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD-KAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      .+.++|+++|++|+|||||++++.++.+...+.++.+ ++....+.++ +..+.+.+|||||++.+..++..+++.+|++
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC   85 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence            4679999999999999999999999888777777664 5556666666 5567799999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhC---CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-hcCCCEEEEeCCCCCcH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKG---SERVPILLVANKLDLASHQREVPTLDGQALAQ-SWGCPFIEASAKNKTNV  255 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~gv  255 (286)
                      ++|+|++++.+++.+..|+..+.....   ..++|+++|+||+|+.+..+.+...+.+.+++ ..+.+++++||++|.|+
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  165 (182)
T 1ky3_A           86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINV  165 (182)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSH
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCH
Confidence            999999999999999999988876542   25889999999999975555667777888887 56689999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q psy10504        256 NEMFAEIVREMNFN  269 (286)
Q Consensus       256 ~~l~~~i~~~i~~~  269 (286)
                      +++|++|.+.+.+.
T Consensus       166 ~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          166 DTAFEEIARSALQQ  179 (182)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=209.19  Aligned_cols=166  Identities=36%  Similarity=0.607  Sum_probs=138.7

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ....+||+++|++|+|||||+++|.++.+...+.++.+ +.....+.+++..+.+.+|||||++++..++..+++.+|++
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i  102 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI  102 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999999888777666665 55567778888888899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc-CCCEEEEeCCCCCcHHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~gv~~l  258 (286)
                      ++|||++++.+++.+..|+..+... ...++|+++|+||+|+. ..+.+...+.+.+++.. +.+++++||++|.|++++
T Consensus       103 ilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  180 (192)
T 2il1_A          103 ILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCE-TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI  180 (192)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccc-cccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence            9999999999999999998887764 34589999999999997 44566777788888875 789999999999999999


Q ss_pred             HHHHHHHhhc
Q psy10504        259 FAEIVREMNF  268 (286)
Q Consensus       259 ~~~i~~~i~~  268 (286)
                      |++|.+.+.+
T Consensus       181 ~~~l~~~i~~  190 (192)
T 2il1_A          181 FLKLVDDILK  190 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.97  E-value=1.5e-29  Score=210.70  Aligned_cols=168  Identities=33%  Similarity=0.569  Sum_probs=137.3

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG  178 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~  178 (286)
                      ...+.+||+++|++|+|||||+++|.++.+...+.++.+ ++....+.+++..+.+.+|||||++++..++..+++.+|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            345679999999999999999999999888776666655 4556777888988889999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC-----CCCCCCHHHHHHHHHhcCCCEEEEeCCCCC
Q psy10504        179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS-----HQREVPTLDGQALAQSWGCPFIEASAKNKT  253 (286)
Q Consensus       179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~  253 (286)
                      +++|||++++.+++.+..|+..+... ...++|+++|+||+|+.+     ..+.+...+.+.+++..+++++++||++|.
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~  182 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS  182 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence            99999999999999999998888764 335789999999999962     345667778888898999999999999999


Q ss_pred             cHHHHHHHHHHHhhc
Q psy10504        254 NVNEMFAEIVREMNF  268 (286)
Q Consensus       254 gv~~l~~~i~~~i~~  268 (286)
                      |++++|++|++.+.+
T Consensus       183 gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          183 NIVEAVLHLAREVKK  197 (199)
T ss_dssp             THHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999998864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.97  E-value=1.4e-29  Score=211.30  Aligned_cols=167  Identities=32%  Similarity=0.453  Sum_probs=138.4

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      .+.+||+++|++|+|||||+++|.++.+...+.++.+ ++....+.+++..+.+.+|||||++++..++..+++.+|+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            4679999999999999999999999888777766655 555677788888888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|||++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.+...+...+++..++++++|||++|.|++++|+
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  180 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLD-PEREVTFLEASRFAQENELMFLETSALTGENVEEAFL  180 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcc-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999998887753 3589999999999997 4455677788888999999999999999999999999


Q ss_pred             HHHHHhhcCC
Q psy10504        261 EIVREMNFNP  270 (286)
Q Consensus       261 ~i~~~i~~~~  270 (286)
                      +|++.+.+..
T Consensus       181 ~l~~~i~~~~  190 (200)
T 2o52_A          181 KCARTILNKI  190 (200)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999886543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.97  E-value=7.5e-29  Score=206.64  Aligned_cols=164  Identities=30%  Similarity=0.541  Sum_probs=145.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+||+++|++|+|||||+++|.++.+...+.++.+ ++....+..++..+.+.+|||||++++..++..+++.+|++++
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   86 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL   86 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence            579999999999999999999999988777777665 4445667788888889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |+|++++.+++.+..|+..+.... ..++|+++|+||+|+. ..+.+...+.+.+++.++++++++||++|.|++++|++
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (203)
T 1zbd_A           87 MYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDME-DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  164 (203)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCT-TSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccC-cccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence            999999999999999998887743 4589999999999997 45566778888899999999999999999999999999


Q ss_pred             HHHHhhc
Q psy10504        262 IVREMNF  268 (286)
Q Consensus       262 i~~~i~~  268 (286)
                      |.+.+.+
T Consensus       165 l~~~i~~  171 (203)
T 1zbd_A          165 LVDVICE  171 (203)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.3e-29  Score=212.41  Aligned_cols=170  Identities=29%  Similarity=0.484  Sum_probs=140.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      .+.+||+++|++|+|||||+++|.++.+...+.++.+ ++....+.+++..+.+.+|||||+++|..++..+++.+|++|
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            4679999999999999999999999988777666655 455667888888888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|||++++.+++.+..|+..+.... ..++|+++|+||+|+. ..+.+...+...+++..+++++++||++|.|++++|+
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  168 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLA-HLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE  168 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGG-GGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999998887753 4578999999999997 4456677788888888999999999999999999999


Q ss_pred             HHHHHhhcCCCCc
Q psy10504        261 EIVREMNFNPEKD  273 (286)
Q Consensus       261 ~i~~~i~~~~~~~  273 (286)
                      +|++.+.+.....
T Consensus       169 ~l~~~i~~~~~~~  181 (223)
T 3cpj_B          169 ELINTIYQKVSKH  181 (223)
T ss_dssp             HHHHHHTTCC---
T ss_pred             HHHHHHHHHhhhc
Confidence            9999987654443

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=3.1e-30  Score=213.27  Aligned_cols=167  Identities=29%  Similarity=0.529  Sum_probs=147.6

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+ +.....+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            4679999999999999999999999888777666654 555667777888888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|||++++.+++.+..|+..+... ..+++|+++|+||+|+. ..+.....+.+.+++..+++++++||++|.|++++|+
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  178 (191)
T 3dz8_A          101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDME-EERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE  178 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCc-cccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            999999999999999999988774 34589999999999997 5566778888999999999999999999999999999


Q ss_pred             HHHHHhhcCC
Q psy10504        261 EIVREMNFNP  270 (286)
Q Consensus       261 ~i~~~i~~~~  270 (286)
                      +|++.+.+..
T Consensus       179 ~l~~~i~~~~  188 (191)
T 3dz8_A          179 RLVDAICDKM  188 (191)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999886543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.97  E-value=2.5e-29  Score=210.94  Aligned_cols=166  Identities=27%  Similarity=0.445  Sum_probs=144.8

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ....+||+++|++|+|||||+++|.++.+...+.+|++......+.+++..+.+.+|||||+++|..++..+++.+|+++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  104 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL  104 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence            34679999999999999999999999999888888887766677778888888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcC-CCEEEE
Q psy10504        181 VVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWG-CPFIEA  247 (286)
Q Consensus       181 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~v  247 (286)
                      +|||++++.+++++ ..|+..+...  .+++|+++|+||+|+.++           .+.+..++.+.+++..+ .++++|
T Consensus       105 lv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  182 (205)
T 1gwn_A          105 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  182 (205)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence            99999999999998 6788888764  358999999999999732           25577788888998887 799999


Q ss_pred             eCC-CCCcHHHHHHHHHHHhhc
Q psy10504        248 SAK-NKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       248 Sa~-~~~gv~~l~~~i~~~i~~  268 (286)
                      ||+ ++.|++++|++|++.+.+
T Consensus       183 SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          183 SALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHH
T ss_pred             eeccCCcCHHHHHHHHHHHHhh
Confidence            999 689999999999988753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.96  E-value=1.3e-28  Score=205.44  Aligned_cols=167  Identities=29%  Similarity=0.476  Sum_probs=145.2

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      .....+||+++|++|+|||||++++.++.+...+.++++......+.+++..+.+.+|||||++++..++..+++.+|++
T Consensus        21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (201)
T 2gco_A           21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (201)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence            34577999999999999999999999999888888888776667788889888899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcCC-CEEE
Q psy10504        180 VVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWGC-PFIE  246 (286)
Q Consensus       180 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~  246 (286)
                      ++|||++++.+++.+ ..|...+...  .+++|+++|+||+|+.+..           +.+...+...+++..+. ++++
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  178 (201)
T 2gco_A          101 LMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE  178 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence            999999999999998 5677777664  2489999999999997431           45677788888888887 8999


Q ss_pred             EeCCCCCcHHHHHHHHHHHhhc
Q psy10504        247 ASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       247 vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      +||++|.|++++|++|.+.+.+
T Consensus       179 ~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          179 CSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHC
T ss_pred             eeCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999987653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.1e-28  Score=206.80  Aligned_cols=168  Identities=33%  Similarity=0.497  Sum_probs=140.8

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      .+..+||+++|++|+|||||+++|.++.+...+.+++++.....+..++..+.+.+|||||++++..++..+++.+|+++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            34679999999999999999999999988888888888777777888998888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcCC-CEEEE
Q psy10504        181 VVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWGC-PFIEA  247 (286)
Q Consensus       181 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~v  247 (286)
                      +|||++++.+++.+ ..|+..+...  .+++|+++|+||+|+.+..           +.+...+...++...+. +++++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC  179 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence            99999999999998 5677777663  3589999999999997331           44667778888888887 89999


Q ss_pred             eCCCCCcHHHHHHHHHHHhhcCC
Q psy10504        248 SAKNKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       248 Sa~~~~gv~~l~~~i~~~i~~~~  270 (286)
                      ||++|.|++++|++|.+.+.+..
T Consensus       180 SA~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          180 SAKTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHSCC
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999987654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.96  E-value=2.2e-29  Score=212.14  Aligned_cols=167  Identities=28%  Similarity=0.487  Sum_probs=142.1

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCe----------EEEEEEEeCCCcccchhhh
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKA----------PCVLEILDTAGTEQFASMR  169 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~----------~~~l~l~DtpG~~~~~~~~  169 (286)
                      ..+.+||+++|++|+|||||+++|.++.+...+.+|.+ ++....+.+++.          .+.+.+|||||+++|..++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            34679999999999999999999999888766666654 333455566655          6779999999999999999


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC
Q psy10504        170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASA  249 (286)
Q Consensus       170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa  249 (286)
                      ..+++.+|++++|||++++.+++.+..|+..+.......++|+++|+||+|+. ..+.+...+.+.+++..++++++|||
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa  180 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP-DQREVNERQARELADKYGIPYFETSA  180 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc-cccccCHHHHHHHHHHCCCcEEEEEC
Confidence            99999999999999999999999999888877654333689999999999997 44566778888899999999999999


Q ss_pred             CCCCcHHHHHHHHHHHhhc
Q psy10504        250 KNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       250 ~~~~gv~~l~~~i~~~i~~  268 (286)
                      ++|.|++++|++|.+.+.+
T Consensus       181 ~~g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          181 ATGQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             TTTBTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.96  E-value=2.9e-29  Score=208.24  Aligned_cols=167  Identities=32%  Similarity=0.547  Sum_probs=137.5

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhc--CcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCccc-chhhhhhcccCccE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVS--GCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ-FASMRDLYIKNGQG  178 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~-~~~~~~~~~~~~d~  178 (286)
                      ...+||+++|++|||||||+++|.+  ..+...+.++..++....+.+++..+.+.+|||+|++. +..++..+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            3569999999999999999999996  34455555555577777888999998899999999876 56677888999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504        179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l  258 (286)
                      +++|||++++.+++.+..|+..+......+++|+++|+||+|+. ..+.+...+...++...++++++|||++|.|++++
T Consensus        84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~-~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh-ccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            99999999999999999998888775545689999999999997 34556677777888888899999999999999999


Q ss_pred             HHHHHHHhhcC
Q psy10504        259 FAEIVREMNFN  269 (286)
Q Consensus       259 ~~~i~~~i~~~  269 (286)
                      |+++++.+...
T Consensus       163 f~~l~~~~~~~  173 (192)
T 2cjw_A          163 FEGIVRQVRLR  173 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999988543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.96  E-value=3.9e-29  Score=207.25  Aligned_cols=173  Identities=18%  Similarity=0.264  Sum_probs=129.2

Q ss_pred             CCCCCcceEEEEEECCCCCcHHHHHHHHhcCcCCC-ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccC
Q psy10504         97 DNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFME-KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKN  175 (286)
Q Consensus        97 ~~~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~  175 (286)
                      +..++...+||+++|++|||||||+++|.++.+.. .+.+|++ .....+...+  +.+.+|||||++++..++..+++.
T Consensus        10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~   86 (199)
T 4bas_A           10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG-YNVETFEKGR--VAFTVFDMGGAKKFRGLWETYYDN   86 (199)
T ss_dssp             ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS-EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTT
T ss_pred             cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc-eeEEEEEeCC--EEEEEEECCCCHhHHHHHHHHHhc
Confidence            34556688999999999999999999999998887 7777776 3334444444  459999999999999999999999


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHHhCC-------CCCcEEEEEeCCCCCCCCCCCCHHHHH---HHHHhcCCCEE
Q psy10504        176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGS-------ERVPILLVANKLDLASHQREVPTLDGQ---ALAQSWGCPFI  245 (286)
Q Consensus       176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-------~~~piivv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~  245 (286)
                      +|++|+|||++++.+++.+..|+..+......       +++|+++|+||+|+.+........+..   .+.+..+++++
T Consensus        87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (199)
T 4bas_A           87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIF  166 (199)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEE
T ss_pred             CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEE
Confidence            99999999999999999999988887653211       378999999999997432111111111   11134668899


Q ss_pred             EEeCCCCCcHHHHHHHHHHHhhcCCCC
Q psy10504        246 EASAKNKTNVNEMFAEIVREMNFNPEK  272 (286)
Q Consensus       246 ~vSa~~~~gv~~l~~~i~~~i~~~~~~  272 (286)
                      +|||++|.|++++|++|.+.+.+...+
T Consensus       167 ~~Sa~~g~gv~~l~~~l~~~~~~~~~~  193 (199)
T 4bas_A          167 ASNGLKGTGVHEGFSWLQETASRQSGK  193 (199)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred             EeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999998765443

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.96  E-value=5.2e-30  Score=209.39  Aligned_cols=165  Identities=30%  Similarity=0.534  Sum_probs=127.2

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .+.+||+++|++|+|||||++++.++.+...+.+|+++.....+..++..+.+.+|||||++++..++..+++.+|++++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   85 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence            35699999999999999999999999888888888775555555567777778899999999999999999999999999


Q ss_pred             EEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC---------CCCHHHHHHHHHhcCC-CEEEEeCC
Q psy10504        182 VYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQR---------EVPTLDGQALAQSWGC-PFIEASAK  250 (286)
Q Consensus       182 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~-~~~~vSa~  250 (286)
                      |+|++++.+++.+. .|+..+....  +++|+++|+||+|+.+...         .+...+.+.+++..+. ++++|||+
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  163 (182)
T 3bwd_D           86 AFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK  163 (182)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence            99999999999997 6888777642  4899999999999863321         2467778888888886 99999999


Q ss_pred             CCCcHHHHHHHHHHHhhc
Q psy10504        251 NKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       251 ~~~gv~~l~~~i~~~i~~  268 (286)
                      +|.|++++|++|.+.+..
T Consensus       164 ~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          164 SQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TCTTHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999998753

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.96  E-value=5e-29  Score=208.56  Aligned_cols=164  Identities=29%  Similarity=0.532  Sum_probs=142.4

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ..+.+||+++|++|+|||||++++.++.+...+.+++.+.....+..++..+.+.+|||||+++|..++..+++.+|+++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            45679999999999999999999999999988999998888888889999988999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcCC-CEEEE
Q psy10504        181 VVYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWGC-PFIEA  247 (286)
Q Consensus       181 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~v  247 (286)
                      +|||++++.+++++. .|+..+....  +++|+++|+||+|+.+..           +.+...+...+++..+. ++++|
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  184 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence            999999999999997 6887777653  589999999999997322           23667788888888885 59999


Q ss_pred             eCCCCCcHHHHHHHHHHHh
Q psy10504        248 SAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       248 Sa~~~~gv~~l~~~i~~~i  266 (286)
                      ||++|.|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTTCTTHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=2e-28  Score=205.21  Aligned_cols=164  Identities=37%  Similarity=0.608  Sum_probs=143.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ...++|+++|++|+|||||+++|.++.+...+.++++ ++....+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            4679999999999999999999999888766666655 556677888888888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|||++++.+++.+..|+..+.... ..++|+++|+||+|+.  .+.....+.+.++...+++++++||++|.|++++|+
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  174 (213)
T 3cph_A           98 LVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF  174 (213)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCS--SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCc--ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999998887753 3478999999999994  455667778888888999999999999999999999


Q ss_pred             HHHHHhhc
Q psy10504        261 EIVREMNF  268 (286)
Q Consensus       261 ~i~~~i~~  268 (286)
                      +|.+.+.+
T Consensus       175 ~l~~~~~~  182 (213)
T 3cph_A          175 TLAKLIQE  182 (213)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998765

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.96  E-value=3.1e-28  Score=201.81  Aligned_cols=161  Identities=30%  Similarity=0.470  Sum_probs=139.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeE------------------------------
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAP------------------------------  151 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~------------------------------  151 (286)
                      ..+||+++|++|+|||||+++|+++.+...+.++++ ++....+.+++..                              
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN   85 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence            569999999999999999999999988877777775 4445556666544                              


Q ss_pred             -------EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC
Q psy10504        152 -------CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH  224 (286)
Q Consensus       152 -------~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~  224 (286)
                             +.+.+|||||++++..++..+++.+|++++|+|++++.+++.+..|+..+....   +.|+++|+||+| . .
T Consensus        86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D-~-~  160 (208)
T 3clv_A           86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKID-K-N  160 (208)
T ss_dssp             CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT-C-C
T ss_pred             ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC-c-c
Confidence                   779999999999999999999999999999999999999999999988887743   489999999999 3 4


Q ss_pred             CCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        225 QREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      .+.....+.+.+++..+++++++||++|.|++++|++|.+.+.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            56677788889999999999999999999999999999998764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.96  E-value=2.7e-28  Score=203.59  Aligned_cols=165  Identities=33%  Similarity=0.533  Sum_probs=142.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      .+.++|+++|++|+|||||+++|.++.+...+.++++ ++....+.+++..+.+.+|||||++++..++..+++.+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV   85 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence            4679999999999999999999999988877777764 555667778888888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCC---CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-hcCCCEEEEeCCCCCcHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGS---ERVPILLVANKLDLASHQREVPTLDGQALAQ-SWGCPFIEASAKNKTNVN  256 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~gv~  256 (286)
                      +|+|++++.+++.+..|+..+......   .++|+++|+||+|+.  .+.....+...++. ..+++++++||++|.|++
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (207)
T 1vg8_A           86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE  163 (207)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS--CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999998888765421   478999999999997  34456667777776 667899999999999999


Q ss_pred             HHHHHHHHHhhc
Q psy10504        257 EMFAEIVREMNF  268 (286)
Q Consensus       257 ~l~~~i~~~i~~  268 (286)
                      ++|++|.+.+.+
T Consensus       164 ~l~~~l~~~~~~  175 (207)
T 1vg8_A          164 QAFQTIARNALK  175 (207)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.96  E-value=2.4e-29  Score=209.72  Aligned_cols=168  Identities=26%  Similarity=0.340  Sum_probs=110.9

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCcc-ceEEEEEEECCe--EEEEEEEeCCCcccchhhhhhcccCc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIE-DFYRKEIEVDKA--PCVLEILDTAGTEQFASMRDLYIKNG  176 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~-~~~~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~~~~~~  176 (286)
                      ...++|+++|++|+|||||+++|.++  .+...+.+|++ ++....+.+++.  .+.+.+|||||++++..++..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46799999999999999999999998  78878888876 666777888876  77899999999999999999999999


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHHhC--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC-CC
Q psy10504        177 QGFVVVYSLTNHHTFQDIKQMKELITRVKG--SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN-KT  253 (286)
Q Consensus       177 d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~-~~  253 (286)
                      |++++|||++++.+++.+..|+..+.....  ..++|+++|+||+|+.+..+.+...+...+++..+++++++||++ |.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999887543  258999999999999732566777888999999999999999999 99


Q ss_pred             cHHHHHHHHHHHhhcC
Q psy10504        254 NVNEMFAEIVREMNFN  269 (286)
Q Consensus       254 gv~~l~~~i~~~i~~~  269 (286)
                      |++++|++|.+.+.+.
T Consensus       178 gi~~l~~~i~~~~~~~  193 (208)
T 2yc2_C          178 DADAPFLSIATTFYRN  193 (208)
T ss_dssp             --CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999987643

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.96  E-value=3.9e-28  Score=204.64  Aligned_cols=171  Identities=23%  Similarity=0.398  Sum_probs=141.3

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEE-EEEEEC-CeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYR-KEIEVD-KAPCVLEILDTAGTEQFASMRDLYIKNGQG  178 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~  178 (286)
                      ....+||+++|++|||||||+++|+++.+...+.++.+.... ..+... +..+.+.+|||||++.+..++..+++.+|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            346799999999999999999999998888777777653333 333333 334779999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504        179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l  258 (286)
                      +++|+|++++.+++++..|+..+..... .++|+++|+||+|+. ..+.+.......++...+++++++||++|.|++++
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  165 (218)
T 4djt_A           88 AILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIK-NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP  165 (218)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHC-SSSCEEEEEECTTCC-----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCc-cccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence            9999999999999999999998887543 368999999999997 45567777788888888999999999999999999


Q ss_pred             HHHHHHHhhcCCCCc
Q psy10504        259 FAEIVREMNFNPEKD  273 (286)
Q Consensus       259 ~~~i~~~i~~~~~~~  273 (286)
                      |++|.+.+.+.+...
T Consensus       166 ~~~l~~~~~~~~~~~  180 (218)
T 4djt_A          166 FLHLARIFTGRPDLI  180 (218)
T ss_dssp             HHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHhcccccc
Confidence            999999987765443

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.96  E-value=7.2e-28  Score=198.75  Aligned_cols=163  Identities=19%  Similarity=0.285  Sum_probs=130.0

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCc-CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGC-FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG  178 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~  178 (286)
                      ...+.+||+++|++|+|||||+++|.++. +...+.+|.+ .....+.+++.  .+.+|||||++++..++..+++.+|+
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 2h57_A           17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSSL--SFTVFDMSGQGRYRNLWEHYYKEGQA   93 (190)
T ss_dssp             ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSSC--EEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECCE--EEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            34567999999999999999999999987 5666666664 55566666664  48999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHHHhCC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----hcCCCEEEEeCCC
Q psy10504        179 FVVVYSLTNHHTFQDIKQMKELITRVKGS--ERVPILLVANKLDLASHQREVPTLDGQALAQ-----SWGCPFIEASAKN  251 (286)
Q Consensus       179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~  251 (286)
                      +++|+|++++.+++.+..|+..+......  .++|+++|+||+|+.+   .....+......     ..++++++|||++
T Consensus        94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  170 (190)
T 2h57_A           94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD---AVTSVKVSQLLCLENIKDKPWHICASDAIK  170 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT---CCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc---CCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence            99999999999999999998888775433  5899999999999973   223344444332     2356899999999


Q ss_pred             CCcHHHHHHHHHHHhhc
Q psy10504        252 KTNVNEMFAEIVREMNF  268 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i~~  268 (286)
                      |.|++++|++|.+.+.+
T Consensus       171 ~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          171 GEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TBTHHHHHHHHHHHC--
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999998765

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=2.1e-28  Score=201.46  Aligned_cols=164  Identities=18%  Similarity=0.241  Sum_probs=125.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +.++|+++|++|||||||++++.++.+. .+.+|.+ .....+.+++.  .+.+|||||++++..++..+++.+|++++|
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~-~~~~~~~~~~~--~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   90 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG-SNVEEIVINNT--RFLMWDIGGQESLRSSWNTYYTNTEFVIVV   90 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC-SSCEEEEETTE--EEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc-cceEEEEECCE--EEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            5699999999999999999999988776 5555654 33445566664  489999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----hcCCCEEEEeCCCCCcHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-----SWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~gv~~  257 (286)
                      +|++++.+++.+..|+..+.......++|+++|+||+|+.+.   ....+......     ..+++++++||++|.|+++
T Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  167 (187)
T 1zj6_A           91 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ  167 (187)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHH
Confidence            999999999999999888876433458999999999999732   22333333221     2346899999999999999


Q ss_pred             HHHHHHHHhhcCCCCc
Q psy10504        258 MFAEIVREMNFNPEKD  273 (286)
Q Consensus       258 l~~~i~~~i~~~~~~~  273 (286)
                      +|++|++.+...+...
T Consensus       168 l~~~l~~~~~~~~~~~  183 (187)
T 1zj6_A          168 GLEWMMSRLKIRLEHH  183 (187)
T ss_dssp             HHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999999987765544

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.96  E-value=1.1e-28  Score=198.25  Aligned_cols=157  Identities=16%  Similarity=0.265  Sum_probs=123.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      +||+++|++|+|||||++++.++.+.. +.+|.+ .....+..++  +.+.+|||||++++..++..+++.+|++++|+|
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS-CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc-eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999887764 455554 3344455544  448999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-HH----HhcCCCEEEEeCCCCCcHHHHH
Q psy10504        185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA-LA----QSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-~~----~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      ++++.+++.+..|+..+......+++|+++|+||+|+.+..   ...+... +.    ...++++++|||++|.|++++|
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC---CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            99999999999988887764444689999999999997321   1122111 11    1123579999999999999999


Q ss_pred             HHHHHHhhc
Q psy10504        260 AEIVREMNF  268 (286)
Q Consensus       260 ~~i~~~i~~  268 (286)
                      ++|.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999998764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.96  E-value=1.6e-27  Score=195.67  Aligned_cols=161  Identities=20%  Similarity=0.262  Sum_probs=130.4

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .+.++|+++|++|+|||||++++.++. ...+.+|.+ .....+.+++.  .+++|||||++++..++..+++.+|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~-~~~~~~~~~~~--~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG-FNIKTLEHRGF--KLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS-EEEEEEEETTE--EEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc-cceEEEEECCE--EEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            467999999999999999999999887 666666665 44455666654  48999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----hcCCCEEEEeCCCCCcHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-----SWGCPFIEASAKNKTNVN  256 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~gv~  256 (286)
                      |+|++++.+++++..|+..+......+++|+++|+||+|+.+. .  ...+......     ..+++++++||++|.|++
T Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA-L--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-C--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC-C--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            9999999999999999888776544468999999999999732 1  2222222211     234689999999999999


Q ss_pred             HHHHHHHHHhhcC
Q psy10504        257 EMFAEIVREMNFN  269 (286)
Q Consensus       257 ~l~~~i~~~i~~~  269 (286)
                      ++|++|.+.+.+.
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.96  E-value=5.7e-28  Score=201.32  Aligned_cols=158  Identities=18%  Similarity=0.227  Sum_probs=122.5

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .+.+||+++|++|||||||++++.++.+. .+.+|.+.. ...+.+++  +.+.+|||||+++++.++..+++.+|++++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            45689999999999999999999988764 345555433 45666777  459999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-----------------cCCCE
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS-----------------WGCPF  244 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~  244 (286)
                      |+|++++.+++++..|+..+.......++|+++|+||+|+.+   ....++.......                 .++++
T Consensus        99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc---cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            999999999999999988887644445899999999999973   3455555555442                 23579


Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy10504        245 IEASAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       245 ~~vSa~~~~gv~~l~~~i~~~i  266 (286)
                      ++|||++|.|++++|++|.+.+
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            9999999999999999998754

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.95  E-value=1.2e-29  Score=211.19  Aligned_cols=165  Identities=39%  Similarity=0.618  Sum_probs=135.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      .+.+||+++|++|+|||||+++|.++.+...+.++++ +.....+.+++..+.+.+|||||++++..++..+++.+|+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            4679999999999999999999999888776655554 566677888998888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|||++++.+++.+..|+..+... ...++|+++|+||+|+. ..+.+...+.+.++...+++++++||++|.|++++|+
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~  188 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLT-TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM  188 (199)
T ss_dssp             ECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC---CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCC-ccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            999999999999999999888663 33479999999999997 4455555567788889999999999999999999999


Q ss_pred             HHHHHhhc
Q psy10504        261 EIVREMNF  268 (286)
Q Consensus       261 ~i~~~i~~  268 (286)
                      +|.+.+.+
T Consensus       189 ~l~~~l~~  196 (199)
T 3l0i_B          189 TMAAEIKK  196 (199)
T ss_dssp             HHTTTTTT
T ss_pred             HHHHHHHH
Confidence            99988765

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.95  E-value=1.7e-27  Score=192.32  Aligned_cols=160  Identities=18%  Similarity=0.270  Sum_probs=127.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +.++|+++|++|+|||||++++.++.+.. +.+|.+ .....+.+++..  +.+|||||++++..++..+++.+|++++|
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~--~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   81 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG-FNVETVTYKNLK--FQVWDLGGLTSIRPYWRCYYSNTDAVIYV   81 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS-EEEEEEEETTEE--EEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc-cceEEEEECCEE--EEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence            56999999999999999999999887754 445543 445556666544  89999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-H----HHhcCCCEEEEeCCCCCcHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA-L----AQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-~----~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      +|++++.+++....|+..+.......++|+++|+||+|+.+..   ...+... +    ....+++++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (171)
T 1upt_A           82 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM---TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE  158 (171)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC---CHHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence            9999999999999888877664334589999999999997322   1122211 1    122346799999999999999


Q ss_pred             HHHHHHHHhhcC
Q psy10504        258 MFAEIVREMNFN  269 (286)
Q Consensus       258 l~~~i~~~i~~~  269 (286)
                      +|++|.+.+.+.
T Consensus       159 l~~~l~~~i~~~  170 (171)
T 1upt_A          159 AMEWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhhc
Confidence            999999998754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.95  E-value=1.7e-27  Score=197.13  Aligned_cols=158  Identities=16%  Similarity=0.223  Sum_probs=127.0

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ..+.+||+++|++|||||||++++.++.+. .+.+|.+. ....+.+++  +.+.+|||||++++..++..+++.+|+++
T Consensus        20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP-TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC-EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC-CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            346689999999999999999999998764 34455544 356677777  45899999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh------------cCCCEEEEe
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS------------WGCPFIEAS  248 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~vS  248 (286)
                      +|+|++++.+++.+..|+..+.......++|+++|+||+|+.+   ....++.......            .++++++||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  172 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCS  172 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECB
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC---CCCHHHHHHHhCCccccccccccccceEEEEEeE
Confidence            9999999999999999988887644446899999999999973   3444444444322            346799999


Q ss_pred             CCCCCcHHHHHHHHHHH
Q psy10504        249 AKNKTNVNEMFAEIVRE  265 (286)
Q Consensus       249 a~~~~gv~~l~~~i~~~  265 (286)
                      |++|.|++++|++|.+.
T Consensus       173 a~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          173 VVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTTBSHHHHHHHHHTT
T ss_pred             CCcCCCHHHHHHHHHhh
Confidence            99999999999999864

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.95  E-value=1.5e-27  Score=196.70  Aligned_cols=164  Identities=18%  Similarity=0.233  Sum_probs=129.1

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ...+.+||+++|++|+|||||+++|.++.+...+.+|++... ..+...+  +.+.+|||||++++..++..+++.+|++
T Consensus        18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (188)
T 1zd9_A           18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM-RKITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAI   94 (188)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE-EEEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeE-EEEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence            345689999999999999999999999888877777766433 2344444  4589999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----hcCCCEEEEeCCCCCc
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-----SWGCPFIEASAKNKTN  254 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~g  254 (286)
                      ++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+..   ...+......     ..++++++|||++|.|
T Consensus        95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  171 (188)
T 1zd9_A           95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL---DEKELIEKMNLSAIQDREICCYSISCKEKDN  171 (188)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC---CHHHHHHHhChhhhccCCeeEEEEECCCCCC
Confidence            9999999999999999988887764334589999999999997321   1222211111     1235789999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q psy10504        255 VNEMFAEIVREMNFN  269 (286)
Q Consensus       255 v~~l~~~i~~~i~~~  269 (286)
                      ++++|++|.+.+.+.
T Consensus       172 v~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          172 IDITLQWLIQHSKSR  186 (188)
T ss_dssp             HHHHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999987654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.95  E-value=3.9e-28  Score=205.32  Aligned_cols=168  Identities=26%  Similarity=0.476  Sum_probs=143.9

Q ss_pred             CCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCcc
Q psy10504         99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ  177 (286)
Q Consensus        99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d  177 (286)
                      ..+.+.+||+++|++|||||||+++++.+.+...+.++.+ +.....+..++..+.+.+|||||++.+..++..+++.+|
T Consensus        10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   89 (221)
T 3gj0_A           10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ   89 (221)
T ss_dssp             TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence            3455789999999999999999999888777777666664 555666778888889999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      ++++|||++++.+++.+..|+..+....  +++|+++|+||+|+.+..  .. .+...+++..++++++|||++|.|+++
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~--~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (221)
T 3gj0_A           90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRK--VK-AKSIVFHRKKNLQYYDISAKSNYNFEK  164 (221)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCS--SC-GGGCCHHHHHTCEEEECBGGGTBTTTH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCcccccc--cc-HHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999999988753  489999999999997322  22 245566777889999999999999999


Q ss_pred             HHHHHHHHhhcCCC
Q psy10504        258 MFAEIVREMNFNPE  271 (286)
Q Consensus       258 l~~~i~~~i~~~~~  271 (286)
                      +|++|.+.+...+.
T Consensus       165 l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          165 PFLWLARKLIGDPN  178 (221)
T ss_dssp             HHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHhCcc
Confidence            99999999877654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.95  E-value=7e-28  Score=197.43  Aligned_cols=161  Identities=17%  Similarity=0.211  Sum_probs=124.2

Q ss_pred             CCCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCcc
Q psy10504         98 NSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ  177 (286)
Q Consensus        98 ~~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d  177 (286)
                      .....+.+||+++|++|+|||||+++|.++.+ ..+.+|.+.. ...+.+++.  .+.+|||||++++..++..+++.+|
T Consensus        15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~~--~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (181)
T 2h17_A           15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINNT--RFLMWDIGGQESLRSSWNTYYTNTE   90 (181)
T ss_dssp             ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETTE--EEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred             cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECCE--EEEEEECCCCHhHHHHHHHHhccCC
Confidence            34455789999999999999999999999877 4455555422 345556664  4899999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----HhcCCCEEEEeCCCC
Q psy10504        178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA-----QSWGCPFIEASAKNK  252 (286)
Q Consensus       178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~  252 (286)
                      ++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.   ....+.....     ...++++++|||++|
T Consensus        91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  167 (181)
T 2h17_A           91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCALTG  167 (181)
T ss_dssp             EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC---CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence            99999999999999999998888776433458999999999999732   2223322222     123457999999999


Q ss_pred             CcHHHHHHHHHHH
Q psy10504        253 TNVNEMFAEIVRE  265 (286)
Q Consensus       253 ~gv~~l~~~i~~~  265 (286)
                      .|++++|++|.+.
T Consensus       168 ~gi~~l~~~l~~~  180 (181)
T 2h17_A          168 EGLCQGLEWMMSR  180 (181)
T ss_dssp             BTHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHhh
Confidence            9999999999864

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.95  E-value=3.2e-28  Score=201.79  Aligned_cols=162  Identities=17%  Similarity=0.292  Sum_probs=122.9

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ...+.+||+++|++|||||||++++.++.+.. +.+|.+ .....+..++.  .+.+|||||++++..++..+++.+|++
T Consensus        25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~~~--~~~i~Dt~G~~~~~~~~~~~~~~~d~i  100 (192)
T 2b6h_A           25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKNI--CFTVWDVGGQDKIRPLWRHYFQNTQGL  100 (192)
T ss_dssp             TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEETTE--EEEEEECC-----CTTHHHHHHTCCEE
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEECCE--EEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            34577999999999999999999999887764 344544 44455556554  489999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH-H----HhcCCCEEEEeCCCCCc
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL-A----QSWGCPFIEASAKNKTN  254 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-~----~~~~~~~~~vSa~~~~g  254 (286)
                      ++|+|++++.+++.+..|+..+......+++|+++|+||+|+.+..   ...+.... .    ...++++++|||++|.|
T Consensus       101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g  177 (192)
T 2b6h_A          101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM---PVSELTDKLGLQHLRSRTWYVQATCATQGTG  177 (192)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC---CHHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence            9999999999999999988887764444589999999999997321   11221111 1    11235699999999999


Q ss_pred             HHHHHHHHHHHhhc
Q psy10504        255 VNEMFAEIVREMNF  268 (286)
Q Consensus       255 v~~l~~~i~~~i~~  268 (286)
                      ++++|++|++.+.+
T Consensus       178 i~~l~~~l~~~i~~  191 (192)
T 2b6h_A          178 LYDGLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.95  E-value=3.8e-28  Score=200.54  Aligned_cols=164  Identities=24%  Similarity=0.284  Sum_probs=128.4

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCC-----------Ccc-ceEEEEE-EECCeEEEEEEEeCCCcccchh
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDP-----------TIE-DFYRKEI-EVDKAPCVLEILDTAGTEQFAS  167 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~-----------t~~-~~~~~~~-~~~~~~~~l~l~DtpG~~~~~~  167 (286)
                      ....+||+++|++|||||||++.+.+ .+...+.+           |.+ ++....+ ..++..+.+++|||||+++|..
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   89 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA   89 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence            35679999999999999999976654 44444332           221 1111112 4456677899999999999999


Q ss_pred             hhhhcccCccEEEEEEECCC------cccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC
Q psy10504        168 MRDLYIKNGQGFVVVYSLTN------HHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG  241 (286)
Q Consensus       168 ~~~~~~~~~d~vilv~d~~~------~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  241 (286)
                      ++..+++.+|++++|||+++      ..+++.+..|+..+.  ...+++|+++|+||+|+.+   .....+.+.+++..+
T Consensus        90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~  164 (198)
T 3t1o_A           90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPD---ALPVEMVRAVVDPEG  164 (198)
T ss_dssp             HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTT---CCCHHHHHHHHCTTC
T ss_pred             HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhccc---ccCHHHHHHHHHhcC
Confidence            99999999999999999994      456666666666652  2346899999999999973   366778888888899


Q ss_pred             C-CEEEEeCCCCCcHHHHHHHHHHHhhcCC
Q psy10504        242 C-PFIEASAKNKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       242 ~-~~~~vSa~~~~gv~~l~~~i~~~i~~~~  270 (286)
                      + +++++||++|.|++++|++|.+.+.+..
T Consensus       165 ~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~  194 (198)
T 3t1o_A          165 KFPVLEAVATEGKGVFETLKEVSRLVLARV  194 (198)
T ss_dssp             CSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence            8 9999999999999999999999887643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.95  E-value=2.7e-27  Score=194.30  Aligned_cols=160  Identities=21%  Similarity=0.275  Sum_probs=124.6

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .+.++|+++|++|||||||++++.++.+ ..+.+|.+ .....+..++.  .+.+|||||++.+..++..+++.+|++++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g-~~~~~~~~~~~--~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQG-FNIKSVQSQGF--KLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETT-EEEEEEEETTE--EEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCC-eEEEEEEECCE--EEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            4679999999999999999999998754 33445554 33445666654  48999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----HhcCCCEEEEeCCCCCcHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA-----QSWGCPFIEASAKNKTNVN  256 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~gv~  256 (286)
                      |+|++++.+++.+..|+..+.......++|+++|+||+|+.+..   ...+.....     ...++++++|||++|.|++
T Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA---PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC---CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            99999999999999888877654334589999999999997322   122221111     1124579999999999999


Q ss_pred             HHHHHHHHHhhc
Q psy10504        257 EMFAEIVREMNF  268 (286)
Q Consensus       257 ~l~~~i~~~i~~  268 (286)
                      ++|++|.+.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (181)
T 1fzq_A          167 DGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.95  E-value=5.9e-28  Score=198.95  Aligned_cols=162  Identities=17%  Similarity=0.229  Sum_probs=128.8

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .+.+||+++|++|+|||||++++..+.+.. +.+|.+ .....+..++..  +.+|||||++++..++..+++.+|++++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~--~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG-VNLETLQYKNIS--FEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT-CCEEEEEETTEE--EEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc-eEEEEEEECCEE--EEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            367999999999999999999999887754 445554 334556666544  8999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-HH----HhcCCCEEEEeCCCCCcHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA-LA----QSWGCPFIEASAKNKTNVN  256 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-~~----~~~~~~~~~vSa~~~~gv~  256 (286)
                      |+|++++.+++.+..|+..+......+++|+++|+||+|+.+...   ..+... +.    ...++++++|||++|.|++
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           96 VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS---EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC---HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            999999999999998888877654456899999999999973221   122111 11    1223579999999999999


Q ss_pred             HHHHHHHHHhhcCC
Q psy10504        257 EMFAEIVREMNFNP  270 (286)
Q Consensus       257 ~l~~~i~~~i~~~~  270 (286)
                      +++++|.+.+.+..
T Consensus       173 ~l~~~l~~~i~~~~  186 (189)
T 2x77_A          173 EGMDWLVERLREQG  186 (189)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999987643

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=4.2e-27  Score=192.39  Aligned_cols=160  Identities=16%  Similarity=0.260  Sum_probs=124.5

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .+.++|+++|++|||||||++++.++.+ ..+.+|.+ .....+.+++.  .+.+|||||++++..++..+++.+|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~-~~~~~~~~~~~--~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG-FNVETLSYKNL--KLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT-CCEEEEEETTE--EEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc-cceEEEEECCE--EEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4679999999999999999999998877 44555654 33455666664  48999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-----cCCCEEEEeCCCCCcHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS-----WGCPFIEASAKNKTNVN  256 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~vSa~~~~gv~  256 (286)
                      |+|++++.+++.+..|+..+.......++|+++|+||+|+.+.   ....+.......     .+++++++||++|.|++
T Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           92 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999998888776443568999999999999732   222333222211     23479999999999999


Q ss_pred             HHHHHHHHHhhc
Q psy10504        257 EMFAEIVREMNF  268 (286)
Q Consensus       257 ~l~~~i~~~i~~  268 (286)
                      +++++|.+.+.+
T Consensus       169 ~l~~~l~~~~~~  180 (183)
T 1moz_A          169 EGLDWLIDVIKE  180 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998865

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.95  E-value=1.2e-26  Score=207.40  Aligned_cols=165  Identities=29%  Similarity=0.507  Sum_probs=147.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      ..++|+++|++|+|||||++++.++.+...+.+|+.+.....+..++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  233 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC  233 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence            45899999999999999999999999988899999888888888999998899999999999999999999999999999


Q ss_pred             EECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcCC-CEEEEeC
Q psy10504        183 YSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWGC-PFIEASA  249 (286)
Q Consensus       183 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~vSa  249 (286)
                      ||++++.+++++. .|+..+....  +++|+++|+||+|+.+.           .+.+...+...+++..++ ++++|||
T Consensus       234 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          234 FSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            9999999999987 6777776643  38999999999999633           256778888889999996 9999999


Q ss_pred             CCCCcHHHHHHHHHHHhhcC
Q psy10504        250 KNKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       250 ~~~~gv~~l~~~i~~~i~~~  269 (286)
                      ++|.|++++|++|.+.+...
T Consensus       312 ~~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHHC-
T ss_pred             CCCcCHHHHHHHHHHHHhcC
Confidence            99999999999999988653

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.90  E-value=2.9e-29  Score=209.57  Aligned_cols=164  Identities=29%  Similarity=0.540  Sum_probs=140.5

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ..+.+||+++|++|+|||||+++|.++.+...+.+++.+.....+..++..+.+++|||||++++..++..+++.+|+++
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            35679999999999999999999999988888888888777777778888888899999999999999999999999999


Q ss_pred             EEEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcCC-CEEEE
Q psy10504        181 VVYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWGC-PFIEA  247 (286)
Q Consensus       181 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~v  247 (286)
                      +|||++++.+++++. .|+..+...  .+++|+++|+||+|+.+..           +.+...+...+++..+. ++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v  184 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
Confidence            999999999999987 677776653  2378999999999997432           13445566677777786 89999


Q ss_pred             eCCCCCcHHHHHHHHHHHh
Q psy10504        248 SAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       248 Sa~~~~gv~~l~~~i~~~i  266 (286)
                      ||++|.|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999998764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.94  E-value=6.8e-27  Score=194.18  Aligned_cols=167  Identities=13%  Similarity=0.159  Sum_probs=119.1

Q ss_pred             CCCCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEEC-CeEEEEEEEeCCCcccchhhh---hhc
Q psy10504         97 DNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVD-KAPCVLEILDTAGTEQFASMR---DLY  172 (286)
Q Consensus        97 ~~~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~---~~~  172 (286)
                      ....+.+.+||+++|++|||||||++++.+....................+. +..+.+++|||||+++|..+.   ..+
T Consensus        13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             -------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            3445567899999999999999999988775333211111111112222332 555679999999999988876   799


Q ss_pred             ccCccEEEEEEECCCc--ccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC------CCCCCHHHHHHHHH----hc
Q psy10504        173 IKNGQGFVVVYSLTNH--HTFQDIKQMKELITRVKGSERVPILLVANKLDLASH------QREVPTLDGQALAQ----SW  240 (286)
Q Consensus       173 ~~~~d~vilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~------~~~~~~~~~~~~~~----~~  240 (286)
                      ++++|++|+|||++++  ++++.+..|+..+..  ..+++|+++|+||+|+.+.      .+.+.....+.+++    ..
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  170 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL  170 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             cccCCEEEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence            9999999999999997  555666666666543  2458999999999998632      23344445666677    66


Q ss_pred             CCCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504        241 GCPFIEASAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       241 ~~~~~~vSa~~~~gv~~l~~~i~~~i  266 (286)
                      ++++++|||++ .|++++|+.+++.+
T Consensus       171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          171 HLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             CcceEEEEech-hhHHHHHHHHHHHh
Confidence            78999999999 99999999999865

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.94  E-value=2e-25  Score=185.73  Aligned_cols=164  Identities=35%  Similarity=0.546  Sum_probs=140.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..++|+++|++|||||||++++.+..+...+.++.+ ++....+.+++..+.+.+|||||++++..++..+++.++++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~   83 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   83 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence            468999999999999999999999888777666654 5556778889998889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |+|+++..+++++..|+..+... ...+.|+++|+||+|+. ..+.....+.+.++...++.++++||+++.|++++|++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~-~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~  161 (199)
T 2f9l_A           84 VYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  161 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccc-cccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999998888777653 33478999999999997 44555667788888889999999999999999999999


Q ss_pred             HHHHhhc
Q psy10504        262 IVREMNF  268 (286)
Q Consensus       262 i~~~i~~  268 (286)
                      |.+.+.+
T Consensus       162 l~~~~~~  168 (199)
T 2f9l_A          162 ILTEIYR  168 (199)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.94  E-value=6.6e-27  Score=192.35  Aligned_cols=165  Identities=21%  Similarity=0.326  Sum_probs=119.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCcc-ceEEEEEEE---CCeEEEEEEEeCCCcccchhhhhhcccCcc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIE-DFYRKEIEV---DKAPCVLEILDTAGTEQFASMRDLYIKNGQ  177 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~-~~~~~~~~~---~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d  177 (286)
                      .+||+++|++|||||||++++.+.  .+...+.+|++ ++....+..   ++..+.+.+|||+|+++|..++..++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  45555666654 333333332   234566999999999999999999999999


Q ss_pred             EEEEEEECCCc-ccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCC---HHHHHHHHHhcCCC----EEEEeC
Q psy10504        178 GFVVVYSLTNH-HTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVP---TLDGQALAQSWGCP----FIEASA  249 (286)
Q Consensus       178 ~vilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~----~~~vSa  249 (286)
                      ++++|+|++++ .+++.+..|+..+...  .++.|+++|+||+|+.+ .+...   ....+.+++..+++    ++++||
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVGTHLDVSD-EKQRKACMSKITKELLNKRGFPAIRDYHFVNA  158 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHH--CTTCEEEEEEECGGGCC-HHHHHHHHHHHHHHTTTCTTSCEEEEEEECCT
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhh--CCCCcEEEEEECCCccc-chhhHHHHHHHHHHHHHhcCCcchhheEEEec
Confidence            99999999997 5789999999888764  24789999999999972 22211   12234445556776    999999


Q ss_pred             CCCC-cHHHHHHHHHHHhhcCCC
Q psy10504        250 KNKT-NVNEMFAEIVREMNFNPE  271 (286)
Q Consensus       250 ~~~~-gv~~l~~~i~~~i~~~~~  271 (286)
                      +++. |++++++.|.+.+...+.
T Consensus       159 ~~~~~~~~~l~~~i~~~~~~~~~  181 (184)
T 2zej_A          159 TEESDALAKLRKTIINESLNFKI  181 (184)
T ss_dssp             TSCCHHHHHHHHHHHHHHHCC--
T ss_pred             ccCchhHHHHHHHHHHHHhcccc
Confidence            9996 999999999998876543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.94  E-value=1.5e-25  Score=182.15  Aligned_cols=162  Identities=21%  Similarity=0.247  Sum_probs=121.6

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ..+.++|+++|++|+|||||+++|.++.+...+.++++ +.....+..++..  +.+|||||++++..++..+++.+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            34678999999999999999999999888766554433 4445567777766  78999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc-------C--CCEEEEeCC
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW-------G--CPFIEASAK  250 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~--~~~~~vSa~  250 (286)
                      ++|+|++++...+....    +... ...++|+++|+||+|+.+.    ...+........       +  ++++++||+
T Consensus        83 i~v~d~~~~~~~~~~~~----l~~~-~~~~~p~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (178)
T 2lkc_A           83 ILVVAADDGVMPQTVEA----INHA-KAANVPIIVAINKMDKPEA----NPDRVMQELMEYNLVPEEWGGDTIFCKLSAK  153 (178)
T ss_dssp             EEEEETTCCCCHHHHHH----HHHH-GGGSCCEEEEEETTTSSCS----CHHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred             EEEEECCCCCcHHHHHH----HHHH-HhCCCCEEEEEECccCCcC----CHHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence            99999998654333322    2221 1237899999999999732    122222222221       2  479999999


Q ss_pred             CCCcHHHHHHHHHHHhhcCCCCc
Q psy10504        251 NKTNVNEMFAEIVREMNFNPEKD  273 (286)
Q Consensus       251 ~~~gv~~l~~~i~~~i~~~~~~~  273 (286)
                      +|.|++++|++|.+.+...+.+.
T Consensus       154 ~~~gv~~l~~~l~~~~~~~~~~~  176 (178)
T 2lkc_A          154 TKEGLDHLLEMILLVSEMEELKA  176 (178)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTTTS
T ss_pred             CCCCHHHHHHHHHHhhhhhcccc
Confidence            99999999999999887655443

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.93  E-value=9.7e-26  Score=182.11  Aligned_cols=154  Identities=18%  Similarity=0.240  Sum_probs=115.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCc-cCCCccceEEEEEEECCeEEEEEEEeCCCcccch------hhhhhccc-
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEK-YDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA------SMRDLYIK-  174 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~------~~~~~~~~-  174 (286)
                      +.++|+++|++|+|||||+++|.+..+... +++++.+.....+.+++..  +.+|||||++++.      .+...+++ 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK--FKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEE--EEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcE--EEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            468999999999999999999998765433 3333345555666677654  8999999998875      34456665 


Q ss_pred             -CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCC
Q psy10504        175 -NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT  253 (286)
Q Consensus       175 -~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~  253 (286)
                       ++|++++|+|+++..   ....|+..+..    .++|+++|+||+|+.. .+.+.. +.+.+++.++++++++||++|.
T Consensus        80 ~~~~~~i~v~D~~~~~---~~~~~~~~~~~----~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~~SA~~~~  150 (165)
T 2wji_A           80 EKPDLVVNIVDATALE---RNLYLTLQLME----MGANLLLALNKMDLAK-SLGIEI-DVDKLEKILGVKVVPLSAAKKM  150 (165)
T ss_dssp             HCCSEEEEEEETTCHH---HHHHHHHHHHH----TTCCEEEEEECHHHHH-HTTCCC-CHHHHHHHHTSCEEECBGGGTB
T ss_pred             CCCCEEEEEecCCchh---HhHHHHHHHHh----cCCCEEEEEEchHhcc-ccChhh-HHHHHHHHhCCCEEEEEcCCCC
Confidence             899999999998753   34456666554    2789999999999862 222222 3567778888999999999999


Q ss_pred             cHHHHHHHHHHHhh
Q psy10504        254 NVNEMFAEIVREMN  267 (286)
Q Consensus       254 gv~~l~~~i~~~i~  267 (286)
                      |++++|++|.+.+.
T Consensus       151 ~v~~l~~~l~~~~~  164 (165)
T 2wji_A          151 GIEELKKAISIAVK  164 (165)
T ss_dssp             SHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.93  E-value=1e-25  Score=189.21  Aligned_cols=161  Identities=18%  Similarity=0.256  Sum_probs=116.0

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCe-EEEEEEEeCCCcccchh-hhhhcccCccEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKA-PCVLEILDTAGTEQFAS-MRDLYIKNGQGF  179 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~l~DtpG~~~~~~-~~~~~~~~~d~v  179 (286)
                      .+.+||+++|++|+|||||+++|+++.+...+.++..+...  +.+++. .+.+++|||||++++.. ++..+++.+|++
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            35689999999999999999999999888877766544433  556643 46699999999999998 888999999999


Q ss_pred             EEEEECCCcc-cHHHHHHHHHHHHHH--hCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH---H---------------
Q psy10504        180 VVVYSLTNHH-TFQDIKQMKELITRV--KGSERVPILLVANKLDLASHQREVPTLDGQALA---Q---------------  238 (286)
Q Consensus       180 ilv~d~~~~~-s~~~~~~~~~~i~~~--~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~---~---------------  238 (286)
                      ++|+|+++.. ++.....++..+...  ...+++|+++|+||+|+.+....  ....+.+.   .               
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~s~~~~  160 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA--KLIQQQLEKELNTLRVTRSAAPSTLDS  160 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH--HHHHHHHHHHHHHHHHHCC--------
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH--HHHHHHHHHHHHHHhccchhccccccC
Confidence            9999999853 455555544443322  13457899999999999733221  11111111   0               


Q ss_pred             ------------------hc--CCCEEEEeCCCC------CcHHHHHHHHHHHh
Q psy10504        239 ------------------SW--GCPFIEASAKNK------TNVNEMFAEIVREM  266 (286)
Q Consensus       239 ------------------~~--~~~~~~vSa~~~------~gv~~l~~~i~~~i  266 (286)
                                        ..  +++|++|||++|      .|++++|++|.+.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence                              11  567999999999      99999999998753

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.93  E-value=1.1e-25  Score=202.12  Aligned_cols=163  Identities=16%  Similarity=0.271  Sum_probs=122.7

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ...+.+||+|+|++|||||||+++|.++.+...+ +|.+ .....+...+.  .+++|||||++.|..++..+++.+|++
T Consensus       161 ~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~-~~~~~~~~~~~--~l~i~Dt~G~~~~~~~~~~~~~~ad~v  236 (329)
T 3o47_A          161 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG-FNVETVEYKNI--SFTVWDVGGQDKIRPLWRHYFQNTQGL  236 (329)
T ss_dssp             --CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETT-EEEEEEEETTE--EEEEEECC-----CCSHHHHHTTEEEE
T ss_pred             cccCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccc-eEEEEEecCcE--EEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            3456789999999999999999999998876554 3433 33444555554  499999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----hcCCCEEEEeCCCCCc
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-----SWGCPFIEASAKNKTN  254 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~g  254 (286)
                      |+|||++++.+++.+..|+..+......+++|+++|+||+|+.+...   ..+......     ..++++++|||++|.|
T Consensus       237 ilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~vSAk~g~g  313 (329)
T 3o47_A          237 IFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRHRNWYIQATCATSGDG  313 (329)
T ss_dssp             EEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTCTTCCSSCEEEEECBTTTTBT
T ss_pred             EEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC---HHHHHHHhchhhhhcCCCEEEEEECCCCcC
Confidence            99999999999999998888777655556899999999999973221   222211111     1235699999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q psy10504        255 VNEMFAEIVREMNFN  269 (286)
Q Consensus       255 v~~l~~~i~~~i~~~  269 (286)
                      ++++|++|.+.+.+.
T Consensus       314 i~el~~~l~~~l~~~  328 (329)
T 3o47_A          314 LYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.93  E-value=1.9e-24  Score=178.90  Aligned_cols=163  Identities=35%  Similarity=0.557  Sum_probs=141.0

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ...++|+++|++|||||||++++.+..+...+.+|++ ++....+.+++..+.+.+||++|++++..++..+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            3569999999999999999999999888777777665 445677888998888899999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|+|+++..+++++..|+..+... ...+.|+++++||+|+. ..+.....+.+.++...++.++++||+++.|++++|+
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~-~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~  184 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ  184 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999988888776653 23478999999999997 4445667778889999999999999999999999999


Q ss_pred             HHHHHh
Q psy10504        261 EIVREM  266 (286)
Q Consensus       261 ~i~~~i  266 (286)
                      +|.+.+
T Consensus       185 ~l~~~i  190 (191)
T 1oix_A          185 TILTEI  190 (191)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998865

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.93  E-value=4.8e-26  Score=197.27  Aligned_cols=165  Identities=24%  Similarity=0.366  Sum_probs=125.0

Q ss_pred             CCcceEEEEEECCC---------CCcHHHHHHHHhc---CcCCCccCCCc-c-ceEEEE--------------EEECCeE
Q psy10504        100 FTMREFKVVVLGSG---------GVGKSALTVQFVS---GCFMEKYDPTI-E-DFYRKE--------------IEVDKAP  151 (286)
Q Consensus       100 ~~~~~~kV~ivG~~---------~~GKTSLi~~l~~---~~~~~~~~~t~-~-~~~~~~--------------~~~~~~~  151 (286)
                      ...+.+||+++|++         |||||||+++|.+   +.+...+.+++ + ++....              ...++..
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            34567999999999         9999999999999   56666666664 2 211111              1245667


Q ss_pred             EEEEEEe-----------------------CCCcccchhhhhhccc---------------------CccEEEEEEECCC
Q psy10504        152 CVLEILD-----------------------TAGTEQFASMRDLYIK---------------------NGQGFVVVYSLTN  187 (286)
Q Consensus       152 ~~l~l~D-----------------------tpG~~~~~~~~~~~~~---------------------~~d~vilv~d~~~  187 (286)
                      +.+.+||                       ++|+++|..++..+++                     ++|++|+|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            7799999                       7788888888888888                     7999999999999


Q ss_pred             c--ccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-cCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504        188 H--HTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS-WGCPFIEASAKNKTNVNEMFAEIVR  264 (286)
Q Consensus       188 ~--~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~gv~~l~~~i~~  264 (286)
                      +  .+++.+..|+..+......+++|+++|+||+|+. ..+.+  .+.+.+++. .+++++++||++|.|++++|++|++
T Consensus       175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~-~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~  251 (255)
T 3c5h_A          175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG-VERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ  251 (255)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB-CHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc-ccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            8  9999999999888765333579999999999996 22222  455666665 4789999999999999999999998


Q ss_pred             Hhh
Q psy10504        265 EMN  267 (286)
Q Consensus       265 ~i~  267 (286)
                      .+.
T Consensus       252 ~l~  254 (255)
T 3c5h_A          252 LID  254 (255)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.92  E-value=5.2e-25  Score=195.80  Aligned_cols=163  Identities=18%  Similarity=0.280  Sum_probs=129.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccc-----hhhhhhcccC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF-----ASMRDLYIKN  175 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~-----~~~~~~~~~~  175 (286)
                      ..+||+++|++|||||||++++.++  .+...+.+++.+.....+.+++ .+.+.+|||||++++     ..++..++++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   80 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQM   80 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence            4689999999999999999999987  4444344444455555566544 466999999999988     7788899999


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCC-CCC----CCHHHHHHHHHhcC---CCEEE
Q psy10504        176 GQGFVVVYSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLDLASH-QRE----VPTLDGQALAQSWG---CPFIE  246 (286)
Q Consensus       176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~-~~~----~~~~~~~~~~~~~~---~~~~~  246 (286)
                      +|++++|||++++.+++++..|...+.... ..+++|+++|+||+|+.+. .+.    ....+.+.+++.++   +++++
T Consensus        81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~  160 (307)
T 3r7w_A           81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP  160 (307)
T ss_dssp             CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            999999999999999999987766554432 2468999999999999731 222    44467778888887   78999


Q ss_pred             EeCCCCCcHHHHHHHHHHHhh
Q psy10504        247 ASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       247 vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      +||++ .|+.++|..+++.+.
T Consensus       161 tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          161 TSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             CCTTS-SHHHHHHHHHHHTTC
T ss_pred             eeecC-ChHHHHHHHHHHHHc
Confidence            99999 899999999988654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.92  E-value=3.6e-24  Score=181.97  Aligned_cols=162  Identities=12%  Similarity=0.121  Sum_probs=115.8

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCC-CccCCCccceEEEEEEECCeEEEEEEEeCCCcc------c----chhhhh
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE------Q----FASMRD  170 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~------~----~~~~~~  170 (286)
                      .+.++|+++|++|||||||+++|+++.+. .....++.+.....+..++..  +.+|||||+.      .    +..+ .
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~-~  103 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNK--YQIIDTPGLLDRAFENRNTIEMTTI-T  103 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEE--EEEEECTTTTTSCGGGCCHHHHHHH-H
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCe--EEEEECCCCcCcccchhhhHHHHHH-H
Confidence            46799999999999999999999998764 233344444444555556544  8999999983      3    2222 3


Q ss_pred             hcccCccEEEEEEECCCcccHHH--HHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHH---HHHHHHHhcC--CC
Q psy10504        171 LYIKNGQGFVVVYSLTNHHTFQD--IKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL---DGQALAQSWG--CP  243 (286)
Q Consensus       171 ~~~~~~d~vilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~--~~  243 (286)
                      .++..+|++++|+|++++.+++.  ...|+..+..  ..+++|+++|+||+|+.+ .+.+...   ....++...+  ++
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~--~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~  180 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKS--VFSNKSIVIGFNKIDKCN-MDSLSIDNKLLIKQILDNVKNPIK  180 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHT--CC-CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCCSCEE
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHH--hhcCCcEEEEEeCcccCC-chhhHHHHHHHHHHHHHhcCCCce
Confidence            45788999999999999877652  2344444443  234799999999999973 3444433   4556666666  88


Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504        244 FIEASAKNKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       244 ~~~vSa~~~~gv~~l~~~i~~~i~~~  269 (286)
                      +++|||++|.|++++|++|++.+.+.
T Consensus       181 ~~~~SA~~g~gi~~l~~~l~~~i~~~  206 (228)
T 2qu8_A          181 FSSFSTLTGVGVEQAKITACELLKND  206 (228)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEEEecccCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999988653

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.92  E-value=5.7e-25  Score=179.08  Aligned_cols=156  Identities=22%  Similarity=0.310  Sum_probs=117.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh--------hhhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM--------RDLY  172 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~--------~~~~  172 (286)
                      ...+|+++|++|+|||||+++|.+..+  ...+++++.+.....+.+++..  +.+|||||++++...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHH
Confidence            458999999999999999999998753  4556667777778888888866  789999998754221        1245


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504        173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK  252 (286)
Q Consensus       173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~  252 (286)
                      ++.+|++++|+|++++.+++. ..|+..+... ...++|+++|+||+|+.+....        ++...+.+++++||++|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~--------~~~~~~~~~~~~SA~~g  150 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETLG--------MSEVNGHALIRLSARTG  150 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCCE--------EEEETTEEEEECCTTTC
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchhh--------hhhccCCceEEEeCCCC
Confidence            789999999999999888763 4666666653 3347999999999998632211        11124578999999999


Q ss_pred             CcHHHHHHHHHHHhhcCC
Q psy10504        253 TNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       253 ~gv~~l~~~i~~~i~~~~  270 (286)
                      .|++++|++|.+.+....
T Consensus       151 ~gv~~l~~~l~~~~~~~~  168 (172)
T 2gj8_A          151 EGVDVLRNHLKQSMGFDT  168 (172)
T ss_dssp             TTHHHHHHHHHHHC----
T ss_pred             CCHHHHHHHHHHHhhhcc
Confidence            999999999999876544

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.92  E-value=1.8e-24  Score=172.79  Aligned_cols=150  Identities=22%  Similarity=0.262  Sum_probs=109.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCccc-------chhhhhhcccC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ-------FASMRDLYIKN  175 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~-------~~~~~~~~~~~  175 (286)
                      +||+++|++|+|||||++++.++.+  ....++++.+.....+..++..  +.+|||||+..       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGR--FLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEE--EEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCce--EEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            6899999999999999999998764  3445555556667777777775  88999999887       34456678899


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCCCc
Q psy10504        176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTN  254 (286)
Q Consensus       176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~g  254 (286)
                      +|++++|+|++++.+...  .++......   .++|+++|+||+|+.+..     .+...+. ..+. +++++||++|.|
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~-----~~~~~~~-~~~~~~~~~~Sa~~~~g  148 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE-----LYLGPLY-GLGFGDPIPTSSEHARG  148 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG-----GGCGGGG-GGSSCSCEECBTTTTBS
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch-----HhHHHHH-hCCCCCeEEEecccCCC
Confidence            999999999998654433  222222221   378999999999997331     2223334 5666 899999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy10504        255 VNEMFAEIVREMN  267 (286)
Q Consensus       255 v~~l~~~i~~~i~  267 (286)
                      ++++|++|.+.++
T Consensus       149 v~~l~~~l~~~l~  161 (161)
T 2dyk_A          149 LEELLEAIWERLP  161 (161)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHhCc
Confidence            9999999998763

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.92  E-value=8.9e-24  Score=187.90  Aligned_cols=165  Identities=16%  Similarity=0.154  Sum_probs=132.9

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCC--CccCCCccceEEEEEEEC-CeEEEEEEEeCCCcccch----------
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFM--EKYDPTIEDFYRKEIEVD-KAPCVLEILDTAGTEQFA----------  166 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~l~l~DtpG~~~~~----------  166 (286)
                      .+++.-.|+++|++|||||||+|+|.+..+.  ...++++..........+ +.+  +.||||||+.++.          
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~--i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQ--IIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEE--EEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCe--EEEEECcCCCccccchhHHHHHH
Confidence            4556789999999999999999999998764  455566666666666666 555  8899999986544          


Q ss_pred             hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--CCE
Q psy10504        167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG--CPF  244 (286)
Q Consensus       167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~  244 (286)
                      .....+++.+|++++|+|++++.+.++...|+..+..    .++|+++|+||+|+. ..+.......+.+.+..+  .++
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~-~~~~~~~~~~~~l~~~~~~~~~i  158 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKI-GPAKNVLPLIDEIHKKHPELTEI  158 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGS-SSGGGGHHHHHHHHHHCTTCCCE
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCC-CCHHHHHHHHHHHHHhccCCCeE
Confidence            4567788999999999999999888887777776665    278999999999996 234444556677777775  889


Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhhcCCC
Q psy10504        245 IEASAKNKTNVNEMFAEIVREMNFNPE  271 (286)
Q Consensus       245 ~~vSa~~~~gv~~l~~~i~~~i~~~~~  271 (286)
                      +++||++|.|+++++++|.+.+++.+.
T Consensus       159 ~~vSA~~g~gv~~L~~~l~~~l~~~~~  185 (308)
T 3iev_A          159 VPISALKGANLDELVKTILKYLPEGEP  185 (308)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHSCBCCC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhCccCCC
Confidence            999999999999999999999987654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.91  E-value=2e-24  Score=177.27  Aligned_cols=159  Identities=18%  Similarity=0.249  Sum_probs=122.2

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCc-cCCCccceEEEEEEECCeEEEEEEEeCCCcccch------hhhhhcc
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEK-YDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA------SMRDLYI  173 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~------~~~~~~~  173 (286)
                      +++.++|+++|++|||||||+++|.+..+... +++++.+.....+..++..  +.+|||||++.+.      .++..++
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK--FKVVDLPGVYSLTANSIDEIIARDYI   81 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE--EEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE--EEEEECCCcCccccccHHHHHHHHHH
Confidence            35779999999999999999999998655333 3333445566667777654  8999999998875      3456666


Q ss_pred             c--CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504        174 K--NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN  251 (286)
Q Consensus       174 ~--~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  251 (286)
                      .  .+|++++|+|+++   ++....|+..+..    .+.|+++|+||+|+... +.+. ...+.+++..+++++++||++
T Consensus        82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~  152 (188)
T 2wjg_A           82 INEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKS-LGIE-IDVDKLEKILGVKVVPLSAAK  152 (188)
T ss_dssp             HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHH-TTCC-CCHHHHHHHHTSCEEECBGGG
T ss_pred             hccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhcccc-ccch-HHHHHHHHHhCCCeEEEEecC
Confidence            4  4999999999875   4555666666554    37899999999998622 2222 345677888899999999999


Q ss_pred             CCcHHHHHHHHHHHhhcCC
Q psy10504        252 KTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i~~~~  270 (286)
                      +.|++++|+++.+.+.+..
T Consensus       153 ~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          153 KMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             TBSHHHHHHHHHHHHTTC-
T ss_pred             CCCHHHHHHHHHHHHHhcc
Confidence            9999999999999987765

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.91  E-value=9.4e-25  Score=179.27  Aligned_cols=159  Identities=21%  Similarity=0.265  Sum_probs=118.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCC-----------cccchhhhhhcc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG-----------TEQFASMRDLYI  173 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG-----------~~~~~~~~~~~~  173 (286)
                      +||+++|++|+|||||++++.++.+...+.++++. ....+...    .+.+|||||           ++.+..++..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~-~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTR-KIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTT-SCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccc-eeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence            68999999999999999999998887666555432 22233333    388999999           677788888888


Q ss_pred             cC-ccEEEEEEECCCcccHHHH-HHHHHH--------HHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCC
Q psy10504        174 KN-GQGFVVVYSLTNHHTFQDI-KQMKEL--------ITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCP  243 (286)
Q Consensus       174 ~~-~d~vilv~d~~~~~s~~~~-~~~~~~--------i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  243 (286)
                      +. ++++++|+++.|..+++++ ..|...        +.......++|+++|+||+|+.+. +   ....+.+++..+.+
T Consensus        77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN-V---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC-H---HHHHHHHHHHHTCC
T ss_pred             HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc-H---HHHHHHHHHHhhhh
Confidence            87 8877777887777777776 445432        222222247999999999999732 2   45677788888764


Q ss_pred             -------EEEEeCCCCCcHHHHHHHHHHHhhcCCCC
Q psy10504        244 -------FIEASAKNKTNVNEMFAEIVREMNFNPEK  272 (286)
Q Consensus       244 -------~~~vSa~~~~gv~~l~~~i~~~i~~~~~~  272 (286)
                             +++|||++|.|++++|++|.+.+.+...+
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~  188 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR  188 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence                   79999999999999999999998775543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.91  E-value=2.3e-24  Score=177.99  Aligned_cols=156  Identities=18%  Similarity=0.270  Sum_probs=107.4

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceE-EEEEEECCeEEEEEEEeCCC----------cccchhhhh
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFY-RKEIEVDKAPCVLEILDTAG----------TEQFASMRD  170 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~DtpG----------~~~~~~~~~  170 (286)
                      ...++|+++|++|+|||||+++|.++.+...+.++.+... ......++ .  +.+|||||          ++.+..++.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~   97 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND-E--LHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT-T--EEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC-c--EEEEECCCCCccccCHHHHHHHHHHHH
Confidence            4679999999999999999999999875554444333111 22233333 3  88999999          777888888


Q ss_pred             hcccCc---cEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH----hcCCC
Q psy10504        171 LYIKNG---QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ----SWGCP  243 (286)
Q Consensus       171 ~~~~~~---d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~  243 (286)
                      .+++.+   |++++|+|++++.+..+.. ++..+..    .++|+++|+||+|+.+ .+.... ..+.+.+    ..+.+
T Consensus        98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~~  170 (195)
T 1svi_A           98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIP-KGKWDK-HAKVVRQTLNIDPEDE  170 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSC-GGGHHH-HHHHHHHHHTCCTTSE
T ss_pred             HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCC-hHHHHH-HHHHHHHHHcccCCCc
Confidence            888777   9999999999988777643 2222222    3789999999999973 222211 1122222    23578


Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        244 FIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       244 ~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      ++++||++|.|++++|++|.+.+.
T Consensus       171 ~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          171 LILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             eEEEEccCCCCHHHHHHHHHHHhc
Confidence            999999999999999999998775

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.90  E-value=1.3e-23  Score=172.94  Aligned_cols=161  Identities=17%  Similarity=0.166  Sum_probs=111.0

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCC----------cccchhhh
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG----------TEQFASMR  169 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG----------~~~~~~~~  169 (286)
                      +....++|+++|++|+|||||++++.+..+.. ..++.+..........+..  +.+|||||          ++.+..++
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~~--~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (195)
T 3pqc_A           19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNSK--YYFVDLPGYGYAKVSKKERMLWKRLV   95 (195)
T ss_dssp             CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETTT--EEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECCc--EEEEECCCCccccCChhhHHHHHHHH
Confidence            34567899999999999999999999976332 2222221112222222333  77999999          66777777


Q ss_pred             hhcccCc---cEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHhcC-CCE
Q psy10504        170 DLYIKNG---QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ-REVPTLDGQALAQSWG-CPF  244 (286)
Q Consensus       170 ~~~~~~~---d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~  244 (286)
                      ..+++.+   |++++|+|++++.+..... +...+..    .++|+++|+||+|+.+.. ......+........+ +++
T Consensus        96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  170 (195)
T 3pqc_A           96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLM-MVEWMKS----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI  170 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred             HHHHhcCcCceEEEEEecCCCCCCHHHHH-HHHHHHH----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce
Confidence            7777665   9999999998865544332 2222222    178999999999997322 2222334444555534 799


Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        245 IEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       245 ~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      +++||++|.|++++|++|.+.+.+
T Consensus       171 ~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          171 IPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             EEEecCCCCCHHHHHHHHHHHhhc
Confidence            999999999999999999998864

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.90  E-value=2.3e-23  Score=180.72  Aligned_cols=156  Identities=16%  Similarity=0.188  Sum_probs=120.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh------hhhcc-
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM------RDLYI-  173 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~------~~~~~-  173 (286)
                      .+.++|+++|++|+|||||+++|.+..+ ...+++++.+.....+...+..  +.+|||||+..+...      ...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYT--INLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE--EEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeE--EEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            4679999999999999999999998765 3445555556566666666654  899999999887653      35555 


Q ss_pred             -cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504        174 -KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK  252 (286)
Q Consensus       174 -~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~  252 (286)
                       ..+|++++|+|+++.++.   ..|...+..    .++|+++|+||+|+.+ .+... .+...+++.++++++++||++|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~-~~~i~-~~~~~l~~~lg~~vi~~SA~~g  151 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAK-KTGMK-IDRYELQKHLGIPVVFTSSVTG  151 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHH-HTTCC-BCHHHHHHHHCSCEEECCTTTC
T ss_pred             hcCCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCC-ccchH-HHHHHHHHHcCCCEEEEEeeCC
Confidence             589999999999986533   234444443    2789999999999862 22222 2367788889999999999999


Q ss_pred             CcHHHHHHHHHHHhhc
Q psy10504        253 TNVNEMFAEIVREMNF  268 (286)
Q Consensus       253 ~gv~~l~~~i~~~i~~  268 (286)
                      .|++++|+++.+.+..
T Consensus       152 ~gi~el~~~i~~~~~~  167 (258)
T 3a1s_A          152 EGLEELKEKIVEYAQK  167 (258)
T ss_dssp             TTHHHHHHHHHHHHHS
T ss_pred             cCHHHHHHHHHHHhhc
Confidence            9999999999998763

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.90  E-value=1.3e-24  Score=192.95  Aligned_cols=155  Identities=17%  Similarity=0.205  Sum_probs=114.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCC---ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh---hhhhcccCccEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFME---KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS---MRDLYIKNGQGF  179 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~---~~~~~~~~~d~v  179 (286)
                      ||+++|+.|||||||++++.++.+..   .+.+|++.... .  ++ ..+.+++||||||++|..   ++..|+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~-~--v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~   76 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE-H--FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL   76 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE-E--EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE-E--Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence            68999999999999999888764432   24455543222 2  22 346699999999999974   468999999999


Q ss_pred             EEEEECCCcccHHHHHHH---HHHHHHHhCCCCCcEEEEEeCCCCCCCC------CCCCHHHHHHHHHh----cCCCEEE
Q psy10504        180 VVVYSLTNHHTFQDIKQM---KELITRVKGSERVPILLVANKLDLASHQ------REVPTLDGQALAQS----WGCPFIE  246 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~---~~~i~~~~~~~~~piivv~nK~Dl~~~~------~~~~~~~~~~~~~~----~~~~~~~  246 (286)
                      |+|||++++ ..+....|   +..+..  ..+++|+++++||+|+.+..      +.+...+.+.+++.    .+++|++
T Consensus        77 IlV~Ditd~-~~~~~~~l~~~l~~~~~--~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e  153 (331)
T 3r7w_B           77 VYVIDSQDE-YINAITNLAMIIEYAYK--VNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL  153 (331)
T ss_dssp             EEECCCSSC-TTHHHHHHHHHHHHHHH--HCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred             EEEEECCch-HHHHHHHHHHHHHHHhh--cCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence            999999998 33333333   333333  24689999999999997332      34555556666664    5789999


Q ss_pred             EeCCCCCcHHHHHHHHHHHhhc
Q psy10504        247 ASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       247 vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      +||++ .+|.++|..|++.+..
T Consensus       154 TSAkd-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          154 TSIFD-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             CCSSS-SHHHHHHHHHHTTSST
T ss_pred             eccCC-CcHHHHHHHHHHHHHh
Confidence            99998 6999999999998754

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.90  E-value=2.1e-23  Score=198.72  Aligned_cols=165  Identities=16%  Similarity=0.241  Sum_probs=123.2

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEE---------EECCeEEEEEEEeCCCcccchhhhhh
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEI---------EVDKAPCVLEILDTAGTEQFASMRDL  171 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~---------~~~~~~~~l~l~DtpG~~~~~~~~~~  171 (286)
                      +.+.+||+++|.+|||||||++++.++.+...+.+|++.......         ..++..+.+.+|||||++.+..++..
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            457899999999999999999999999888877777764444321         12233466999999999999999999


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504        172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN  251 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  251 (286)
                      +++.+|++++|+|+++.   +....|+..+....  +++|+++|+||+|+. ..+.+...+.+......+++++++||++
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~vSA~~  191 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDEN-PSYNIEQKKINERFPAIENRFHRISCKN  191 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTC-TTCCCCHHHHHHHCGGGTTCEEECCC--
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCcc-cccccCHHHHHHHHHhcCCceEEEecCc
Confidence            99999999999999765   55677888887753  378999999999997 4555667777888888889999999999


Q ss_pred             CCcHHHHHHHHHHHhhcCCC
Q psy10504        252 KTNVNEMFAEIVREMNFNPE  271 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i~~~~~  271 (286)
                      |.|+++++++|.+.+.+.+.
T Consensus       192 g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          192 GDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             ---CTTHHHHHHHHHTCTTS
T ss_pred             ccCHHHHHHHHHHHHhcccc
Confidence            99999999999999987654

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.89  E-value=1.7e-23  Score=182.86  Aligned_cols=154  Identities=16%  Similarity=0.217  Sum_probs=115.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCc-CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch------hhhhhccc-
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGC-FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA------SMRDLYIK-  174 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~------~~~~~~~~-  174 (286)
                      +.++|+++|++|||||||+++|.+.. ++..+++++.+.....+  .. ...+.+|||||+..+.      .++..++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            35899999999999999999999865 45556555544444443  32 3348999999998876      35566665 


Q ss_pred             -CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCC
Q psy10504        175 -NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT  253 (286)
Q Consensus       175 -~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~  253 (286)
                       .+|++++|+|+++.++   ...|...+..    .++|+++|+||+|+... +... .....+++.++++++++||++|.
T Consensus        79 ~~~d~vi~V~D~t~~e~---~~~~~~~l~~----~~~p~ilv~NK~Dl~~~-~~~~-~~~~~l~~~lg~~vi~~SA~~g~  149 (272)
T 3b1v_A           79 QRADSILNVVDATNLER---NLYLTTQLIE----TGIPVTIALNMIDVLDG-QGKK-INVDKLSYHLGVPVVATSALKQT  149 (272)
T ss_dssp             TCCSEEEEEEEGGGHHH---HHHHHHHHHH----TCSCEEEEEECHHHHHH-TTCC-CCHHHHHHHHTSCEEECBTTTTB
T ss_pred             CCCCEEEEEecCCchHh---HHHHHHHHHh----cCCCEEEEEEChhhCCc-CCcH-HHHHHHHHHcCCCEEEEEccCCC
Confidence             6999999999988543   3345445544    37899999999998622 2222 34567788889999999999999


Q ss_pred             cHHHHHHHHHHHhhc
Q psy10504        254 NVNEMFAEIVREMNF  268 (286)
Q Consensus       254 gv~~l~~~i~~~i~~  268 (286)
                      |++++|++|.+.+..
T Consensus       150 gi~el~~~i~~~~~~  164 (272)
T 3b1v_A          150 GVDQVVKKAAHTTTS  164 (272)
T ss_dssp             SHHHHHHHHHHSCTT
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999987654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.89  E-value=9.1e-24  Score=184.85  Aligned_cols=156  Identities=17%  Similarity=0.277  Sum_probs=118.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCC-CccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh----------hhhh
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS----------MRDL  171 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~----------~~~~  171 (286)
                      +.++|+++|.+|+|||||+|+|.+..+. ..+++++.+.....+...+..  +.+|||||+..+..          +...
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQ--VTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCE--EEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCc--eEEEECcCCCccccccccCCHHHHHHHH
Confidence            5689999999999999999999987653 344555556667777777766  78899999988763          2233


Q ss_pred             cc--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC
Q psy10504        172 YI--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASA  249 (286)
Q Consensus       172 ~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa  249 (286)
                      ++  +.+|++++|+|+++.+..   ..+...+...    ++|+++|+||+|+.+.. .. ......+.+.++++++++||
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~---~~~~~~l~~~----~~p~ivv~NK~Dl~~~~-~~-~~~~~~l~~~lg~~~i~~SA  150 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERN---LYLTLQLLEL----GIPCIVALNMLDIAEKQ-NI-RIEIDALSARLGCPVIPLVS  150 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHH---HHHHHHHHHH----TCCEEEEEECHHHHHHT-TE-EECHHHHHHHHTSCEEECCC
T ss_pred             HHhhcCCCEEEEEecCCChHHH---HHHHHHHHhc----CCCEEEEEECccchhhh-hH-HHHHHHHHHhcCCCEEEEEc
Confidence            33  789999999999885433   3333344442    78999999999986222 11 12346677888999999999


Q ss_pred             CCCCcHHHHHHHHHHHhhcC
Q psy10504        250 KNKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       250 ~~~~gv~~l~~~i~~~i~~~  269 (286)
                      ++|.|+++++++|.+.+...
T Consensus       151 ~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          151 TRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             GGGHHHHHHHHHHHTCCCCC
T ss_pred             CCCCCHHHHHHHHHHHHhcC
Confidence            99999999999999887654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.89  E-value=1.7e-23  Score=181.26  Aligned_cols=150  Identities=14%  Similarity=0.246  Sum_probs=116.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh----------hhhhcc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS----------MRDLYI  173 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~----------~~~~~~  173 (286)
                      .+|+++|.+|+|||||+|+|.+... ...+++++.+.....+..++..  +.+|||||+..+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~--~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHL--IEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEE--EEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeE--EEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            4899999999999999999998754 4455556667777788888875  89999999987764          456677


Q ss_pred             --cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504        174 --KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN  251 (286)
Q Consensus       174 --~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  251 (286)
                        +.+|++++|+|+++.++...+.   ..+..    .++|+++|+||+|+.+.. .. ......+.+.++++++++||++
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~---~~l~~----~~~pvilv~NK~Dl~~~~-~~-~~~~~~l~~~lg~~vi~~SA~~  150 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLT---SQLFE----LGKPVVVALNMMDIAEHR-GI-SIDTEKLESLLGCSVIPIQAHK  150 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHH---HHHTT----SCSCEEEEEECHHHHHHT-TC-EECHHHHHHHHCSCEEECBGGG
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHH---HHHHH----cCCCEEEEEEChhcCCcC-Cc-HHHHHHHHHHcCCCEEEEECCC
Confidence              8899999999999854433322   22222    378999999999986222 11 1234557788899999999999


Q ss_pred             CCcHHHHHHHHHHH
Q psy10504        252 KTNVNEMFAEIVRE  265 (286)
Q Consensus       252 ~~gv~~l~~~i~~~  265 (286)
                      |.|+++++++|.+.
T Consensus       151 g~gi~el~~~i~~~  164 (256)
T 3iby_A          151 NIGIPALQQSLLHC  164 (256)
T ss_dssp             TBSHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999987

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.89  E-value=5.9e-23  Score=173.27  Aligned_cols=166  Identities=16%  Similarity=0.155  Sum_probs=109.2

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCc---CCCccCCCccceEEEEEEECCeEEEEEEEeCCCc----------ccchh
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGC---FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT----------EQFAS  167 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~----------~~~~~  167 (286)
                      ....++|+++|++|+|||||+++|++..   ......+++.+.....+.. .....+.+|||||.          +.+..
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~  104 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAHWEQ  104 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC-TTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecC-CCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence            3457899999999999999999999976   3344444444333333321 22234889999994          44455


Q ss_pred             hhhhcccC---ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC-CHHHH-HHHHHh---
Q psy10504        168 MRDLYIKN---GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREV-PTLDG-QALAQS---  239 (286)
Q Consensus       168 ~~~~~~~~---~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~-~~~~~~---  239 (286)
                      +...+++.   +|++++|+|++++.+... ..++..+..    .++|+++|+||+|+.+..... ..... +.+...   
T Consensus       105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~  179 (223)
T 4dhe_A          105 LLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA  179 (223)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence            66666655   888999999998654332 333444433    378999999999997221110 01111 222222   


Q ss_pred             ---cCCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCC
Q psy10504        240 ---WGCPFIEASAKNKTNVNEMFAEIVREMNFNPEK  272 (286)
Q Consensus       240 ---~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~  272 (286)
                         .+.+++++||++|.|+++++++|.+.+......
T Consensus       180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~~  215 (223)
T 4dhe_A          180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAAD  215 (223)
T ss_dssp             TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-----
T ss_pred             ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCCc
Confidence               457899999999999999999999998765443

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.89  E-value=3.1e-22  Score=187.42  Aligned_cols=156  Identities=21%  Similarity=0.244  Sum_probs=103.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhh--------hhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMR--------DLY  172 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~--------~~~  172 (286)
                      ..++|+++|++|+|||||+|+|.+..  +...+++++.+.....+.+++..  +.+|||||+.++...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~--l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTM--FRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEE--EEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeE--EEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            45899999999999999999999874  46677778888888888888876  8999999998766443        347


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504        173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK  252 (286)
Q Consensus       173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~  252 (286)
                      ++.+|++++|+|++++.+++++..+...+...   .++|+++|+||+|+.+... .   ..+.+.+....+++++||++|
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piIvV~NK~Dl~~~~~-~---~~~~l~~~~~~~~i~vSAktg  382 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFLTVANKLDRAANAD-A---LIRAIADGTGTEVIGISALNG  382 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEEEEEECTTSCTTTH-H---HHHHHHHHHTSCEEECBTTTT
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEEEEEECcCCCCccc-h---hHHHHHhcCCCceEEEEECCC
Confidence            89999999999999998886554444444432   2789999999999973222 1   223344433478999999999


Q ss_pred             CcHHHHHHHHHHHhh
Q psy10504        253 TNVNEMFAEIVREMN  267 (286)
Q Consensus       253 ~gv~~l~~~i~~~i~  267 (286)
                      .|+++++++|.+.+.
T Consensus       383 ~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          383 DGIDTLKQHMGDLVK  397 (476)
T ss_dssp             BSHHHHHHHHTHHHH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999999987

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.88  E-value=1.7e-22  Score=176.43  Aligned_cols=158  Identities=18%  Similarity=0.175  Sum_probs=120.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCC-ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh------hhhhcc--
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFME-KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS------MRDLYI--  173 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~------~~~~~~--  173 (286)
                      +.++|+++|++|+|||||+++|.+..+.. ..++++.+.....+..++..  +.+|||||+..+..      +...++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            56899999999999999999999976643 33444446666777777776  88999999988776      555666  


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCC
Q psy10504        174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT  253 (286)
Q Consensus       174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~  253 (286)
                      ..+|++++|+|+++..   ....++..+...   ..+|+++|+||+|+.+ .+.... ....+.+.++++++++||++|.
T Consensus        80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~-~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~  151 (271)
T 3k53_A           80 GNADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLK-KKGAKI-DIKKMRKELGVPVIPTNAKKGE  151 (271)
T ss_dssp             TCCSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHH-HHTCCC-CHHHHHHHHSSCEEECBGGGTB
T ss_pred             cCCcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCc-ccccHH-HHHHHHHHcCCcEEEEEeCCCC
Confidence            6899999999998853   223333334332   1389999999999852 121211 2667788889999999999999


Q ss_pred             cHHHHHHHHHHHhhcCC
Q psy10504        254 NVNEMFAEIVREMNFNP  270 (286)
Q Consensus       254 gv~~l~~~i~~~i~~~~  270 (286)
                      |++++++++.+.+....
T Consensus       152 gi~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          152 GVEELKRMIALMAEGKV  168 (271)
T ss_dssp             THHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHhccc
Confidence            99999999999887654

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.88  E-value=3.7e-22  Score=176.83  Aligned_cols=158  Identities=23%  Similarity=0.222  Sum_probs=116.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCC--CccCCCccceEEEEEEECCeEEEEEEEeCCCccc--------chhhhhh
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFM--EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ--------FASMRDL  171 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~--------~~~~~~~  171 (286)
                      .+..+|+++|++|+|||||+|+|++..+.  ...+.|+.+.....+..++.+  +.||||||+.+        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~--l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQ--IVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEE--EEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcE--EEEecCccccchhhHHHHHHHHHHHH
Confidence            45678999999999999999999998764  344556666555555555555  89999999876        4455667


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHH-HHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-cC-CCEEEEe
Q psy10504        172 YIKNGQGFVVVYSLTNHHTFQDIKQMK-ELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS-WG-CPFIEAS  248 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~~~s~~~~~~~~-~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~-~~~~~vS  248 (286)
                      +++.+|++++|+|++++.+..+  .|+ ..+...  .+++|+++|+||+|+......     ....... .+ .+++++|
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~--~~~~p~ilV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~~~iS  153 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPL--VGKVPILLVGNKLDAAKYPEE-----AMKAYHELLPEAEPRMLS  153 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG--TTTSCEEEEEECGGGCSSHHH-----HHHHHHHTSTTSEEEECC
T ss_pred             HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhh--cCCCCEEEEEECcccCCchHH-----HHHHHHHhcCcCcEEEEe
Confidence            8899999999999998765443  333 333332  247899999999999722110     1222222 22 5789999


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCC
Q psy10504        249 AKNKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       249 a~~~~gv~~l~~~i~~~i~~~~  270 (286)
                      |++|.|+++++++|.+.+++.+
T Consensus       154 A~~g~gv~~l~~~l~~~l~~~~  175 (301)
T 1wf3_A          154 ALDERQVAELKADLLALMPEGP  175 (301)
T ss_dssp             TTCHHHHHHHHHHHHTTCCBCC
T ss_pred             CCCCCCHHHHHHHHHHhcccCC
Confidence            9999999999999999887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.88  E-value=6.9e-23  Score=190.52  Aligned_cols=159  Identities=19%  Similarity=0.247  Sum_probs=117.0

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCc----------ccchhhh
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT----------EQFASMR  169 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~----------~~~~~~~  169 (286)
                      ...++|+++|++|||||||+|++++...  ...+++++.+.....+..++..  +++|||||+          +.|..++
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHH
Confidence            3569999999999999999999998765  5667777777777788888877  889999998          4555554


Q ss_pred             h-hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHH-HHHHHHh----cCCC
Q psy10504        170 D-LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLD-GQALAQS----WGCP  243 (286)
Q Consensus       170 ~-~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~-~~~~~~~----~~~~  243 (286)
                      . .+++.+|++++|+|++++.+.++. .|...+..    .++|+++|+||+|+.+. +.....+ .+.+...    .+++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~l~~~~~~~  324 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDK-DESTMKEFEENIRDHFQFLDYAP  324 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCC-CTTHHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCc-chHHHHHHHHHHHHhcccCCCCC
Confidence            4 478899999999999999888876 35555543    37899999999999733 2222222 2223333    3589


Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        244 FIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       244 ~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      ++++||++|.|++++|+.+.+.+..
T Consensus       325 ~~~~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          325 ILFMSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EEEEecccCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999987764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.87  E-value=4e-22  Score=186.36  Aligned_cols=160  Identities=21%  Similarity=0.279  Sum_probs=119.6

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCC----------cccchhhh
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG----------TEQFASMR  169 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG----------~~~~~~~~  169 (286)
                      ...++|+++|++|+|||||+++|.+..  ....+++++.+.....+..++..  +++|||||          ++.|..++
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEE--EEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCce--EEEEECCCCCcCcccchHHHHHHHHH
Confidence            457999999999999999999999754  45667777777777778888876  88999999          67777766


Q ss_pred             hh-cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc-----CCC
Q psy10504        170 DL-YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW-----GCP  243 (286)
Q Consensus       170 ~~-~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~  243 (286)
                      .. +++.+|++++|+|++++.+.++ ..|...+..    .++|+++|+||+|+.+ .+.....+.....+..     +++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~----~~~~~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~  344 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE----AGKAVVIVVNKWDAVD-KDESTMKEFEENIRDHFQFLDYAP  344 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH----TTCEEEEEEECGGGSC-CCSSHHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH----cCCCEEEEEEChhcCC-CchHHHHHHHHHHHHhcccCCCCC
Confidence            54 7899999999999998655433 334444443    3789999999999973 3334444444444433     489


Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504        244 FIEASAKNKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       244 ~~~vSa~~~~gv~~l~~~i~~~i~~~  269 (286)
                      ++++||++|.|++++|+++.+.+...
T Consensus       345 ~~~~SA~~g~gv~~l~~~i~~~~~~~  370 (456)
T 4dcu_A          345 ILFMSALTKKRIHTLMPAIIKASENH  370 (456)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            99999999999999999999877543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.87  E-value=6.4e-21  Score=175.53  Aligned_cols=172  Identities=16%  Similarity=0.136  Sum_probs=119.0

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCcc--CCCc-c--------ceEEE-----EEEE---CCeEEEEEEEeCCCc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKY--DPTI-E--------DFYRK-----EIEV---DKAPCVLEILDTAGT  162 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~--~~t~-~--------~~~~~-----~~~~---~~~~~~l~l~DtpG~  162 (286)
                      .+.++|+++|++|+|||||+++|.+.......  ..+. .        .....     ....   ......+.+||||||
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh   85 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH   85 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence            45789999999999999999999874332210  0000 0        00000     0000   112256999999999


Q ss_pred             ccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc--
Q psy10504        163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW--  240 (286)
Q Consensus       163 ~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--  240 (286)
                      ++|...+..++..+|++++|+|++++.+......++..+....   ..|+++|+||+|+.+....  ....+.+.+..  
T Consensus        86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~---~~~iivviNK~Dl~~~~~~--~~~~~~i~~~l~~  160 (403)
T 3sjy_A           86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG---VKNLIIVQNKVDVVSKEEA--LSQYRQIKQFTKG  160 (403)
T ss_dssp             GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT---CCCEEEEEECGGGSCHHHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC---CCCEEEEEECccccchHHH--HHHHHHHHHHHHh
Confidence            9999999999999999999999999876777777776665532   3589999999999732111  11112222222  


Q ss_pred             ----CCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504        241 ----GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC  278 (286)
Q Consensus       241 ----~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~~  278 (286)
                          +++++++||++|.|+++++++|.+.++......+.+.+
T Consensus       161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~  202 (403)
T 3sjy_A          161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPV  202 (403)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCE
T ss_pred             hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCCCCCCcE
Confidence                47899999999999999999999988765554444443

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.86  E-value=4e-21  Score=184.06  Aligned_cols=167  Identities=16%  Similarity=0.208  Sum_probs=120.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC--cCCCc-----c---------CCCccceEEEEEEE---CCeEEEEEEEeCCCcc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEK-----Y---------DPTIEDFYRKEIEV---DKAPCVLEILDTAGTE  163 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~-----~---------~~t~~~~~~~~~~~---~~~~~~l~l~DtpG~~  163 (286)
                      +..+|+++|++++|||||+++|+..  .+...     .         .+.+.......+.+   ++..+.+++||||||.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            4578999999999999999999862  22111     0         01111111122222   4556789999999999


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-  242 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  242 (286)
                      +|...+..+++.+|++++|+|++++.+.+....|......     ++|+++|+||+|+.+..   .....+.+...++. 
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-----~ipiIvViNKiDl~~a~---~~~v~~ei~~~lg~~  154 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM-----DLEVVPVLNKIDLPAAD---PERVAEEIEDIVGID  154 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT-----TCEEEEEEECTTSTTCC---HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEeeeccCccccc---HHHHHHHHHHHhCCC
Confidence            9999999999999999999999999888888887766543     78999999999997332   23334556666665 


Q ss_pred             --CEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCc
Q psy10504        243 --PFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASF  277 (286)
Q Consensus       243 --~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~  277 (286)
                        +++++||++|.|+++++++|.+.++......+.++
T Consensus       155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~  191 (599)
T 3cb4_D          155 ATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPL  191 (599)
T ss_dssp             CTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCC
T ss_pred             cceEEEeecccCCCchhHHHHHhhcCCCccccccCCc
Confidence              49999999999999999999999987655444443

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.86  E-value=1.8e-22  Score=169.86  Aligned_cols=144  Identities=15%  Similarity=0.207  Sum_probs=104.3

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCC---ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccC---
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFME---KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKN---  175 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~---  175 (286)
                      .+.++|+++|++|+|||||+++|.+..+..   .+.++++...        ..+.+.+|||||++.+...+..+++.   
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   81 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK   81 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence            456899999999999999999999987644   2333332111        33348899999999999988888887   


Q ss_pred             -ccEEEEEEECC-CcccHHHHHHHHHHHHHHh---CCCCCcEEEEEeCCCCCCCCCCCC------HHHHHHHHHhcCCCE
Q psy10504        176 -GQGFVVVYSLT-NHHTFQDIKQMKELITRVK---GSERVPILLVANKLDLASHQREVP------TLDGQALAQSWGCPF  244 (286)
Q Consensus       176 -~d~vilv~d~~-~~~s~~~~~~~~~~i~~~~---~~~~~piivv~nK~Dl~~~~~~~~------~~~~~~~~~~~~~~~  244 (286)
                       +|++++|+|++ ++.+++....|+..+....   ...++|+++|+||+|+.+. +...      ..+...++...+.++
T Consensus        82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~l~~~~~~~~~~~~~~~  160 (218)
T 1nrj_B           82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA-RPPSKIKDALESEIQKVIERRKKSL  160 (218)
T ss_dssp             GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC-CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc-CCHHHHHHHHHHHHHHHHHHHhccc
Confidence             89999999999 8889999998888776543   3358999999999999733 3222      334555666667788


Q ss_pred             EEEeCCCCCc
Q psy10504        245 IEASAKNKTN  254 (286)
Q Consensus       245 ~~vSa~~~~g  254 (286)
                      +++||++|.+
T Consensus       161 ~~~Sa~~~~~  170 (218)
T 1nrj_B          161 NEVERKINEE  170 (218)
T ss_dssp             HC--------
T ss_pred             cccccccccc
Confidence            9999998764

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.86  E-value=4.8e-21  Score=183.31  Aligned_cols=167  Identities=18%  Similarity=0.204  Sum_probs=121.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC--cCCCcc--------------CCCccc--eEEEEEEE-CCeEEEEEEEeCCCcc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEKY--------------DPTIED--FYRKEIEV-DKAPCVLEILDTAGTE  163 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~--------------~~t~~~--~~~~~~~~-~~~~~~l~l~DtpG~~  163 (286)
                      +..+|+++|++++|||||+++|+..  .+....              .+.+..  .....+.. ++..+.+++||||||.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            5679999999999999999999862  221110              000111  11122222 4556789999999999


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-  242 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  242 (286)
                      +|...+.++++.+|++++|+|++++.+.+....|......     ++|+++|+||+|+....   .....+.+...++. 
T Consensus        85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~-----~ipiIvviNKiDl~~a~---~~~v~~el~~~lg~~  156 (600)
T 2ywe_A           85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ-----DLVIIPVINKIDLPSAD---VDRVKKQIEEVLGLD  156 (600)
T ss_dssp             GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT-----TCEEEEEEECTTSTTCC---HHHHHHHHHHTSCCC
T ss_pred             hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC-----CCCEEEEEeccCccccC---HHHHHHHHHHhhCCC
Confidence            9999999999999999999999999988888887766543     78999999999997332   22334556666675 


Q ss_pred             --CEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCc
Q psy10504        243 --PFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASF  277 (286)
Q Consensus       243 --~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~  277 (286)
                        +++++||++|.|+++++++|.+.++......+.++
T Consensus       157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~~~~pl  193 (600)
T 2ywe_A          157 PEEAILASAKEGIGIEEILEAIVNRIPPPKGDPQKPL  193 (600)
T ss_dssp             GGGCEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCC
T ss_pred             cccEEEEEeecCCCchHHHHHHHHhcccccccccCCc
Confidence              48999999999999999999999987654444443

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.86  E-value=1.9e-22  Score=186.06  Aligned_cols=159  Identities=18%  Similarity=0.201  Sum_probs=118.1

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh-------hh
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM-------RD  170 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~-------~~  170 (286)
                      +....++|+++|++|+|||||+++|.+..+  .....+++.+.....+.+.+.. .+.+|||||++++..+       ..
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence            344679999999999999999999998765  3556666667777778777652 4899999999987765       34


Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC
Q psy10504        171 LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAK  250 (286)
Q Consensus       171 ~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~  250 (286)
                      .+++.+|++++|+|+..   .+....|+..+...    ++|+++|+||+|+.+....   ...+.+.+.++++++++||+
T Consensus       109 ~~l~~aD~vllVvD~~~---~~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~---~~~~~l~~~~g~~v~~vSAk  178 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAP---TPYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE---ELKGLYESRYEAKVLLVSAL  178 (423)
T ss_dssp             HHHTSCSEEEEECSSSC---CHHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT---HHHHHSSCCTTCCCCCCSSC
T ss_pred             HHHhcCCEEEEEEeCCC---hHHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH---HHHHHHHHHcCCCEEEEECC
Confidence            47889999999999932   23345566666653    7899999999999743332   45566667778999999999


Q ss_pred             CCCcHHHHHHHHHHHhhcC
Q psy10504        251 NKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       251 ~~~gv~~l~~~i~~~i~~~  269 (286)
                      +|.|++++|++|.+.+++.
T Consensus       179 tg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          179 QKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CTTSTTTHHHHHHHHSCCC
T ss_pred             CCCCHHHHHHHHHHhhhhh
Confidence            9999999999999999665

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.86  E-value=1.6e-21  Score=182.81  Aligned_cols=151  Identities=21%  Similarity=0.243  Sum_probs=119.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcc-cchh--------hhhhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE-QFAS--------MRDLY  172 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~-~~~~--------~~~~~  172 (286)
                      .++|+++|.+|+|||||+|+|.+..  ++..+++|+.+.....+.+++..  +.+|||||+. ++..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~--~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE--EEEEECCCccccchhhHHHHHHHHHHHH
Confidence            4899999999999999999999864  46778888888888888888876  8899999988 6542        23467


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504        173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK  252 (286)
Q Consensus       173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~  252 (286)
                      ++.+|++++|+|++++.++++..- +..+      .++|+++|+||+|+.+.   ....+...+. ..+.+++++||++|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~i-l~~l------~~~piivV~NK~DL~~~---~~~~~~~~~~-~~~~~~i~iSAktg  389 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRKI-LERI------KNKRYLVVINKVDVVEK---INEEEIKNKL-GTDRHMVKISALKG  389 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHHH-HHHH------TTSSEEEEEEECSSCCC---CCHHHHHHHH-TCSTTEEEEEGGGT
T ss_pred             hhcccEEEEEecCCCCCCHHHHHH-HHHh------cCCCEEEEEECcccccc---cCHHHHHHHh-cCCCcEEEEECCCC
Confidence            889999999999999887766432 2222      27899999999999732   2333333332 23478999999999


Q ss_pred             CcHHHHHHHHHHHhh
Q psy10504        253 TNVNEMFAEIVREMN  267 (286)
Q Consensus       253 ~gv~~l~~~i~~~i~  267 (286)
                      .|+++++++|.+.+.
T Consensus       390 ~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          390 EGLEKLEESIYRETQ  404 (482)
T ss_dssp             CCHHHHHHHHHHHTH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999999765

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.86  E-value=1.8e-23  Score=197.67  Aligned_cols=160  Identities=18%  Similarity=0.189  Sum_probs=116.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEE-CCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEV-DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      +.++|+++|++|+|||||+++|.+..+...+.++++ +.....+.. ++..  ++|||||||+.|..++..+++.+|+++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~--i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEK--ITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSC--CBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCE--EEEEECCChHHHHHHHHHHHccCCEEE
Confidence            568999999999999999999998766544444433 222333333 2333  889999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH---HHhc--CCCEEEEeCCCCCcH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL---AQSW--GCPFIEASAKNKTNV  255 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~---~~~~--~~~~~~vSa~~~~gv  255 (286)
                      +|+|++++...+....|... .    ..++|+++|+||+|+.+........+....   ...+  .++++++||++|.|+
T Consensus        81 LVVDa~dg~~~qt~e~l~~~-~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI  155 (537)
T 3izy_P           81 LVVAADDGVMKQTVESIQHA-K----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENM  155 (537)
T ss_dssp             EECBSSSCCCHHHHHHHHHH-H----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred             EEEECCCCccHHHHHHHHHH-H----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence            99999998766555443222 2    237899999999999743332222222211   1112  257999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q psy10504        256 NEMFAEIVREMNFN  269 (286)
Q Consensus       256 ~~l~~~i~~~i~~~  269 (286)
                      ++++++|...+...
T Consensus       156 ~eLle~I~~l~~~~  169 (537)
T 3izy_P          156 MALAEATIALAEML  169 (537)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHhhhcc
Confidence            99999999987543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.86  E-value=4.5e-21  Score=178.43  Aligned_cols=154  Identities=21%  Similarity=0.274  Sum_probs=108.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCccc---------chhhhhhcc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ---------FASMRDLYI  173 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~---------~~~~~~~~~  173 (286)
                      ++|+++|.+|||||||+|+|++..  .+...++++.+.....+.+++..  +++|||||++.         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence            489999999999999999999876  35677777778888888888887  78999999764         234566789


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH-HHHHHhcCC-CEEEEeCCC
Q psy10504        174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG-QALAQSWGC-PFIEASAKN  251 (286)
Q Consensus       174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~-~~~~vSa~~  251 (286)
                      +++|++++|+|++++.+..+. .+...+..    .++|+++|+||+|+.+.   . ..+. ..+. ..+. +++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~-~i~~~l~~----~~~p~ilv~NK~D~~~~---~-~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDE-SLADFLRK----STVDTILVANKAENLRE---F-EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHH-HHHHHHHH----HTCCEEEEEESCCSHHH---H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEeCCCCccc---c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence            999999999999987655432 11122222    27899999999998511   0 1112 2232 4565 789999999


Q ss_pred             CCcHHHHHHHHHHHhhcCC
Q psy10504        252 KTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i~~~~  270 (286)
                      |.|++++++++.+.+++..
T Consensus       150 g~gv~~L~~~i~~~l~~~~  168 (439)
T 1mky_A          150 NINLDTMLETIIKKLEEKG  168 (439)
T ss_dssp             TBSHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHhccccc
Confidence            9999999999999987543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.86  E-value=3e-21  Score=181.38  Aligned_cols=163  Identities=16%  Similarity=0.163  Sum_probs=113.1

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCc-------CCCcc-CCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhh
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGC-------FMEKY-DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDL  171 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~-------~~~~~-~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~  171 (286)
                      ..++.++|+++|++++|||||+++|.+..       +.... .+.+.+.....+.+++..  +++||||||++|...+..
T Consensus        15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~--i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYR--ITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEE--EEECCCSSHHHHHHHHHH
T ss_pred             hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEE--EEEEECCChHHHHHHHHH
Confidence            34678999999999999999999999865       11122 222223333345556544  899999999999999999


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHHhc----CCCEEE
Q psy10504        172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR-EVPTLDGQALAQSW----GCPFIE  246 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~----~~~~~~  246 (286)
                      ++..+|++++|+|++++...+.... +..+..    .++|+++|+||+|+.+... .....+...+....    +.++++
T Consensus        93 ~~~~aD~~ilVvda~~g~~~qt~e~-l~~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~  167 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPKTQTGEH-MLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP  167 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHH-HHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred             HHhhCCEEEEEEecCCCccHHHHHH-HHHHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence            9999999999999998543333322 222222    2789999999999973111 11122333444444    578999


Q ss_pred             EeCCCCCcHHHHHHHHHHHhhcC
Q psy10504        247 ASAKNKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       247 vSa~~~~gv~~l~~~i~~~i~~~  269 (286)
                      +||++|+|+++++++|.+.++..
T Consensus       168 vSA~~g~gI~~L~~~L~~~i~~~  190 (482)
T 1wb1_A          168 ISAKTGFGVDELKNLIITTLNNA  190 (482)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             EECcCCCCHHHHHHHHHHhhcCc
Confidence            99999999999999999987643

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.85  E-value=3e-20  Score=171.33  Aligned_cols=172  Identities=17%  Similarity=0.175  Sum_probs=107.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCc---CCCccCC--Ccc-ceEEEEEEE-------------C--C----eEEEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGC---FMEKYDP--TIE-DFYRKEIEV-------------D--K----APCVLEIL  157 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~---~~~~~~~--t~~-~~~~~~~~~-------------~--~----~~~~l~l~  157 (286)
                      ..++|+++|++++|||||+++|.+..   +.....+  |+. .+....+..             +  +    ....+.+|
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            56899999999999999999998532   2222223  221 111111111             1  1    12569999


Q ss_pred             eCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCHHHHHHH
Q psy10504        158 DTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPTLDGQAL  236 (286)
Q Consensus       158 DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~  236 (286)
                      |||||++|...+...+..+|++++|+|++++.........+..+...   ...|+++|+||+|+.+.... ....+...+
T Consensus        87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~  163 (408)
T 1s0u_A           87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKEF  163 (408)
T ss_dssp             ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence            99999999988888899999999999999764222222222222221   13589999999999743322 223344444


Q ss_pred             HHh---cCCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCc
Q psy10504        237 AQS---WGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASF  277 (286)
Q Consensus       237 ~~~---~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~  277 (286)
                      .+.   .+++++++||++|+|+++++++|.+.++......+.+.
T Consensus       164 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~~~~~~~  207 (408)
T 1s0u_A          164 VKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRDPDATP  207 (408)
T ss_dssp             HTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCCCCTTSCC
T ss_pred             HhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcccCCCCe
Confidence            443   25789999999999999999999998876544444443

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.85  E-value=1.7e-21  Score=175.16  Aligned_cols=160  Identities=20%  Similarity=0.274  Sum_probs=123.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc----cchhhhhhccc---Ccc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE----QFASMRDLYIK---NGQ  177 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~----~~~~~~~~~~~---~~d  177 (286)
                      +|+++|.+|||||||++++..... ...++.++.+.....+.+++. ..+.+|||||+.    ++..+...+++   .++
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            689999999999999999998653 345555655555556666652 238999999964    34445555554   499


Q ss_pred             EEEEEEECCC---cccHHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--CCEEEEeCCC
Q psy10504        178 GFVVVYSLTN---HHTFQDIKQMKELITRVKG-SERVPILLVANKLDLASHQREVPTLDGQALAQSWG--CPFIEASAKN  251 (286)
Q Consensus       178 ~vilv~d~~~---~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~  251 (286)
                      ++++|+|+++   ..+++++..|...+..+.. ..++|+++|+||+|+...     .+..+.+.+.+.  .+++++||++
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~-----~e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-----AENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC-----HHHHHHHHHHhhcCCCEEEEECCC
Confidence            9999999998   7888999988888887532 247999999999999721     134566666666  6899999999


Q ss_pred             CCcHHHHHHHHHHHhhcCCC
Q psy10504        252 KTNVNEMFAEIVREMNFNPE  271 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i~~~~~  271 (286)
                      +.|+++++++|.+.+.+.+.
T Consensus       314 g~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          314 REGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             SSTTHHHHHHHHHHHTSCCC
T ss_pred             CcCHHHHHHHHHHHHhhCcc
Confidence            99999999999999987654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.85  E-value=3.8e-20  Score=167.75  Aligned_cols=159  Identities=20%  Similarity=0.204  Sum_probs=119.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCC-CccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh---------hhhhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS---------MRDLY  172 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~---------~~~~~  172 (286)
                      ..++|+++|.+|||||||+++|.+.... ...+.++.+.....+..++..  +.+|||||+..+..         ....+
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  243 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFR--YQIIDTPGLLDRPISERNEIEKQAILAL  243 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEE--EEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCce--EEEEeCCCccccchhhhhHHHHHHHHHH
Confidence            5689999999999999999999987653 233444445555555555544  89999999864321         11234


Q ss_pred             ccCccEEEEEEECCCcc--cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC
Q psy10504        173 IKNGQGFVVVYSLTNHH--TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAK  250 (286)
Q Consensus       173 ~~~~d~vilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~  250 (286)
                      ...+|++++|+|++++.  +++....|+..+.....  ++|+++|+||+|+.+ ...  ..+........+++++++||+
T Consensus       244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~-~~~--~~~~~~~~~~~~~~~~~iSA~  318 (357)
T 2e87_A          244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVAD-EEN--IKRLEKFVKEKGLNPIKISAL  318 (357)
T ss_dssp             GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCC-HHH--HHHHHHHHHHTTCCCEECBTT
T ss_pred             HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCC-hHH--HHHHHHHHHhcCCCeEEEeCC
Confidence            55799999999999876  67888888888776432  789999999999972 221  233445556678999999999


Q ss_pred             CCCcHHHHHHHHHHHhhc
Q psy10504        251 NKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       251 ~~~gv~~l~~~i~~~i~~  268 (286)
                      +|+|+++++++|.+.+..
T Consensus       319 ~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          319 KGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             TTBTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999999998754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.85  E-value=1.4e-20  Score=166.65  Aligned_cols=160  Identities=18%  Similarity=0.126  Sum_probs=114.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCC--CccCCCccceEEEEEEECCeEEEEEEEeCCCcc-c--------chhhhh
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFM--EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE-Q--------FASMRD  170 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~-~--------~~~~~~  170 (286)
                      .+..+|+++|++|||||||++++++..+.  ...++++.+.....+..++..  +.+|||||+. .        +.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~--i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQ--AIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEE--EEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCee--EEEEECcCCCccchhhHHHHHHHHHH
Confidence            35678999999999999999999997653  344445555555555555555  8899999987 2        333456


Q ss_pred             hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeC
Q psy10504        171 LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASA  249 (286)
Q Consensus       171 ~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa  249 (286)
                      .+++.+|++++|+|+++ -+..  ..++.....   ..+.|+++++||+|+.. .+.........+.+.++. .++++||
T Consensus        84 ~~l~~~D~vl~Vvd~~~-~~~~--~~~i~~~l~---~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~~~~~~~~~i~iSA  156 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR-WTPD--DEMVLNKLR---EGKAPVILAVNKVDNVQ-EKADLLPHLQFLASQMNFLDIVPISA  156 (301)
T ss_dssp             SCCCCEEEEEEEEETTC-CCHH--HHHHHHHHH---SSSSCEEEEEESTTTCC-CHHHHHHHHHHHHTTSCCSEEEECCT
T ss_pred             HHHhcCCEEEEEEeCCC-CCHH--HHHHHHHHH---hcCCCEEEEEECcccCc-cHHHHHHHHHHHHHhcCcCceEEEEC
Confidence            77899999999999987 3322  223322222   23789999999999973 122122334445555665 6899999


Q ss_pred             CCCCcHHHHHHHHHHHhhcCC
Q psy10504        250 KNKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       250 ~~~~gv~~l~~~i~~~i~~~~  270 (286)
                      +++.|++++++.|.+.+++.+
T Consensus       157 ~~g~~v~~l~~~i~~~l~~~~  177 (301)
T 1ega_A          157 ETGLNVDTIAAIVRKHLPEAT  177 (301)
T ss_dssp             TTTTTHHHHHHHHHTTCCBCC
T ss_pred             CCCCCHHHHHHHHHHhCCcCC
Confidence            999999999999999887654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.85  E-value=2.9e-20  Score=172.85  Aligned_cols=157  Identities=20%  Similarity=0.173  Sum_probs=103.7

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcC--cCCCc------------------------------cCCCccceEEEEEEEC
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSG--CFMEK------------------------------YDPTIEDFYRKEIEVD  148 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~  148 (286)
                      ....++|+++|++|+|||||+++|+..  .+...                              ..+.+.+.....+..+
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            446799999999999999999999542  11111                              1122223334445555


Q ss_pred             CeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCccc---HHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCC
Q psy10504        149 KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHT---FQDIKQMKELITRVKGSERVP-ILLVANKLDLASH  224 (286)
Q Consensus       149 ~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s---~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~  224 (286)
                      +.  .+.|||||||++|...+..+++.+|++++|+|++++..   ++...++...+..... .++| +++|+||+|+...
T Consensus        94 ~~--~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v~~iIvviNK~Dl~~~  170 (439)
T 3j2k_7           94 KK--HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKMDDPTV  170 (439)
T ss_pred             Ce--EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCCCeEEEEeecCCCccc
Confidence            54  49999999999999999999999999999999998642   1111122222222111 2667 9999999999622


Q ss_pred             CC-----CCCHHHHHHHHHhcC------CCEEEEeCCCCCcHHHHHH
Q psy10504        225 QR-----EVPTLDGQALAQSWG------CPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       225 ~~-----~~~~~~~~~~~~~~~------~~~~~vSa~~~~gv~~l~~  260 (286)
                      +.     .....+...+.+..+      ++++++||++|.|++++.+
T Consensus       171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            11     111122333343443      5799999999999999655

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.84  E-value=3.4e-21  Score=179.09  Aligned_cols=154  Identities=17%  Similarity=0.215  Sum_probs=104.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc--------cchhhhhhcc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE--------QFASMRDLYI  173 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~--------~~~~~~~~~~  173 (286)
                      .++|+++|++|||||||+|+|.+..+  ....++++.+.....+.+++..  +.+|||||++        .+...+..++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYD--FNLIDTGGIDIGDEPFLAQIRQQAEIAM   80 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSC--CEEEC---------CHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCce--EEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            36899999999999999999998654  4555666666666666666665  8999999986        5666778889


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCC
Q psy10504        174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNK  252 (286)
Q Consensus       174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~  252 (286)
                      +.+|++++|+|++++.+..+.  ++..+..   ..++|+++|+||+|+........     .+. ..+. +++++||++|
T Consensus        81 ~~ad~il~vvD~~~~~~~~d~--~~~~~l~---~~~~pvilv~NK~D~~~~~~~~~-----~~~-~lg~~~~~~iSA~~g  149 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAADE--EVAKILY---RTKKPVVLAVNKLDNTEMRANIY-----DFY-SLGFGEPYPISGTHG  149 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHHH--HHHHHHT---TCCSCEEEEEECCCC-----CCC-----SSG-GGSSCCCEECBTTTT
T ss_pred             HhCCEEEEEEeCCCCCCHHHH--HHHHHHH---HcCCCEEEEEECccCccchhhHH-----HHH-HcCCCCeEEEeCcCC
Confidence            999999999999998766542  2222222   24889999999999873221111     111 2344 7899999999


Q ss_pred             CcHHHHHHHHHHHhhcCC
Q psy10504        253 TNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       253 ~gv~~l~~~i~~~i~~~~  270 (286)
                      .|++++++++.+.+++.+
T Consensus       150 ~gv~~L~~~i~~~l~~~~  167 (436)
T 2hjg_A          150 LGLGDLLDAVAEHFKNIP  167 (436)
T ss_dssp             BTHHHHHHHHHHTGGGCC
T ss_pred             CChHHHHHHHHHhcCccc
Confidence            999999999999997643

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.84  E-value=1.2e-20  Score=173.69  Aligned_cols=170  Identities=18%  Similarity=0.177  Sum_probs=118.3

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcC--------cCCCc----------cCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSG--------CFMEK----------YDPTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--------~~~~~----------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      ...++|+++|++|+|||||+++|.+.        .+...          ..+.+.+.....+...+.  .+.+||||||+
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~--~~~iiDtpG~~   86 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKR--HYSHVDCPGHA   86 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSC--EEEEEECCCSG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCe--EEEEEECCChH
Confidence            35699999999999999999999873        11110          111222333333333344  48999999999


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCCC--CHHHHHHHHHhc
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQREV--PTLDGQALAQSW  240 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~~--~~~~~~~~~~~~  240 (286)
                      +|...+..+++.+|++++|+|++++...+. ..++..+...    ++| +++|+||+|+.++....  ...+...+.+..
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~~----~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~  161 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV----GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY  161 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT----TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc----CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998765443 4444444432    678 89999999997311111  112344455555


Q ss_pred             C-----CCEEEEeCCCCCc------------------HHHHHHHHHHHhhcCCCCcCCCce
Q psy10504        241 G-----CPFIEASAKNKTN------------------VNEMFAEIVREMNFNPEKDNASFC  278 (286)
Q Consensus       241 ~-----~~~~~vSa~~~~g------------------v~~l~~~i~~~i~~~~~~~~~~~~  278 (286)
                      +     ++++++||++|.|                  ++++++.|.+.++......+.+++
T Consensus       162 ~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~  222 (405)
T 2c78_A          162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFL  222 (405)
T ss_dssp             TSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCE
T ss_pred             cccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcE
Confidence            4     6899999999987                  889999999888765544444443

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.84  E-value=1.8e-22  Score=189.35  Aligned_cols=157  Identities=24%  Similarity=0.322  Sum_probs=111.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ++.++|+++|++++|||||+++|.+..+...+.++++ +.....+..++..  ++|||||||+.|..++.+++..+|+++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~--i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGM--ITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSC--CCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEE--EEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            3668999999999999999999998665544433322 2222334445554  889999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCHH--HHHHHHHhcC--CCEEEEeCCCCCcH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPTL--DGQALAQSWG--CPFIEASAKNKTNV  255 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~--~~~~~~~~~~--~~~~~vSa~~~~gv  255 (286)
                      +|+|++++...+....|. .+..    .++|+++++||+|+.+.... +...  +...+.+.++  ++++++||++|.|+
T Consensus        80 LVVda~~g~~~qT~e~l~-~~~~----~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI  154 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEAIQ-HAKA----AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGI  154 (501)
T ss_dssp             EEEETTTBSCTTTHHHHH-HHHH----TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTC
T ss_pred             EEeecccCccHHHHHHHH-HHHh----cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCc
Confidence            999999865444333332 2222    37899999999999743211 1000  0011122233  68999999999999


Q ss_pred             HHHHHHHHHH
Q psy10504        256 NEMFAEIVRE  265 (286)
Q Consensus       256 ~~l~~~i~~~  265 (286)
                      ++++++|...
T Consensus       155 ~eLle~I~~~  164 (501)
T 1zo1_I          155 DELLDAILLQ  164 (501)
T ss_dssp             TTHHHHTTTT
T ss_pred             chhhhhhhhh
Confidence            9999999864

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.84  E-value=7e-21  Score=177.62  Aligned_cols=154  Identities=20%  Similarity=0.290  Sum_probs=109.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhh--------hhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMR--------DLY  172 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~--------~~~  172 (286)
                      ..++|+++|++|+|||||+|+|.+..  +....++++.+.....+.+++..  +.+|||||+.++....        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP--VQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE--EEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE--EEEEECCccccchhHHHHHHHHHHhhh
Confidence            46899999999999999999999854  35666777777777778888877  7899999987655432        336


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504        173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK  252 (286)
Q Consensus       173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~  252 (286)
                      ++.+|++++|+|++++.+.+. ..|+..+.      +.|+++|+||+|+.+.. ....  ...+  ..+.+++++||++|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~------~~piivV~NK~Dl~~~~-~~~~--~~~~--~~~~~~i~iSAktg  368 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK------HRPLILVMNKIDLVEKQ-LITS--LEYP--ENITQIVHTAAAQK  368 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT------TSCEEEEEECTTSSCGG-GSTT--CCCC--TTCCCEEEEBTTTT
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc------CCcEEEEEECCCCCcch-hhHH--HHHh--ccCCcEEEEECCCC
Confidence            788999999999999876655 33333332      46999999999997322 2110  0000  13578999999999


Q ss_pred             CcHHHHHHHHHHHhhcCC
Q psy10504        253 TNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       253 ~gv~~l~~~i~~~i~~~~  270 (286)
                      .|+++++++|.+.+....
T Consensus       369 ~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          369 QGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             BSHHHHHHHHHHHHTTSS
T ss_pred             CCHHHHHHHHHHHHhccC
Confidence            999999999999987654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.83  E-value=4.1e-20  Score=171.96  Aligned_cols=158  Identities=25%  Similarity=0.243  Sum_probs=110.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhh-----------
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMR-----------  169 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~-----------  169 (286)
                      ..++|+++|++|||||||+|++.+...  ....++++.+.....+.+++..  +.+|||||+.++....           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHHH
Confidence            568999999999999999999998754  5667777777777888888886  7899999985433221           


Q ss_pred             -hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH-HHHHHh----cCCC
Q psy10504        170 -DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG-QALAQS----WGCP  243 (286)
Q Consensus       170 -~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-~~~~~~----~~~~  243 (286)
                       ..+++.+|++++|+|++++.+.++.. +...+..    .++|+++|+||+|+.+. +.....+. +.+...    .+.+
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~~-i~~~l~~----~~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~  330 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQR-MAGLMER----RGRASVVVFNKWDLVVH-REKRYDEFTKLFREKLYFIDYSP  330 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH----TTCEEEEEEECGGGSTT-GGGCHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECccCCCc-hhhHHHHHHHHHHHHhccCCCCc
Confidence             23567899999999999877766532 2233322    37899999999999732 22222222 222232    3478


Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        244 FIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       244 ~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      ++++||++|.|++++|+.+.+.+..
T Consensus       331 ~~~~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          331 LIFTSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999987654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.83  E-value=5.5e-20  Score=169.66  Aligned_cols=171  Identities=16%  Similarity=0.151  Sum_probs=112.7

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcC---cCCCccCCC-ccceE--EEEEEE-------------C--C----eEEEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSG---CFMEKYDPT-IEDFY--RKEIEV-------------D--K----APCVLEI  156 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~---~~~~~~~~t-~~~~~--~~~~~~-------------~--~----~~~~l~l  156 (286)
                      ...++|+++|++++|||||+++|.+.   .+.....+. +.+..  ...+..             +  +    ....+.|
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            45689999999999999999999853   222232231 22211  111211             1  1    1256999


Q ss_pred             EeCCCcccchhhhhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCHHHHH
Q psy10504        157 LDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPTLDGQ  234 (286)
Q Consensus       157 ~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~  234 (286)
                      ||||||++|...+...+..+|++++|+|++++. ..+.. ..+..+... .  ..|+++|+||+|+.+.... ....+..
T Consensus        88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~-e~l~~~~~~-~--~~~iivviNK~Dl~~~~~~~~~~~~i~  163 (410)
T 1kk1_A           88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTR-EHLMALQII-G--QKNIIIAQNKIELVDKEKALENYRQIK  163 (410)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHH-HHHHHHHHH-T--CCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHH-HHHHHHHHc-C--CCcEEEEEECccCCCHHHHHHHHHHHH
Confidence            999999999988888899999999999999764 22222 222222222 1  3589999999999732210 1112233


Q ss_pred             HHHHh---cCCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCC
Q psy10504        235 ALAQS---WGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNAS  276 (286)
Q Consensus       235 ~~~~~---~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~  276 (286)
                      .+.+.   .+++++++||++|.|+++++++|.+.++......+.+
T Consensus       164 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~~~~~~  208 (410)
T 1kk1_A          164 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPNKP  208 (410)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSC
T ss_pred             HHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccccCCC
Confidence            33332   3578999999999999999999999887654443333

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.83  E-value=1.6e-20  Score=172.52  Aligned_cols=169  Identities=17%  Similarity=0.165  Sum_probs=115.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCc-------CCCc----------cCCCccceEEEEEEECCeEEEEEEEeCCCcccc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGC-------FMEK----------YDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF  165 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~-------~~~~----------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~  165 (286)
                      ..++|+++|++++|||||+++|.+..       +...          ..+.+.+.  ....+......+.+||||||++|
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~--~~~~~~~~~~~~~iiDtpG~~~f   79 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA--AHVEYSTAARHYAHTDCPGHADY   79 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC--EEEEEECSSCEEEEEECSSHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEe--eeEEeccCCeEEEEEECCChHHH
Confidence            46899999999999999999998731       1100          11111111  12223333345899999999999


Q ss_pred             hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCC--CCHHHHHHHHHhcC-
Q psy10504        166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQRE--VPTLDGQALAQSWG-  241 (286)
Q Consensus       166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-  241 (286)
                      ...+..+++.+|++|+|+|++++...+....| ..+..    .++| +++++||+|+.++...  ....+...+.+..+ 
T Consensus        80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~  154 (397)
T 1d2e_A           80 VKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGY  154 (397)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCC
Confidence            99899999999999999999997655544443 33332    2778 7899999999731111  11124445555555 


Q ss_pred             ----CCEEEEeCCCCCc----------HHHHHHHHHHHhhcCCCCcCCCce
Q psy10504        242 ----CPFIEASAKNKTN----------VNEMFAEIVREMNFNPEKDNASFC  278 (286)
Q Consensus       242 ----~~~~~vSa~~~~g----------v~~l~~~i~~~i~~~~~~~~~~~~  278 (286)
                          ++++++||++|.|          ++++++.|.+.++......+.+++
T Consensus       155 ~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~  205 (397)
T 1d2e_A          155 KGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFL  205 (397)
T ss_dssp             CTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCE
T ss_pred             CcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCCCCCcEE
Confidence                6899999999764          999999999988765444444443

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.83  E-value=7.8e-20  Score=173.18  Aligned_cols=114  Identities=17%  Similarity=0.161  Sum_probs=85.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC------------------cCCC-----ccCCCccceEEEEEEECCeEEEEEEEeC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG------------------CFME-----KYDPTIEDFYRKEIEVDKAPCVLEILDT  159 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~------------------~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~l~Dt  159 (286)
                      +..+|+|+|++|+|||||+++|+..                  .+..     ...+.+.......+...+..  +++|||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~--i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYL--INLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEE--EEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEE--EEEEEC
Confidence            4679999999999999999999621                  0000     01122223334555666655  899999


Q ss_pred             CCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       160 pG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                      |||.+|...+..+++.+|++|+|+|++++.+.+....|... ..    .++|+++|+||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~-~~----~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVC-RL----RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHH-HT----TTCCEEEEEECTTSCC
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH-HH----cCCCEEEEEeCCCCcc
Confidence            99999999999999999999999999998877776655432 22    2789999999999963

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.83  E-value=6.3e-20  Score=175.88  Aligned_cols=161  Identities=20%  Similarity=0.214  Sum_probs=107.5

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEEC-----------C-----eEEEEEEEeCCCccc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD-----------K-----APCVLEILDTAGTEQ  164 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~-----------~-----~~~~l~l~DtpG~~~  164 (286)
                      ++.++|+++|++++|||||+++|++..+....++.++ +.........           +     ....++|||||||++
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            3568999999999999999999998655443321111 1111111110           0     111389999999999


Q ss_pred             chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC------------CHH-
Q psy10504        165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREV------------PTL-  231 (286)
Q Consensus       165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~------------~~~-  231 (286)
                      |..++.++++.+|++|+|+|++++...+....|. .+..    .++|+++++||+|+.+.....            ... 
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v  157 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN-ILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV  157 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-HHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-HHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence            9999999999999999999999954444333332 2222    378999999999996321110            000 


Q ss_pred             ---------H-HHHHHHh--------------cCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        232 ---------D-GQALAQS--------------WGCPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       232 ---------~-~~~~~~~--------------~~~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                               + ...+.+.              ..++++++||++|.|+++++++|...++
T Consensus       158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                     0 0111111              1147999999999999999999998775

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.82  E-value=2.4e-20  Score=168.32  Aligned_cols=126  Identities=14%  Similarity=0.120  Sum_probs=101.5

Q ss_pred             EEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCC----------cccHHHHHHHHHHHHHHhCCCCCcE
Q psy10504        143 KEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTN----------HHTFQDIKQMKELITRVKGSERVPI  212 (286)
Q Consensus       143 ~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pi  212 (286)
                      ..+.+++  +.+++|||+||+.++.+|..++++++++|+|+|+++          ..++++...|+..+.......++|+
T Consensus       186 ~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi  263 (353)
T 1cip_A          186 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI  263 (353)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred             EEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence            3455554  459999999999999999999999999999999999          5678888888888876544468999


Q ss_pred             EEEEeCCCCCCCC--------------CCCCHHHHHHHHH-----------hcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        213 LLVANKLDLASHQ--------------REVPTLDGQALAQ-----------SWGCPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       213 ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~-----------~~~~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      ++++||+|+....              ...+..+...++.           ..++.+++|||+++.|++++|+++.+.+.
T Consensus       264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~  343 (353)
T 1cip_A          264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  343 (353)
T ss_dssp             EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence            9999999985211              1245666766665           24577899999999999999999999986


Q ss_pred             cCC
Q psy10504        268 FNP  270 (286)
Q Consensus       268 ~~~  270 (286)
                      ...
T Consensus       344 ~~~  346 (353)
T 1cip_A          344 KNN  346 (353)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            543

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.82  E-value=6.2e-20  Score=158.86  Aligned_cols=165  Identities=15%  Similarity=0.152  Sum_probs=109.7

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCc-CCCccCC--CccceEEEEEEECCeEEEEEEEeCCCcccchhh--------
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGC-FMEKYDP--TIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM--------  168 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~-~~~~~~~--t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~--------  168 (286)
                      ...+.++|+|+|++|||||||+++|++.. +.....+  ++.+.....+..++..  +.+|||||+..+...        
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE--IVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEE--EEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCE--EEEEECcCCCCCCCCHHHHHHHH
Confidence            34467999999999999999999999876 4444433  3445556667777766  889999998765322        


Q ss_pred             ---hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhC-CCCCcEEEEEe-CCCCCCCCCCCCH-------HHHHHH
Q psy10504        169 ---RDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVAN-KLDLASHQREVPT-------LDGQAL  236 (286)
Q Consensus       169 ---~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~n-K~Dl~~~~~~~~~-------~~~~~~  236 (286)
                         ...+++.+|++++|+|+++....  ...++..+..... ....|.++|+| |+|+.+ .. ...       .+...+
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~~~~~--~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~-~~-~~~~i~~~~~~~~~~~  171 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG-GS-LMDYMHDSDNKALSKL  171 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTCCCHH--HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT-CC-HHHHHHHCCCHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEEeCCCCCHH--HHHHHHHHHHHhCchhhccEEEEEEcccccCC-cc-HHHHHHhcchHHHHHH
Confidence               23367899999999999862211  1122233333211 11357777776 999973 21 111       223335


Q ss_pred             HHhcCCCE-----EEEeCCCCCcHHHHHHHHHHHhhcCC
Q psy10504        237 AQSWGCPF-----IEASAKNKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       237 ~~~~~~~~-----~~vSa~~~~gv~~l~~~i~~~i~~~~  270 (286)
                      ....+..+     +++||++|.|++++|++|.+.+....
T Consensus       172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            55555332     78999999999999999999987654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.82  E-value=9.2e-20  Score=169.31  Aligned_cols=150  Identities=19%  Similarity=0.189  Sum_probs=102.0

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCc--CCCc----------cCCCcc----------------------ceEEEEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGC--FMEK----------YDPTIE----------------------DFYRKEIEV  147 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~----------~~~t~~----------------------~~~~~~~~~  147 (286)
                      ...++|+++|++++|||||+++|+...  +...          ..++++                      +.....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            356899999999999999999998643  1111          112211                      111122333


Q ss_pred             CCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCC-cEEEEEeCCCCCCCCC
Q psy10504        148 DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERV-PILLVANKLDLASHQR  226 (286)
Q Consensus       148 ~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~-piivv~nK~Dl~~~~~  226 (286)
                      ++  ..+.+||||||++|...+..++..+|++++|+|++++...+. ..++..+...    ++ |+++|+||+|+.+..+
T Consensus       102 ~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~~----~~~~iIvviNK~Dl~~~~~  174 (434)
T 1zun_B          102 AK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL----GIKHIVVAINKMDLNGFDE  174 (434)
T ss_dssp             SS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT----TCCEEEEEEECTTTTTSCH
T ss_pred             CC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc----CCCeEEEEEEcCcCCcccH
Confidence            33  458999999999999999999999999999999999764443 3333333331    44 6999999999973221


Q ss_pred             C-C--CHHHHHHHHHhcC-----CCEEEEeCCCCCcHHHH
Q psy10504        227 E-V--PTLDGQALAQSWG-----CPFIEASAKNKTNVNEM  258 (286)
Q Consensus       227 ~-~--~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~l  258 (286)
                      . .  ...+...+.+.++     ++++++||++|.|++++
T Consensus       175 ~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          175 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            1 1  1234455556666     67999999999999874

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.82  E-value=6.8e-20  Score=172.40  Aligned_cols=154  Identities=14%  Similarity=0.140  Sum_probs=97.0

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcC--cCCC------------------------------ccCCCccceEEEEEEECC
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSG--CFME------------------------------KYDPTIEDFYRKEIEVDK  149 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~------------------------------~~~~t~~~~~~~~~~~~~  149 (286)
                      ...++|+++|++|+|||||+++|+..  .+..                              ...+.+.+.....+..++
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            35799999999999999999999764  1111                              111222233334444444


Q ss_pred             eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHH---HHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC
Q psy10504        150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI---KQMKELITRVKGSERVPILLVANKLDLASHQR  226 (286)
Q Consensus       150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~---~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~  226 (286)
                        +.+.|||||||++|...+..+++.+|++|+|+|++++.+...+   .+....+.........|+++|+||+|+.+...
T Consensus       111 --~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~  188 (483)
T 3p26_A          111 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ  188 (483)
T ss_dssp             --CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCH
T ss_pred             --ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchH
Confidence              4489999999999999999999999999999999997543221   11111111111122347999999999973221


Q ss_pred             CCC---HHHHHHHHHhc-----CCCEEEEeCCCCCcHHH
Q psy10504        227 EVP---TLDGQALAQSW-----GCPFIEASAKNKTNVNE  257 (286)
Q Consensus       227 ~~~---~~~~~~~~~~~-----~~~~~~vSa~~~~gv~~  257 (286)
                      ...   ..+...+....     +++++++||++|.|+++
T Consensus       189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            111   11222222333     36799999999999874

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.82  E-value=2.7e-19  Score=153.01  Aligned_cols=165  Identities=16%  Similarity=0.201  Sum_probs=112.0

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccC---CCccceEEEEEEECCeEEEEEEEeCCCcc-----------cc
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYD---PTIEDFYRKEIEVDKAPCVLEILDTAGTE-----------QF  165 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~l~DtpG~~-----------~~  165 (286)
                      .....++|+++|++|+|||||+++|++..+.....   .++.+.....+.+++..  +.+|||||..           .+
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETE--LVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEE--EEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCce--EEEEECCCccCCCCCHHHHHHHH
Confidence            34567999999999999999999999977654433   34445566677777776  8899999943           34


Q ss_pred             hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCCCCCCC------HHHHHHHHH
Q psy10504        166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLDLASHQREVP------TLDGQALAQ  238 (286)
Q Consensus       166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~------~~~~~~~~~  238 (286)
                      ......+++.+|++++|+|+++... .. ..|+..+.... .....|+++|+||+|+.+. ..+.      ....+.+.+
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~-~~-~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~-~~~~~~i~~~~~~l~~l~~  179 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTE-EE-HKATEKILKMFGERARSFMILIFTRKDDLGD-TNLHDYLREAPEDIQDLMD  179 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSS-HH-HHHHHHHHHHHHHHHGGGEEEEEECGGGC-------------CHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCH-HH-HHHHHHHHHHhhhhccceEEEEEeCCccCCc-ccHHHHHHhchHHHHHHHH
Confidence            4455566788999999999976443 21 22333332211 1124699999999998633 2221      235677788


Q ss_pred             hcCCCEEEEeCCCC-----CcHHHHHHHHHHHhhcC
Q psy10504        239 SWGCPFIEASAKNK-----TNVNEMFAEIVREMNFN  269 (286)
Q Consensus       239 ~~~~~~~~vSa~~~-----~gv~~l~~~i~~~i~~~  269 (286)
                      ..+..++.+++..+     .++.++++.+.+.+.++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~  215 (239)
T 3lxx_A          180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN  215 (239)
T ss_dssp             HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence            88888888887754     68999999998888664

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.81  E-value=2.2e-19  Score=162.89  Aligned_cols=164  Identities=18%  Similarity=0.150  Sum_probs=111.5

Q ss_pred             EE-EEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc---------cchhhhhhcc
Q psy10504        105 FK-VVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE---------QFASMRDLYI  173 (286)
Q Consensus       105 ~k-V~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~---------~~~~~~~~~~  173 (286)
                      ++ |+++|++|+|||||+|+|.+..+ ..+...++.+.....+.+++..  +.+|||+|..         .|.... ..+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~--v~l~DT~G~i~~lp~~lve~f~~tl-~~~  255 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK--IMLVDTVGFIRGIPPQIVDAFFVTL-SEA  255 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE--EEEEECCCBCSSCCGGGHHHHHHHH-HGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE--EEEEeCCCchhcCCHHHHHHHHHHH-HHH
Confidence            44 99999999999999999998765 3345566667777888888865  7899999962         233333 357


Q ss_pred             cCccEEEEEEECCCcc--cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc---CCCEEEEe
Q psy10504        174 KNGQGFVVVYSLTNHH--TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW---GCPFIEAS  248 (286)
Q Consensus       174 ~~~d~vilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~vS  248 (286)
                      ..+|++++|+|++++.  ..+....|...+... ...+.|+++|+||+|+.+............+...+   +.+++++|
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S  334 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETLQSSFEILREI-GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS  334 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred             HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-CcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            8899999999999876  455555555555543 34578999999999997322100011122233444   24689999


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCCCC
Q psy10504        249 AKNKTNVNEMFAEIVREMNFNPEK  272 (286)
Q Consensus       249 a~~~~gv~~l~~~i~~~i~~~~~~  272 (286)
                      |+++.|+++++++|.+.+......
T Consensus       335 A~~g~gi~~L~~~I~~~l~~~~~~  358 (364)
T 2qtf_A          335 ALKRTNLELLRDKIYQLATQLSLE  358 (364)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHHC--
T ss_pred             CCCCcCHHHHHHHHHHHhcccCCC
Confidence            999999999999999988764433

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.80  E-value=2.7e-19  Score=159.42  Aligned_cols=128  Identities=13%  Similarity=0.119  Sum_probs=100.5

Q ss_pred             EEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECC----------CcccHHHHHHHHHHHHHHhCCCCCc
Q psy10504        142 RKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLT----------NHHTFQDIKQMKELITRVKGSERVP  211 (286)
Q Consensus       142 ~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p  211 (286)
                      ...+..++  +.+++|||+||+.++.+|..|+++++++|+|+|++          +..++++...|+..+.......++|
T Consensus       159 ~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~  236 (327)
T 3ohm_A          159 EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS  236 (327)
T ss_dssp             EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred             EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce
Confidence            34455555  45999999999999999999999999999999665          5677888888888877655556899


Q ss_pred             EEEEEeCCCCCCCC---------------CCCCHHHHHHHHH----------hcCCCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504        212 ILLVANKLDLASHQ---------------REVPTLDGQALAQ----------SWGCPFIEASAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       212 iivv~nK~Dl~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~vSa~~~~gv~~l~~~i~~~i  266 (286)
                      +++++||+|+.+..               +..+.+++..+..          ..++.++++||+++.|++.+|+.+.+.+
T Consensus       237 iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I  316 (327)
T 3ohm_A          237 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI  316 (327)
T ss_dssp             EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence            99999999985211               1355666666632          3446688999999999999999999998


Q ss_pred             hcCCC
Q psy10504        267 NFNPE  271 (286)
Q Consensus       267 ~~~~~  271 (286)
                      .+..-
T Consensus       317 l~~~l  321 (327)
T 3ohm_A          317 LQLNL  321 (327)
T ss_dssp             HHTTC
T ss_pred             HHHhH
Confidence            77553

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.79  E-value=1.5e-19  Score=164.27  Aligned_cols=146  Identities=9%  Similarity=0.028  Sum_probs=105.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL  185 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~  185 (286)
                      +|+++|++++|||||+++|.       ..+.+.+.....+..++..  +.+||||||++|......+++.+|++++|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~-------~~giTi~~~~~~~~~~~~~--i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG-------KKGTSSDITMYNNDKEGRN--MVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS-------EEEEESSSEEEEECSSSSE--EEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHH-------hCCEEEEeeEEEEecCCeE--EEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            99999999999999999998       1122223333444444444  9999999999998888888999999999999 


Q ss_pred             CCcccHHHHHHHHHHHHHHhCCCCCcE-EEEEe-CCCCCCCCCCCC--HHHHHHHHHhcC---CCEEE--EeCCC---CC
Q psy10504        186 TNHHTFQDIKQMKELITRVKGSERVPI-LLVAN-KLDLASHQREVP--TLDGQALAQSWG---CPFIE--ASAKN---KT  253 (286)
Q Consensus       186 ~~~~s~~~~~~~~~~i~~~~~~~~~pi-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~~~---~~~~~--vSa~~---~~  253 (286)
                      ++.. ......++..+...    ++|. ++++| |+|+ +. ....  ..+...+.+..+   +++++  +||++   +.
T Consensus        93 ~~g~-~~qt~e~~~~~~~~----~i~~~ivvvNNK~Dl-~~-~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~  165 (370)
T 2elf_A           93 PQGL-DAHTGECIIALDLL----GFKHGIIALTRSDST-HM-HAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE  165 (370)
T ss_dssp             TTCC-CHHHHHHHHHHHHT----TCCEEEEEECCGGGS-CH-HHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred             CCCC-cHHHHHHHHHHHHc----CCCeEEEEEEeccCC-CH-HHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence            6543 44445555544442    6787 89999 9998 32 1111  123333333333   68999  99999   99


Q ss_pred             cHHHHHHHHHHHhhc
Q psy10504        254 NVNEMFAEIVREMNF  268 (286)
Q Consensus       254 gv~~l~~~i~~~i~~  268 (286)
                      |++++++.|.+.++.
T Consensus       166 gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          166 GVDELKARINEVAEK  180 (370)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhccc
Confidence            999999999988764

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.79  E-value=2.5e-19  Score=161.67  Aligned_cols=120  Identities=11%  Similarity=0.168  Sum_probs=93.1

Q ss_pred             eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECC----------CcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCC
Q psy10504        150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLT----------NHHTFQDIKQMKELITRVKGSERVPILLVANKL  219 (286)
Q Consensus       150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~  219 (286)
                      ..+.+++|||+||+.|+.+|..++++++++|+|||++          +..++++...|+..+......+++|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5678999999999999999999999999999999998          788999999999888765444689999999999


Q ss_pred             CCCCCCC-CC-------------------CHHHHHHHHHh----------------cCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        220 DLASHQR-EV-------------------PTLDGQALAQS----------------WGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       220 Dl~~~~~-~~-------------------~~~~~~~~~~~----------------~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |+.+... .+                   +.++...++..                ..+.+++|||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9852110 01                   13444444322                123468999999999999999999


Q ss_pred             HHhhcC
Q psy10504        264 REMNFN  269 (286)
Q Consensus       264 ~~i~~~  269 (286)
                      +.+.+.
T Consensus       341 ~~I~~~  346 (354)
T 2xtz_A          341 ETLRRR  346 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.79  E-value=9.1e-20  Score=170.39  Aligned_cols=158  Identities=17%  Similarity=0.197  Sum_probs=104.0

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCC--------cccchhhh
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG--------TEQFASMR  169 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG--------~~~~~~~~  169 (286)
                      ..+..++|+++|++|||||||+|+|.+..+  ....++++.+.....+...+..  +.+|||||        ++++....
T Consensus        19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~~~~~   96 (456)
T 4dcu_A           19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYD--FNLIDTGGIDIGDEPFLAQIRQQA   96 (456)
T ss_dssp             ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSC--CEEECCCC------CCHHHHHHHH
T ss_pred             hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCce--EEEEECCCCCCcchHHHHHHHHHH
Confidence            345678999999999999999999998655  3445555555555555555554  89999999        77778888


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEe
Q psy10504        170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEAS  248 (286)
Q Consensus       170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vS  248 (286)
                      ..+++.+|++++|+|+.++.+..+  .++..+..   ..++|+++|+||+|+.+....     ...+ ...+ ...+++|
T Consensus        97 ~~~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~---~~~~pvilV~NK~D~~~~~~~-----~~e~-~~lg~~~~~~iS  165 (456)
T 4dcu_A           97 EIAMDEADVIIFMVNGREGVTAAD--EEVAKILY---RTKKPVVLAVNKLDNTEMRAN-----IYDF-YSLGFGEPYPIS  165 (456)
T ss_dssp             HHHHHHCSEEEEEEESSSCSCHHH--HHHHHHHT---TCCSCEEEEEECC--------------CCS-GGGSSSSEEECC
T ss_pred             HhhHhhCCEEEEEEeCCCCCChHH--HHHHHHHH---HcCCCEEEEEECccchhhhhh-----HHHH-HHcCCCceEEee
Confidence            889999999999999887544433  23333322   248999999999998622111     0111 1223 3567999


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCC
Q psy10504        249 AKNKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       249 a~~~~gv~~l~~~i~~~i~~~~  270 (286)
                      |++|.|++++++++.+.+.+..
T Consensus       166 A~~g~gv~~L~~~i~~~l~~~~  187 (456)
T 4dcu_A          166 GTHGLGLGDLLDAVAEHFKNIP  187 (456)
T ss_dssp             TTTCTTHHHHHHHHHTTGGGSC
T ss_pred             cccccchHHHHHHHHhhccccc
Confidence            9999999999999999886543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.79  E-value=2.1e-20  Score=175.09  Aligned_cols=155  Identities=18%  Similarity=0.184  Sum_probs=90.3

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhc--CcCCCc------------------------------cCCCccceEEEEEEECC
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVS--GCFMEK------------------------------YDPTIEDFYRKEIEVDK  149 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~~------------------------------~~~t~~~~~~~~~~~~~  149 (286)
                      ...++|+++|++++|||||+++|+.  +.+...                              ..+.+.+.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            4678999999999999999999974  222110                              01111111122344444


Q ss_pred             eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc---cHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCC
Q psy10504        150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH---TFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQ  225 (286)
Q Consensus       150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~  225 (286)
                      .  .+.+||||||++|...+..++..+|++|+|+|++++.   +|+...++...+.... ..++| +++|+||+|+.+..
T Consensus       121 ~--~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~vp~iivviNK~Dl~~~~  197 (467)
T 1r5b_A          121 R--RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQGINHLVVVINKMDEPSVQ  197 (467)
T ss_dssp             E--EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTTCSSEEEEEECTTSTTCS
T ss_pred             e--EEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcCCCEEEEEEECccCCCcc
Confidence            3  4899999999999999999999999999999999863   3322223333222221 12677 99999999996321


Q ss_pred             C-----CCCHHHHHHHHHhc-------CCCEEEEeCCCCCcHHHHH
Q psy10504        226 R-----EVPTLDGQALAQSW-------GCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       226 ~-----~~~~~~~~~~~~~~-------~~~~~~vSa~~~~gv~~l~  259 (286)
                      .     .....+...+.+..       +++++++||++|.|+++++
T Consensus       198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            1     01112344444444       3569999999999998755

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.79  E-value=8.5e-20  Score=169.58  Aligned_cols=153  Identities=18%  Similarity=0.235  Sum_probs=100.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC--cCCCc------------------------------cCCCccceEEEEEEECCe
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEK------------------------------YDPTIEDFYRKEIEVDKA  150 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~~~  150 (286)
                      ..++|+++|++|+|||||+++|+..  .+...                              ..+.+.+.....+..++ 
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~-   83 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK-   83 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC-
Confidence            5689999999999999999999864  22211                              11112222222333344 


Q ss_pred             EEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHH----HHHHHHhCCCCC-cEEEEEeCCCCCCCC
Q psy10504        151 PCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMK----ELITRVKGSERV-PILLVANKLDLASHQ  225 (286)
Q Consensus       151 ~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~----~~i~~~~~~~~~-piivv~nK~Dl~~~~  225 (286)
                       +.+.+||||||++|...+..+++.+|++|+|+|+++ .+++....|.    ..+..... .++ |+++++||+|+.+..
T Consensus        84 -~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~-~~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           84 -YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT-MGLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             -CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH-TTCTTCEEEEECGGGSSST
T ss_pred             -eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH-cCCCeEEEEEEcccCCCcc
Confidence             449999999999999999999999999999999999 5666433221    11111111 144 689999999997321


Q ss_pred             C-----CCCHHHHHHHHHhcC-----CCEEEEeCCCCCcHHHHH
Q psy10504        226 R-----EVPTLDGQALAQSWG-----CPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       226 ~-----~~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~l~  259 (286)
                      .     .....+...+.+..+     ++++++||++|+|+.+++
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence            1     111234455555555     679999999999998543

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.79  E-value=6.4e-19  Score=176.70  Aligned_cols=171  Identities=17%  Similarity=0.166  Sum_probs=115.7

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCc-------CCCc----------cCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGC-------FMEK----------YDPTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~-------~~~~----------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      ....++|+++|++++|||||+++|.+..       +...          ..+.+.+.  ..+.++.....+++||||||+
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdv--a~v~f~~~~~kI~IIDTPGHe  370 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINT--SHVEYDTPTRHYAHVDCPGHA  370 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CC--SCEEEECSSCEEEEEECCCHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEE--EEEEEcCCCEEEEEEECCChH
Confidence            3467999999999999999999998731       0000          00111111  112233333458999999999


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCC--CCHHHHHHHHHhc
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQRE--VPTLDGQALAQSW  240 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~--~~~~~~~~~~~~~  240 (286)
                      +|...+..+++.+|++|+|+|++++...+. ..++..+...    ++| +|+|+||+|+.++...  ....+...+.+..
T Consensus       371 dF~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l----gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~  445 (1289)
T 3avx_A          371 DYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV----GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQY  445 (1289)
T ss_dssp             HHHHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH----TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc----CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhc
Confidence            999999999999999999999999754443 3344444332    678 7899999999731111  1123344555555


Q ss_pred             C-----CCEEEEeCCCC--------CcHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504        241 G-----CPFIEASAKNK--------TNVNEMFAEIVREMNFNPEKDNASFC  278 (286)
Q Consensus       241 ~-----~~~~~vSa~~~--------~gv~~l~~~i~~~i~~~~~~~~~~~~  278 (286)
                      +     ++++++||++|        .|++++++.|.+.++......+.+++
T Consensus       446 G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr  496 (1289)
T 3avx_A          446 DFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFL  496 (1289)
T ss_dssp             TSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCGGGSCCE
T ss_pred             cccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCcccccccee
Confidence            4     68999999999        57999999999988754444444443

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.79  E-value=3.2e-19  Score=171.81  Aligned_cols=155  Identities=15%  Similarity=0.165  Sum_probs=102.6

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCc--------------------------------cCCCccceEEEEEEECC
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEK--------------------------------YDPTIEDFYRKEIEVDK  149 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~--------------------------------~~~t~~~~~~~~~~~~~  149 (286)
                      ...++|+++|++|+|||||+++|+.....-.                                ..+.+.+.....+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            4578999999999999999999986522110                                12223333344455555


Q ss_pred             eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc---cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC
Q psy10504        150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH---TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR  226 (286)
Q Consensus       150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~  226 (286)
                      ..  +.|||||||++|...+..+++.+|++|+|+|++++.   ++....++...+.........|+++|+||+|+.+...
T Consensus       245 ~~--~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          245 AN--FTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             CE--EEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred             ce--EEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence            44  899999999999999999999999999999998752   1111122333332222222345999999999973211


Q ss_pred             CC---CHHHHHHHHHhcC-----CCEEEEeCCCCCcHHHH
Q psy10504        227 EV---PTLDGQALAQSWG-----CPFIEASAKNKTNVNEM  258 (286)
Q Consensus       227 ~~---~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~l  258 (286)
                      ..   ...+...+....+     ++++++||++|.|++++
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            11   0122233333333     68999999999999876

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.78  E-value=7.3e-19  Score=164.24  Aligned_cols=151  Identities=17%  Similarity=0.184  Sum_probs=100.8

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcC--cCCCc------------------------------cCCCccceEEEEEEECC
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSG--CFMEK------------------------------YDPTIEDFYRKEIEVDK  149 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~~  149 (286)
                      ...++|+++|++++|||||+++|+..  .+...                              ..+.+.+.....+..++
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            35699999999999999999999863  22110                              01222222233344444


Q ss_pred             eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc---cHH---HHHHHHHHHHHHhCCCCCc-EEEEEeCCCCC
Q psy10504        150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH---TFQ---DIKQMKELITRVKGSERVP-ILLVANKLDLA  222 (286)
Q Consensus       150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~  222 (286)
                        ..+.+||||||++|...+..++..+|++|+|+|++++.   +|+   .....+..+..    .++| +++|+||+|+.
T Consensus        85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~  158 (458)
T 1f60_A           85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSV  158 (458)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGG
T ss_pred             --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccc
Confidence              45999999999999999999999999999999999863   221   12222222222    2565 99999999997


Q ss_pred             CCCCC---CCHHHHHHHHHhcC-----CCEEEEeCCCCCcHHHH
Q psy10504        223 SHQRE---VPTLDGQALAQSWG-----CPFIEASAKNKTNVNEM  258 (286)
Q Consensus       223 ~~~~~---~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~l  258 (286)
                      +....   ....+...+.+..+     ++++++||++|.|+.++
T Consensus       159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            21111   11223444445554     68999999999998743

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.77  E-value=8e-19  Score=144.43  Aligned_cols=114  Identities=16%  Similarity=0.266  Sum_probs=87.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCC---ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccC---
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFME---KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKN---  175 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~---  175 (286)
                      .+.++|+++|++|||||||++++.+..+..   .+.++++.      .+.+  +.+.+|||||++.+...+..++..   
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~------~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~  117 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA------DYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAK  117 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CCCC--TTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee------eecC--CeEEEEECCCCchHHHHHHHHHHhhcc
Confidence            356899999999999999999999976543   12222211      1123  348899999999998888887766   


Q ss_pred             -ccEEEEEEECC-CcccHHHHHHHHHHHHHHh---CCCCCcEEEEEeCCCCCC
Q psy10504        176 -GQGFVVVYSLT-NHHTFQDIKQMKELITRVK---GSERVPILLVANKLDLAS  223 (286)
Q Consensus       176 -~d~vilv~d~~-~~~s~~~~~~~~~~i~~~~---~~~~~piivv~nK~Dl~~  223 (286)
                       +|++++|+|++ +..+++.+..|+..+....   ..+++|+++|+||+|+.+
T Consensus       118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  170 (193)
T 2ged_A          118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  170 (193)
T ss_dssp             GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence             89999999999 8889999888887776543   335899999999999973

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.77  E-value=6e-20  Score=176.37  Aligned_cols=161  Identities=20%  Similarity=0.189  Sum_probs=89.8

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCc--CCCc------------------------------cCCCccceEEEEEEEC
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGC--FMEK------------------------------YDPTIEDFYRKEIEVD  148 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~  148 (286)
                      ....++|+++|++++|||||+++|+...  +...                              ..+++.+.....+..+
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            3457899999999999999999996411  1100                              1122223333334444


Q ss_pred             CeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc---cH---HHHHHHHHHHHHHhCCCCCc-EEEEEeCCCC
Q psy10504        149 KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH---TF---QDIKQMKELITRVKGSERVP-ILLVANKLDL  221 (286)
Q Consensus       149 ~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl  221 (286)
                      +  ..+.|||||||++|...+..++..+|++|+|+|++++.   .+   ......+..+..    .++| +|+|+||+|+
T Consensus       254 ~--~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl  327 (592)
T 3mca_A          254 K--KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDL  327 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGG
T ss_pred             C--eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccc
Confidence            3  45899999999999999999999999999999998753   11   111122222222    1565 9999999999


Q ss_pred             CCCCCCCC---HHHHHHHH-HhcCC-----CEEEEeCCCCCcHH--------------HHHHHHHHHhh
Q psy10504        222 ASHQREVP---TLDGQALA-QSWGC-----PFIEASAKNKTNVN--------------EMFAEIVREMN  267 (286)
Q Consensus       222 ~~~~~~~~---~~~~~~~~-~~~~~-----~~~~vSa~~~~gv~--------------~l~~~i~~~i~  267 (286)
                      .+......   ..+...+. +..++     +++++||++|.|+.              .|++.|...++
T Consensus       328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP  396 (592)
T ss_dssp             GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred             ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence            73222111   11222222 33343     69999999999998              78888776654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.77  E-value=1.4e-18  Score=157.26  Aligned_cols=125  Identities=15%  Similarity=0.147  Sum_probs=92.3

Q ss_pred             EEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCC----------cccHHHHHHHHHHHHHHhCCCCCcEE
Q psy10504        144 EIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTN----------HHTFQDIKQMKELITRVKGSERVPIL  213 (286)
Q Consensus       144 ~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pii  213 (286)
                      .+.+++  +.+++|||+|++.++..|..++++++++|+|+|+++          ..++++...|+..+.......++|+|
T Consensus       195 ~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piI  272 (362)
T 1zcb_A          195 DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII  272 (362)
T ss_dssp             EEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred             EeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEE
Confidence            344554  459999999999999999999999999999999999          77899999998888765444689999


Q ss_pred             EEEeCCCCCCCC---------------CCCCHHHHHHHHH-----------hcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        214 LVANKLDLASHQ---------------REVPTLDGQALAQ-----------SWGCPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       214 vv~nK~Dl~~~~---------------~~~~~~~~~~~~~-----------~~~~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      +++||+|+....               ...+..+...+..           ..++.+++|||+++.|++++|+++.+.+.
T Consensus       273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~  352 (362)
T 1zcb_A          273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL  352 (362)
T ss_dssp             EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence            999999985211               1245556655541           23467899999999999999999999886


Q ss_pred             cCC
Q psy10504        268 FNP  270 (286)
Q Consensus       268 ~~~  270 (286)
                      +..
T Consensus       353 ~~~  355 (362)
T 1zcb_A          353 HDN  355 (362)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.77  E-value=4.9e-19  Score=154.67  Aligned_cols=160  Identities=18%  Similarity=0.224  Sum_probs=90.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC-CCcc-------CCCcc-ceEEEEEEECCeEEEEEEEeCCCcc-------cch
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF-MEKY-------DPTIE-DFYRKEIEVDKAPCVLEILDTAGTE-------QFA  166 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~-------~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~-------~~~  166 (286)
                      ..++|+++|.+|+|||||+|+|++... ...+       .+|++ +.....+..++..+.+++|||||..       .+.
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            468999999999999999999877543 3333       33332 3333444455665679999999973       233


Q ss_pred             hhh-------hhccc-------------CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC
Q psy10504        167 SMR-------DLYIK-------------NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR  226 (286)
Q Consensus       167 ~~~-------~~~~~-------------~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~  226 (286)
                      .+.       ..|+.             .+|+++++++.++......-..++..+..     ++|+++|+||+|+.. ..
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~-~~  160 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLT-PE  160 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSC-HH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCC-HH
Confidence            332       22332             27789999977653222222223333322     789999999999862 11


Q ss_pred             CCC--HHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        227 EVP--TLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       227 ~~~--~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      +..  ...........+++++++||++++|+++++++|.+.++-
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~  204 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL  204 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence            111  122334445668899999999999999999999987653

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.75  E-value=4.4e-18  Score=152.16  Aligned_cols=124  Identities=15%  Similarity=0.128  Sum_probs=96.9

Q ss_pred             EEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECC----------CcccHHHHHHHHHHHHHHhCCCCCcE
Q psy10504        143 KEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLT----------NHHTFQDIKQMKELITRVKGSERVPI  212 (286)
Q Consensus       143 ~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~pi  212 (286)
                      ..+.+++  +.+++|||+||+.++.+|..|+++++++|+|+|++          +..++++...|+..+.......++|+
T Consensus       154 ~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~pi  231 (340)
T 4fid_A          154 YDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVK  231 (340)
T ss_dssp             EEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEE
T ss_pred             EEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeE
Confidence            3444444  45999999999999999999999999999999998          67889988888888877555568999


Q ss_pred             EEEEeCCCCCCCC--------------CCCCHHHHHHHH-Hhc--------------------------CCCEEEEeCCC
Q psy10504        213 LLVANKLDLASHQ--------------REVPTLDGQALA-QSW--------------------------GCPFIEASAKN  251 (286)
Q Consensus       213 ivv~nK~Dl~~~~--------------~~~~~~~~~~~~-~~~--------------------------~~~~~~vSa~~  251 (286)
                      ++++||+|+....              ...+.+++..+. ..+                          .+.++++||++
T Consensus       232 iLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~d  311 (340)
T 4fid_A          232 LIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATD  311 (340)
T ss_dssp             EEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTC
T ss_pred             EEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeC
Confidence            9999999985210              111344443332 222                          25678999999


Q ss_pred             CCcHHHHHHHHHHHhhc
Q psy10504        252 KTNVNEMFAEIVREMNF  268 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i~~  268 (286)
                      +.|++.+|+.+.+.+.+
T Consensus       312 t~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          312 GSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            99999999999998876

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.75  E-value=1.7e-17  Score=162.08  Aligned_cols=116  Identities=17%  Similarity=0.125  Sum_probs=85.2

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcC--cCC------C-----c------cCCCccceEEEEEEECCeEEEEEEEeCCC
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSG--CFM------E-----K------YDPTIEDFYRKEIEVDKAPCVLEILDTAG  161 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~------~-----~------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG  161 (286)
                      ..+..+|+|+|++|+|||||+++|+..  .+.      .     +      ....+.......+.+.+.  .+.+|||||
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~--~i~liDTPG   86 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDH--RINIIDTPG   86 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTE--EEEEECCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCe--EEEEEECcC
Confidence            346789999999999999999999841  110      0     0      111111222334445544  489999999


Q ss_pred             cccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       162 ~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                      |.+|...+..+++.+|++|+|+|++++.+.+....|......     ++|+++|+||+|+..
T Consensus        87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~  143 (691)
T 1dar_A           87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTG  143 (691)
T ss_dssp             STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTT
T ss_pred             ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence            999999999999999999999999998888877666543322     789999999999874

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.74  E-value=2.7e-19  Score=162.23  Aligned_cols=159  Identities=21%  Similarity=0.304  Sum_probs=84.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC-cCCCccC--------CCcc-ceEEEEEEECCeEEEEEEEeCCCc-------ccc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG-CFMEKYD--------PTIE-DFYRKEIEVDKAPCVLEILDTAGT-------EQF  165 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~-~~~~~~~--------~t~~-~~~~~~~~~~~~~~~l~l~DtpG~-------~~~  165 (286)
                      ..++|+++|++|+|||||+++|.+. .+...+.        +|++ +.....+..++..+.+++|||||+       +.|
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            4589999999999999999998764 3333321        2222 222333445566678999999999       667


Q ss_pred             hhhhh-------hcccCccEE-----------EEEEECCC-cccHHHHHH-HHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504        166 ASMRD-------LYIKNGQGF-----------VVVYSLTN-HHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQ  225 (286)
Q Consensus       166 ~~~~~-------~~~~~~d~v-----------ilv~d~~~-~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~~  225 (286)
                      ..++.       .|++.++++           +++|++++ ..++..+.. ++..+     ..++|+|+|+||+|+. ..
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~-~~  189 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTL-TL  189 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSS-CH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-----ccCCCEEEEEECCCCC-CH
Confidence            76665       555544332           35555544 344444442 22222     2479999999999997 22


Q ss_pred             CCCCH--HHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        226 REVPT--LDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       226 ~~~~~--~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      +.+..  .+....++..+++++++||+++.| ++.|.++.+.+.+
T Consensus       190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~  233 (361)
T 2qag_A          190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA  233 (361)
T ss_dssp             HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence            22222  344555566789999999999998 8888777777654

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.74  E-value=3.2e-18  Score=150.69  Aligned_cols=158  Identities=16%  Similarity=0.183  Sum_probs=100.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCcc------CCC-----------------------ccc--------------
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKY------DPT-----------------------IED--------------  139 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~------~~t-----------------------~~~--------------  139 (286)
                      ..++|+++|.+|||||||+++|.+..+.+..      .++                       +.+              
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            4589999999999999999999998764211      121                       100              


Q ss_pred             ---------eEEEEEEECCeEEEEEEEeCCCcc-------------cchhhhhhcccCccEEE-EEEECCCcccHHHHHH
Q psy10504        140 ---------FYRKEIEVDKAPCVLEILDTAGTE-------------QFASMRDLYIKNGQGFV-VVYSLTNHHTFQDIKQ  196 (286)
Q Consensus       140 ---------~~~~~~~~~~~~~~l~l~DtpG~~-------------~~~~~~~~~~~~~d~vi-lv~d~~~~~s~~~~~~  196 (286)
                               .....+...+ ...+.+|||||..             .+..+...+++.++.++ +|+|+++..+..+...
T Consensus       105 g~~~gi~~~~~~~~~~~~~-~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             ccCCCccccceEEEEeCCC-CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                     0000111111 1348999999964             34556777888888766 7999988655444333


Q ss_pred             HHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc--C-CCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504        197 MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW--G-CPFIEASAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       197 ~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~-~~~~~vSa~~~~gv~~l~~~i~~~i  266 (286)
                      +...+.    ..+.|+++|+||+|+.+.... .....+......  + .+++++||++|.|+++++++|.+..
T Consensus       184 ~~~~~~----~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          184 IAKEVD----PQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHHC----TTCSSEEEEEECGGGSCTTCC-CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHhC----CCCCeEEEEEEccccCCCCch-HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            333332    247899999999999733221 121111100011  2 3678999999999999999998743

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.74  E-value=5e-17  Score=154.09  Aligned_cols=114  Identities=16%  Similarity=0.182  Sum_probs=79.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC--cCC------Cc--cCCCc-------------cceEEEEEEECCeEEEEEEEeC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG--CFM------EK--YDPTI-------------EDFYRKEIEVDKAPCVLEILDT  159 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~------~~--~~~t~-------------~~~~~~~~~~~~~~~~l~l~Dt  159 (286)
                      +..+|+++|++|+|||||+++|+..  .+.      ..  ...+.             .......+...+.  .+.+|||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~--~i~liDT   89 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDC--LVNLLDT   89 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTE--EEEEECC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCe--EEEEEEC
Confidence            5689999999999999999999863  110      00  00011             1111233444444  4899999


Q ss_pred             CCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       160 pG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                      |||.+|......+++.+|++|+|+|++++...+.. .++..    ....++|+++++||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~-~~~~~----~~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR-KLMEV----TRLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHHH----HTTTTCCEEEEEECTTSCC
T ss_pred             CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHH-HHHHH----HHHcCCCEEEEEcCcCCcc
Confidence            99999999888999999999999999987543332 22222    2234889999999999974

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.74  E-value=8.1e-18  Score=140.30  Aligned_cols=161  Identities=16%  Similarity=0.147  Sum_probs=98.9

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccce-EEEEEEECCeEEEEEEEeCCCccc----------chhhhh
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDF-YRKEIEVDKAPCVLEILDTAGTEQ----------FASMRD  170 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~DtpG~~~----------~~~~~~  170 (286)
                      ....+|+++|++|||||||++++.+..+.....++.+.. ....+.+++ .  +.+|||||+..          +.....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-G--KRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-T--EEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-C--EEEEECcCCcccccCHHHHHHHHHHHH
Confidence            356899999999999999999999876433333333211 122333333 2  67899999742          233333


Q ss_pred             hcc---cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHhcC--CCE
Q psy10504        171 LYI---KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ-REVPTLDGQALAQSWG--CPF  244 (286)
Q Consensus       171 ~~~---~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~--~~~  244 (286)
                      .++   ..++++++++|++++.+..+. .....+..    .++|+++|+||+|+.+.. +.........+....+  +.+
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~  175 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV  175 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH----cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce
Confidence            344   578999999999987655321 11112222    378999999999986321 1111223334444443  567


Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhhcCC
Q psy10504        245 IEASAKNKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       245 ~~vSa~~~~gv~~l~~~i~~~i~~~~  270 (286)
                      +++||+++.|+++++++|.+.+.+.+
T Consensus       176 ~~~Sal~~~~~~~l~~~l~~~~~~~~  201 (210)
T 1pui_A          176 ETFSSLKKQGVDKLRQKLDTWFSEMQ  201 (210)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHC---
T ss_pred             EEEeecCCCCHHHHHHHHHHHHhhcc
Confidence            89999999999999999999876644

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.73  E-value=5.2e-17  Score=158.06  Aligned_cols=113  Identities=18%  Similarity=0.136  Sum_probs=81.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccC-------------------CCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYD-------------------PTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      +..+|+++|+.|+|||||+++|..........                   ..+.......+...+  +.+++||||||.
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG~~   85 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYG   85 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSG
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCCcc
Confidence            56799999999999999999998532211111                   111122233344444  458999999999


Q ss_pred             cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      +|...+..+++.+|++++|+|++++...+.. .++..+..    .++|+++|+||+|+.
T Consensus        86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             chHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----ccCCEEEEecCCchh
Confidence            9999999999999999999999887655544 33333333    278999999999986

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.72  E-value=6.8e-17  Score=158.02  Aligned_cols=117  Identities=17%  Similarity=0.128  Sum_probs=83.7

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcC--cCCCc-----------------cCCCccceEEEEEEECC-----eEEEEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSG--CFMEK-----------------YDPTIEDFYRKEIEVDK-----APCVLEIL  157 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~-----------------~~~t~~~~~~~~~~~~~-----~~~~l~l~  157 (286)
                      .+..+|+|+|+.|+|||||+++|+..  .+...                 ..+.+.......+.+++     ..+.++||
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            45689999999999999999999752  11110                 00111111112233332     33669999


Q ss_pred             eCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        158 DTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       158 DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                      |||||.+|...+..+++.+|++|+|+|++++...+....|... ..    .++|+++|+||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~-~~----~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA-NK----YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHH-HH----cCCCEEEEEeCCCccc
Confidence            9999999999999999999999999999998766665554332 22    2789999999999863

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.72  E-value=8.2e-17  Score=139.60  Aligned_cols=118  Identities=20%  Similarity=0.190  Sum_probs=88.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhccc------
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIK------  174 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~------  174 (286)
                      +.++|+++|++|+|||||+++|++..+  ...+.+++.......+..++..  +++|||||+.++......+++      
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFT--INIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEE--EEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCee--EEEEECCCCCCcccchHHHHHHHHHHH
Confidence            579999999999999999999999764  4556666666667777777775  899999999888765544443      


Q ss_pred             ---CccEEEEEEECCCcccHHHHHHHHHHHHHHhCC-CCCcEEEEEeCCCCC
Q psy10504        175 ---NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGS-ERVPILLVANKLDLA  222 (286)
Q Consensus       175 ---~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~  222 (286)
                         .+|++++|+++++....+.-..|+..+...... ...|+++|+||+|+.
T Consensus       113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~  164 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS  164 (262)
T ss_dssp             TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred             hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence               789999999998765333334666666654321 124999999999996

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.72  E-value=5.4e-17  Score=158.57  Aligned_cols=115  Identities=17%  Similarity=0.158  Sum_probs=85.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhc--CcCCC-----------c------cCCCccceEEEEEEECCeEEEEEEEeCCCc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVS--GCFME-----------K------YDPTIEDFYRKEIEVDKAPCVLEILDTAGT  162 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~-----------~------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~  162 (286)
                      .+..+|+|+|++|+|||||+++|+.  +.+..           +      ...++.......+.+++..  +.+|||||+
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~--i~liDTPG~   85 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHR--VNIIDTPGH   85 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEE--EEEECCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCee--EEEEECcCC
Confidence            4578999999999999999999985  22210           0      0111112223345555544  899999999


Q ss_pred             ccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       163 ~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                      .+|...+..+++.+|++++|+|++++.+.+....|.. +..    .++|+++|+||+|+..
T Consensus        86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~----~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT----YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred             cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence            9999999999999999999999999888877766554 333    2789999999999874

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.69  E-value=4.5e-16  Score=148.13  Aligned_cols=114  Identities=18%  Similarity=0.184  Sum_probs=86.5

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC--c----------------CCC-----ccCCCccceEEEEEEECCeEEEEEEEeC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG--C----------------FME-----KYDPTIEDFYRKEIEVDKAPCVLEILDT  159 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~----------------~~~-----~~~~t~~~~~~~~~~~~~~~~~l~l~Dt  159 (286)
                      +.-+|+|+||.++|||||..+|+..  .                +..     ...+-+.......+.+++..  ++|+||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~--iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRV--VNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEE--EEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEE--EEEEeC
Confidence            5578999999999999999999631  1                000     01111112223445666655  899999


Q ss_pred             CCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       160 pG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                      |||.+|..-..+.++.+|++|+|+|+.++...+....|......     ++|.++++||+|...
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~-----~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR-----ATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh-----CCceEEEEecccchh
Confidence            99999999999999999999999999999888887777665554     899999999999864

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.68  E-value=2.6e-16  Score=139.65  Aligned_cols=114  Identities=19%  Similarity=0.219  Sum_probs=71.8

Q ss_pred             EEEEEeCCCccc-------------chhhhhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeC
Q psy10504        153 VLEILDTAGTEQ-------------FASMRDLYIKNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANK  218 (286)
Q Consensus       153 ~l~l~DtpG~~~-------------~~~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK  218 (286)
                      .+.+|||||..+             +......+++.+|++++|+|+.+.. ...+...+...+    ...+.|+++|+||
T Consensus       132 ~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~----~~~~~~~i~v~NK  207 (315)
T 1jwy_B          132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV----DPEGKRTIGVITK  207 (315)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH----CSSCSSEEEEEEC
T ss_pred             CcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh----CCCCCcEEEEEcC
Confidence            489999999753             4456677889999999999974432 111111222222    2247899999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC---C---CCcHHHHHHHHHHHhhcCCC
Q psy10504        219 LDLASHQREVPTLDGQALAQSWGCPFIEASAK---N---KTNVNEMFAEIVREMNFNPE  271 (286)
Q Consensus       219 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~---~---~~gv~~l~~~i~~~i~~~~~  271 (286)
                      +|+.+.... ............+..++++|+.   +   +.|++++++.+.+.++..+.
T Consensus       208 ~Dl~~~~~~-~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~  265 (315)
T 1jwy_B          208 LDLMDKGTD-AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI  265 (315)
T ss_dssp             TTSSCSSCC-CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred             cccCCcchH-HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence            999733321 1211111001122566666655   4   78999999999999887654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.68  E-value=3.5e-16  Score=143.83  Aligned_cols=162  Identities=15%  Similarity=0.149  Sum_probs=113.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccc----hhhhhhc---ccCc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF----ASMRDLY---IKNG  176 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~----~~~~~~~---~~~~  176 (286)
                      ..|+++|++|||||||++++.+... ...++.++.......+..++ ...+.+||+||..+.    ..+...+   +..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            3589999999999999999988643 34455554444445555554 123889999997432    2222222   4569


Q ss_pred             cEEEEEEECCCcccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcH
Q psy10504        177 QGFVVVYSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV  255 (286)
Q Consensus       177 d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv  255 (286)
                      +.++.++|++ ...++++..+...+..+. ...+.|.++|+||+|+...   .............+.+++.+||++++|+
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~~g~~vi~iSA~~g~gi  312 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAREGLAVLPVSALTGAGL  312 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHHhcCCeEEEEECCCccCH
Confidence            9999999998 566677776666555432 1125799999999998722   1222333444455789999999999999


Q ss_pred             HHHHHHHHHHhhcCCC
Q psy10504        256 NEMFAEIVREMNFNPE  271 (286)
Q Consensus       256 ~~l~~~i~~~i~~~~~  271 (286)
                      ++++++|.+.+.+.+.
T Consensus       313 ~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          313 PALKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999976554

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.67  E-value=2.1e-16  Score=154.45  Aligned_cols=162  Identities=15%  Similarity=0.224  Sum_probs=108.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCC-ccCCCccceE--------EEEEEE--------------------------
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFME-KYDPTIEDFY--------RKEIEV--------------------------  147 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~~~t~~~~~--------~~~~~~--------------------------  147 (286)
                      ..++|+|+|++|+|||||+|+|++..+.. ...+++....        ..+..+                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            56999999999999999999999876432 3333331110        001111                          


Q ss_pred             --------------------CCeE--EEEEEEeCCCccc---chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHH
Q psy10504        148 --------------------DKAP--CVLEILDTAGTEQ---FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELIT  202 (286)
Q Consensus       148 --------------------~~~~--~~l~l~DtpG~~~---~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~  202 (286)
                                          +...  ..+.+|||||...   .......+++.+|++++|+|++++.+..+...|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                                1100  2388999999765   34456678899999999999999888777665544432


Q ss_pred             HHhCCCCCcEEEEEeCCCCCCCCC--CCCHHH-------HH-----HHHHh--------cCCCEEEEeCC----------
Q psy10504        203 RVKGSERVPILLVANKLDLASHQR--EVPTLD-------GQ-----ALAQS--------WGCPFIEASAK----------  250 (286)
Q Consensus       203 ~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~-------~~-----~~~~~--------~~~~~~~vSa~----------  250 (286)
                      .    .+.|+++|+||+|+.....  ......       ..     .+...        ...++++|||+          
T Consensus       228 ~----~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~  303 (695)
T 2j69_A          228 G----RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP  303 (695)
T ss_dssp             T----SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred             h----hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence            2    2679999999999863210  001000       11     11111        12479999999          


Q ss_pred             ----CCCcHHHHHHHHHHHhhc
Q psy10504        251 ----NKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       251 ----~~~gv~~l~~~i~~~i~~  268 (286)
                          ++.|++++++.|.+.+..
T Consensus       304 ~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          304 QADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             TCCCTTSSHHHHHHHHHHHHHH
T ss_pred             hhhhhccCHHHHHHHHHHHHHH
Confidence                999999999999987754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.67  E-value=3.1e-17  Score=145.17  Aligned_cols=134  Identities=14%  Similarity=0.157  Sum_probs=110.0

Q ss_pred             HHHHHHhcCcCC-CccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc-cHHHHHH
Q psy10504        119 ALTVQFVSGCFM-EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH-TFQDIKQ  196 (286)
Q Consensus       119 SLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~  196 (286)
                      +|+.+++.+.|. ..+.+|+++.....+..++   .+++||+  +++|+.+++.+++++|++++|||++++. +++.+..
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~  106 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK  106 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH
Confidence            688888889998 8899999987765433333   3889999  9999999999999999999999999987 7888888


Q ss_pred             HHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--CCEEEEeCCCCCcHHHHHHHHHH
Q psy10504        197 MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG--CPFIEASAKNKTNVNEMFAEIVR  264 (286)
Q Consensus       197 ~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~gv~~l~~~i~~  264 (286)
                      |+..+..    .++|+++|+||+|+.+ .+.  ..+.+.+++.++  .++++|||++|.|++++|+.+..
T Consensus       107 ~l~~~~~----~~~piilv~NK~DL~~-~~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          107 FLVLAEK----NELETVMVINKMDLYD-EDD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHH----TTCEEEEEECCGGGCC-HHH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHH----CCCCEEEEEeHHHcCC-chh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            9887655    3789999999999972 222  134556666666  89999999999999999988754

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.66  E-value=2.4e-17  Score=151.04  Aligned_cols=84  Identities=17%  Similarity=0.129  Sum_probs=48.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEE---------------------ECC-eEEEEEEEeCCC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIE---------------------VDK-APCVLEILDTAG  161 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~---------------------~~~-~~~~l~l~DtpG  161 (286)
                      ++|+++|.+|||||||+|+|.+... ...++.++.+.......                     +++ ..+.+.||||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            4899999999999999999998763 34555555443333211                     122 245699999999


Q ss_pred             ccc----chhhhh---hcccCccEEEEEEECCCc
Q psy10504        162 TEQ----FASMRD---LYIKNGQGFVVVYSLTNH  188 (286)
Q Consensus       162 ~~~----~~~~~~---~~~~~~d~vilv~d~~~~  188 (286)
                      +.+    ...+..   .+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            854    222333   456899999999999875

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.66  E-value=2.2e-15  Score=131.08  Aligned_cols=117  Identities=18%  Similarity=0.206  Sum_probs=83.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhh-------hc-
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRD-------LY-  172 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~-------~~-  172 (286)
                      ..++|+++|.+|+|||||+|+|++..+  .....+++.+.....+..++..  +.+|||||+.++..+..       .+ 
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFT--LNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEE--EEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeE--EEEEECCCCCCCccchHHHHHHHHHHh
Confidence            569999999999999999999998765  3444555555555556666555  89999999987654322       12 


Q ss_pred             -ccCccEEEEEEECCCcccHHH-HHHHHHHHHHHhCC-CCCcEEEEEeCCCCC
Q psy10504        173 -IKNGQGFVVVYSLTNHHTFQD-IKQMKELITRVKGS-ERVPILLVANKLDLA  222 (286)
Q Consensus       173 -~~~~d~vilv~d~~~~~s~~~-~~~~~~~i~~~~~~-~~~piivv~nK~Dl~  222 (286)
                       .+.+|++++|+|+++.. +.. -..|+..+...... ..+|+++|+||+|+.
T Consensus       116 ~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~  167 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS  167 (270)
T ss_dssp             TTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred             hcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence             34799999999997643 332 33566666553221 126999999999986

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.65  E-value=2.1e-16  Score=143.19  Aligned_cols=157  Identities=15%  Similarity=0.167  Sum_probs=102.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceE-----------------------------------------
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFY-----------------------------------------  141 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~-----------------------------------------  141 (286)
                      -++|+|+|++|||||||+++|.+..+.+...++.+ ...                                         
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  113 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR  113 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence            34999999999999999999999776433322221 000                                         


Q ss_pred             -------------EEEEEECCeEEEEEEEeCCCcccc-------------hhhhhhcccCccEEEEEEECCCcccHHHHH
Q psy10504        142 -------------RKEIEVDKAPCVLEILDTAGTEQF-------------ASMRDLYIKNGQGFVVVYSLTNHHTFQDIK  195 (286)
Q Consensus       142 -------------~~~~~~~~~~~~l~l~DtpG~~~~-------------~~~~~~~~~~~d~vilv~d~~~~~s~~~~~  195 (286)
                                   ...+.... ...+++|||||...+             ..+...|++.+|++++|+|..+.....  .
T Consensus       114 ~~g~~~~~s~~~i~l~i~~~~-~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          114 ETGRSKAISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             TSCTTCCCCCSCEEEEEEETT-SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             hcCCCCCcccceEEEEEeCCC-CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                         01111111 123889999998876             556778899999999999876533221  2


Q ss_pred             HHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHH
Q psy10504        196 QMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE  265 (286)
Q Consensus       196 ~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~  265 (286)
                      .|+..+.. ....+.|+++|+||+|+.+. ........+......+.+++++|+.++.++++.++.....
T Consensus       191 ~~~~l~~~-~~~~~~~~i~V~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~  258 (360)
T 3t34_A          191 DAIKISRE-VDPSGDRTFGVLTKIDLMDK-GTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAAR  258 (360)
T ss_dssp             HHHHHHHH-SCTTCTTEEEEEECGGGCCT-TCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHH
T ss_pred             HHHHHHHH-hcccCCCEEEEEeCCccCCC-cccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHH
Confidence            33333333 23347899999999999733 2223333333344566889999999999998876654443

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.63  E-value=1.1e-16  Score=141.52  Aligned_cols=160  Identities=20%  Similarity=0.281  Sum_probs=85.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC-cCCCcc--------CCCcc-ceEEEEEEECCeEEEEEEEeCCCc-------ccc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG-CFMEKY--------DPTIE-DFYRKEIEVDKAPCVLEILDTAGT-------EQF  165 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~-~~~~~~--------~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~-------~~~  165 (286)
                      -.++|+++|++|+|||||++++.+. .+....        .++.. .........++....+++|||+|.       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            4589999999999999999998874 443322        11211 122233333455667999999998       555


Q ss_pred             hhhhh-------hcccCc-------------cEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504        166 ASMRD-------LYIKNG-------------QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ  225 (286)
Q Consensus       166 ~~~~~-------~~~~~~-------------d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~  225 (286)
                      ..+..       .+++..             ++++++.+.+. .+++...  ...+....  .++|+++|+||.|+.. .
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~--~~~~iilV~~K~Dl~~-~  170 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIH--NKVNIVPVIAKADTLT-L  170 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHT--TTSCEEEEECCGGGSC-H
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHH--hcCCEEEEEEeCCCCC-H
Confidence            55544       444332             33444444322 2333333  13333322  3689999999999872 2


Q ss_pred             CCC--CHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504        226 REV--PTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       226 ~~~--~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~  269 (286)
                      ++.  ...+....++..+++++++||+++ |++++|+++.+.+.+.
T Consensus       171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence            221  234566777888999999999999 9999999999988653

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.61  E-value=2.2e-16  Score=153.01  Aligned_cols=163  Identities=17%  Similarity=0.201  Sum_probs=113.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc--CcCCCc----cCCCcc-------------ceEEEEEEECCeEEEEEEEeCCCcccc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS--GCFMEK----YDPTIE-------------DFYRKEIEVDKAPCVLEILDTAGTEQF  165 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~--~~~~~~----~~~t~~-------------~~~~~~~~~~~~~~~l~l~DtpG~~~~  165 (286)
                      -+|+|+||.++|||||..+|+.  +.+...    ...+..             ......+.+++..  ++++|||||.+|
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~--iNlIDTPGH~DF   80 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTK--VNIIDTPGHMDF   80 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCB--CCCEECCCSSST
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEE--EEEEECCCcHHH
Confidence            3689999999999999999974  211110    000111             1112233444544  899999999999


Q ss_pred             hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC-----------------
Q psy10504        166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREV-----------------  228 (286)
Q Consensus       166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~-----------------  228 (286)
                      .....+.++.+|++|+|+|+.++...+...-|......     ++|.++++||+|....+...                 
T Consensus        81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~-----~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~  155 (638)
T 3j25_A           81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM-----GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ  155 (638)
T ss_dssp             HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH-----TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCC
T ss_pred             HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccc
Confidence            99999999999999999999998887777666666555     88999999999986332110                 


Q ss_pred             --------------CHHHHHH------------------------------HHHhcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504        229 --------------PTLDGQA------------------------------LAQSWGCPFIEASAKNKTNVNEMFAEIVR  264 (286)
Q Consensus       229 --------------~~~~~~~------------------------------~~~~~~~~~~~vSa~~~~gv~~l~~~i~~  264 (286)
                                    .....+.                              +....-.|++..||+++.|++.+++.|.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~  235 (638)
T 3j25_A          156 KVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITN  235 (638)
T ss_dssp             CCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHH
T ss_pred             eeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhc
Confidence                          0000000                              01111268889999999999999999999


Q ss_pred             HhhcCCCCcC
Q psy10504        265 EMNFNPEKDN  274 (286)
Q Consensus       265 ~i~~~~~~~~  274 (286)
                      .++......+
T Consensus       236 ~~p~p~~~~~  245 (638)
T 3j25_A          236 KFYSSTHRGP  245 (638)
T ss_dssp             SCCCSGGGSC
T ss_pred             cccCcccchh
Confidence            8876554433

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.61  E-value=1.3e-15  Score=139.17  Aligned_cols=125  Identities=14%  Similarity=0.157  Sum_probs=98.0

Q ss_pred             EEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCC----------cccHHHHHHHHHHHHHHhCCCCCcE
Q psy10504        143 KEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTN----------HHTFQDIKQMKELITRVKGSERVPI  212 (286)
Q Consensus       143 ~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pi  212 (286)
                      ..+.+++  +.+++|||+|++.++.+|..|+++++++|+|||+++          ..++++...|+..+......+++|+
T Consensus       210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi  287 (402)
T 1azs_C          210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV  287 (402)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred             EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence            4556665  559999999999999999999999999999999999          8899999999999887555568999


Q ss_pred             EEEEeCCCCCCCCC--CC---------------------------CHHHHHHHH-----Hh--------cCCCEEEEeCC
Q psy10504        213 LLVANKLDLASHQR--EV---------------------------PTLDGQALA-----QS--------WGCPFIEASAK  250 (286)
Q Consensus       213 ivv~nK~Dl~~~~~--~~---------------------------~~~~~~~~~-----~~--------~~~~~~~vSa~  250 (286)
                      ++|+||+|+.....  ..                           ...++..++     ..        ..+.+++|||+
T Consensus       288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~  367 (402)
T 1azs_C          288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV  367 (402)
T ss_dssp             EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred             EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence            99999999852110  01                           123343332     21        23557899999


Q ss_pred             CCCcHHHHHHHHHHHhhcC
Q psy10504        251 NKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       251 ~~~gv~~l~~~i~~~i~~~  269 (286)
                      ++.||+++|+++.+.+...
T Consensus       368 d~~nV~~vF~~v~~~I~~~  386 (402)
T 1azs_C          368 DTENIRRVFNDCRDIIQRM  386 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHHHHHH
Confidence            9999999999999887653

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.61  E-value=1.6e-15  Score=150.99  Aligned_cols=116  Identities=22%  Similarity=0.240  Sum_probs=86.5

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcC--cCCCc---------------cC-CCcc-ceEEEEEE------------ECCe
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSG--CFMEK---------------YD-PTIE-DFYRKEIE------------VDKA  150 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~---------------~~-~t~~-~~~~~~~~------------~~~~  150 (286)
                      .+..+|+|+|++|+|||||+++|+..  .....               .. .|+. ......+.            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            35689999999999999999999863  11110               00 0111 11112222            2344


Q ss_pred             EEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        151 PCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       151 ~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      .+.+++||||||.+|...+..+++.+|++|+|+|++++.+.+....|......     ++|+++|+||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~-----~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE-----RIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCeEEEEECCCcc
Confidence            67799999999999999999999999999999999999888887666554432     78999999999986

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.60  E-value=1e-15  Score=140.76  Aligned_cols=159  Identities=18%  Similarity=0.265  Sum_probs=81.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCC-Ccc-------CCCcc-ceEEEEEEECCeEEEEEEEeCCCcccch-------
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFM-EKY-------DPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFA-------  166 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~-------~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~-------  166 (286)
                      -.++|+|+|++|+|||||++.|++..+. ..+       .+++. +.....+...+....+++||++|...+.       
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            4588999999999999999999987653 211       11221 1122223334455579999999976531       


Q ss_pred             h------------------hhhhcccCccEEEEEEECCCc-ccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC
Q psy10504        167 S------------------MRDLYIKNGQGFVVVYSLTNH-HTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQR  226 (286)
Q Consensus       167 ~------------------~~~~~~~~~d~vilv~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~  226 (286)
                      .                  +...++.++++.+++|+.+.. .++.... .|+..+.     .++|+|+|+||+|+. ..+
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll-~~~  183 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTL-TPE  183 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSS-CHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCc-cHH
Confidence            1                  123355666665555555432 3444443 3444442     278999999999987 223


Q ss_pred             CCCH--HHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        227 EVPT--LDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       227 ~~~~--~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      .+..  ......+...+++++++||+++.+++++|..+.+.++
T Consensus       184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred             HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence            2222  3455566677899999999999999999988887654

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.58  E-value=2e-14  Score=140.86  Aligned_cols=115  Identities=17%  Similarity=0.087  Sum_probs=85.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC--------cCCCc-----------cCCCccceEEEEEEECC-----eEEEEEEEe
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG--------CFMEK-----------YDPTIEDFYRKEIEVDK-----APCVLEILD  158 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~--------~~~~~-----------~~~t~~~~~~~~~~~~~-----~~~~l~l~D  158 (286)
                      +.-+|+|+||.++|||||..+|+..        .....           ..+-+.......+.+.+     ..+.++++|
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID   91 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID   91 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence            4557999999999999999999741        11110           00001111122333332     356799999


Q ss_pred             CCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        159 TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       159 tpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      ||||.+|..-..+.++.+|++|+|+|+..+...+...-|......     ++|.++++||+|..
T Consensus        92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~-----~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY-----GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH-----TCCEEEEEECSSST
T ss_pred             CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEcccccc
Confidence            999999999999999999999999999999888888777777666     89999999999986

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.57  E-value=3e-16  Score=141.88  Aligned_cols=156  Identities=17%  Similarity=0.179  Sum_probs=92.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccC------CC-----------------------ccc--------------
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYD------PT-----------------------IED--------------  139 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~------~t-----------------------~~~--------------  139 (286)
                      ..++|+++|.+|||||||+++|.+..+.+...      ++                       +.+              
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            34799999999999999999999977642221      11                       000              


Q ss_pred             ---------eEEEEEEECCeEEEEEEEeCCCcc-------------cchhhhhhcccCcc-EEEEEEECCCcccHHHHHH
Q psy10504        140 ---------FYRKEIEVDKAPCVLEILDTAGTE-------------QFASMRDLYIKNGQ-GFVVVYSLTNHHTFQDIKQ  196 (286)
Q Consensus       140 ---------~~~~~~~~~~~~~~l~l~DtpG~~-------------~~~~~~~~~~~~~d-~vilv~d~~~~~s~~~~~~  196 (286)
                               .....+...+ ...++||||||..             .+..+...|++.++ ++++|+|+++...-.+...
T Consensus       110 g~~~gi~~~~~~~~i~~~~-~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~  188 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  188 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETT-CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred             ccCCCcccCceEEEEecCC-CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence                     0000111111 2348999999963             34456666776655 5555666665332222222


Q ss_pred             HHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH--HHHhcC-CCEEEEeCCCCCcHHHHHHHHHH
Q psy10504        197 MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA--LAQSWG-CPFIEASAKNKTNVNEMFAEIVR  264 (286)
Q Consensus       197 ~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~--~~~~~~-~~~~~vSa~~~~gv~~l~~~i~~  264 (286)
                      ++   .. ....+.|+++|+||+|+.+.... .....+.  .....+ .+++++||+++.|++++++++.+
T Consensus       189 i~---~~-~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VA---KE-VDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HH---HH-HCTTCTTEEEEEECGGGSCTTCC-CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HH---HH-hCcCCCceEEEeccccccCcchh-HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            22   22 22347899999999999733221 1111110  000112 35678999999999999999987

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.56  E-value=2.3e-15  Score=126.47  Aligned_cols=154  Identities=20%  Similarity=0.139  Sum_probs=92.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCc-------cCCCcc--------ceEEEEEEEC----------------CeE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEK-------YDPTIE--------DFYRKEIEVD----------------KAP  151 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~-------~~~t~~--------~~~~~~~~~~----------------~~~  151 (286)
                      +..+|+++|++|+|||||+++|........       ...+..        ......+...                ...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            347899999999999999999987421110       011000        0000111110                112


Q ss_pred             EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHH
Q psy10504        152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL  231 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~  231 (286)
                      +.+.+|||+|+....   ..+....+.+++|+|+++....    .|.. ....    +.|+++|+||+|+.+ .......
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~----~~~~-~~~~----~~~~iiv~NK~Dl~~-~~~~~~~  175 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV----VEKH-PEIF----RVADLIVINKVALAE-AVGADVE  175 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH----HHHC-HHHH----HTCSEEEEECGGGHH-HHTCCHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh----hhhh-hhhh----hcCCEEEEecccCCc-chhhHHH
Confidence            347899999952111   1122357889999999876421    1111 1111    468999999999862 2122344


Q ss_pred             HHHHHHHhc--CCCEEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504        232 DGQALAQSW--GCPFIEASAKNKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       232 ~~~~~~~~~--~~~~~~vSa~~~~gv~~l~~~i~~~i~~~  269 (286)
                      +........  +.+++++||++|.|+++++++|.+.+...
T Consensus       176 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          176 KMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            444444443  47899999999999999999999988654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.56  E-value=2.7e-15  Score=135.70  Aligned_cols=103  Identities=22%  Similarity=0.335  Sum_probs=69.9

Q ss_pred             EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHH
Q psy10504        152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL  231 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~  231 (286)
                      +.+.||||||...   .....+..+|++++|+|.......+.+..         ...+.|+++|+||+|+... ... ..
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivVlNK~Dl~~~-~~~-~~  237 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---------GVLELADIVVVNKADGEHH-KEA-RL  237 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---------TSGGGCSEEEEECCCGGGH-HHH-HH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---------hHhhcCCEEEEECCCCcCh-hHH-HH
Confidence            3488999999543   23344588999999999877654433321         1124699999999998621 111 11


Q ss_pred             HHHHHHHh----------cCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        232 DGQALAQS----------WGCPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       232 ~~~~~~~~----------~~~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      ....+...          ++.+++++||++|.|+++++++|.+.+..
T Consensus       238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            11222221          25789999999999999999999998764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.55  E-value=6.6e-14  Score=126.18  Aligned_cols=161  Identities=16%  Similarity=0.143  Sum_probs=102.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeE---------------EEEEEEeCCCcccch--
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAP---------------CVLEILDTAGTEQFA--  166 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~DtpG~~~~~--  166 (286)
                      ++|+++|.+|+|||||+|+|.+..+ ...++.++.+.....+.+++..               ..+++|||||+.++.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            6899999999999999999998764 3445555444433445555521               358999999988754  


Q ss_pred             --hhhh---hcccCccEEEEEEECCCc----------ccHHHHHHHHHHH------------------------------
Q psy10504        167 --SMRD---LYIKNGQGFVVVYSLTNH----------HTFQDIKQMKELI------------------------------  201 (286)
Q Consensus       167 --~~~~---~~~~~~d~vilv~d~~~~----------~s~~~~~~~~~~i------------------------------  201 (286)
                        .+..   .+++.+|++++|+|+++.          ..++++..+..++                              
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~  162 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL  162 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence              2322   347899999999999862          2233322211111                              


Q ss_pred             ----------H-------------------HHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC-
Q psy10504        202 ----------T-------------------RVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN-  251 (286)
Q Consensus       202 ----------~-------------------~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~-  251 (286)
                                .                   .+.....+|+++++||.|... ............+...+.+++++||+. 
T Consensus       163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~-~~n~~~~~v~~~~~~~~~~~i~~sA~~E  241 (363)
T 1jal_A          163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF-ENNPYLDRVREIAAKEGAVVVPVCAAIE  241 (363)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS-SSCHHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred             HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc-cccHHHHHHHHHHHHcCCCEEEechHHH
Confidence                      0                   011223589999999999642 222234455666667788999999763 


Q ss_pred             ---------------------CCcHHHHHHHHHHHh
Q psy10504        252 ---------------------KTNVNEMFAEIVREM  266 (286)
Q Consensus       252 ---------------------~~gv~~l~~~i~~~i  266 (286)
                                           ..|++.+.+...+.+
T Consensus       242 ~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L  277 (363)
T 1jal_A          242 SEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALL  277 (363)
T ss_dssp             HHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHT
T ss_pred             HHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHh
Confidence                                 356777777665544

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.50  E-value=4.1e-17  Score=137.76  Aligned_cols=153  Identities=16%  Similarity=0.125  Sum_probs=89.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccc-eE------------EEEEEEC-CeE-----------------
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FY------------RKEIEVD-KAP-----------------  151 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~-~~------------~~~~~~~-~~~-----------------  151 (286)
                      +.++|+++|++|||||||+++|....+...+.+++.. +.            ...+.++ +..                 
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            3589999999999999999999986554433332221 00            0111111 100                 


Q ss_pred             --EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCC
Q psy10504        152 --CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVP  229 (286)
Q Consensus       152 --~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~  229 (286)
                        ..+.++|++|.-..   ...+-...+..+.++|+........  .. ...  .    +.|.++|+||+|+.+ .+...
T Consensus       117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~-~~~--~----~~~~iiv~NK~Dl~~-~~~~~  183 (226)
T 2hf9_A          117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KH-PGI--M----KTADLIVINKIDLAD-AVGAD  183 (226)
T ss_dssp             GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TC-HHH--H----TTCSEEEEECGGGHH-HHTCC
T ss_pred             CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hh-hhH--h----hcCCEEEEeccccCc-hhHHH
Confidence              12445566552110   0111223455667777533211110  00 011  1    468899999999862 22234


Q ss_pred             HHHHHHHHHhc--CCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        230 TLDGQALAQSW--GCPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       230 ~~~~~~~~~~~--~~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      ..+........  +.+++++||++|.|++++|++|.+.+..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          184 IKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            45555555543  5789999999999999999999988754

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.49  E-value=1.1e-14  Score=131.39  Aligned_cols=102  Identities=18%  Similarity=0.165  Sum_probs=61.9

Q ss_pred             EEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHH
Q psy10504        153 VLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLD  232 (286)
Q Consensus       153 ~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~  232 (286)
                      .+.++||||....   .......+|++++|+|++++...+.+..   .+      -..|.++|+||+|+.+.. .. ...
T Consensus       168 ~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~-~~-~~~  233 (349)
T 2www_A          168 DIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIV-PA-RRI  233 (349)
T ss_dssp             SEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHH-HH-HHH
T ss_pred             CEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCch-hH-HHH
Confidence            3789999995422   2344678999999999987643222211   11      146889999999986210 00 001


Q ss_pred             HHHHHH----------hcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        233 GQALAQ----------SWGCPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       233 ~~~~~~----------~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      ...+..          .+..+++.+||++|.|+++++++|.+.+..
T Consensus       234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            112211          124578999999999999999999987643

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.48  E-value=1.8e-13  Score=123.93  Aligned_cols=83  Identities=20%  Similarity=0.184  Sum_probs=57.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECC-------------------eEEEEEEEeCCCccc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDK-------------------APCVLEILDTAGTEQ  164 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~-------------------~~~~l~l~DtpG~~~  164 (286)
                      ++|+++|.+|+|||||++++.+... ...++.++.+.......+++                   ....+++|||||+.+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5799999999999999999998642 34444443322222333322                   224589999999876


Q ss_pred             chh----hh---hhcccCccEEEEEEECCC
Q psy10504        165 FAS----MR---DLYIKNGQGFVVVYSLTN  187 (286)
Q Consensus       165 ~~~----~~---~~~~~~~d~vilv~d~~~  187 (286)
                      +..    +.   ...++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            531    22   235789999999999986

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.47  E-value=6.1e-14  Score=133.53  Aligned_cols=116  Identities=16%  Similarity=0.196  Sum_probs=80.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCC---CccCCCccceEEEEEE---------------------------------
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFM---EKYDPTIEDFYRKEIE---------------------------------  146 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~---~~~~~t~~~~~~~~~~---------------------------------  146 (286)
                      ..++|+|+|.+|+|||||+|+|++..+.   ....+++.........                                 
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~  143 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF  143 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence            5689999999999999999999998763   2233333221111100                                 


Q ss_pred             ----ECCe-EEEEEEEeCCCccc-----------chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCC
Q psy10504        147 ----VDKA-PCVLEILDTAGTEQ-----------FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERV  210 (286)
Q Consensus       147 ----~~~~-~~~l~l~DtpG~~~-----------~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~  210 (286)
                          ..+. ...+.||||||+..           |......++..+|++++|+|+++....+....++..+..    .+.
T Consensus       144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~  219 (550)
T 2qpt_A          144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HED  219 (550)
T ss_dssp             EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGG
T ss_pred             eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCC
Confidence                0000 01488999999875           456667788999999999999886555555555555433    267


Q ss_pred             cEEEEEeCCCCC
Q psy10504        211 PILLVANKLDLA  222 (286)
Q Consensus       211 piivv~nK~Dl~  222 (286)
                      |+++|+||+|+.
T Consensus       220 pvilVlNK~Dl~  231 (550)
T 2qpt_A          220 KIRVVLNKADMV  231 (550)
T ss_dssp             GEEEEEECGGGS
T ss_pred             CEEEEEECCCcc
Confidence            999999999987

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.47  E-value=4.2e-13  Score=115.57  Aligned_cols=116  Identities=12%  Similarity=-0.013  Sum_probs=71.3

Q ss_pred             EEEEEEeCCCcccchhhhh------hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504        152 CVLEILDTAGTEQFASMRD------LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ  225 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~~------~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~  225 (286)
                      +.+.+|||||+.++.....      ..+.. +++++++|+.......+...............++|+++|+||+|+... 
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~-  186 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE-  186 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH-
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc-
Confidence            3588999999876654322      24466 899999988654443333222111111111126899999999998622 


Q ss_pred             CCC--------CHHHH-HH-----------------HHHhcC--CCEEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504        226 REV--------PTLDG-QA-----------------LAQSWG--CPFIEASAKNKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       226 ~~~--------~~~~~-~~-----------------~~~~~~--~~~~~vSa~~~~gv~~l~~~i~~~i~~~  269 (286)
                      ...        ..... ..                 +.+.++  .+++++||+++.|+++++++|.+.+...
T Consensus       187 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~  258 (262)
T 1yrb_A          187 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC  258 (262)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence            111        00000 00                 012333  5899999999999999999999887653

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.43  E-value=1.2e-13  Score=124.17  Aligned_cols=102  Identities=21%  Similarity=0.189  Sum_probs=64.1

Q ss_pred             EEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCH--
Q psy10504        153 VLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPT--  230 (286)
Q Consensus       153 ~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~--  230 (286)
                      .+.||||||...+..   .....+|++++|+|++++...+.+..   ...      +.|.++|+||+|+.+. .....  
T Consensus       150 ~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~~------~~p~ivv~NK~Dl~~~-~~~~~~~  216 (341)
T 2p67_A          150 DVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GLM------EVADLIVINKDDGDNH-TNVAIAR  216 (341)
T ss_dssp             SEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HHH------HHCSEEEECCCCTTCH-HHHHHHH
T ss_pred             CEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hhh------cccCEEEEECCCCCCh-HHHHHHH
Confidence            488999999765443   24689999999999976543222211   111      3588999999998621 11100  


Q ss_pred             HHHHHHHHhc-------CCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        231 LDGQALAQSW-------GCPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       231 ~~~~~~~~~~-------~~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      .+........       ..+++++||++|.|+++++++|.+.+.
T Consensus       217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            0111111111       356899999999999999999998765

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.42  E-value=2.4e-13  Score=132.69  Aligned_cols=161  Identities=17%  Similarity=0.193  Sum_probs=100.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccce-----------------------------------------
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDF-----------------------------------------  140 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~-----------------------------------------  140 (286)
                      ..++|+|+|.+++|||||+|+|.+..+ +.....++...                                         
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            346999999999999999999999766 22222222111                                         


Q ss_pred             ----------EEEEEEECCeEEEEEEEeCCCccc-------------chhhhhhcc-cCccEEEEEEECCCcccHHHHHH
Q psy10504        141 ----------YRKEIEVDKAPCVLEILDTAGTEQ-------------FASMRDLYI-KNGQGFVVVYSLTNHHTFQDIKQ  196 (286)
Q Consensus       141 ----------~~~~~~~~~~~~~l~l~DtpG~~~-------------~~~~~~~~~-~~~d~vilv~d~~~~~s~~~~~~  196 (286)
                                ....+...+. ..+.|+||||...             +..+...|+ ..+|++++|+|++++...++...
T Consensus       130 g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             CCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                      1111111111 1378999999543             222334444 57899999999987654444322


Q ss_pred             HHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh----cC-CCEEEEeCCCCCcHHHHHHHHHHH---hhc
Q psy10504        197 MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS----WG-CPFIEASAKNKTNVNEMFAEIVRE---MNF  268 (286)
Q Consensus       197 ~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~-~~~~~vSa~~~~gv~~l~~~i~~~---i~~  268 (286)
                      +...+.    ..+.|+++|+||+|+.+.... .. .... .+.    .+ .+++.+||++|.|++++++.+.+.   +++
T Consensus       209 ll~~L~----~~g~pvIlVlNKiDlv~~~~~-~~-~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe  281 (772)
T 3zvr_A          209 IAKEVD----PQGQRTIGVITKLDLMDEGTD-AR-DVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLS  281 (772)
T ss_dssp             HHHHHC----TTCSSEEEEEECTTSSCTTCC-SH-HHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHH
T ss_pred             HHHHHH----hcCCCEEEEEeCcccCCcchh-hH-HHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccC
Confidence            333322    237899999999999743322 11 1111 111    12 356789999999999999999873   554


Q ss_pred             CCC
Q psy10504        269 NPE  271 (286)
Q Consensus       269 ~~~  271 (286)
                      .+.
T Consensus       282 ~P~  284 (772)
T 3zvr_A          282 HPS  284 (772)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            443

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.40  E-value=5.4e-12  Score=114.27  Aligned_cols=153  Identities=14%  Similarity=0.115  Sum_probs=100.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCc-CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh----h---hhhcccC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGC-FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS----M---RDLYIKN  175 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~----~---~~~~~~~  175 (286)
                      ..+|+++|.||||||||+|+|.+.. ...+++.|+.+.....+.+++.+  ++++||||..+-..    +   ....++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~--i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK--IQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE--EEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE--EEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            4789999999999999999999854 36788899999999999999987  88999999643211    1   2234578


Q ss_pred             ccEEEEEEECCCcccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCC-------CCCCCCHHHHHHHHHhcCCCEEEE
Q psy10504        176 GQGFVVVYSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLDLAS-------HQREVPTLDGQALAQSWGCPFIEA  247 (286)
Q Consensus       176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~v  247 (286)
                      ||++++|+|+++|.  .+.......+..+. .....|.++++||.|...       ........+...+...+.+.--++
T Consensus       150 ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv  227 (376)
T 4a9a_A          150 CNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI  227 (376)
T ss_dssp             CSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred             cCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence            99999999999874  22222333333321 223578899999999742       112345555555555555332222


Q ss_pred             eCCCCCcHHHHHH
Q psy10504        248 SAKNKTNVNEMFA  260 (286)
Q Consensus       248 Sa~~~~gv~~l~~  260 (286)
                      -...+...+++.+
T Consensus       228 ~~~~nv~eddl~d  240 (376)
T 4a9a_A          228 AFRCDATVDDLID  240 (376)
T ss_dssp             EECSCCCHHHHHH
T ss_pred             eecccCCHHHHHH
Confidence            2233344444443

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.30  E-value=6.4e-13  Score=109.82  Aligned_cols=108  Identities=13%  Similarity=0.087  Sum_probs=69.3

Q ss_pred             CCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHH---h-CCCCCcEEEEEeCC-CCCCCCCCCCHHHH
Q psy10504        159 TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRV---K-GSERVPILLVANKL-DLASHQREVPTLDG  233 (286)
Q Consensus       159 tpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~---~-~~~~~piivv~nK~-Dl~~~~~~~~~~~~  233 (286)
                      .+||+.++.+|+.|++++|++|+|+|++|.+..+ .+..+..+...   . ...++|++|++||. |++.+   .+..+.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A---ms~~EI  184 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---MPCFYL  184 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB---CCHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC---CCHHHH
Confidence            3489999999999999999999999999986554 44433222221   1 12588999999995 67522   222222


Q ss_pred             HHHHH----hcCCCEEEEeCCCCCcHHHHHHHHHHHhhcCC
Q psy10504        234 QALAQ----SWGCPFIEASAKNKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       234 ~~~~~----~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~  270 (286)
                      .....    ...+.+..|||++|+|+.+.++||.+.+..+.
T Consensus       185 ~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          185 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             HHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence            22111    12356899999999999999999998886543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.27  E-value=2.3e-11  Score=107.37  Aligned_cols=120  Identities=17%  Similarity=0.127  Sum_probs=88.9

Q ss_pred             CCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEE
Q psy10504        135 PTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPIL  213 (286)
Q Consensus       135 ~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~pii  213 (286)
                      ++++|+.......++..+   +.+  .++++..+.+.+++++|++++|+|++++. +++.+..|+..+..    .++|++
T Consensus        44 ~~vGD~V~~~~~~~~~g~---I~~--i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~i  114 (302)
T 2yv5_A           44 IYAGDYVWGEVVDPNTFA---IEE--VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPV  114 (302)
T ss_dssp             CCBTCEEEEEEEETTEEE---EEE--ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEE
T ss_pred             CcCceEEEEEEccCCeEE---EEe--eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEE
Confidence            667776655544333322   222  37788888889999999999999999986 88888888886655    379999


Q ss_pred             EEEeCCCCCCCCCCCC-HHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504        214 LVANKLDLASHQREVP-TLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR  264 (286)
Q Consensus       214 vv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~  264 (286)
                      +|+||+|+.+ ...+. ..+.....+..+.+++++||++|.|++++++.+..
T Consensus       115 lV~NK~DL~~-~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          115 IVFNKIDLLN-EEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             EEECCGGGCC-HHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred             EEEEcccCCC-ccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccC
Confidence            9999999972 22111 23444555667889999999999999999987653

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.26  E-value=1.6e-11  Score=110.14  Aligned_cols=102  Identities=16%  Similarity=0.215  Sum_probs=62.6

Q ss_pred             EEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHH
Q psy10504        153 VLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLD  232 (286)
Q Consensus       153 ~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~  232 (286)
                      .+.|+||||...-.   ......+|.+++++|+..+...+.+...   +.      ..|.++++||+|+.. ........
T Consensus       149 ~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~------~~~~ivvlNK~Dl~~-~~~~s~~~  215 (337)
T 2qm8_A          149 DVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF------ELADMIAVNKADDGD-GERRASAA  215 (337)
T ss_dssp             CEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH------HHCSEEEEECCSTTC-CHHHHHHH
T ss_pred             CEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh------ccccEEEEEchhccC-chhHHHHH
Confidence            38899999975432   2335789999999998654322211111   11      235577889999752 11111111


Q ss_pred             HHHHHHh----------cCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        233 GQALAQS----------WGCPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       233 ~~~~~~~----------~~~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      .+.+...          +..+++.+||+++.|++++++.|.+...
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            2223221          2467899999999999999999988765

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.19  E-value=9.6e-12  Score=107.60  Aligned_cols=108  Identities=13%  Similarity=0.081  Sum_probs=73.2

Q ss_pred             CCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHH---HHH-HHhCCCCCcEEEEEeC-CCCCCCCCCCCHHHH
Q psy10504        159 TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKE---LIT-RVKGSERVPILLVANK-LDLASHQREVPTLDG  233 (286)
Q Consensus       159 tpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~---~i~-~~~~~~~~piivv~nK-~Dl~~~~~~~~~~~~  233 (286)
                      .+||+..+.+|+.|++++|++|+|+|++|.+.++ .+..+.   .+. ......++|++|++|| .|++.+   .+..+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---ms~~EI  269 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---MPCFYL  269 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---CCHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---CCHHHH
Confidence            4689999999999999999999999999987654 333222   222 2111248999999996 588632   222222


Q ss_pred             HHHHH----hcCCCEEEEeCCCCCcHHHHHHHHHHHhhcCC
Q psy10504        234 QALAQ----SWGCPFIEASAKNKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       234 ~~~~~----~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~  270 (286)
                      .....    ...+.+..|||++|+|+.+.++|+.+.+..+.
T Consensus       270 ~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~  310 (312)
T 3l2o_B          270 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  310 (312)
T ss_dssp             HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred             HHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence            21111    12356899999999999999999999986543

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.16  E-value=4.6e-10  Score=102.19  Aligned_cols=85  Identities=16%  Similarity=0.200  Sum_probs=63.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeE---------------EEEEEEeCCCccc-
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAP---------------CVLEILDTAGTEQ-  164 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~DtpG~~~-  164 (286)
                      ...+|+++|++|+|||||+|+|.+...  ...++.++.+.....+.+.+..               ..+.+||+||... 
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            468999999999999999999998653  4566666666667777776521               2478999999543 


Q ss_pred             ------chhhhhhcccCccEEEEEEECCC
Q psy10504        165 ------FASMRDLYIKNGQGFVVVYSLTN  187 (286)
Q Consensus       165 ------~~~~~~~~~~~~d~vilv~d~~~  187 (286)
                            +.......++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  22233445688999999999864

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.10  E-value=6.2e-11  Score=107.81  Aligned_cols=87  Identities=20%  Similarity=0.198  Sum_probs=52.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCe---------------EEEEEEEeCCCcccch
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKA---------------PCVLEILDTAGTEQFA  166 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~DtpG~~~~~  166 (286)
                      ...+|+++|.+|+|||||+|+|.+..+ ...++.++.+.....+.+++.               ...+++|||||+..+.
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            457899999999999999999998755 334455555555555655543               2248999999988655


Q ss_pred             h-------hhhhcccCccEEEEEEECCCcc
Q psy10504        167 S-------MRDLYIKNGQGFVVVYSLTNHH  189 (286)
Q Consensus       167 ~-------~~~~~~~~~d~vilv~d~~~~~  189 (286)
                      .       .+..+++.+|++++|+|+.+..
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            4       3456789999999999998643

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.75  E-value=4.5e-09  Score=98.61  Aligned_cols=148  Identities=12%  Similarity=0.157  Sum_probs=84.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHh------cCcC--CC--ccCCCc------------cceEEEE---------------E
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFV------SGCF--ME--KYDPTI------------EDFYRKE---------------I  145 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~------~~~~--~~--~~~~t~------------~~~~~~~---------------~  145 (286)
                      +...|+++|++|+||||++++|.      +...  ..  .+.+..            .+.....               +
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998      3221  00  111110            0000000               0


Q ss_pred             EECCeEEEEEEEeCCCcccchh-hhhh---c--ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcE-EEEEeC
Q psy10504        146 EVDKAPCVLEILDTAGTEQFAS-MRDL---Y--IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPI-LLVANK  218 (286)
Q Consensus       146 ~~~~~~~~l~l~DtpG~~~~~~-~~~~---~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ivv~nK  218 (286)
                      ...+  +.+.|+||||...... +...   .  +..+|.+++|+|+.......   .....+..     .+|+ ++|+||
T Consensus       180 ~~~~--~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~-----~~~i~gvVlNK  249 (504)
T 2j37_W          180 KNEN--FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD-----KVDVASVIVTK  249 (504)
T ss_dssp             HHTT--CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH-----HHCCCCEEEEC
T ss_pred             HHCC--CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh-----hcCceEEEEeC
Confidence            0023  3488999999753221 1111   1  22789999999998764321   12222222     2575 899999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHhcCCCE------------------EEEeCCCCCc-HHHHHHHHHHH
Q psy10504        219 LDLASHQREVPTLDGQALAQSWGCPF------------------IEASAKNKTN-VNEMFAEIVRE  265 (286)
Q Consensus       219 ~Dl~~~~~~~~~~~~~~~~~~~~~~~------------------~~vSa~~~~g-v~~l~~~i~~~  265 (286)
                      +|......     .........+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       250 ~D~~~~~g-----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          250 LDGHAKGG-----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             TTSCCCCT-----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             CccccchH-----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            99862211     1122333444443                  3468999999 99999999876

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.73  E-value=1.8e-08  Score=91.24  Aligned_cols=97  Identities=19%  Similarity=0.130  Sum_probs=73.3

Q ss_pred             CcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH----HHH
Q psy10504        161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG----QAL  236 (286)
Q Consensus       161 G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~----~~~  236 (286)
                      ..++|..+...+++.++++++|+|++|+.     ..|...+.+..  .++|+++|+||+|+.+..  ......    ...
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~--~~~~~~~~~l~~~  125 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKS--VKHDKVKHWMRYS  125 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTT--SCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcc--cCHHHHHHHHHHH
Confidence            45789999999999999999999999863     44555555542  378999999999997322  222222    233


Q ss_pred             HHhcCC---CEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504        237 AQSWGC---PFIEASAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       237 ~~~~~~---~~~~vSa~~~~gv~~l~~~i~~~i  266 (286)
                      .+..+.   +++.+||++|.|++++++.|.+..
T Consensus       126 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            556676   799999999999999999998754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.68  E-value=1.7e-09  Score=97.98  Aligned_cols=140  Identities=16%  Similarity=0.146  Sum_probs=84.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC------cC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh--------
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG------CF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM--------  168 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~------~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~--------  168 (286)
                      ..+|+++|.+|+|||||+|+|.+.      .. ....++++.+..  .+.++..   +.++||||......+        
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMI--EIPLESG---ATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEE--EEECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeE--EEEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence            357999999999999999999975      22 334445544332  2333332   678999996432211        


Q ss_pred             hhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEE
Q psy10504        169 RDLYI--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIE  246 (286)
Q Consensus       169 ~~~~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  246 (286)
                      ...++  +..+.++++++.........+..    + ......+.|+++++||.|...  +.......+.+.+..+..+.+
T Consensus       237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l-~~l~~~~~~~~~v~~k~d~~~--~~~~~~~~~~~~~~~g~~l~p  309 (369)
T 3ec1_A          237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----L-DYIKGGRRSFVCYMANELTVH--RTKLEKADSLYANQLGELLSP  309 (369)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE----E-EEEESSSEEEEEEECTTSCEE--EEEGGGHHHHHHHHBTTTBCS
T ss_pred             HHHHhcccccCceEEEEcCCceEEECCEEE----E-EEccCCCceEEEEecCCcccc--cccHHHHHHHHHHhcCCccCC
Confidence            11122  56789999998843211111111    0 001123689999999999862  222244456677778877666


Q ss_pred             EeCCCCCcH
Q psy10504        247 ASAKNKTNV  255 (286)
Q Consensus       247 vSa~~~~gv  255 (286)
                      .++.+.+++
T Consensus       310 ~~~~~~~~~  318 (369)
T 3ec1_A          310 PSKRYAAEF  318 (369)
T ss_dssp             SCGGGTTTC
T ss_pred             CCchhhhhc
Confidence            666655544

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.66  E-value=4e-07  Score=83.34  Aligned_cols=159  Identities=14%  Similarity=0.143  Sum_probs=86.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc--c--eEEEEEEECCeEEEEEEEeCCCcccchh-----hhhhccc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE--D--FYRKEIEVDKAPCVLEILDTAGTEQFAS-----MRDLYIK  174 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~--~--~~~~~~~~~~~~~~l~l~DtpG~~~~~~-----~~~~~~~  174 (286)
                      ...++|+|++|+|||||+|.+.+-.....-.-+..  +  ......+.. ....++++|++|......     +....+.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            45899999999999999999998322211100000  0  001122221 111378999998532111     1122234


Q ss_pred             CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC--C----CCCCCCHHH----HHHHH----Hhc
Q psy10504        175 NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA--S----HQREVPTLD----GQALA----QSW  240 (286)
Q Consensus       175 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~--~----~~~~~~~~~----~~~~~----~~~  240 (286)
                      ..+..++ ++...+ .-+.+ .+...+..    .++|+++|.||.|+.  +    .-......+    ...+.    ...
T Consensus       148 ~~~~~~~-lS~G~~-~kqrv-~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~  220 (413)
T 1tq4_A          148 EYDFFII-ISATRF-KKNDI-DIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  220 (413)
T ss_dssp             GCSEEEE-EESSCC-CHHHH-HHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCeEE-eCCCCc-cHHHH-HHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            4455554 666532 12222 22333333    268999999999963  0    111111222    22222    122


Q ss_pred             C---CCEEEEeC--CCCCcHHHHHHHHHHHhhcCC
Q psy10504        241 G---CPFIEASA--KNKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       241 ~---~~~~~vSa--~~~~gv~~l~~~i~~~i~~~~  270 (286)
                      +   ..++.+|+  .++.|++++.+.|.+.+++.+
T Consensus       221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence            2   46788999  566779999999999987755

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.65  E-value=1.6e-08  Score=92.69  Aligned_cols=139  Identities=15%  Similarity=0.154  Sum_probs=69.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCcc-----CCCccceEEEEEEECCeEEEEEEEeCCCcccc-------hh----
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKY-----DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF-------AS----  167 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~-------~~----  167 (286)
                      .++++|+|++|+|||||++.+.+..+....     +..............+....++++|++|....       ..    
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            367999999999999999999986432211     11111222233333333346899999985321       10    


Q ss_pred             -------hhhhc---------ccCcc---EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC
Q psy10504        168 -------MRDLY---------IKNGQ---GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREV  228 (286)
Q Consensus       168 -------~~~~~---------~~~~d---~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~  228 (286)
                             ....+         ..+++   +++++.|...+-+..++     .+.+.-. .++|+|+|+||+|... ..+.
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-----eilk~L~-~~~~vI~Vi~KtD~Lt-~~E~  194 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-----VTMKKLD-SKVNIIPIIAKADAIS-KSEL  194 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-----HHHHHTC-SCSEEEEEESCGGGSC-HHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-----HHHHHHh-hCCCEEEEEcchhccc-hHHH
Confidence                   01111         12232   35666666654433332     2222222 4889999999999862 1111


Q ss_pred             CHHHHHHH---HHhcCCCEEEEeCC
Q psy10504        229 PTLDGQAL---AQSWGCPFIEASAK  250 (286)
Q Consensus       229 ~~~~~~~~---~~~~~~~~~~vSa~  250 (286)
                      . .....+   ....|++++.+|.-
T Consensus       195 ~-~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          195 T-KFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             H-HHHHHHHHHHBTTBCCCCCCC--
T ss_pred             H-HHHHHHHHHHHHcCCcEEecCCC
Confidence            1 111112   22345777777753

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.62  E-value=3.4e-08  Score=86.14  Aligned_cols=101  Identities=13%  Similarity=0.039  Sum_probs=69.6

Q ss_pred             EEeCCCcc-cchhhhhhcccCccEEEEEEECCCcccHHH--HHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHH
Q psy10504        156 ILDTAGTE-QFASMRDLYIKNGQGFVVVYSLTNHHTFQD--IKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLD  232 (286)
Q Consensus       156 l~DtpG~~-~~~~~~~~~~~~~d~vilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~  232 (286)
                      +-+.|||. +........+..+|+++.|+|++++.+..+  +..++         .++|.++|+||+|+.+  .. ..+.
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL~~--~~-~~~~   70 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADKAD--AA-VTQQ   70 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGGSC--HH-HHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECcccCC--HH-HHHH
Confidence            45689986 344556677899999999999999877653  33222         3789999999999973  11 1122


Q ss_pred             HHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        233 GQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       233 ~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      ...+.+..+.+++.+||+++.|++++++.+.+.+.+
T Consensus        71 ~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           71 WKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence            233344557899999999999999999988887653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.60  E-value=5.6e-08  Score=88.02  Aligned_cols=98  Identities=21%  Similarity=0.214  Sum_probs=71.8

Q ss_pred             CcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH----HHH
Q psy10504        161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG----QAL  236 (286)
Q Consensus       161 G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~----~~~  236 (286)
                      .+++|.++...+++.++++++|+|++|+.+     .|...+.+..  .++|+++|+||+|+.+..  ......    ...
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~~--~~~~~~~~~l~~~  127 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPRS--VKYPKLLRWMRRM  127 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCTT--CCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCCc--cCHHHHHHHHHHH
Confidence            478899999999999999999999999763     3333444332  378999999999997322  222222    223


Q ss_pred             HHhcCC---CEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        237 AQSWGC---PFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       237 ~~~~~~---~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      .+..+.   +++.+||++|.|++++++.+.+...
T Consensus       128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            455665   6899999999999999999987653

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.56  E-value=2.7e-09  Score=96.63  Aligned_cols=134  Identities=16%  Similarity=0.169  Sum_probs=76.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCc------C--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhh-------
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGC------F--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMR-------  169 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~------~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~-------  169 (286)
                      .+|+++|.+|+|||||+|+|.+..      .  ....++|+.+..  .+.+++.   +.++||||......+.       
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLI--DIPLDEE---SSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEE--EEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceE--EEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence            579999999999999999998852      1  223344443322  2333333   6799999964332111       


Q ss_pred             -hhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEE
Q psy10504        170 -DLY--IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIE  246 (286)
Q Consensus       170 -~~~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  246 (286)
                       ..+  ....+.++++++.........+..    + ......+.|+++++||.|...  +.......+.+.+..+..+.+
T Consensus       236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~-d~l~~~~~~~~~v~nk~d~~~--~~~~~~~~~~~~~~~g~~l~p  308 (368)
T 3h2y_A          236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR----F-DYVSGGRRAFTCHFSNRLTIH--RTKLEKADELYKNHAGDLLSP  308 (368)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE----E-EEEESSSEEEEEEECTTSCEE--EEEHHHHHHHHHHHBTTTBCS
T ss_pred             HHHhccccccCceEEEEcCCCEEEEcceEE----E-EEecCCCceEEEEecCccccc--cccHHHHHHHHHHHhCCccCC
Confidence             111  356788889988743211111110    0 001123689999999999862  222344455666777766555


Q ss_pred             EeCC
Q psy10504        247 ASAK  250 (286)
Q Consensus       247 vSa~  250 (286)
                      .++.
T Consensus       309 ~~~~  312 (368)
T 3h2y_A          309 PTPE  312 (368)
T ss_dssp             SCHH
T ss_pred             Cchh
Confidence            5543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.51  E-value=3.7e-07  Score=79.02  Aligned_cols=113  Identities=22%  Similarity=0.265  Sum_probs=61.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCc---------cCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccc-------h
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEK---------YDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQF-------A  166 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~---------~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~-------~  166 (286)
                      .++++++|+.|+|||||++.+.+......         ...+.. .......+..+....++++|++|-...       .
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            47899999999999999999997322111         111111 111222222222235899999983211       0


Q ss_pred             hhh---------------------hhcccCccEEEEEEECC-CcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        167 SMR---------------------DLYIKNGQGFVVVYSLT-NHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       167 ~~~---------------------~~~~~~~d~vilv~d~~-~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      .+.                     +..+..+++.++++|-. .+-...+ ...+..+..     .+++++|++|+|..
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~-----~~~vI~Vi~K~D~l  153 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK-----VVNIIPVIAKADTM  153 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT-----TSEEEEEETTGGGS
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh-----cCcEEEEEeccccC
Confidence            000                     01123367888888854 3333222 222223322     38999999999986

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.28  E-value=2.2e-06  Score=78.89  Aligned_cols=92  Identities=14%  Similarity=0.114  Sum_probs=54.8

Q ss_pred             EEEEEEeCCCcccchh-----hhh-hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504        152 CVLEILDTAGTEQFAS-----MRD-LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ  225 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~-----~~~-~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~  225 (286)
                      +.+.++||||......     +.. .....+|.+++|+|+..+...   ......+...    -.+..+|+||.|...  
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~----~~i~gVIlTKlD~~~--  253 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA----TPIGSIIVTKLDGSA--  253 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS----CTTEEEEEECCSSCS--
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh----CCCeEEEEECCCCcc--
Confidence            4488999999443221     111 112357899999999875432   2222333321    235578999999861  


Q ss_pred             CCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        226 REVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                         ............+.|+.+++.  |+++++
T Consensus       254 ---~gG~~ls~~~~~g~PI~fig~--Ge~vdd  280 (443)
T 3dm5_A          254 ---KGGGALSAVAATGAPIKFIGT--GEKIDD  280 (443)
T ss_dssp             ---SHHHHHHHHHTTCCCEEEEEC--SSSTTC
T ss_pred             ---cccHHHHHHHHHCCCEEEEEc--CCChHH
Confidence               122344555678899988885  666544

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.24  E-value=2.9e-07  Score=84.94  Aligned_cols=83  Identities=19%  Similarity=0.103  Sum_probs=47.8

Q ss_pred             EEEEEEeCCCcccchh-hh-----hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCC-c-EEEEEeCCCCCC
Q psy10504        152 CVLEILDTAGTEQFAS-MR-----DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERV-P-ILLVANKLDLAS  223 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~-~~-----~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p-iivv~nK~Dl~~  223 (286)
                      +.+.++||||...... +.     ...+..+|.+++|+|+..+.   +.....   ....  +.+ | ..+|+||+|.. 
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~---~~~~--~~~~~i~gvVlnK~D~~-  251 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQA---KAFK--EAVGEIGSIIVTKLDGS-  251 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHH---HHHH--TTSCSCEEEEEECSSSC-
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHH---HHHh--hcccCCeEEEEeCCCCc-
Confidence            3478999999654321 11     11223689999999987653   222222   2221  145 6 78999999975 


Q ss_pred             CCCCCCHHHHHHHHHhcCCCEEEE
Q psy10504        224 HQREVPTLDGQALAQSWGCPFIEA  247 (286)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~v  247 (286)
                      ...    .....+....+.|+..+
T Consensus       252 ~~~----g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          252 AKG----GGALSAVAETKAPIKFI  271 (432)
T ss_dssp             STT----HHHHHHHHHSSCCEEEE
T ss_pred             cch----HHHHHHHHHHCCCEEEe
Confidence            111    12334566677776555

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.15  E-value=9.1e-07  Score=76.23  Aligned_cols=93  Identities=13%  Similarity=0.046  Sum_probs=61.2

Q ss_pred             CCCcccc-hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy10504        159 TAGTEQF-ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA  237 (286)
Q Consensus       159 tpG~~~~-~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~  237 (286)
                      .|||... .......+..+|+++.|+|+++|.+.....  +. +     . ++|.++|+||+|+.+. .  .......+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~-~--~~~~~~~~~   71 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADE-K--TTKKWVEFF   71 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCH-H--HHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCH-H--HHHHHHHHH
Confidence            5787633 234566788999999999999987654321  01 1     1 6899999999999731 1  112223334


Q ss_pred             HhcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504        238 QSWGCPFIEASAKNKTNVNEMFAEIVR  264 (286)
Q Consensus       238 ~~~~~~~~~vSa~~~~gv~~l~~~i~~  264 (286)
                      +..+.++ .+||+++.|++++++.+..
T Consensus        72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           72 KKQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            4567888 9999999999999887654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.14  E-value=2.4e-06  Score=74.41  Aligned_cols=57  Identities=25%  Similarity=0.317  Sum_probs=35.6

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      ...++|+++|.+|+|||||+|++.+...  +...++++.+..  .+..+ ..  +.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~-~~--~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVG-KE--LELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEET-TT--EEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeC-CC--EEEEECcCcC
Confidence            3568999999999999999999998653  333344443332  22333 23  7899999964

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.03  E-value=1.9e-06  Score=74.18  Aligned_cols=55  Identities=18%  Similarity=0.222  Sum_probs=35.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCC--CccCCCccceEEEEEEECCeEEEEEEEeCCCccc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFM--EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ  164 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~  164 (286)
                      ++++++|.+|+|||||+|+|.+....  ...++++....  .+..+ ..  +.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~-~~--~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSLE-NG--VKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEECT-TS--CEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEeC-CC--EEEEECCCccc
Confidence            79999999999999999999986542  22223322221  22222 23  78999999764

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.97  E-value=7.6e-06  Score=78.07  Aligned_cols=60  Identities=20%  Similarity=0.113  Sum_probs=39.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEE-------ECCeEEEEEEEeCCCccc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIE-------VDKAPCVLEILDTAGTEQ  164 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~~l~l~DtpG~~~  164 (286)
                      +..+|+|+|.+|+|||||+|+|.+....-...+++.+.....+.       ..+..  +.++||||...
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~--i~LiDTpGi~~  103 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHI--LVLLDTEGLGD  103 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCE--EEEEEECCBCC
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCce--EEEecCCCcCc
Confidence            56889999999999999999999865321333333221111111       12334  88999999654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.90  E-value=1e-05  Score=74.37  Aligned_cols=90  Identities=11%  Similarity=0.056  Sum_probs=53.6

Q ss_pred             EEEEEEeCCCccc--chh-hh---hh--cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        152 CVLEILDTAGTEQ--FAS-MR---DL--YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       152 ~~l~l~DtpG~~~--~~~-~~---~~--~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                      +.+.++||||...  ... +.   ..  .....+.+++|+|+.......+   ....+...    -.+..+|+||.|.. 
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~----~~~~gVIlTKlD~~-  251 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA----SPIGSVIITKMDGT-  251 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH----CSSEEEEEECGGGC-
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc----cCCcEEEEeccccc-
Confidence            3477999999543  111 11   11  1124689999999987543322   22333331    23578899999975 


Q ss_pred             CCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcH
Q psy10504        224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNV  255 (286)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv  255 (286)
                      .    ............+.|+.+++.  |+++
T Consensus       252 a----~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          252 A----KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             S----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             c----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence            1    123345555667899988885  6665

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.90  E-value=1.6e-05  Score=69.68  Aligned_cols=92  Identities=12%  Similarity=0.104  Sum_probs=57.1

Q ss_pred             EEEEEEeCCCccc--chh-hhh-----hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCC
Q psy10504        152 CVLEILDTAGTEQ--FAS-MRD-----LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLA  222 (286)
Q Consensus       152 ~~l~l~DtpG~~~--~~~-~~~-----~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~  222 (286)
                      +.+.++||||...  ... +..     .....+|.+++|+|+...   ++.......+..     ..| ..+|+||.|..
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMDGT  252 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGGGC
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCCCC
Confidence            3488999999765  321 211     123468999999998753   222222222222     356 67889999975


Q ss_pred             CCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504        223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l  258 (286)
                      .     .......+....+.|+..++  +|++++++
T Consensus       253 ~-----~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          253 A-----KGGGALSAVAATGATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             T-----THHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             c-----chHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence            1     12344566777889998887  67776543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.82  E-value=4.9e-06  Score=73.22  Aligned_cols=91  Identities=14%  Similarity=0.159  Sum_probs=59.8

Q ss_pred             hhhhhhcccCccEEEEEEECCCcccHHH-HHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCHHHHHHHHHhcCCC
Q psy10504        166 ASMRDLYIKNGQGFVVVYSLTNHHTFQD-IKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPTLDGQALAQSWGCP  243 (286)
Q Consensus       166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~  243 (286)
                      ..+.+..+.++|.+++|+|+.+|..-.+ +..++....    ..++|.++|+||+|+.+.... ..........+..|.+
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~  152 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD  152 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe
Confidence            3445567899999999999998764443 232222222    238899999999999732110 0012233344456789


Q ss_pred             EEEEeCCCCCcHHHHHH
Q psy10504        244 FIEASAKNKTNVNEMFA  260 (286)
Q Consensus       244 ~~~vSa~~~~gv~~l~~  260 (286)
                      ++.+||+++.|++++++
T Consensus       153 v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          153 VYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             EEECCHHHHTTCTTTGG
T ss_pred             EEEEecCCCCCHHHHHh
Confidence            99999999999887655

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.73  E-value=7.7e-05  Score=71.72  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGC  128 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~  128 (286)
                      .++|+|+.|||||||++.+.+-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            39999999999999999999853

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.68  E-value=8.8e-05  Score=66.49  Aligned_cols=87  Identities=15%  Similarity=0.102  Sum_probs=55.2

Q ss_pred             hcccCccEEEEEEECCCcccH-HHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC
Q psy10504        171 LYIKNGQGFVVVYSLTNHHTF-QDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASA  249 (286)
Q Consensus       171 ~~~~~~d~vilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa  249 (286)
                      ....++|.+++|.+. +|... ..+..++.....    .++|.++|+||+|+.+.................|.+++.+||
T Consensus       126 ~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa  200 (358)
T 2rcn_A          126 PIAANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSS  200 (358)
T ss_dssp             EEEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBT
T ss_pred             HHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEec
Confidence            356889999988665 45433 333333333222    278889999999997321100011222333457889999999


Q ss_pred             CCCCcHHHHHHHH
Q psy10504        250 KNKTNVNEMFAEI  262 (286)
Q Consensus       250 ~~~~gv~~l~~~i  262 (286)
                      +++.|++++...+
T Consensus       201 ~~~~gl~~L~~~~  213 (358)
T 2rcn_A          201 HTQDGLKPLEEAL  213 (358)
T ss_dssp             TTTBTHHHHHHHH
T ss_pred             CCCcCHHHHHHhc
Confidence            9999999987643

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.50  E-value=9.8e-05  Score=65.50  Aligned_cols=91  Identities=13%  Similarity=0.129  Sum_probs=53.2

Q ss_pred             EEEEeCCCcccchhh-hhh-----cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC
Q psy10504        154 LEILDTAGTEQFASM-RDL-----YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE  227 (286)
Q Consensus       154 l~l~DtpG~~~~~~~-~~~-----~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~  227 (286)
                      +.++||+|....... ...     ..-..|-.+++.|+....   ++......+....   + ..++++||.|.. . + 
T Consensus       214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~-it~iilTKlD~~-a-~-  283 (328)
T 3e70_C          214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---K-IDGIILTKLDAD-A-R-  283 (328)
T ss_dssp             EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---C-CCEEEEECGGGC-S-C-
T ss_pred             hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---C-CCEEEEeCcCCc-c-c-
Confidence            567999996432221 111     112368889999976543   3333333443311   2 337788999964 1 1 


Q ss_pred             CCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504        228 VPTLDGQALAQSWGCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l  258 (286)
                        .-.........+.|+..++  +|++++++
T Consensus       284 --~G~~l~~~~~~~~pi~~i~--~Ge~v~dl  310 (328)
T 3e70_C          284 --GGAALSISYVIDAPILFVG--VGQGYDDL  310 (328)
T ss_dssp             --CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred             --hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence              2234566677889998888  77776543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.40  E-value=1e-05  Score=75.41  Aligned_cols=109  Identities=17%  Similarity=0.137  Sum_probs=62.9

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEE--EEEEECCeEEEEEEEeCCCccc--chhhh--------
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYR--KEIEVDKAPCVLEILDTAGTEQ--FASMR--------  169 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~l~DtpG~~~--~~~~~--------  169 (286)
                      ....+|+++|.+|+||||+.++|........ .++.. +..  ......+......+||..|.+.  ....+        
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~-~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~  114 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTRE-FNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV  114 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEE-EEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceE-EecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            3567899999999999999999976422110 01100 000  0000011111245799999732  23333        


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEe
Q psy10504        170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVAN  217 (286)
Q Consensus       170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~n  217 (286)
                      ..++..+++.++|+|+++. +.+....|...+...    +.+++.+-.
T Consensus       115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~----~~~vv~l~~  157 (469)
T 1bif_A          115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN----GYKTFFVES  157 (469)
T ss_dssp             HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH----TCEEEEEEE
T ss_pred             HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc----CCcEEEEEE
Confidence            4566678899999999987 566666666665553    345554443

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.07  E-value=0.00063  Score=62.72  Aligned_cols=24  Identities=29%  Similarity=0.188  Sum_probs=21.5

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +-.-|+|+|.+++|||+|+|+|++
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhh
Confidence            456789999999999999999985

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.02  E-value=0.0019  Score=59.36  Aligned_cols=83  Identities=17%  Similarity=0.114  Sum_probs=46.5

Q ss_pred             EEEEEEeCCCcccchh-hhh-----hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCC
Q psy10504        152 CVLEILDTAGTEQFAS-MRD-----LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASH  224 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~-~~~-----~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~  224 (286)
                      +.+.++||||...... +..     .....++.+++|+|+.....   .......+..     .++ .-+|+||.|....
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~-----~l~i~gvVlnK~D~~~~  255 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNE-----ALPLTGVVLTKVDGDAR  255 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH-----HSCCCCEEEECTTSSSC
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhc-----cCCCeEEEEecCCCCcc
Confidence            3488999999654321 211     12346889999999975432   2222222222     344 3478999997521


Q ss_pred             CCCCCHHHHHHHHHhcCCCEEEE
Q psy10504        225 QREVPTLDGQALAQSWGCPFIEA  247 (286)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~v  247 (286)
                      .     .....+....+.|+..+
T Consensus       256 ~-----g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          256 G-----GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             C-----THHHHHHHHHCCCEEEE
T ss_pred             H-----HHHHHHHHHHCCCeEEE
Confidence            1     12334555567665544

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.43  E-value=0.0012  Score=57.87  Aligned_cols=23  Identities=35%  Similarity=0.426  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -.++++|++|+|||||+|.+.+.
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CEEEEECCCCCCHHHHHHHhccc
Confidence            47899999999999999999874

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.41  E-value=0.0017  Score=52.17  Aligned_cols=22  Identities=36%  Similarity=0.693  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +++++|++|+|||||++.+.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998874

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.34  E-value=0.0041  Score=56.97  Aligned_cols=84  Identities=21%  Similarity=0.169  Sum_probs=47.8

Q ss_pred             EEEEEEeCCCcccchh-hhh-----hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCC
Q psy10504        152 CVLEILDTAGTEQFAS-MRD-----LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASH  224 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~-~~~-----~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~  224 (286)
                      +.+.++||||...... +..     ...-.++.+++|+|+...   ++.......+..     ..+ .-+|+||.|... 
T Consensus       181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~-----~l~i~GVIlTKlD~~~-  251 (425)
T 2ffh_A          181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDE-----KVGVTGLVLTKLDGDA-  251 (425)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHH-----HTCCCEEEEESGGGCS-
T ss_pred             CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHh-----cCCceEEEEeCcCCcc-
Confidence            3478999999653321 111     112257889999998643   222222223322     223 467889999641 


Q ss_pred             CCCCCHHHHHHHHHhcCCCEEEEe
Q psy10504        225 QREVPTLDGQALAQSWGCPFIEAS  248 (286)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~vS  248 (286)
                       +   ...........+.|+.++.
T Consensus       252 -~---~g~alsi~~~~g~PI~flg  271 (425)
T 2ffh_A          252 -R---GGAALSARHVTGKPIYFAG  271 (425)
T ss_dssp             -S---CHHHHHHHHHHCCCEEEEE
T ss_pred             -c---HHHHHHHHHHHCCCEEEEe
Confidence             1   1234445667788887776

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.29  E-value=0.0023  Score=51.27  Aligned_cols=23  Identities=26%  Similarity=0.560  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -.++|+|++|||||||++.+.+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999863

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.29  E-value=0.0077  Score=52.53  Aligned_cols=22  Identities=32%  Similarity=0.641  Sum_probs=20.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHh
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFV  125 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~  125 (286)
                      .-.++++|++|+|||||+|.+.
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3468999999999999999998

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.20  E-value=0.0023  Score=52.14  Aligned_cols=22  Identities=36%  Similarity=0.519  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -.++|+|++|+|||||++.+.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999999976

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.18  E-value=0.0029  Score=51.75  Aligned_cols=28  Identities=25%  Similarity=0.503  Sum_probs=22.7

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ++++.--|+|+|++|+|||||+++|...
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            3445567899999999999999999863

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.08  E-value=0.0029  Score=51.29  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      --++++|++|||||||++.+.+.
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            35899999999999999999874

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.00  E-value=0.0037  Score=51.21  Aligned_cols=25  Identities=28%  Similarity=0.388  Sum_probs=21.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +...|+|+|++|+|||||++.+.+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999988763

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.95  E-value=0.0035  Score=51.32  Aligned_cols=23  Identities=30%  Similarity=0.322  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      --++|+|+.|||||||++.+.+-
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35889999999999999999874

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.91  E-value=0.0037  Score=49.65  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=18.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      --++++|++|||||||++.+..
T Consensus        10 ei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHcc
Confidence            4588999999999999997543

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.90  E-value=0.0048  Score=49.41  Aligned_cols=24  Identities=21%  Similarity=0.282  Sum_probs=21.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .-.++++|++|+||||+++.+.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            346899999999999999999875

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.88  E-value=0.004  Score=51.76  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=21.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .--++|+|++|||||||++.+.+.
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcc
Confidence            346889999999999999999874

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.86  E-value=0.004  Score=51.53  Aligned_cols=23  Identities=30%  Similarity=0.676  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -.++|+|++|+|||||++.+.+.
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999999873

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.75  E-value=0.0048  Score=50.55  Aligned_cols=24  Identities=25%  Similarity=0.465  Sum_probs=21.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .--|+|+|++||||||+++.|...
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            346899999999999999999874

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.71  E-value=0.0053  Score=48.31  Aligned_cols=24  Identities=33%  Similarity=0.481  Sum_probs=21.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGC  128 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~  128 (286)
                      -.++++|+.|+|||||++.+.+..
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998754

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.68  E-value=0.0059  Score=49.41  Aligned_cols=21  Identities=33%  Similarity=0.619  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~  127 (286)
                      |+|+|++|||||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999763

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.66  E-value=0.0056  Score=51.42  Aligned_cols=23  Identities=26%  Similarity=0.255  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++++|+.|||||||++.+.+-
T Consensus        32 e~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           32 EFVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Confidence            35899999999999999998764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.65  E-value=0.0063  Score=49.28  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=21.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGC  128 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~  128 (286)
                      ...|+|+|++||||||+++.|.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3468999999999999999998753

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=95.62  E-value=0.006  Score=47.98  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..|+++|++||||||+.+.|.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999876

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.62  E-value=0.0064  Score=49.62  Aligned_cols=24  Identities=21%  Similarity=0.436  Sum_probs=21.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +...|+|+|+.|||||||++.+.+
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998876

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.62  E-value=0.0088  Score=47.20  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=20.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ....|+++|++|+||||+.+.+.+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            345799999999999999998865

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.56  E-value=0.0087  Score=48.46  Aligned_cols=27  Identities=26%  Similarity=0.459  Sum_probs=22.5

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .+.....|+|.|.+|+||||+.+.|..
T Consensus        16 ~~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           16 PRGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            344556899999999999999998865

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.51  E-value=0.0063  Score=50.69  Aligned_cols=22  Identities=32%  Similarity=0.353  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|+.|+|||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999998764

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.51  E-value=0.0074  Score=50.88  Aligned_cols=22  Identities=32%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|+.|+|||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999874

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.50  E-value=0.0077  Score=53.84  Aligned_cols=24  Identities=29%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGC  128 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~  128 (286)
                      -.++++|++|+|||||+|.|.+..
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CEEEEECCCCccHHHHHHHHhccc
Confidence            468999999999999999999854

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.49  E-value=0.0069  Score=48.52  Aligned_cols=21  Identities=29%  Similarity=0.525  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .++++|++|+||||+++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.49  E-value=0.0078  Score=47.00  Aligned_cols=20  Identities=25%  Similarity=0.405  Sum_probs=18.4

Q ss_pred             EEEEEECCCCCcHHHHHHHH
Q psy10504        105 FKVVVLGSGGVGKSALTVQF  124 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l  124 (286)
                      .-|++.|.+||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            35899999999999999999

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.47  E-value=0.0084  Score=50.36  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=20.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHh
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFV  125 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~  125 (286)
                      ...|+|+|++||||||+++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999998

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.46  E-value=0.0072  Score=49.23  Aligned_cols=23  Identities=39%  Similarity=0.543  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .-|+|+|++||||||+.+.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999999763

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.44  E-value=0.0086  Score=47.72  Aligned_cols=23  Identities=30%  Similarity=0.345  Sum_probs=20.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ...|+|.|.+||||||+.+.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.43  E-value=0.0074  Score=47.24  Aligned_cols=21  Identities=14%  Similarity=0.226  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .|+|.|.+||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=95.40  E-value=0.0078  Score=48.86  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=20.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ...|+|+|++|+||||+++.+.+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998865

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.40  E-value=0.0078  Score=51.40  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|+.|+|||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999874

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.39  E-value=0.0082  Score=49.69  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|+.|+|||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999874

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.38  E-value=0.011  Score=46.68  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4589999999999999999986

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.38  E-value=0.0087  Score=50.27  Aligned_cols=23  Identities=35%  Similarity=0.481  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++++|+.|+|||||++.+.+-
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999874

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.37  E-value=0.011  Score=47.27  Aligned_cols=24  Identities=33%  Similarity=0.562  Sum_probs=20.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +...|++.|.+||||||+.+.|..
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999988864

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.36  E-value=0.0081  Score=51.70  Aligned_cols=22  Identities=41%  Similarity=0.564  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++|+|+.|+|||||++.+.+-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.35  E-value=0.0092  Score=50.30  Aligned_cols=23  Identities=22%  Similarity=0.193  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++++|+.|+|||||++.+.+-
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999874

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.33  E-value=0.012  Score=47.75  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=21.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +...|+|.|.+||||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999999875

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.32  E-value=0.0085  Score=50.98  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++++|+.|+|||||++.+.+-
T Consensus        34 e~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35889999999999999999874

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.32  E-value=0.012  Score=46.75  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=20.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +...|+++|.+||||||+.+.|..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.32  E-value=0.0077  Score=48.80  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|+.|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4889999999999999998873

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.31  E-value=0.0087  Score=51.23  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++++|+.|+|||||++.+.+-
T Consensus        38 e~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Confidence            35889999999999999999874

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.31  E-value=0.0094  Score=50.41  Aligned_cols=23  Identities=30%  Similarity=0.312  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999998774

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.29  E-value=0.0099  Score=49.65  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++++|+.|+|||||++.+.+-
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999874

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.28  E-value=0.0093  Score=52.70  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -.++++|++|+|||||++.+.+-
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999874

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.28  E-value=0.016  Score=46.87  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=20.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +...|+|.|.+||||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999988864

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.26  E-value=0.011  Score=46.76  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .-|++.|.+||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999876

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.24  E-value=0.0093  Score=50.18  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|+.|+|||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999874

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.24  E-value=0.0094  Score=50.95  Aligned_cols=22  Identities=36%  Similarity=0.403  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|+.|+|||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            5889999999999999998874

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.21  E-value=0.01  Score=50.26  Aligned_cols=22  Identities=27%  Similarity=0.450  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999874

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.20  E-value=0.0099  Score=50.60  Aligned_cols=23  Identities=17%  Similarity=0.176  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999874

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.18  E-value=0.011  Score=50.44  Aligned_cols=23  Identities=22%  Similarity=0.301  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc
Confidence            36899999999999999999874

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.16  E-value=0.01  Score=50.25  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|+.|+|||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5899999999999999998774

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=95.16  E-value=0.0085  Score=47.61  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -.++++|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.14  E-value=0.011  Score=50.57  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++|+|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999874

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.13  E-value=0.011  Score=51.76  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .=.++|+|++|+|||||++.+.+
T Consensus       126 Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          126 KNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhh
Confidence            34799999999999999999875

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.12  E-value=0.01  Score=50.69  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=20.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .-.++|+|+.|+|||||++.+.+
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHHH
Confidence            34689999999999999999876

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.12  E-value=0.012  Score=50.82  Aligned_cols=23  Identities=26%  Similarity=0.291  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        48 e~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            36899999999999999999874

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.11  E-value=0.013  Score=51.34  Aligned_cols=24  Identities=33%  Similarity=0.332  Sum_probs=21.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ...-|+|+|++|||||||++.+.+
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHh
Confidence            557899999999999999998876

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.10  E-value=0.011  Score=47.19  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ..++++|++|+|||||++++...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46889999999999999999864

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.10  E-value=0.014  Score=46.74  Aligned_cols=25  Identities=16%  Similarity=0.505  Sum_probs=21.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +...|+++|.+|+||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4467999999999999999988653

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.10  E-value=0.011  Score=47.95  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..|+|.|.+||||||+.+.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=95.09  E-value=0.014  Score=47.32  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +.|+++|.+||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.08  E-value=0.012  Score=48.19  Aligned_cols=21  Identities=29%  Similarity=0.578  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998854

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=95.08  E-value=0.012  Score=47.60  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -.|+++|.+||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998874

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.08  E-value=0.012  Score=50.49  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999874

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.07  E-value=0.014  Score=47.24  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=21.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +...|+++|++|+||||+.+.+.+.
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999988763

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.05  E-value=0.011  Score=51.59  Aligned_cols=23  Identities=35%  Similarity=0.408  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -.++++|++|+|||||++.+.+.
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTT
T ss_pred             CeEEEECCCCCcHHHHHHHhccc
Confidence            46899999999999999999874

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.05  E-value=0.0076  Score=50.07  Aligned_cols=23  Identities=17%  Similarity=0.395  Sum_probs=15.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHh-cC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFV-SG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~-~~  127 (286)
                      --++|+|++|||||||++.|. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            468999999999999999998 53

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.05  E-value=0.012  Score=48.32  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..|+|+|++|+||||+.+.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=95.04  E-value=0.011  Score=47.91  Aligned_cols=21  Identities=29%  Similarity=0.482  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +|+|+|.+||||||+.+.|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            699999999999999999876

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.03  E-value=0.013  Score=47.99  Aligned_cols=21  Identities=29%  Similarity=0.517  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +|+|+|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998854

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.03  E-value=0.015  Score=46.47  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=20.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ...|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998865

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.02  E-value=0.012  Score=50.01  Aligned_cols=22  Identities=36%  Similarity=0.478  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|+.|+|||||++.+.+-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999874

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.02  E-value=0.012  Score=50.39  Aligned_cols=22  Identities=32%  Similarity=0.351  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|+.|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6889999999999999998874

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.01  E-value=0.0089  Score=49.23  Aligned_cols=22  Identities=32%  Similarity=0.382  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|+.|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999874

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.01  E-value=0.017  Score=46.90  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=21.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +...|+|+|.+|+||||+.+.|.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999999874

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.00  E-value=0.013  Score=47.09  Aligned_cols=21  Identities=29%  Similarity=0.664  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999998876

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=94.99  E-value=0.015  Score=48.85  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=21.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +...|+|+|+.|||||||++.+.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998876

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=94.95  E-value=0.015  Score=46.30  Aligned_cols=21  Identities=33%  Similarity=0.419  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .|+|.|.+||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.94  E-value=0.011  Score=48.53  Aligned_cols=23  Identities=26%  Similarity=0.257  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      --++|+|++|+|||||++.+.+.
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999999874

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.93  E-value=0.0076  Score=48.05  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++|+|++|+|||||++.+.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998873

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=94.92  E-value=0.02  Score=45.63  Aligned_cols=24  Identities=21%  Similarity=0.423  Sum_probs=21.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +...|+++|.+|+||||+.+.+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            456799999999999999998865

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.91  E-value=0.015  Score=49.74  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGC  128 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~  128 (286)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998753

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=94.89  E-value=0.016  Score=46.69  Aligned_cols=26  Identities=23%  Similarity=0.252  Sum_probs=22.4

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .+...|+|.|.+||||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            35578999999999999999998764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.84  E-value=0.059  Score=41.16  Aligned_cols=23  Identities=17%  Similarity=0.174  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ..|++.|++|+|||++.+.+...
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHh
Confidence            34899999999999999998764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=94.83  E-value=0.017  Score=48.02  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=21.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +...|+|+|.+|+||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999988865

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.81  E-value=0.02  Score=48.12  Aligned_cols=24  Identities=21%  Similarity=0.427  Sum_probs=21.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +...|+|.|.+||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998864

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.81  E-value=0.012  Score=51.41  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=20.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .=.++|+|+.|+|||||++.+.+-
T Consensus        80 Ge~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           80 GQTLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred             CCEEEEECCCCchHHHHHHHHHcC
Confidence            347899999999999999988763

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.81  E-value=0.014  Score=52.09  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=21.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .-+++|+|++|+|||||++.+.+-
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999999874

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=94.74  E-value=0.018  Score=46.48  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=21.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ...|+|.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999999864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=94.74  E-value=0.018  Score=47.29  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=20.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ...|+|+|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999988865

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=94.73  E-value=0.02  Score=49.59  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=20.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +...|+|.|++|+|||||++.+..
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999887764

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=94.68  E-value=0.012  Score=46.72  Aligned_cols=24  Identities=25%  Similarity=0.271  Sum_probs=16.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +...|++.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999864

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=94.67  E-value=0.019  Score=45.64  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..|+++|.+||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=94.66  E-value=0.02  Score=46.44  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=21.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +...|+++|.+|+||||+++.+.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999998865

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=94.64  E-value=0.022  Score=50.16  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=21.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..+-|+|+|++|||||||++.+..
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988864

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=94.60  E-value=0.02  Score=45.35  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ...|++.|.+|+||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45689999999999999998874

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.59  E-value=0.025  Score=45.86  Aligned_cols=24  Identities=25%  Similarity=0.231  Sum_probs=21.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999999875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.54  E-value=0.018  Score=49.94  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++++|+.|+|||||++.+.+-
T Consensus        65 e~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           65 QLLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Confidence            36899999999999999998874

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=94.53  E-value=0.02  Score=45.75  Aligned_cols=23  Identities=26%  Similarity=0.393  Sum_probs=20.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ...|++.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.52  E-value=0.017  Score=51.58  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -++++|+.|+|||||++.+.+-
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            5789999999999999999874

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=94.51  E-value=0.019  Score=47.03  Aligned_cols=21  Identities=19%  Similarity=0.416  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=94.51  E-value=0.021  Score=46.87  Aligned_cols=21  Identities=29%  Similarity=0.495  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .|+++|+|||||+|...+|..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999888875

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=94.51  E-value=0.022  Score=49.70  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=21.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +...|+|+|++|+|||||++.+.+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998876

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=94.48  E-value=0.02  Score=47.35  Aligned_cols=23  Identities=22%  Similarity=0.582  Sum_probs=20.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ...|+|.|.+||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=94.47  E-value=0.02  Score=51.12  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -++++|+.|+|||||++.+.+-
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999999874

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.45  E-value=0.023  Score=44.33  Aligned_cols=21  Identities=19%  Similarity=0.289  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=94.44  E-value=0.013  Score=45.54  Aligned_cols=24  Identities=33%  Similarity=0.418  Sum_probs=21.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .-.++++|++|+|||+|++.+.+.
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999999874

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=94.44  E-value=0.027  Score=46.68  Aligned_cols=24  Identities=33%  Similarity=0.515  Sum_probs=19.3

Q ss_pred             ceEE-EEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFK-VVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~k-V~ivG~~~~GKTSLi~~l~~  126 (286)
                      +..| |+|+|+|||||+|....|..
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3444 56799999999999888875

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=94.44  E-value=0.019  Score=49.21  Aligned_cols=20  Identities=30%  Similarity=0.529  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10504        107 VVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~  126 (286)
                      ++++|++|+|||||++.+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            99999999999999999986

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.43  E-value=0.021  Score=51.13  Aligned_cols=23  Identities=30%  Similarity=0.218  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =-++|+|+.|+|||||++.+.+-
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEEcCCCchHHHHHHHHhcC
Confidence            35789999999999999999874

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.42  E-value=0.021  Score=51.10  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            5789999999999999999874

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=94.40  E-value=0.025  Score=48.82  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=20.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +..-|++.|++||||||+.++|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999964

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=94.40  E-value=0.027  Score=44.61  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=20.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +...|+++|.+|+||||+.+.|..
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999998876

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.40  E-value=0.021  Score=51.05  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            5789999999999999999874

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=94.37  E-value=0.023  Score=46.15  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999875

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=94.36  E-value=0.021  Score=45.04  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +|+|+|.+|+||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999988865

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=94.35  E-value=0.021  Score=47.98  Aligned_cols=21  Identities=33%  Similarity=0.586  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ++++|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999999864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=94.35  E-value=0.02  Score=51.14  Aligned_cols=21  Identities=33%  Similarity=0.485  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .++|+|++|+|||||++.+.+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            799999999999999999876

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=94.33  E-value=0.025  Score=45.00  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..++++|.+|+|||||+.++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999876

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.31  E-value=0.023  Score=51.18  Aligned_cols=22  Identities=36%  Similarity=0.437  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -++++|+.|+|||||++.+.+-
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHcC
Confidence            5789999999999999999874

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.30  E-value=0.023  Score=51.10  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -++++|+.|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCcHHHHHHHHHHcC
Confidence            5789999999999999999874

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=94.30  E-value=0.023  Score=44.65  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ..+++.|++|+|||++++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999988764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.29  E-value=0.023  Score=51.01  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|+.|+|||||++.+.+-
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            5789999999999999999873

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=94.29  E-value=0.026  Score=46.86  Aligned_cols=26  Identities=27%  Similarity=0.416  Sum_probs=22.3

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .+..-|+|.|..||||||+++.+.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            35567999999999999999988764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=94.26  E-value=0.027  Score=47.57  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=20.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHh
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFV  125 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~  125 (286)
                      ....|+|+|++||||||+++.+.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            45689999999999999999998

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.21  E-value=0.02  Score=51.01  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -++++|+.|+|||||++.+.+-
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCccHHHHHHHHHcC
Confidence            5889999999999999999874

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=94.21  E-value=0.023  Score=49.63  Aligned_cols=90  Identities=11%  Similarity=0.048  Sum_probs=50.6

Q ss_pred             EEEEeCCCcccchh------------hhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCC
Q psy10504        154 LEILDTAGTEQFAS------------MRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL  221 (286)
Q Consensus       154 l~l~DtpG~~~~~~------------~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl  221 (286)
                      +.++||+|......            +.+......+.++++.|+.....   +......+....   ++ .++++||.|.
T Consensus       187 ~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~---~~-t~iivTh~d~  259 (304)
T 1rj9_A          187 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN---GLEQAKKFHEAV---GL-TGVIVTKLDG  259 (304)
T ss_dssp             EEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH---HHHHHHHHHHHH---CC-SEEEEECTTS
T ss_pred             EEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH---HHHHHHHHHHHc---CC-cEEEEECCcc
Confidence            56899999542211            11123345778889999876542   222233333321   22 4778899986


Q ss_pred             CCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      . . +.   -....+....+.|+..++  .|+++++
T Consensus       260 ~-a-~g---g~~l~i~~~~~~pi~~ig--~Ge~~~d  288 (304)
T 1rj9_A          260 T-A-KG---GVLIPIVRTLKVPIKFVG--VGEGPDD  288 (304)
T ss_dssp             S-C-CC---TTHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred             c-c-cc---cHHHHHHHHHCCCeEEEe--CCCChhh
Confidence            4 2 11   123455666788888886  5555443

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=94.20  E-value=0.02  Score=47.04  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..|+|+|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.18  E-value=0.011  Score=48.16  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999999875

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=94.14  E-value=0.027  Score=46.25  Aligned_cols=23  Identities=17%  Similarity=0.388  Sum_probs=20.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ...|+|+|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988865

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=94.14  E-value=0.023  Score=50.81  Aligned_cols=23  Identities=30%  Similarity=0.457  Sum_probs=21.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -.++|+|+.|+|||||++.+.+-
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            47999999999999999999874

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=94.13  E-value=0.027  Score=44.85  Aligned_cols=21  Identities=19%  Similarity=0.330  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998876

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=94.12  E-value=0.024  Score=45.38  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..|++.|.+||||||+.+.|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988865

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=94.10  E-value=0.026  Score=47.78  Aligned_cols=21  Identities=19%  Similarity=0.401  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -|+|+|++|||||||...|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998865

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=94.08  E-value=0.034  Score=45.52  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ...|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999865

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.08  E-value=0.14  Score=44.95  Aligned_cols=20  Identities=20%  Similarity=0.544  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10504        107 VVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~  126 (286)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998877

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.04  E-value=0.031  Score=46.18  Aligned_cols=21  Identities=19%  Similarity=0.430  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=94.01  E-value=0.029  Score=45.90  Aligned_cols=21  Identities=24%  Similarity=0.642  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999999885

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=94.00  E-value=0.027  Score=49.09  Aligned_cols=24  Identities=17%  Similarity=0.358  Sum_probs=20.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..-.++++|+.|+||||+++.+.+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            345788999999999999998876

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=93.99  E-value=0.029  Score=47.27  Aligned_cols=24  Identities=17%  Similarity=0.329  Sum_probs=20.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ....|+++|.+||||||+.+.|..
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998865

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=93.97  E-value=0.028  Score=50.48  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=20.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .-.++|+|++|+||||+++.+.+
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34699999999999999999986

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=93.95  E-value=0.037  Score=46.86  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..|++.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            5699999999999999998875

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=93.94  E-value=0.041  Score=43.64  Aligned_cols=22  Identities=36%  Similarity=0.468  Sum_probs=19.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..|++.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999988864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=93.93  E-value=0.032  Score=43.63  Aligned_cols=21  Identities=14%  Similarity=0.460  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999888865

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=93.93  E-value=0.029  Score=44.39  Aligned_cols=21  Identities=24%  Similarity=0.409  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -.+|+|+.|+|||||++++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999865

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=93.90  E-value=0.07  Score=45.81  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .+...|+|.|.+||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999998863

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=93.89  E-value=0.028  Score=49.51  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999999873

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=93.87  E-value=0.03  Score=47.84  Aligned_cols=21  Identities=33%  Similarity=0.586  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ++++|++|+|||||++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            999999999999999999864

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=93.85  E-value=0.085  Score=40.20  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .|++.|++|+|||++.+.+...
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCCT
T ss_pred             cEEEECCCCccHHHHHHHHHHh
Confidence            4899999999999998887653

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=93.85  E-value=0.019  Score=51.15  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|+.|+|||||++.+.+-
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5889999999999999999874

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=93.79  E-value=0.11  Score=47.78  Aligned_cols=23  Identities=30%  Similarity=0.199  Sum_probs=19.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHh
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFV  125 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~  125 (286)
                      +-.-|.|+|..++|||+|+|.++
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCchhHHHHHHH
Confidence            44567799999999999999664

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=93.75  E-value=0.03  Score=50.60  Aligned_cols=23  Identities=39%  Similarity=0.511  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++++|+.|+|||||++.+.+-
T Consensus        48 e~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           48 QRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCChHHHHHHHHhCC
Confidence            35899999999999999999873

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=93.72  E-value=0.23  Score=43.50  Aligned_cols=24  Identities=8%  Similarity=0.005  Sum_probs=21.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ...+.|.|+||+|||++++.+...
T Consensus        45 ~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           45 NKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             CCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=93.72  E-value=0.041  Score=46.26  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=21.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +.+.|+|.|.+||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988865

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=93.70  E-value=0.037  Score=43.85  Aligned_cols=21  Identities=33%  Similarity=0.553  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .|+|+|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999888865

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=93.70  E-value=0.031  Score=50.98  Aligned_cols=23  Identities=26%  Similarity=0.232  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =-++|+|+.|+|||||++.+.+.
T Consensus       168 gii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999999873

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=93.60  E-value=0.052  Score=45.14  Aligned_cols=25  Identities=16%  Similarity=0.209  Sum_probs=21.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +..-|+|.|.+|+||||+++.+...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4577999999999999999998763

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=93.58  E-value=2.3  Score=36.97  Aligned_cols=84  Identities=12%  Similarity=0.115  Sum_probs=50.1

Q ss_pred             EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEE-EEEeCCCCCCCCCCCCH
Q psy10504        152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL-LVANKLDLASHQREVPT  230 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-vv~nK~Dl~~~~~~~~~  230 (286)
                      +.+.++|+|+....... ...+..+|.++++...+ ..+++.+......+.......+.++. +|.|..+..        
T Consensus       164 ~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~e-~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~--------  233 (314)
T 3fwy_A          164 TDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--------  233 (314)
T ss_dssp             CSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--------
T ss_pred             CceEeeccCCcchhhhh-HhHHhhCCeEEEEeCCc-HHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch--------
Confidence            34677888875433322 23356789888888653 55666777666666654444455553 566876543        


Q ss_pred             HHHHHHHHhcCCCEE
Q psy10504        231 LDGQALAQSWGCPFI  245 (286)
Q Consensus       231 ~~~~~~~~~~~~~~~  245 (286)
                      .+.+.+++.++.+++
T Consensus       234 ~~v~~~a~~~~~~~l  248 (314)
T 3fwy_A          234 DEVDRFCKETNFRRL  248 (314)
T ss_dssp             HHHHHHHHHHTCCEE
T ss_pred             hHHHHHHHHhCCeEE
Confidence            234556666665544

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=93.56  E-value=0.041  Score=46.09  Aligned_cols=24  Identities=29%  Similarity=0.443  Sum_probs=20.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..+.|+|.|++|+||||+.+.+..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=93.53  E-value=0.049  Score=44.42  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ...|++.|.+|+||||+.+.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998865

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=93.49  E-value=0.03  Score=43.95  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ..+++.|++|+|||++++.+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45799999999999999988764

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=93.49  E-value=0.034  Score=52.07  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -.++|+|++||||||+++.+.+-
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35999999999999999999874

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=93.47  E-value=0.16  Score=45.23  Aligned_cols=21  Identities=38%  Similarity=0.495  Sum_probs=18.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHh
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFV  125 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~  125 (286)
                      .+ .+|+|+.|+|||||+++++
T Consensus        24 g~-~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           24 GI-TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EE-EEEECCTTSSHHHHHHHHH
T ss_pred             Ce-EEEECCCCCCHHHHHHHHH
Confidence            44 5699999999999999987

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=93.46  E-value=0.034  Score=47.91  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -++|+|++|+|||||+..+...
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5889999999999999988764

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=93.41  E-value=0.048  Score=42.17  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=18.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -.+|+|+.|+||||+++++.-
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999863

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=93.41  E-value=0.04  Score=44.76  Aligned_cols=22  Identities=27%  Similarity=0.241  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      --++++|++|+|||||+..+..
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999986

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=93.38  E-value=0.041  Score=45.17  Aligned_cols=24  Identities=13%  Similarity=0.124  Sum_probs=20.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ...+++.|++|+|||+|++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999988763

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=93.37  E-value=0.041  Score=46.23  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .+++.|++|+|||+|++.+.+.
T Consensus        47 ~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            4999999999999999999763

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=93.36  E-value=0.042  Score=45.42  Aligned_cols=23  Identities=13%  Similarity=0.130  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      --++|+|++|+|||||+..+...
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            35889999999999999999874

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=93.32  E-value=0.052  Score=42.36  Aligned_cols=21  Identities=33%  Similarity=0.490  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .|+|.|.+||||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999888865

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=93.31  E-value=0.048  Score=45.35  Aligned_cols=26  Identities=19%  Similarity=0.403  Sum_probs=21.7

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +.+...|+|+|.+|+||||+.+.|..
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999988875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=93.29  E-value=0.044  Score=44.15  Aligned_cols=23  Identities=30%  Similarity=0.330  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ..+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=93.24  E-value=0.042  Score=48.84  Aligned_cols=24  Identities=29%  Similarity=0.487  Sum_probs=21.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .=+++|+|+.|+|||||++.+.+.
T Consensus        71 Gq~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           71 GQRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999999999999885

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=93.23  E-value=0.043  Score=49.01  Aligned_cols=90  Identities=13%  Similarity=0.084  Sum_probs=48.6

Q ss_pred             EEEEeCCCcccchh------------hhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCC
Q psy10504        154 LEILDTAGTEQFAS------------MRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL  221 (286)
Q Consensus       154 l~l~DtpG~~~~~~------------~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl  221 (286)
                      ..++|+.|......            +........+-+++++|.+...  +.. .....+....   ++. ++++||.|.
T Consensus       243 ~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttgl--D~~-~~~~~~~~~~---g~t-~iiiThlD~  315 (359)
T 2og2_A          243 VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGL--NML-PQAREFNEVV---GIT-GLILTKLDG  315 (359)
T ss_dssp             EEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGG--GGH-HHHHHHHHHT---CCC-EEEEESCTT
T ss_pred             HHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCC--CHH-HHHHHHHHhc---CCe-EEEEecCcc
Confidence            56899999653321            1112335567788999955432  112 2222332211   333 677899885


Q ss_pred             CCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      .  .   .--....+....+.|+..+.  +|+.+++
T Consensus       316 ~--~---~gG~~lsi~~~~~~pI~~ig--~Ge~~~D  344 (359)
T 2og2_A          316 S--A---RGGCVVSVVEELGIPVKFIG--VGEAVED  344 (359)
T ss_dssp             C--S---CTHHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             c--c---cccHHHHHHHHhCCCEEEEe--CCCChHh
Confidence            4  1   12334556667788888776  4444443

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=93.14  E-value=0.11  Score=47.37  Aligned_cols=24  Identities=29%  Similarity=0.372  Sum_probs=20.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ...-|+++|.+||||||+.++|..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345688999999999999999876

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=93.14  E-value=0.064  Score=43.40  Aligned_cols=24  Identities=25%  Similarity=0.320  Sum_probs=21.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .+..|++.|.+||||||+.+.|..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            568899999999999999888865

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=93.09  E-value=0.04  Score=50.92  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=21.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus       138 Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          138 GPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCc
Confidence            457999999999999999999873

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=92.98  E-value=0.048  Score=50.73  Aligned_cols=141  Identities=14%  Similarity=0.145  Sum_probs=74.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC------cC-C-CccCCCc-----------cceEEEEEEECC--------------
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG------CF-M-EKYDPTI-----------EDFYRKEIEVDK--------------  149 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~------~~-~-~~~~~t~-----------~~~~~~~~~~~~--------------  149 (286)
                      ..-.++|+|..|+|||||++.|.+.      .+ . .......           ...........+              
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a  371 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA  371 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence            4467899999999999999998751      11 0 0000000           000011111000              


Q ss_pred             --eEEEEEEEeCCCcccchh-h----h--hh----c-ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEE
Q psy10504        150 --APCVLEILDTAGTEQFAS-M----R--DL----Y-IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLV  215 (286)
Q Consensus       150 --~~~~l~l~DtpG~~~~~~-~----~--~~----~-~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv  215 (286)
                        ..+.+.++||+|...... +    .  ..    + ....+-++||+|+..+.   +.......+....   ++. .++
T Consensus       372 ~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq---~al~~ak~f~~~~---~it-gvI  444 (503)
T 2yhs_A          372 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ---NAVSQAKLFHEAV---GLT-GIT  444 (503)
T ss_dssp             HHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH---HHHHHHHHHHHHT---CCS-EEE
T ss_pred             HhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH---HHHHHHHHHHhhc---CCC-EEE
Confidence              112367899999642221 1    1  11    1 12256789999977542   2222223333311   333 567


Q ss_pred             EeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        216 ANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       216 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      +||.|..  .+   .-....+....+.|+.++.  +|+++++
T Consensus       445 lTKLD~t--ak---gG~~lsi~~~~~~PI~fig--~Ge~vdD  479 (503)
T 2yhs_A          445 LTKLDGT--AK---GGVIFSVADQFGIPIRYIG--VGERIED  479 (503)
T ss_dssp             EECGGGC--SC---CTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             EEcCCCc--cc---ccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence            8999963  11   2235566677788888765  6666654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=92.90  E-value=0.045  Score=47.92  Aligned_cols=23  Identities=22%  Similarity=0.307  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .-++|+|..|||||||++.+.+.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            45789999999999999999964

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=92.85  E-value=0.17  Score=40.56  Aligned_cols=67  Identities=9%  Similarity=0.045  Sum_probs=48.3

Q ss_pred             EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCCC
Q psy10504        152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLA  222 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~  222 (286)
                      +.+.++|+|+..  .......+..+|.+++++..+.. + ..+..+...+..... .++.++.+|+|+.|..
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~  143 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM  143 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence            458899999865  34455667779999999988655 4 667776776665321 3467889999999853

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=92.85  E-value=0.055  Score=44.07  Aligned_cols=21  Identities=24%  Similarity=0.474  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -++|.|++|+|||++++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998876

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=92.84  E-value=0.054  Score=45.79  Aligned_cols=23  Identities=17%  Similarity=0.263  Sum_probs=20.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .-.|+|+|.+|+||||+.+.+..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999998865

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=92.70  E-value=0.059  Score=43.31  Aligned_cols=21  Identities=24%  Similarity=0.501  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +++.|++|+|||++++.+...
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988763

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=92.68  E-value=0.065  Score=50.53  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=21.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ..=.++++|+.|+|||||++.+.+-
T Consensus        46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           46 EGMVVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3346899999999999999999874

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=92.68  E-value=0.056  Score=50.20  Aligned_cols=21  Identities=33%  Similarity=0.537  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .++|+|+.|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999976

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=92.66  E-value=0.075  Score=45.66  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..|++.|.+||||||+.++|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999875

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=92.58  E-value=0.058  Score=51.33  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++++|+.|+|||||++.+.+-
T Consensus       370 ~~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          370 KTVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhhc
Confidence            47899999999999999998774

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=92.53  E-value=0.076  Score=42.72  Aligned_cols=21  Identities=24%  Similarity=0.376  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .|+|.|.+|+||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988865

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=92.51  E-value=0.066  Score=50.93  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=21.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .=.++++|+.|+|||||++.+.+-
T Consensus       369 G~~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          369 GKTVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            347899999999999999999874

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=92.51  E-value=0.061  Score=48.36  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -.++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999885

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=92.47  E-value=0.061  Score=49.37  Aligned_cols=25  Identities=28%  Similarity=0.340  Sum_probs=21.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +.=+++|+|+.|+|||||++.+.+.
T Consensus       156 ~Gq~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          156 RGQRMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3447999999999999999999875

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=92.41  E-value=0.064  Score=45.96  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ..+++.|++|+|||++++.+...
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46899999999999999999763

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=92.40  E-value=0.065  Score=45.60  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .+++.|++|+|||+|++++...
T Consensus        53 ~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           53 GILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5999999999999999999763

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=92.37  E-value=0.069  Score=44.66  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..+++.|++|+|||++++.+..
T Consensus        40 ~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999976

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=92.23  E-value=0.059  Score=45.54  Aligned_cols=26  Identities=23%  Similarity=0.180  Sum_probs=21.6

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .+..-|+|.|.+|+||||+++.|...
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            35578999999999999999888753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=92.20  E-value=0.071  Score=50.26  Aligned_cols=25  Identities=28%  Similarity=0.407  Sum_probs=21.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +.=-++++|+.|+|||||++.+.+-
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4456899999999999999999874

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=92.13  E-value=0.06  Score=44.21  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .+++.|+||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999888865

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=92.10  E-value=0.078  Score=50.75  Aligned_cols=25  Identities=20%  Similarity=0.298  Sum_probs=21.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ..=.++++|+.|+|||||++.+.+-
T Consensus       102 ~Gei~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          102 PGQVLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            3446899999999999999999873

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=92.04  E-value=0.1  Score=45.60  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ..-|+|+|++|||||+|...+...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            346889999999999999999763

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=91.99  E-value=0.076  Score=46.24  Aligned_cols=22  Identities=27%  Similarity=0.362  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .+++.|++|+|||+|++.+...
T Consensus        39 ~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999998763

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=91.97  E-value=0.073  Score=45.94  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=19.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .-+++.|+||+|||+|.+++...
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45778899999999999998764

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=91.97  E-value=0.095  Score=43.71  Aligned_cols=24  Identities=21%  Similarity=0.464  Sum_probs=20.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .+.+++++|.+||||||+..+|..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            457899999999999999888865

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=91.96  E-value=0.1  Score=44.91  Aligned_cols=23  Identities=17%  Similarity=0.495  Sum_probs=19.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ...+++.|++|+|||++++.+..
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999987665

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=91.95  E-value=0.078  Score=45.22  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=19.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      --++|+|++|+|||||+..+..
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4588999999999999998876

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=91.93  E-value=0.079  Score=45.83  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -|++.|++|+|||+|++.+...
T Consensus        51 ~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           51 GVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCcCHHHHHHHHHHH
Confidence            5899999999999999999863

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=91.91  E-value=0.073  Score=43.39  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=20.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ...|++.|.+|+||||+.+.|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999888865

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=91.84  E-value=0.085  Score=43.58  Aligned_cols=21  Identities=33%  Similarity=0.570  Sum_probs=18.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -+++.|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999877754

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=91.82  E-value=0.11  Score=42.72  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.3

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ++..-|+|.|.+|+||||+++.+..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHH
Confidence            4567799999999999999998865

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=91.81  E-value=0.086  Score=43.03  Aligned_cols=25  Identities=32%  Similarity=0.563  Sum_probs=21.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ....|+|+|++|+|||+|...|...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999999874

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=91.76  E-value=0.22  Score=43.40  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .|++.|++|+|||++++.+...
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            4899999999999999999653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=91.76  E-value=0.091  Score=50.25  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=21.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .=.++++|+.|+|||||++.+.+-
T Consensus       117 Ge~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          117 GMVVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCC
Confidence            346899999999999999999874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=91.73  E-value=0.099  Score=49.27  Aligned_cols=23  Identities=17%  Similarity=0.387  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++|+|+.|+|||||++.+.+-
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999884

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=91.71  E-value=0.087  Score=49.65  Aligned_cols=22  Identities=27%  Similarity=0.569  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++|+|+.|+|||||++.+.+-
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999874

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=91.69  E-value=0.066  Score=51.11  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=21.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .=.++++|+.|+|||||++.+.+-
T Consensus       381 G~~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          381 GQKVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             TCEEEEECCTTSSTTHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            447899999999999999998763

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=91.68  E-value=0.1  Score=43.38  Aligned_cols=27  Identities=7%  Similarity=-0.023  Sum_probs=21.7

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      |.+.+=|++-|.++.|||+|++++.+.
T Consensus        26 P~nkilvl~~~~~~~~~~~~~~~lf~~   52 (233)
T 3uc9_A           26 PQNKILVLSDHPHNFLKTQFLQDLFHC   52 (233)
T ss_dssp             CCCEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred             CCCceEEEecCcccccHHHHHHHHhcc
Confidence            445555666699999999999999986

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=91.66  E-value=0.06  Score=51.20  Aligned_cols=24  Identities=29%  Similarity=0.220  Sum_probs=20.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .=.++++|+.|+|||||++.+.+-
T Consensus       367 G~~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          367 GETVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcC
Confidence            347899999999999999887763

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=91.62  E-value=0.082  Score=46.64  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -.++|.|++|+|||||++.+...
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999998763

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=91.57  E-value=0.12  Score=43.64  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=21.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ....+++.|++|+|||++++++...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3457999999999999999998763

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=91.49  E-value=0.074  Score=50.66  Aligned_cols=23  Identities=39%  Similarity=0.351  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++++|+.|+|||||++.+.+-
T Consensus       370 e~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          370 SLVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             CEEEEECSSSSSHHHHHHTTTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999988763

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=91.47  E-value=0.11  Score=42.19  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=18.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -.+|+|+.|+||||+++++.-
T Consensus        25 ~~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHHH
Confidence            457999999999999998853

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=91.44  E-value=0.096  Score=45.38  Aligned_cols=85  Identities=15%  Similarity=0.070  Sum_probs=47.4

Q ss_pred             EEEEEEeCCCcccchh--hh--hhccc--CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504        152 CVLEILDTAGTEQFAS--MR--DLYIK--NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ  225 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~--~~--~~~~~--~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~  225 (286)
                      +.+.++||+|......  +.  ...+.  ..+.+++|+|++..  .+.+.++...+.   . -+. .-+|.||.|... .
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~-l~~-~giVltk~D~~~-~  254 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---S-VPV-NQYIFTKIDETT-S  254 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---S-SCC-CEEEEECTTTCS-C
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---c-CCC-CEEEEeCCCccc-c
Confidence            3488999999664332  11  12222  36788999988753  233433322221   1 122 346679999751 1


Q ss_pred             CCCCHHHHHHHHHhcCCCEEEEe
Q psy10504        226 REVPTLDGQALAQSWGCPFIEAS  248 (286)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~vS  248 (286)
                          ...........+.|+..++
T Consensus       255 ----~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 ----LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             ----CHHHHHHHHTCSCCCSEEC
T ss_pred             ----hhHHHHHHHHHCcCEEEEE
Confidence                1245566667888876665

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=91.43  E-value=0.099  Score=44.76  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ..+++.|++|+|||++++.+...
T Consensus        51 ~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998763

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=91.37  E-value=0.13  Score=42.83  Aligned_cols=23  Identities=22%  Similarity=0.289  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .-|++.|..|+||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            56899999999999999998763

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=91.34  E-value=0.11  Score=49.60  Aligned_cols=22  Identities=18%  Similarity=0.463  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++|+|+.|+|||||++.+.+-
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999884

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=91.34  E-value=0.34  Score=41.77  Aligned_cols=21  Identities=24%  Similarity=0.567  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .+++.|++|+|||++++.+..
T Consensus        40 ~vll~G~~GtGKT~la~~i~~   60 (324)
T 1hqc_A           40 HLLLFGPPGLGKTTLAHVIAH   60 (324)
T ss_dssp             CCEEECCTTCCCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999876

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=91.34  E-value=0.1  Score=46.27  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++|.|++|+|||+|++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998864

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=91.14  E-value=0.023  Score=47.46  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ++|+|+.|+|||||++.+.+-
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~   50 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTA   50 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            479999999999999999873

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=91.12  E-value=0.16  Score=43.56  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            46899999999999999988763

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=91.07  E-value=0.11  Score=45.67  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +++.|++|+||||+++.+.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998874

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=91.05  E-value=0.15  Score=44.82  Aligned_cols=22  Identities=18%  Similarity=0.451  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..|+|+|++|+|||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=91.02  E-value=0.12  Score=45.12  Aligned_cols=91  Identities=18%  Similarity=0.169  Sum_probs=51.1

Q ss_pred             EEEEEeCCCcccchh-h-------hhh----cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCC
Q psy10504        153 VLEILDTAGTEQFAS-M-------RDL----YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD  220 (286)
Q Consensus       153 ~l~l~DtpG~~~~~~-~-------~~~----~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~D  220 (286)
                      .+.++||||...... +       ...    .-...+.+++|+|+..+  .+.+.+. ..+...   .++ .-+|+||.|
T Consensus       188 dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a-~~~~~~---~~i-~gvVlTk~D  260 (306)
T 1vma_A          188 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQA-KIFKEA---VNV-TGIILTKLD  260 (306)
T ss_dssp             SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHH-HHHHHH---SCC-CEEEEECGG
T ss_pred             CEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHH-HHHHhc---CCC-CEEEEeCCC
Confidence            478999999532221 1       111    11347889999998733  2223322 223321   122 346679999


Q ss_pred             CCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       221 l~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      .. . +   .-....+....+.|+.+++  .|+.+++
T Consensus       261 ~~-~-~---gG~~l~~~~~~~~Pi~~i~--~Ge~~~d  290 (306)
T 1vma_A          261 GT-A-K---GGITLAIARELGIPIKFIG--VGEKAED  290 (306)
T ss_dssp             GC-S-C---TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             Cc-c-c---hHHHHHHHHHHCCCEEEEe--CCCChhh
Confidence            64 1 1   1235677778899988886  4554544

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=91.00  E-value=0.12  Score=49.45  Aligned_cols=22  Identities=27%  Similarity=0.551  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++|+|+.|+|||||++.+.+-
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl  401 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGA  401 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            3799999999999999999884

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=90.90  E-value=0.13  Score=45.55  Aligned_cols=22  Identities=27%  Similarity=0.661  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999988875

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=90.75  E-value=0.065  Score=46.30  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=17.5

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +.+.|+|.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999888765

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=90.70  E-value=0.18  Score=44.55  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .-|+|+|++|+|||+|...|...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999863

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=90.64  E-value=0.13  Score=45.06  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      --|++.|++|+|||+|++++...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46899999999999999999864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=90.60  E-value=0.12  Score=45.74  Aligned_cols=25  Identities=24%  Similarity=0.256  Sum_probs=21.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +.--+.|+|++|+|||||+..+...
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456889999999999999999874

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=90.56  E-value=0.13  Score=44.95  Aligned_cols=21  Identities=19%  Similarity=0.460  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +++.|++|+|||++++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988764

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.53  E-value=0.13  Score=46.92  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -|++.|+||+|||+|++++.+.
T Consensus       208 GiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999999863

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=90.47  E-value=0.11  Score=49.01  Aligned_cols=25  Identities=32%  Similarity=0.519  Sum_probs=21.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +...|+|+|.+|||||||++.|.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            4567999999999999999998764

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=90.46  E-value=0.14  Score=44.53  Aligned_cols=22  Identities=36%  Similarity=0.519  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -++|.|++|+|||||++.+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            5889999999999999999764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=90.44  E-value=0.13  Score=44.76  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ..|++.|++|+|||+|++++...
T Consensus        52 ~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999999763

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=90.40  E-value=0.14  Score=42.80  Aligned_cols=26  Identities=31%  Similarity=0.351  Sum_probs=21.3

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .++..-|+|.|.+|+||||+++.+..
T Consensus        24 ~~~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           24 AMNAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             --CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34566799999999999999998865

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=90.36  E-value=0.12  Score=45.64  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ..++|.|++|+|||++++.+...
T Consensus        45 ~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           45 SNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998763

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=90.34  E-value=0.21  Score=43.52  Aligned_cols=22  Identities=23%  Similarity=0.496  Sum_probs=19.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .-|+|+|++|||||+|...+..
T Consensus        11 ~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHH
Confidence            4588999999999999999976

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.32  E-value=0.14  Score=46.80  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      --|++.|+||+|||+|++++.+.
T Consensus       216 rGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeeEEECcCCCCHHHHHHHHHHH
Confidence            46999999999999999999873

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=90.30  E-value=0.17  Score=44.97  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=19.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ...|+++|.+|+||||+.+.+..
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            35799999999999999887765

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=90.27  E-value=0.07  Score=45.00  Aligned_cols=20  Identities=30%  Similarity=0.571  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10504        107 VVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~  126 (286)
                      +++.|++|+|||+|++.+..
T Consensus        47 vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999999876

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=90.10  E-value=0.17  Score=50.98  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCF  129 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~  129 (286)
                      .++++|+.|+|||||++.+.++.+
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            589999999999999999997644

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=90.08  E-value=0.21  Score=45.21  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=22.7

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHh
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFV  125 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~  125 (286)
                      ...+.+|++++|...|||||++.++.
T Consensus        36 ~~~~~~klLLLG~geSGKSTi~KQmk   61 (402)
T 1azs_C           36 VYRATHRLLLLGAGESGKSTIVKQMR   61 (402)
T ss_dssp             CCTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred             HhhccceEEEecCCCCchhhHHHHHH
Confidence            34578999999999999999988875

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=90.06  E-value=0.17  Score=44.02  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=20.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ...+++.|++|+|||+|+.++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999888764

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=90.02  E-value=0.14  Score=44.57  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -++|.|++|+|||+|++.+...
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~   53 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINE   53 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            6889999999999999998763

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=89.95  E-value=0.14  Score=45.15  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -.++|.|++|+|||++++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998763

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.91  E-value=0.16  Score=46.50  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      --|++.|+||+|||+|++++.+.
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	286
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-42
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-41
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	6e-39
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-37
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-37
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-36
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-36
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	3e-36
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	6e-35
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	9e-35
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-34
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	2e-34
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-34
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	7e-33
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	3e-32
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-32
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-31
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-31
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-31
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	4e-31
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	8e-31
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	3e-29
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	5e-29
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-28
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	1e-28
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	3e-28
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	3e-28
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	5e-28
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	6e-28
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-26
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	9e-26
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	3e-25
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	6e-25
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	6e-25
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	8e-25
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	5e-23
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-23
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-23
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-22
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-22
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	4e-22
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-22
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-22
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-21
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	5e-21
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-20
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-20
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-19
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-19
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-13
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-13
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-10
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-10
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	3e-09
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	7e-09
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	7e-08
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	1e-05
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	2e-05
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	8e-05
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	7e-04
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.001
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	0.001
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	0.002
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	0.002
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	0.003

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (357), Expect = 1e-42
 Identities = 123/167 (73%), Positives = 147/167 (88%), Gaps = 1/167 (0%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MRE+KVVVLGSGGVGKSALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQFASMRDLYIKNGQGF++VYSL N  +FQDIK M++ I RVK  E+VP++LV NK+DL
Sbjct: 61  TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNF 268
              +REV + +G+ALA+ WGCPF+E SAK+KT V+E+FAEIVR+MN+
Sbjct: 121 -ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  138 bits (348), Expect = 3e-41
 Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 3/169 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK++++G  GVGK+ +  +F    F   +  TI  DF  + IE+D     L+I DTAG E
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           +F ++   Y +   G ++VY +TN  +F +I+     I     ++   ++L        +
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV--N 124

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEK 272
            +R+V    G+ LA  +G  F+E SAK   NV   F  + R++    +K
Sbjct: 125 DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  132 bits (332), Expect = 6e-39
 Identities = 61/163 (37%), Positives = 93/163 (57%), Gaps = 4/163 (2%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
            K++++G  GVGKS L V+FV   F   +  TI  DF  K ++++     L+I DTAG E
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           +F ++   Y +   G ++VY +T+  TF +IKQ  +       ++   +LLV NK D+  
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFK-TVNEHANDEAQLLLVGNKSDM-- 119

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             R V    G+ALA+  G PFIE+SAKN  NVNE+F  + + +
Sbjct: 120 ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 1e-37
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 3/163 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FK+V++G+ GVGK+ L  +F  G F      TI  DF  K +E++     L+I DTAG E
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           +F S+   Y ++    ++ Y +T   +F+ + +    I +   S +V  +LV NK+DL +
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDL-A 123

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
            +REV     +  +++    ++E SAK   NV ++F ++   +
Sbjct: 124 ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 3e-37
 Identities = 56/170 (32%), Positives = 82/170 (48%), Gaps = 3/170 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTA 160
           +   K++++G  GVGKS+L ++F    F  +   TI  DF  K I VD     L I DTA
Sbjct: 5   LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 64

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
           G E+F ++   Y +  QG ++VY +T   TF  +      +        +  +LV NK+D
Sbjct: 65  GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 124

Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNP 270
                REV   +G   A+     FIEASAK    V   F E+V ++   P
Sbjct: 125 --KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 172

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (316), Expect = 1e-36
 Identities = 100/166 (60%), Positives = 126/166 (75%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           MRE+K+VVLGSGGVGKSALTVQFV G F+EKYDPTIED YRK++EVD   C+LEILDTAG
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
           TEQF +MRDLY+KNGQGF +VYS+T   TF D++ ++E I RVK +E VP++LV NK DL
Sbjct: 61  TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
              +            Q   C F+E+SAK+K NVNE+F ++VR++N
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 2e-36
 Identities = 81/165 (49%), Positives = 120/165 (72%), Gaps = 2/165 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           M E+K+VV+G+GGVGKSALT+Q +   F+++YDPTIED YRK++ +D   C+L+ILDTAG
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
            E++++MRD Y++ G+GF+ V+++ N  +F+DI Q +E I RVK S+ VP++LV NK D 
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD- 119

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
               R V +   Q LA+S+G P+IE SAK +  V + F  +VRE+
Sbjct: 120 -LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  126 bits (317), Expect = 3e-36
 Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 3/171 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FYRKEIEVDKAPCVLEILDTAGTE 163
           FK++++G+ GVGKS L ++F    +   Y  TI   F  K +E+D     L+I DTAG E
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           +F ++   Y +   G ++VY +T+  +F  +K   + I R   +  V  LLV NK     
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNK-CDLK 124

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
            +R V     +  A +   PF+E SA + TNV + F  + R++  +  + N
Sbjct: 125 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN 175

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 6e-35
 Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 3/163 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FYRKEIEVDKAPCVLEILDTAGTE 163
           FKVV++G  GVGKS L  +F    F  +   TI   F  + I+VD      +I DTAG E
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           ++  +   Y +   G ++VY +  H T++++++  + + R      + I+LV NK D   
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL-RDHADSNIVIMLVGNKSD-LR 122

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           H R VPT + +A A+     FIE SA + TNV E F  I+ E+
Sbjct: 123 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 9e-35
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 12/173 (6%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYR-----------KEIEVDKAPCV 153
            K++ LG  GVGK+    ++    F  K+  T+   +R                      
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL 213
           L++ DTAG E+F S+   + ++  GF++++ LT+  +F +++     +      E   I+
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 214 LVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           L+ NK DL   QREV     + LA  +G P+ E SA    NV +    ++  +
Sbjct: 126 LIGNKADL-PDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 177

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  121 bits (303), Expect = 1e-34
 Identities = 71/166 (42%), Positives = 110/166 (66%), Gaps = 1/166 (0%)

Query: 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
           ++   KV+++GSGGVGKSALT+QF+   F+E Y+PT  D YRK++ +D     ++ILDTA
Sbjct: 1   SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTA 60

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
           G E +A++RD Y ++G+GF+ V+S+T   +F      +E I RVK  E VP LLV NK D
Sbjct: 61  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 120

Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           L   +R+V   + +  A  W   ++E SAK + NV+++F +++RE+
Sbjct: 121 L-EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 2e-34
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 4/164 (2%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDP--TIEDFYRKEIEVDKAPCVLEILDTAGT 162
           FKV+++G  GVGK+ L V+F  G F+          DF  K ++VD     L++ DTAG 
Sbjct: 7   FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
           E+F S+   Y ++    +++Y +TN  +F +I+     I        V ++L+ NK+D A
Sbjct: 67  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSA 125

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
            H+R V   DG+ LA+ +G PF+E SAK   NV+  F  I +E+
Sbjct: 126 -HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 2e-34
 Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 3/163 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK +++G  GVGKS L  QF    FM     TI  +F  + IEV      L+I DTAG E
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           +F ++   Y +   G ++VY +T   T+  +         +  +    I+L+ NK D   
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKAD-LE 122

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
            QR+V   + +  A+  G  F+EASAK   NV + F E  +++
Sbjct: 123 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 7e-33
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 3/163 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FK+V LG   VGK++L  +F+   F   Y  TI  DF  K + ++     L++ DTAG E
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           +F S+   YI++    VVVY +TN ++FQ   +  + +   +GS+ V I+LV NK DLA 
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD-VIIMLVGNKTDLA- 118

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
            +R+V   +G+  A+     FIE SAK   NV ++F  +   +
Sbjct: 119 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (287), Expect = 3e-32
 Identities = 73/164 (44%), Positives = 106/164 (64%), Gaps = 1/164 (0%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
              K+VV+G GGVGKSALT+QF+   F+  YDPTIED Y K   VD  P  L+ILDTAG 
Sbjct: 5   ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
           E+F +MR+ Y++ G GF++V+++ +  +F ++ ++   I RVK  +  P++LV NK DL 
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL- 123

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             QR+VP  +  A   S    + EASAK + NV+E F ++VR +
Sbjct: 124 ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (287), Expect = 4e-32
 Identities = 53/163 (32%), Positives = 79/163 (48%), Gaps = 3/163 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
           FK +V+G+ G GKS L  QF+   F +  + TI  +F  K I V      L+I DTAG E
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           +F S+   Y +   G ++VY +T+  T+  +         +  S+ + I+L  NK     
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNK-KDLD 123

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             REV  L+    AQ     F+E SA    NV E F +  R++
Sbjct: 124 ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 166

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 1e-31
 Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 13/189 (6%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           M+  K VV+G G VGK+ L + + +  F  +Y PT+ D Y   + +   P  L + DTAG
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
            E +  +R L       F+V +S+ +  +F+++K+            + P LLV  ++DL
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE-ITHHCPKTPFLLVGTQIDL 119

Query: 222 -----------ASHQREVPTLDGQALAQS-WGCPFIEASAKNKTNVNEMFAEIVREMNFN 269
                       + Q+ +     + LA+      ++E SA  +  +  +F E +      
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP 179

Query: 270 PEKDNASFC 278
           PE   +  C
Sbjct: 180 PEPKKSRRC 188

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 2e-31
 Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEI-EVDKAPCVLEILDTAGTE 163
           FK +++G  GVGKS L +QF    F   +D TI   +   +  +D     L+I DTAG E
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
            F S+   Y +   G ++VY +T   TF  +    E   R   S  + I+L+ NK D   
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA-RQHSSSNMVIMLIGNKSD-LE 121

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
            +R+V   +G+A A+  G  F+E SAK   NV E F    +E+
Sbjct: 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 164

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  112 bits (281), Expect = 2e-31
 Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYR-KEIEVDKAPCVLEILDTAGTE 163
           FK++++G+  VGK++   ++    F   +  T+   ++ K I  +     L+I DTAG E
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           ++ ++   Y +   GF+++Y +TN  +F  ++       +    +   +LLV NK     
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWST-QIKTYSWDNAQVLLVGNK-CDME 123

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
            +R V +  G+ LA   G  F EASAK+  NV + F  +V  +
Sbjct: 124 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  112 bits (279), Expect = 4e-31
 Identities = 76/166 (45%), Positives = 114/166 (68%), Gaps = 2/166 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
           +  +K+VV+G GGVGKSALT+QF    F+  YDPTIED Y K  E+D    +L++LDTAG
Sbjct: 2   LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAG 61

Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
            E+F++MR+ Y++ G GF++VYS+T+  +F+ + +  +LI RVK  E  P++LVANK+DL
Sbjct: 62  QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 121

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAK-NKTNVNEMFAEIVREM 266
             H R+V    G+ +A  +  P+IE SAK    NV++ F ++VR +
Sbjct: 122 M-HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 8e-31
 Identities = 76/167 (45%), Positives = 118/167 (70%), Gaps = 2/167 (1%)

Query: 101 TMRE-FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDT 159
           +M+E +++VV+G GGVGKSALT+QF+   F+  YDPTIED Y K+  +D     L+ILDT
Sbjct: 1   SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDT 60

Query: 160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKL 219
           AG E+F +MR+ Y++ G+GF++V+S+T+  +F++I + +  I RVK  +  P++L+ NK 
Sbjct: 61  AGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKA 120

Query: 220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           DL  HQR+V   +GQ LA+     ++EASAK + NV++ F E+VR +
Sbjct: 121 DL-DHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 3e-29
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 13/180 (7%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
           +  K VV+G G VGK+ L + + +  F  +Y PT+ D Y   + VD  P  L + DTAG 
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
           E +  +R L        ++ +SL +  +F++++               PI+LV  KLDL 
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPE-VRHHCPNTPIILVGTKLDLR 122

Query: 223 SHQREV-----------PTLDGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
             +  +               G A+A+  G   ++E SA  +  +  +F E +R +   P
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 5e-29
 Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 13/173 (7%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164
            K VV+G G VGK+ L + + +  F E+Y PT+ D Y   + V     +L + DTAG E 
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69

Query: 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS- 223
           +  +R L       F++ +S+ N  +FQ++K+      + + +  VP LL+  ++DL   
Sbjct: 70  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPFLLIGTQIDLRDD 128

Query: 224 ----------HQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVRE 265
                      ++ +    GQ LA+  G C ++E SA  +  +  +F E +  
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 181

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 1e-28
 Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 3/166 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTA 160
           +RE KV +LG  GVGKS++  +FV   F    +PTI   F  K ++         I DTA
Sbjct: 2   LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 61

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
           G E+F ++  +Y +     ++VY +T   TF  +K       R  G   + + +  NK D
Sbjct: 62  GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVR-ELRQHGPPSIVVAIAGNKCD 120

Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           L   +  +   D +  A S    F+E SAKN  N+NE+F EI R +
Sbjct: 121 LTDVREVMER-DAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 1e-28
 Identities = 56/167 (33%), Positives = 92/167 (55%), Gaps = 7/167 (4%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIE-VDKAPCVLEILDTAGTE 163
           FKV++LG GGVGKS+L  ++V+  F  +   TI   +  +   VD     ++I DTAG E
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITR---VKGSERVPILLVANKLD 220
           +F S+R  + +     ++ +S+ +  +FQ++   K+       VK  E  P +++ NK+D
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126

Query: 221 LASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVREM 266
           +   +R+V T + QA  +  G  P+ E SAK+ TNV   F E VR +
Sbjct: 127 I--SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (260), Expect = 3e-28
 Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 6/165 (3%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAG 161
           R FK++V+G   VGK+ LT +F +G F ++ + TI  DF  + +++D     +++ DTAG
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60

Query: 162 TEQF-ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
            E+F  SM   Y +N    V VY +TN  +F  +    E   +   +  +P +LV NK D
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120

Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKT---NVNEMFAEI 262
           L     +VPT   Q  A +   P  E SAKN     +V  +F  +
Sbjct: 121 L-RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 3e-28
 Identities = 74/163 (45%), Positives = 109/163 (66%), Gaps = 2/163 (1%)

Query: 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163
           +++V V G+GGVGKS+L ++FV G F E Y PT+ED YR+ I  DK+ C L+I DT G+ 
Sbjct: 2   DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 61

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGS-ERVPILLVANKLDLA 222
           QF +M+ L I  G  F++VYS+T+  + +++K + E I  +KG  E +PI+LV NK D  
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD-E 120

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
           S  REV + + +ALA++W C F+E SAK   NV E+F E++  
Sbjct: 121 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNL 163

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 5e-28
 Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 3/163 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYR-KEIEVDKAPCVLEILDTAGTE 163
           FKVV+LG G VGK++L +++    F +K+  T+   +  K++ +      L I DTAG E
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           +F ++  +Y ++  G ++VY +T+  +FQ +K    +    K       L +        
Sbjct: 64  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNW--VKELRKMLGNEICLCIVGNKIDLE 121

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
            +R V   + ++ A+S G      SAK    + E+F ++ + M
Sbjct: 122 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 6e-28
 Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 3/166 (1%)

Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTA 160
           + +FK+V+LG   VGKS+L ++FV G F E  + TI   F  + + +D      EI DTA
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
           G E++ S+  +Y +  Q  +VVY +TN  +F   K   +   + + S  + I L  NK D
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK-ELQRQASPNIVIALSGNKAD 122

Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             +++R V   + Q+ A      F+E SAK   NVNE+F  I +++
Sbjct: 123 -LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 2e-26
 Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 13/174 (7%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164
            K+V++G G  GK+ L +      F E Y PT+ + Y  +IEVD     L + DTAG E 
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS- 223
           +  +R L   +    ++ +S+ +  + ++I +      +      VPI+LV NK DL + 
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 121

Query: 224 ----------HQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
                      Q  V   +G+ +A   G   ++E SAK K  V E+F    R  
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.2 bits (243), Expect = 9e-26
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 6/168 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYR--KEIEVDKAPCVLEILDTAGT 162
            KV++LG  GVGK++L  ++V+  + ++Y  TI   +   +          +++ DTAG 
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITR---VKGSERVPILLVANKL 219
           E+F S+   + +     V+VY +TN  +F++IK  ++       V   E  P +++ NK+
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 220 DLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVREM 266
           D    ++ V     Q LA+S G  P    SAKN  NV+  F EI R  
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.7 bits (239), Expect = 3e-25
 Identities = 60/164 (36%), Positives = 100/164 (60%), Gaps = 1/164 (0%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
           +  K+ +LG   VGKS+LT+QFV G F++ YDPTIE+ + K I V+     L+++DTAG 
Sbjct: 3   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 62

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
           ++++     Y  +  G+++VYS+T+  +F+ IK +   +  + G  ++PI+LV NK DL 
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             +      +G+ALA+SW   F+E+SAK      ++F  I+ E 
Sbjct: 123 MERVISYE-EGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.3 bits (238), Expect = 6e-25
 Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 14/174 (8%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           K+VV+G    GK+AL   F   CF E Y PT+ + Y    E+D     L + DT+G+  +
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 63

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS-- 223
            ++R L   +    ++ + ++   T   + +  +   +        +LLV  K DL +  
Sbjct: 64  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDV 122

Query: 224 ---------HQREVPTLDGQALAQSWG-CPFIEASAKNKTN-VNEMFAEIVREM 266
                     Q  V    G  +A+  G   +IE SA    N V ++F       
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 176

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.9 bits (237), Expect = 6e-25
 Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 4/164 (2%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDK-APCVLEILDTAGTEQ 164
           K+V+LG   VGKS++ ++FVS  F E  +PTI   +  +           EI DTAG E+
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD--LA 222
           FAS+  +Y +N Q  +VVY +T   +F   +   +     + S+ + I LV NK+D    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVK-ELHEQASKDIIIALVGNKIDMLQE 123

Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
             +R+V   +G+ LA+  G  F E SAK   NVN++F  I  ++
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.5 bits (236), Expect = 8e-25
 Identities = 59/164 (35%), Positives = 99/164 (60%), Gaps = 3/164 (1%)

Query: 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163
           E K+ + G  GVGKSAL V+F++  F+ +YDPT+E  YR +  +D     +EI      +
Sbjct: 2   EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEI-LDTAGQ 60

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           +    R+ +++ G+GFV+VY +T+  +F+++  +K ++  +K  + V ++LV NK DL  
Sbjct: 61  EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD- 119

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAK-NKTNVNEMFAEIVREM 266
           H R+V T +G+ LA    C F E SA   + N+ E+F E+ RE+
Sbjct: 120 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 163

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.9 bits (224), Expect = 5e-23
 Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 6/167 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
           FK+V++G GG GK+    + ++G F +KY  T+  + +      ++ P    + DTAG E
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
           +F  +RD Y    Q  ++++                    V+  E +PI+L  NK+D+  
Sbjct: 64  KFGGLRDGYYIQAQCAIIMF--DVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 121

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNP 270
            +            +     + + SAK+  N  + F  + R++  +P
Sbjct: 122 RK---VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 165

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (224), Expect = 6e-23
 Identities = 40/170 (23%), Positives = 82/170 (48%), Gaps = 10/170 (5%)

Query: 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
           ++ E ++ VLG    GKS+L  +F++G + +  + T  + Y+KE+ VD    ++ I    
Sbjct: 2   SIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLI---- 56

Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSER--VPILLVANK 218
             E+  +    +       + V+SL + ++FQ + ++   ++ ++G  R  + + LV  +
Sbjct: 57  -REEAGAPDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 115

Query: 219 LD-LASHQREVPTLDGQALAQS-WGCPFIEASAKNKTNVNEMFAEIVREM 266
               AS  R V     +AL      C + E  A    NV+ +F E+ +++
Sbjct: 116 DRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 165

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 90.4 bits (223), Expect = 8e-23
 Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 6/169 (3%)

Query: 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDT 159
           F  +E ++++LG    GK+ +  +   G  +     TI         V        + D 
Sbjct: 8   FGNKEMRILMLGLDAAGKTTILYKLKLGQSVT----TIPTVGFNVETVTYKNVKFNVWDV 63

Query: 160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANK- 218
            G ++   +   Y    QG + V    +     + +Q    I   +      IL+ ANK 
Sbjct: 64  GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 123

Query: 219 -LDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
            L  A    E+    G    +        + A +   + E    +    
Sbjct: 124 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 2e-22
 Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 6/169 (3%)

Query: 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDT 159
           F  +E KV+++G    GK+ +  QF     +        +      E+        + D 
Sbjct: 11  FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDI 66

Query: 160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKL 219
            G E   S  + Y  N +  +VV   T+       ++    +   +   +  +L+ ANK 
Sbjct: 67  GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQ 126

Query: 220 DL--ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           D+       E+         +          A     + +    ++  +
Sbjct: 127 DVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 88.6 bits (218), Expect = 3e-22
 Identities = 25/163 (15%), Positives = 56/163 (34%), Gaps = 6/163 (3%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           +++++G    GK+ +  +   G    +   TI         V+       + D  G ++ 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLG----EIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 57

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL--AS 223
             +   Y +N QG + V    +     + ++    +          +L+ ANK DL  A 
Sbjct: 58  RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 117

Query: 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           +  E+    G    +          A +   + E    +  ++
Sbjct: 118 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.6 bits (218), Expect = 4e-22
 Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 2/168 (1%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164
           +KV++LG+ GVGKSAL   F                Y + I VD     L + D    + 
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH 224
              +    +  G  +V+VYS+T+  +F+   +++  + R + ++ VPI+LV NK D    
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSD-LVR 119

Query: 225 QREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEK 272
            REV   +G+A A  + C FIE SA    NV  +F  +VR++    + 
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDS 167

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 89.0 bits (219), Expect = 4e-22
 Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 5/166 (3%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FYRKEIEVDKAPCVLEILDTAGTE 163
            KV++LG  GVGK++L  Q+V+  F  +Y  TI   F  KE+ VD     ++I DTAG E
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGS---ERVPILLVANKLD 220
           +F S+   + +     V+V+ +T  +TF+ +   ++           E  P +++ NK+D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           L  +++                P+ E SAK   NV + F  I R  
Sbjct: 123 L-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 88.5 bits (218), Expect = 4e-22
 Identities = 29/166 (17%), Positives = 56/166 (33%), Gaps = 6/166 (3%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
           +E ++++LG    GK+ L  Q  S            +    + +       L + D  G 
Sbjct: 15  QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ----GFKLNVWDIGGQ 70

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL- 221
            +       Y +N    + V    +   F++  Q    +   +    VP+L+ ANK DL 
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 222 -ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
            A+   E+         +         SA     V +    + + +
Sbjct: 131 TAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.7 bits (213), Expect = 2e-21
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 4/162 (2%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQ 164
           K+VV+G+G VGKS++  ++  G F + Y  TI  DF  ++I+V+     L + DTAG E+
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH 224
           F ++   Y +  Q  V+V+S T+  +F+ I   +E +    G     ++     L     
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL---D 120

Query: 225 QREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
              +   + + LA+     F   S K   NV+E+F  +  + 
Sbjct: 121 DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (210), Expect = 5e-21
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 4/167 (2%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
             ++VV++G  GVGKS L   F           +   ED Y + + VD     + +LD  
Sbjct: 2   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 61

Query: 161 -GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKL 219
               +   + D  ++ G  +++VYS+T+  +F+   +++  + R + +E +PI+LV NK 
Sbjct: 62  ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 121

Query: 220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           D     REV   +G+A A  + C FIE SA  + NV E+F  IVR++
Sbjct: 122 D-LVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 84.6 bits (208), Expect = 1e-20
 Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 6/166 (3%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
           +E ++++LG  G GK+ +  +   G  +        +      +       L + D  G 
Sbjct: 16  KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK----NLKLNVWDLGGQ 71

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
                    Y  +    + V   T+        +   L+ + +  +   +L+ ANK D  
Sbjct: 72  TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 131

Query: 223 SHQ--REVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
                 EV         +      + +SA     + E    ++  +
Sbjct: 132 GALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 84.0 bits (206), Expect = 2e-20
 Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 5/165 (3%)

Query: 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163
           E ++ ++G    GK+       SG F E   PT+    RK   + K    +++ D  G  
Sbjct: 2   EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK---ITKGNVTIKLWDIGGQP 58

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-- 221
           +F SM + Y +     V +    +    +  K     +      + +P+L++ NK DL  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           A  ++E+      +  Q         S K K N++     +++  
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 80.9 bits (198), Expect = 2e-19
 Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 6/167 (3%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
           RE ++++LG    GK+ +  +F      E  D            ++     L I D  G 
Sbjct: 1   RELRLLMLGLDNAGKTTILKKFNG----EDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQ 56

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
           +   S    Y ++  G + V    +    QD ++  + +   +      +L+ ANK DL 
Sbjct: 57  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 116

Query: 223 SHQ--REVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
                  +         +S        SA    ++      ++ +++
Sbjct: 117 GALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 163

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 79.8 bits (195), Expect = 6e-19
 Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 6/166 (3%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
           RE ++++LG  G GK+ +  +   G    +   TI         V       ++ D  G 
Sbjct: 4   REMRILILGLDGAGKTTILYRLQVG----EVVTTIPTIGFNVETVTYKNLKFQVWDLGGL 59

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL- 221
                    Y  N    + V    +       K     +   +   +  +++ ANK D+ 
Sbjct: 60  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 119

Query: 222 -ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
            A    E+    G    +       + SA   T ++E    +V  +
Sbjct: 120 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 65.9 bits (159), Expect = 1e-13
 Identities = 29/182 (15%), Positives = 52/182 (28%), Gaps = 18/182 (9%)

Query: 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDT 159
              +  K+V LG    GK+ L          +              E+  A       D 
Sbjct: 9   LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE----ELTIAGMTFTTFDL 64

Query: 160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKL 219
            G  Q   +   Y+    G V +    +H    + K+  + +   +    VPIL++ NK+
Sbjct: 65  GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKI 124

Query: 220 DLASH-----------QREVPTLDGQALAQSWG---CPFIEASAKNKTNVNEMFAEIVRE 265
           D                    T  G    +            S   +    E F  + + 
Sbjct: 125 DRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184

Query: 266 MN 267
           ++
Sbjct: 185 ID 186

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.7 bits (156), Expect = 2e-13
 Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 13/168 (7%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
           K++ LG    GK+ L     +             ++    E+          D  G  Q 
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLAT----LQPTWHPTSEELAIGNIKFTTFDLGGHIQA 57

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKL------ 219
             +   Y     G V +    +   F + +   + +  +   + VP +++ NK+      
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117

Query: 220 ---DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264
              +L S    + T   Q +           S   +    E F  + +
Sbjct: 118 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (137), Expect = 2e-10
 Identities = 30/174 (17%), Positives = 53/174 (30%), Gaps = 19/174 (10%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
           R  K+++LG+G  GKS    Q      +   DPT       E + +      +++D  G 
Sbjct: 1   RLVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGI---HEYDFEIKNVPFKMVDVGGQ 54

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMK----------ELITRVKGSERVPI 212
                       +    + + S +         +            E I   +    V I
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 213 LLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           +L  NK DL   ++           +  G P      +    + E F    R+ 
Sbjct: 115 ILFLNKTDL-LEEKVQVVSIKDYFLEFEGDPHCLRDVQK--FLVECFRGKRRDQ 165

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.1 bits (134), Expect = 3e-10
 Identities = 26/200 (13%), Positives = 51/200 (25%), Gaps = 46/200 (23%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
           RE K+++LG+G  GKS +  Q                    E          ++ D  G 
Sbjct: 1   REVKLLLLGAGESGKSTIVKQMKIIHE-----AGT---GIVETHFTFKDLHFKMFDVGGQ 52

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMK----------ELITRVKGSERVPI 212
                      +     +   +L+++       +            + I   K      I
Sbjct: 53  RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 112

Query: 213 LLVANKLDLASHQREVPTLDGQALAQSWG--------------------------CPFIE 246
           +L  NK      ++   +       +  G                               
Sbjct: 113 ILFLNK-KDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHF 171

Query: 247 ASAKNKTNVNEMFAEIVREM 266
             A +  NV  +F + V ++
Sbjct: 172 TCATDTKNVQFVF-DAVTDV 190

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.0 bits (129), Expect = 3e-09
 Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 17/168 (10%)

Query: 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163
             ++++LG+G  GKS +  Q            T    +  + +VDK      + D  G  
Sbjct: 6   THRLLLLGAGESGKSTIVKQMRIL----HVVLTS-GIFETKFQVDK--VNFHMFDVGGQR 58

Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHT----------FQDIKQMKELITRVKGSERVPIL 213
                      +    + V + ++++            Q+   + + I   +    + ++
Sbjct: 59  DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 118

Query: 214 LVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261
           L  NK DL + +        +     +        A  +   +     
Sbjct: 119 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTR 166

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.3 bits (124), Expect = 7e-09
 Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 3/121 (2%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
            V+ +G    GK+ L V+ ++G + +      +     ++  ++   +  I         
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61

Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQM---KELITRVKGSERVPILLVANKLDLA 222
             + D +  + +  V V                  + LI  +       +L+  NK D+A
Sbjct: 62  FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121

Query: 223 S 223
            
Sbjct: 122 M 122

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 7e-08
 Identities = 31/199 (15%), Positives = 55/199 (27%), Gaps = 41/199 (20%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
           RE K+++LG+G  GKS    Q           PT       E   D    +  ++D  G 
Sbjct: 1   RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTT---GIIEYPFDLQSVIFRMVDVGGQ 55

Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKEL----------ITRVKGSERVPI 212
                      +N    + + +L+ +         +            I      +   +
Sbjct: 56  RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 115

Query: 213 LLVAN-------KLDLASHQREVPTLDGQALAQSWGCPFI------------------EA 247
           +L  N       K+  +      P  DG          FI                    
Sbjct: 116 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFT 175

Query: 248 SAKNKTNVNEMFAEIVREM 266
            A +  N+  +F   V++ 
Sbjct: 176 CATDTENIRFVF-AAVKDT 193

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 25/169 (14%), Positives = 48/169 (28%), Gaps = 16/169 (9%)

Query: 105 FKVVVLGSGGVGKSAL-------TVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEIL 157
            KVV+ G    GKS+L           V+       D   E  +   + +          
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 158 DTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVAN 217
            +   E+    R          V+           D  ++         ++     +V N
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPIT-VVRN 120

Query: 218 KLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
           K D+              +++  G   I  SA+    V+ +   + + M
Sbjct: 121 KADITGET--------LGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 29/186 (15%), Positives = 55/186 (29%), Gaps = 24/186 (12%)

Query: 107 VVVLGSGGVGKSAL-----------------TVQFVSGCFMEKYDPTIEDFYRKEIEVDK 149
           ++  G   VGKS L                 T + +   +       +  F        +
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62

Query: 150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSER 209
               ++       E  A   D+ +    G      +       +I    E    ++  + 
Sbjct: 63  VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD- 121

Query: 210 VPILLVANKLDLASHQREVPTLDGQALAQSWG---CPFIEASAKNKTNVNEMFAEIVREM 266
           +P ++  NKLD   + +EV     +            FI  SAK   N+  +   I   +
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 181

Query: 267 NFNPEK 272
               E+
Sbjct: 182 ---RER 184

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (94), Expect = 8e-05
 Identities = 19/184 (10%), Positives = 44/184 (23%), Gaps = 18/184 (9%)

Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAG 161
            +  +++ G    GK++L     +        PT+         + D +   L       
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTD----SVRPTVVSQEPLSAADYDGSGVTLVDFPGHV 57

Query: 162 TEQFASMRDL---YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRV---KGSERVPILLV 215
             ++     L            +V S  +        +    I  +        + IL+ 
Sbjct: 58  KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 117

Query: 216 ANKLDLA-SHQREV------PTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNF 268
            NK +L  +             +      +      +E     +         +     F
Sbjct: 118 CNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGF 177

Query: 269 NPEK 272
               
Sbjct: 178 KFAN 181

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 7e-04
 Identities = 23/167 (13%), Positives = 52/167 (31%), Gaps = 9/167 (5%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT-- 162
            +V   G    GKS+      +   + +   T        +        L  L   G   
Sbjct: 17  IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76

Query: 163 -------EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLV 215
                  +   ++ +   K      +V  +   H  +D+ Q             + +L  
Sbjct: 77  VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 136

Query: 216 ANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262
           A+KL   + + ++  +    LA +        S+  K  V+++  ++
Sbjct: 137 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 183

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 11/171 (6%)

Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164
            KV ++G   VGKS L    ++                 + EV         +DTAG  +
Sbjct: 9   IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68

Query: 165 FASMRDLYIKNGQGF-----------VVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL 213
            + +    ++    +           VV+         +  ++M  L+ R   +  V   
Sbjct: 69  KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFN 128

Query: 214 LVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264
                +       E   L  + L      P I  SA    N++ M   +  
Sbjct: 129 KWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNL 179

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 19/126 (15%), Positives = 31/126 (24%), Gaps = 17/126 (13%)

Query: 104 EFKVVVLGSGGVGKSAL------TVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEIL 157
              V V G  G GKS+             G           + +  +         +   
Sbjct: 56  VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPN---VVFW 112

Query: 158 DTAGTEQFASMRDLYIKNGQGF---VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILL 214
           D  G        D Y++  + +     +          DI   K +    K         
Sbjct: 113 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKK-----EFYF 167

Query: 215 VANKLD 220
           V  K+D
Sbjct: 168 VRTKVD 173

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 20/170 (11%), Positives = 49/170 (28%), Gaps = 8/170 (4%)

Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAP------CVLEILDT 159
           ++ + G   VGKS+     ++   + +              +                  
Sbjct: 25  EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84

Query: 160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKL 219
           + +E+ A  R +         +   +               +        +P++++A K 
Sbjct: 85  SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144

Query: 220 DLAS--HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
           D        +   +  Q L        I  S++ K   +E +  I + +N
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 20/169 (11%)

Query: 106 KVVVLGSGGVGKSAL-------TVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILD 158
           ++V++G   VGKS L           V+       D   E+   + I            +
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 159 TAGT-EQFASMRDL-YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVA 216
           T    E+    R L  I+     + V   ++    +D K ++ +  +           V 
Sbjct: 62  TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLV-------VI 114

Query: 217 NKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
           NK+D+     E    +            ++ SA     + ++   I RE
Sbjct: 115 NKVDVVEKINEEEIKN----KLGTDRHMVKISALKGEGLEKLEESIYRE 159

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 7/138 (5%)

Query: 130 MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH 189
            E Y            +  K    +  +D  G E   +          G ++V +     
Sbjct: 64  PEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPF 123

Query: 190 TFQDIKQMKELITRVKGSERVPILLVANKLDLAS--HQREVPTLDGQALAQSWG--CPFI 245
                ++    +  +       +++V NK+D+ S            Q    +W    P I
Sbjct: 124 PQPQTREHFVALGIIG---VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPII 180

Query: 246 EASAKNKTNVNEMFAEIV 263
             SA +K N++ +   I 
Sbjct: 181 PVSALHKINIDSLIEGIE 198

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.97
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.97
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.97
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.97
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.97
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.96
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.96
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.96
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.95
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.95
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.91
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.91
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.9
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.89
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.89
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.89
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.88
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.87
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.87
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.87
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.87
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.86
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.86
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.85
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.85
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.84
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.84
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.84
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.83
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.83
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.8
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.8
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.8
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.77
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.76
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.76
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.73
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.71
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.7
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.69
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.68
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.66
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.65
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.55
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.38
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.37
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.33
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.18
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.16
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.07
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.02
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.93
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.81
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.74
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.19
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.99
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.95
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.89
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.84
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.83
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.78
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.72
d1okkd2	207	GTPase domain of the signal recognition particle r	97.67
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.57
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.56
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.55
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.25
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.92
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.92
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.78
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.75
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.71
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.64
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.4
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.33
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.31
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.29
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.23
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.23
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.18
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.18
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.16
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.07
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.05
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.04
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.04
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.03
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.02
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.99
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.98
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.96
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.92
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.81
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	95.75
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.71
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.67
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.66
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.64
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.63
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.59
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.58
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.58
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.58
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.57
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	95.54
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.51
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.49
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.48
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.46
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.43
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.43
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.42
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.39
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.35
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.32
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.28
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.27
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.23
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.15
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.14
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.12
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.1
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.08
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.06
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.04
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	94.99
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	94.97
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	94.97
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.9
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	94.85
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	94.83
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	94.74
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.72
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	94.69
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	94.68
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.66
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.49
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	94.24
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.1
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.0
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	93.93
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	93.88
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	93.88
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	93.86
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	93.8
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	93.67
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	93.66
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	93.51
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	93.48
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	93.16
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	93.15
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.06
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	92.95
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	92.89
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.83
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	92.7
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.61
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	92.45
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	91.88
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	91.75
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	91.73
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.71
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	91.66
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	91.57
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	91.55
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	91.53
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	91.45
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	91.22
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	90.97
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.95
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	90.85
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	90.75
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	90.67
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	90.53
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	90.47
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	90.07
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	89.96
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	89.83
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	89.5
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	89.42
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	89.25
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	89.23
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	89.1
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	88.99
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	88.95
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	88.82
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	88.37
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	88.37
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	88.08
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	88.03
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	87.99
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	87.76
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	87.65
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	87.6
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	87.42
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	87.19
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	87.08
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	86.85
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	86.83
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	86.54
d1tuea_	205	Replication protein E1 helicase domain {Human papi	86.15
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	86.1
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	84.45
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	84.22
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	84.11
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	83.31
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	82.42
d1xpua3	289	Transcription termination factor Rho, ATPase domai	82.34
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	81.66
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	81.48
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	80.53

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=234.80  Aligned_cols=171  Identities=43%  Similarity=0.743  Sum_probs=158.3

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      ++.+.+||+++|++|||||||+++|+++.+...+.++..+.....+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            34578999999999999999999999999999999999888889999999999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      ++|||++++.+++.+..|+..+.+.....++|+++|+||+|+. ..+.....+.+.+++..+++|++|||++|.|++++|
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE-SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechh-hccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            9999999999999999999998877667789999999999997 556677888999999999999999999999999999


Q ss_pred             HHHHHHhhcCCC
Q psy10504        260 AEIVREMNFNPE  271 (286)
Q Consensus       260 ~~i~~~i~~~~~  271 (286)
                      +.|++.+.+.++
T Consensus       161 ~~l~~~i~k~~~  172 (173)
T d2fn4a1         161 EQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999876543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=1e-33  Score=228.53  Aligned_cols=165  Identities=43%  Similarity=0.762  Sum_probs=151.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +.+||+++|++|||||||+++++.+.+...+.+|.++.....+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            46899999999999999999999999999999999888888888999999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      ||++++.+++.+..|+..+.+....+++|+++|+||+|+. ..+.++.++++.+++..++++++|||++|.|++++|++|
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             eeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEecccccc-ccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999999887777899999999999997 566788899999999999999999999999999999999


Q ss_pred             HHHhhc
Q psy10504        263 VREMNF  268 (286)
Q Consensus       263 ~~~i~~  268 (286)
                      ++.+.+
T Consensus       162 ~~~i~~  167 (168)
T d1u8za_         162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            998865

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-33  Score=225.48  Aligned_cols=165  Identities=46%  Similarity=0.834  Sum_probs=153.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +++||+++|++++|||||++++.++.+...+.+|.++.....+..++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            46999999999999999999999999999999998888888889999999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCC-cHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT-NVNEMFAE  261 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~-gv~~l~~~  261 (286)
                      ||++|+.+++.+..|+..+.+.....++|+++++||+|+. ..+.++.++++.+++.++++|++|||+++. ||+++|+.
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~-~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~  161 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM-HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD  161 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS-TTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred             cccccchhhhccchhhHHHHhhccccCccEEEEecccchh-hhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHH
Confidence            9999999999999999999887666789999999999998 566788889999999999999999999886 99999999


Q ss_pred             HHHHhhc
Q psy10504        262 IVREMNF  268 (286)
Q Consensus       262 i~~~i~~  268 (286)
                      |++.+.+
T Consensus       162 l~~~i~~  168 (169)
T d1x1ra1         162 LVRVIRQ  168 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=227.12  Aligned_cols=164  Identities=37%  Similarity=0.664  Sum_probs=153.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +.+||+++|++|||||||+++|+++.+...+.+|.+......+.+++..+.+.+||++|++++..++..+++.+|++++|
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV   82 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhh
Confidence            56899999999999999999999999999999998877778889999999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      ||++++.+++.+..|+..+.+....+++|+++|+||+|+. ..+.++.++++.+++.++++|++|||++|.|++++|+.|
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~-~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~l  161 (167)
T d1xtqa1          83 YSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH-MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhhhhcccccccceeeeccccccc-cccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999999887777789999999999997 566788889999999999999999999999999999999


Q ss_pred             HHHhh
Q psy10504        263 VREMN  267 (286)
Q Consensus       263 ~~~i~  267 (286)
                      ++.++
T Consensus       162 i~~~~  166 (167)
T d1xtqa1         162 ILEAE  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=227.37  Aligned_cols=165  Identities=75%  Similarity=1.190  Sum_probs=154.2

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      |+.+||+++|++|||||||+++++++.+...+.+++++........++..+.+.+||++|++.+..++..+++++|++++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            57899999999999999999999999999999999999888889999999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++++.+++++..|+..+......+++|+++|+||+|+. ..+.....+.+.+++..++++++|||++|.|++++|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE-SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchh-hcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence            99999999999999999998887667789999999999997 55667788899999999999999999999999999999


Q ss_pred             HHHHhh
Q psy10504        262 IVREMN  267 (286)
Q Consensus       262 i~~~i~  267 (286)
                      |++.+.
T Consensus       160 i~~~i~  165 (167)
T d1kaoa_         160 IVRQMN  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            998763

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-34  Score=229.20  Aligned_cols=163  Identities=32%  Similarity=0.492  Sum_probs=134.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      +||+++|++|||||||++++.+..+.. +.++..+.....+.+++..+.+.+||+||++++..++..+++.+|++++|||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d   80 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   80 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC-cCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceecc
Confidence            799999999999999999999876544 4455566667788899999999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504        185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR  264 (286)
Q Consensus       185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~  264 (286)
                      ++++.+++++..|+..+.......++|+++|+||+|+. ..+.++..+.+.+++.++++|++|||++|.|++++|++|++
T Consensus        81 ~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          81 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             ccccccccccccccchhhcccccccceEEEeecccchh-hhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            99999999999999999887766789999999999997 56677888999999999999999999999999999999999


Q ss_pred             HhhcC
Q psy10504        265 EMNFN  269 (286)
Q Consensus       265 ~i~~~  269 (286)
                      .+..+
T Consensus       160 ~i~~~  164 (168)
T d2gjsa1         160 QIRLR  164 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-33  Score=225.51  Aligned_cols=165  Identities=64%  Similarity=1.055  Sum_probs=152.0

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      |+.+||+++|++|||||||++++..+.+...+.++.+......+..++..+.+.+||++|++.+..++..+++++|++++
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            57899999999999999999999999999999999988888888899999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc-CCCEEEEeCCCCCcHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~gv~~l~~  260 (286)
                      |||++++.+++++..|+..+.+....+++|+++|+||+|+. ..+....++...+++.. ++++++|||++|.|++++|+
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE-DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcc-cccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            99999999999999999999887777789999999999997 55666777778887774 68999999999999999999


Q ss_pred             HHHHHhh
Q psy10504        261 EIVREMN  267 (286)
Q Consensus       261 ~i~~~i~  267 (286)
                      +|++.+.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9999875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-33  Score=226.55  Aligned_cols=166  Identities=43%  Similarity=0.790  Sum_probs=150.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +.+||+++|++|||||||+++|+++.+...+.+|+++........++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            36899999999999999999999999999999999988888889999999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      ||++++++++.+..|+..+.... ..+++|+++|+||+|+. ..+.++..+.+.+++.+++++++|||++|.|++++|+.
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~-~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES-PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeeccccc-ccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            99999999999999998887654 34689999999999986 56678888999999999999999999999999999999


Q ss_pred             HHHHhhcC
Q psy10504        262 IVREMNFN  269 (286)
Q Consensus       262 i~~~i~~~  269 (286)
                      |++.+.++
T Consensus       160 l~~~~~~~  167 (171)
T d2erxa1         160 LLNLEKRR  167 (171)
T ss_dssp             HHHTCCSS
T ss_pred             HHHHHHHh
Confidence            99877543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-32  Score=227.07  Aligned_cols=179  Identities=27%  Similarity=0.493  Sum_probs=155.2

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      |+.+||+++|++|||||||+++|..+.+...+.+|+++........++..+.+.+||++|+++|..++..+++.+|++++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            46799999999999999999999999999999999998888888999999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC-----------CCCCCCHHHHHHHHHhcC-CCEEEEeC
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS-----------HQREVPTLDGQALAQSWG-CPFIEASA  249 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-----------~~~~~~~~~~~~~~~~~~-~~~~~vSa  249 (286)
                      |||++++++++++..|+....... .++.|+++|+||+|+.+           ..+.+..++++.++..++ ++|++|||
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  159 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA  159 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeC
Confidence            999999999999987655554433 45899999999999863           234578888899998865 89999999


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCCCcCCCceecCccccC
Q psy10504        250 KNKTNVNEMFAEIVREMNFNPEKDNASFCWCSSCSIL  286 (286)
Q Consensus       250 ~~~~gv~~l~~~i~~~i~~~~~~~~~~~~~~~~c~~~  286 (286)
                      ++|.||+++|+.+++.+.+.+.+++     ..+|.+|
T Consensus       160 k~~~~V~e~f~~l~~~~~~~~~~k~-----~~~C~i~  191 (191)
T d2ngra_         160 LTQKGLKNVFDEAILAALEPPEPKK-----SRRCVLL  191 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHTSCCSTTC-----CCSCCCC
T ss_pred             CCCcCHHHHHHHHHHHHhcCcCCCC-----CCCCeEC
Confidence            9999999999999998877665443     2346665

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-33  Score=224.16  Aligned_cols=165  Identities=45%  Similarity=0.810  Sum_probs=150.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      ..+||+++|++|||||||++++..+.+...+.+|.++.....+.+++..+.+.+||++|++++...+..+++.+|++++|
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      ||.+++.+++.+..|+..+.........|+++|+||+|+. ..+.+...+.+.+++.++++|++|||++|.|++++|+.|
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD-HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCT-TSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchh-hhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999988877666789999999999997 567788889999999999999999999999999999999


Q ss_pred             HHHhhc
Q psy10504        263 VREMNF  268 (286)
Q Consensus       263 ~~~i~~  268 (286)
                      ++.+.+
T Consensus       163 ~~~i~k  168 (171)
T d2erya1         163 VRVIRK  168 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-32  Score=221.52  Aligned_cols=165  Identities=50%  Similarity=0.908  Sum_probs=154.2

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ++++||+++|+++||||||+++|+++.+...+.++.+......+...+..+.+.+||++|++.+...+..+++.++++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            46799999999999999999999999999999999988888888899999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |+|++++.+++.+..|+..+.+....+++|+++|+||+|+.  .+....++++.+++..++++++|||++|+|++++|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  158 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA--ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCS--CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccc--cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHH
Confidence            99999999999999999999988777889999999999986  4566788899999999999999999999999999999


Q ss_pred             HHHHhhc
Q psy10504        262 IVREMNF  268 (286)
Q Consensus       262 i~~~i~~  268 (286)
                      |++.+.+
T Consensus       159 i~~~i~~  165 (166)
T d1ctqa_         159 LVREIRQ  165 (166)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998875

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.1e-32  Score=220.79  Aligned_cols=164  Identities=30%  Similarity=0.544  Sum_probs=148.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .-+||+++|++|||||||+++|.++.+...+.++.+ +.....+...+..+.+++|||||++++..++..+++.+|++|+
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            358999999999999999999999998888877776 6666778888888999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++++.++..+..|+..+... ..++.|+++|+||+|+. ..+.++..+.+.+++..++++++|||++|.|++++|++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~-~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  161 (169)
T d3raba_          84 MYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDME-DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccc-cccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            99999999999999988877664 45689999999999987 55677888899999999999999999999999999999


Q ss_pred             HHHHhhc
Q psy10504        262 IVREMNF  268 (286)
Q Consensus       262 i~~~i~~  268 (286)
                      |++.+.+
T Consensus       162 l~~~i~e  168 (169)
T d3raba_         162 LVDVICE  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9998865

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-32  Score=223.49  Aligned_cols=168  Identities=29%  Similarity=0.490  Sum_probs=149.3

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      +....+||+++|++|||||||+++|+.+.+...+.+|+++.....+...+..+.+.+||++|++.|..++..+++.+|++
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~   84 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   84 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhccccccee
Confidence            34467999999999999999999999999999999999988888888999999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC-----------CCCCCCHHHHHHHHHhcC-CCEEEE
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS-----------HQREVPTLDGQALAQSWG-CPFIEA  247 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-----------~~~~~~~~~~~~~~~~~~-~~~~~v  247 (286)
                      ++|||++++++++++..|+....+.. .+++|+++|+||+|+.+           ..+.++.++.+.+++.++ ++|++|
T Consensus        85 ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~  163 (185)
T d2atxa1          85 LICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  163 (185)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             eeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEe
Confidence            99999999999998876655555433 45899999999999874           235678888999999888 799999


Q ss_pred             eCCCCCcHHHHHHHHHHHhhc
Q psy10504        248 SAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       248 Sa~~~~gv~~l~~~i~~~i~~  268 (286)
                      ||++|.|++++|+.+++.+..
T Consensus       164 SAk~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         164 SALTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCCCcCHHHHHHHHHHHHcC
Confidence            999999999999999998743

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-32  Score=220.34  Aligned_cols=162  Identities=31%  Similarity=0.530  Sum_probs=148.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      .+||+++|++|||||||+++|.++.+...+.+|++ +........++..+.+.+|||+|++++..++..+++.++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            47999999999999999999999999998888886 66777888899999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      ||++++.+++++..|+..+.+..  +++|+++|+||+|+. ..+.+...+.+.+++.+++++++|||++|.|++++|++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  158 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLL-DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  158 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccC--CCceEEEeeccCCcc-cceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHH
Confidence            99999999999999999987754  479999999999997 566788888999999999999999999999999999999


Q ss_pred             HHHhhc
Q psy10504        263 VREMNF  268 (286)
Q Consensus       263 ~~~i~~  268 (286)
                      ++.+.+
T Consensus       159 ~~~~lq  164 (164)
T d1z2aa1         159 AEKHLQ  164 (164)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            998753

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.1e-32  Score=218.65  Aligned_cols=164  Identities=34%  Similarity=0.556  Sum_probs=148.8

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceE-EEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFY-RKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ++.+||+++|++|||||||+++|..+.+...+.+|..... ......++....+.+||++|++++..++..+++.+++++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            5789999999999999999999999999998888876444 456667788888999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|||++++++++.+..|+..+... ..++.|+++|+||+|+. ..+.+...+.+.+++.++++|++|||++|.||+++|+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~  159 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLT-DVREVMERDAKDYADSIHAIFVETSAKNAININELFI  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhc-cccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHH
Confidence            999999999999999999887764 45689999999999997 5677888899999999999999999999999999999


Q ss_pred             HHHHHhh
Q psy10504        261 EIVREMN  267 (286)
Q Consensus       261 ~i~~~i~  267 (286)
                      +|++.++
T Consensus       160 ~l~~~i~  166 (167)
T d1z0ja1         160 EISRRIP  166 (167)
T ss_dssp             HHHHHCC
T ss_pred             HHHHhCC
Confidence            9999885

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-32  Score=220.11  Aligned_cols=164  Identities=30%  Similarity=0.453  Sum_probs=146.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +.||+++|++|+|||||++++..+.+...+.+|.++........++..+.+.+||++|++.|..++..+++++|++++||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            47999999999999999999999999999999998888888899999999999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcC-CCEEEEeCCC
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWG-CPFIEASAKN  251 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~vSa~~  251 (286)
                      |++++.+++++..|+....... .+++|+++|+||+|+.+.           .+.++..+.+.+++.++ .+|++|||++
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             ccchhHHHHHHHHHHHHHHHHh-CCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            9999999999887666555533 468999999999999732           24577888999999988 5899999999


Q ss_pred             CCcHHHHHHHHHHHhhc
Q psy10504        252 KTNVNEMFAEIVREMNF  268 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i~~  268 (286)
                      |.|++++|+.+++.+.+
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999988753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-32  Score=220.62  Aligned_cols=163  Identities=39%  Similarity=0.701  Sum_probs=148.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      .+||+++|++|||||||+++++.+.+...+.||++.........++..+.+.+||++|++.+. .+..+++.++++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            589999999999999999999999999999999887777888889999999999999998875 5667889999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCc-HHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTN-VNEMFAEI  262 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g-v~~l~~~i  262 (286)
                      |++++.+++.+..|+.........++.|+++|+||+|+. ..+.++.++++.+++.++++|++|||++|.| |+++|+.|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~-~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD-HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             ccCCccchhhhhhhcccccccccccCcceeeeccchhhh-hhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            999999999999988877766667789999999999997 5567888999999999999999999999985 99999999


Q ss_pred             HHHhhc
Q psy10504        263 VREMNF  268 (286)
Q Consensus       263 ~~~i~~  268 (286)
                      ++.+.+
T Consensus       160 ~~~i~~  165 (168)
T d2atva1         160 CREVRR  165 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-32  Score=218.86  Aligned_cols=163  Identities=31%  Similarity=0.541  Sum_probs=147.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      .+||+++|++|||||||++++..+.+...+.++++ +.....+.+++..+.+.+|||||+++|..++..++++++++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            58999999999999999999999999887777665 66677888999999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      +|++++.+++.+..|+..+... ...+.|+++|+||+|+. ..+.+...+.+.+++..++++++|||++|.||+++|++|
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~-~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l  162 (171)
T d2ew1a1          85 YDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLA-ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL  162 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             eecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccc-cccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHH
Confidence            9999999999999999988774 34578999999999987 556677888999999999999999999999999999999


Q ss_pred             HHHhhc
Q psy10504        263 VREMNF  268 (286)
Q Consensus       263 ~~~i~~  268 (286)
                      ++.+..
T Consensus       163 ~~~l~~  168 (171)
T d2ew1a1         163 ACRLIS  168 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987743

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-32  Score=218.05  Aligned_cols=164  Identities=29%  Similarity=0.547  Sum_probs=141.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+||+++|++|||||||++++.++.+...+.+|.+ +........++..+.+.+||++|++++..++..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            358999999999999999999999999999988877 4555577888888999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++++++++.+..|+..+.... ....|+++|+||+|+. ..+.++..+++.+++.+++++++|||++|.|++++|++
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~-~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~  159 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLE-KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  159 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhccccc-ccccceeeeccccccc-cccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHH
Confidence            999999999999999998776543 3478999999999997 56778899999999999999999999999999999999


Q ss_pred             HHHHhhc
Q psy10504        262 IVREMNF  268 (286)
Q Consensus       262 i~~~i~~  268 (286)
                      |++.+.+
T Consensus       160 l~~~i~~  166 (167)
T d1z08a1         160 LCKRMIE  166 (167)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9998864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-32  Score=216.18  Aligned_cols=161  Identities=34%  Similarity=0.512  Sum_probs=145.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      -+||+++|+++||||||++++.++.+...+.++.. +........++..+.+.+||+||++++..++..+++.+|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            48999999999999999999999998888776555 56667788999999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      ||+++..+++.+..|+..+.+. ..+..|+++++||+|+. ..+....++++.+++..++++++|||++|.|++++|++|
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i  161 (166)
T d1z0fa1          84 YDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLE-AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA  161 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             eccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccch-hhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999888764 45688999999999987 556677788999999999999999999999999999999


Q ss_pred             HHHh
Q psy10504        263 VREM  266 (286)
Q Consensus       263 ~~~i  266 (286)
                      ++.+
T Consensus       162 ~~~i  165 (166)
T d1z0fa1         162 AKKI  165 (166)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.1e-32  Score=216.77  Aligned_cols=162  Identities=35%  Similarity=0.551  Sum_probs=146.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +||+++|++|||||||+++|.++.+...+.++++ .........++..+.+.+||++|++++...+..+++.+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            5899999999999999999999999988888876 455566677788899999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV  263 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~  263 (286)
                      |++++.+++.+..|+..+.... .++.|+++|+||+|+. ..+.....+...+++.+++++++|||++|.|++++|++|+
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~  158 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLA-DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  158 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhc-CCCceEEEEecccchh-hhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHH
Confidence            9999999999999999887754 3589999999999997 5566777889999999999999999999999999999999


Q ss_pred             HHhhc
Q psy10504        264 REMNF  268 (286)
Q Consensus       264 ~~i~~  268 (286)
                      +.++.
T Consensus       159 ~~l~g  163 (164)
T d1yzqa1         159 AALPG  163 (164)
T ss_dssp             HHSCC
T ss_pred             HhhCC
Confidence            98874

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.4e-31  Score=218.65  Aligned_cols=168  Identities=29%  Similarity=0.497  Sum_probs=148.5

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ++.+||+++|++|||||||+++|+.+.+...+.+|+++.....+..++..+.+.+||++|++.+..++..+++.+|++++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence            57899999999999999999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcC-CCEEEEeC
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWG-CPFIEASA  249 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~vSa  249 (286)
                      |||++++.+++++..|+....+.. .+++|+++|+||+|+.+.           .......+...+++.++ ++|++|||
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            999999999999987555444433 458999999999998522           23456677888888887 79999999


Q ss_pred             CCCCcHHHHHHHHHHHhhcCC
Q psy10504        250 KNKTNVNEMFAEIVREMNFNP  270 (286)
Q Consensus       250 ~~~~gv~~l~~~i~~~i~~~~  270 (286)
                      ++|.||+++|+.|++.+...|
T Consensus       162 k~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCcCHHHHHHHHHHHHcCCC
Confidence            999999999999999987654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.1e-31  Score=215.02  Aligned_cols=165  Identities=36%  Similarity=0.547  Sum_probs=149.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccce-EEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDF-YRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+||+++|++|||||||+++|..+.+...+.++.+.. ........+..+.+.+||++|++++..++..++++++++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            45899999999999999999999999988888877644 44667788888999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |+|.++..+++.+..|+..+.+. ..+++|+++|+||+|+. ..+.++.++.+.+++..+++|++|||++|.|++++|++
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~-~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~  162 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLA-NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhc-cCCCceEEeeccccccc-ccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHH
Confidence            99999999999999998888763 45689999999999997 56778889999999999999999999999999999999


Q ss_pred             HHHHhhcC
Q psy10504        262 IVREMNFN  269 (286)
Q Consensus       262 i~~~i~~~  269 (286)
                      |++.++++
T Consensus       163 l~~~i~~n  170 (170)
T d1r2qa_         163 IAKKLPKN  170 (170)
T ss_dssp             HHHTSCCC
T ss_pred             HHHHHhhC
Confidence            99988753

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.3e-32  Score=219.32  Aligned_cols=163  Identities=26%  Similarity=0.495  Sum_probs=139.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      .+||+++|++|||||||+++|..+.+...+.+|++ ++....+..++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999999999888886 56667788889899999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      ||++++.+++.+..|+..+.+..  +++|+++|+||+|+.. .+..  .+....+...+++|++|||++|.|++++|++|
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~-~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  157 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKD-RKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  157 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSC-SCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhh-hhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999887754  4899999999999973 3322  23456777888999999999999999999999


Q ss_pred             HHHhhcCCC
Q psy10504        263 VREMNFNPE  271 (286)
Q Consensus       263 ~~~i~~~~~  271 (286)
                      ++.+..++.
T Consensus       158 ~~~l~~~~~  166 (170)
T d1i2ma_         158 ARKLIGDPN  166 (170)
T ss_dssp             HHHHHTCTT
T ss_pred             HHHHccCCC
Confidence            999976554

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=9.7e-32  Score=217.71  Aligned_cols=165  Identities=32%  Similarity=0.568  Sum_probs=119.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      +-+||+++|+++||||||+++|.++.+...+.++.+ +.....+..++..+.+.+|||||++.|..++..+++.+|++|+
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~   84 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   84 (173)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence            458999999999999999999999988888777776 5666788899999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++++.+++.+..|+..+... ..++.|+++|+||.|+. ..+.....+....++..++++++|||++|+|++++|++
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~  162 (173)
T d2fu5c1          85 VYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVN-DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  162 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CC-SCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEECCChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccch-hhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999888664 45689999999999997 55566677788889999999999999999999999999


Q ss_pred             HHHHhhcC
Q psy10504        262 IVREMNFN  269 (286)
Q Consensus       262 i~~~i~~~  269 (286)
                      |++.+.++
T Consensus       163 l~~~i~~k  170 (173)
T d2fu5c1         163 LARDIKAK  170 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.5e-31  Score=213.76  Aligned_cols=164  Identities=35%  Similarity=0.540  Sum_probs=143.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      -+||+++|++|||||||++++.++.+...+.++.. ..........+..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   82 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence            48999999999999999999999998877766554 55566677788888999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      ||++++.+++.+..|+..+... ..+++|+++|+||+|+. ..+.....+...+++..++++++|||++|.|++++|+++
T Consensus        83 ~d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~-~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i  160 (173)
T d2a5ja1          83 YDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLE-SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT  160 (173)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EeecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchh-hhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999888774 44689999999999987 556677888999999999999999999999999999999


Q ss_pred             HHHhhcC
Q psy10504        263 VREMNFN  269 (286)
Q Consensus       263 ~~~i~~~  269 (286)
                      ++.+.++
T Consensus       161 ~~~i~~~  167 (173)
T d2a5ja1         161 AKEIYRK  167 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988653

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.5e-31  Score=213.80  Aligned_cols=164  Identities=33%  Similarity=0.447  Sum_probs=147.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccce-EEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDF-YRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      .+||+++|++|||||||++++..+.+...+.++.... ....+..++....+.+|||||++++..++..+++.++++++|
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   84 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence            4899999999999999999999999988888876644 445677788888999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      +|.+++++++.+..|+..+.... .+++|+++|+||+|+. ............+++..++++++|||++|.|++++|+++
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l  162 (174)
T d2bmea1          85 YDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLD-ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC  162 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EecccchhHHHHhhhhccccccc-CCceEEEEEEeccccc-chhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHH
Confidence            99999999999999999988754 4689999999999987 566677788889999999999999999999999999999


Q ss_pred             HHHhhcC
Q psy10504        263 VREMNFN  269 (286)
Q Consensus       263 ~~~i~~~  269 (286)
                      ++.+.++
T Consensus       163 ~~~i~~~  169 (174)
T d2bmea1         163 ARKILNK  169 (174)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.4e-31  Score=213.24  Aligned_cols=166  Identities=34%  Similarity=0.529  Sum_probs=144.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .-+||+++|++|||||||++++.++.+...+.++.+ +.....+..++..+.+.+||++|+++|..++..+++.++++++
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~   82 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   82 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence            458999999999999999999999998877766554 5556777889999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||.+++.+++.+..|+..+.... .+++|+++|+||+|+. +.+..............+.++++|||++|.|++++|++
T Consensus        83 v~d~~~~~S~~~~~~~~~~i~~~~-~~~~piilvgnK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~  160 (175)
T d2f9la1          83 VYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  160 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCcccchhHHHHHHHHHHhc-CCCCcEEEEEeeeccc-ccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHH
Confidence            999999999999999999887754 4689999999999997 44556677778888889999999999999999999999


Q ss_pred             HHHHhhcCC
Q psy10504        262 IVREMNFNP  270 (286)
Q Consensus       262 i~~~i~~~~  270 (286)
                      +++.+.+..
T Consensus       161 l~~~i~~~~  169 (175)
T d2f9la1         161 ILTEIYRIV  169 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999875433

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.2e-30  Score=209.03  Aligned_cols=164  Identities=35%  Similarity=0.612  Sum_probs=137.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCC-c-cceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPT-I-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t-~-~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ..+||+++|+++||||||++++..+.+...+.++ + .+.....+..++..+.+++|||||++++..++..+++++|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            4689999999999999999999999876554433 3 3555667888999999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|||++++.+++.+..|+..+.... ....|+++|+||+|+. ....+...++..+++..++++++|||++|.|++++|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~-~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~  162 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSA-HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  162 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTT-SCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEecCCcccchhhhhhhhhhhhhcc-CCCceEEEEEeeechh-hcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            9999999999999999988877754 4578999999999997 6667888889999999999999999999999999999


Q ss_pred             HHHHHhhc
Q psy10504        261 EIVREMNF  268 (286)
Q Consensus       261 ~i~~~i~~  268 (286)
                      +|++.+++
T Consensus       163 ~l~~~i~k  170 (170)
T d2g6ba1         163 AIAKELKR  170 (170)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHcCC
Confidence            99998753

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.6e-30  Score=214.46  Aligned_cols=165  Identities=33%  Similarity=0.522  Sum_probs=148.5

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccce-EEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDF-YRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .-+||+|+|++|||||||+++|..+.+...+.+|.+.. ....+.+++..+.+.+|||||+++|..++..++++++++|+
T Consensus         5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~   84 (194)
T d2bcgy1           5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII   84 (194)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            45899999999999999999999999998888887654 44578889999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE  261 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~  261 (286)
                      |||++++.+++.+..|+..+.+. ...++|+++|+||+|+. ..+....++....++..++++++|||++|.|++++|++
T Consensus        85 v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~  162 (194)
T d2bcgy1          85 VYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLK-DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT  162 (194)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccc-cccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHH
Confidence            99999999999999988888764 45689999999999998 56677888889999999999999999999999999999


Q ss_pred             HHHHhhcC
Q psy10504        262 IVREMNFN  269 (286)
Q Consensus       262 i~~~i~~~  269 (286)
                      |++.+.+.
T Consensus       163 l~~~i~~~  170 (194)
T d2bcgy1         163 MARQIKES  170 (194)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-30  Score=212.22  Aligned_cols=168  Identities=33%  Similarity=0.506  Sum_probs=151.3

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccc-eEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV  180 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi  180 (286)
                      ..++||+++|++|||||||+++|.++.+...+.++.+. .....+.+++..+.+.+|||||++++..++..+++.+|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            35699999999999999999999999998887777654 34566788999999999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|||++++.+++.+..|+..+.+.......|+++++||.|..  .+.+...+.+.+++..++++++|||++|+|++++|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~--~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~  162 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE  162 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc--cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999988776556678999999999975  567788889999999999999999999999999999


Q ss_pred             HHHHHhhcCCC
Q psy10504        261 EIVREMNFNPE  271 (286)
Q Consensus       261 ~i~~~i~~~~~  271 (286)
                      ++++.+.+.|.
T Consensus       163 ~l~~~l~~~p~  173 (177)
T d1x3sa1         163 ELVEKIIQTPG  173 (177)
T ss_dssp             HHHHHHHTSGG
T ss_pred             HHHHHHccCcc
Confidence            99999988763

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.2e-30  Score=211.31  Aligned_cols=166  Identities=31%  Similarity=0.514  Sum_probs=129.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEE-EEE-ECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRK-EIE-VDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~-~~~-~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      -+||+++|++|||||||+++|.++.+...+.++.+..... ... .+...+.+.+|||+|++++..++..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            4899999999999999999999999988887776543333 332 33445668999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHh---CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVK---GSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNE  257 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~~  257 (286)
                      |||++++.+++.+..|+..+....   ..+++|+++|+||+|+.+..+.++..+.+.+++.++ +++++|||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            999999999999999998887654   235789999999999985556678888999998886 8999999999999999


Q ss_pred             HHHHHHHHhhcC
Q psy10504        258 MFAEIVREMNFN  269 (286)
Q Consensus       258 l~~~i~~~i~~~  269 (286)
                      +|++|++.+.++
T Consensus       162 ~f~~l~~~~l~~  173 (175)
T d1ky3a_         162 AFEEIARSALQQ  173 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999987654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.8e-30  Score=209.45  Aligned_cols=165  Identities=35%  Similarity=0.582  Sum_probs=148.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      ..+||+++|++|||||||+++|..+.+...+.+|.+ ++....+..++..+.+.+||++|++++..++..++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            368999999999999999999999999999988887 4556788899999999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC--CCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS--HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      |||++++.+++++..|+..+... .....|+++++||+|+.+  ..+.+...+.+.+++..+++|++|||++|.|++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F  160 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF  160 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccc-cccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHH
Confidence            99999999999999998877664 445789999999999863  346788889999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q psy10504        260 AEIVREMNF  268 (286)
Q Consensus       260 ~~i~~~i~~  268 (286)
                      +.|++.++.
T Consensus       161 ~~i~~~i~~  169 (170)
T d1ek0a_         161 LGIGEKIPL  169 (170)
T ss_dssp             HHHHTTSCC
T ss_pred             HHHHHHhcc
Confidence            999988764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.2e-30  Score=208.15  Aligned_cols=163  Identities=37%  Similarity=0.626  Sum_probs=141.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      -+||+++|++|+|||||+++++.+.+...+.+|++ +.....+..++..+.+.+|||||++.|..++..++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999999888888876 55667888899999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      ||.+++.+++.+..|+..+... .....|++++++|.|+.  .+....++.+.+++.+++++++|||++|+|++++|++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~i~~~~k~d~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l  158 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  158 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCT--TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhcc-ccCcceeeeecchhhhh--hhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHH
Confidence            9999999999999988877775 44578999999999985  55566788999999999999999999999999999999


Q ss_pred             HHHhhcC
Q psy10504        263 VREMNFN  269 (286)
Q Consensus       263 ~~~i~~~  269 (286)
                      ++.+.++
T Consensus       159 ~~~i~~k  165 (166)
T d1g16a_         159 AKLIQEK  165 (166)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-30  Score=210.90  Aligned_cols=164  Identities=32%  Similarity=0.568  Sum_probs=140.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCC--CccCCCccceEEEEEEECCeEEEEEEEeCCC---cccchhhhhhcccCcc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFM--EKYDPTIEDFYRKEIEVDKAPCVLEILDTAG---TEQFASMRDLYIKNGQ  177 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG---~~~~~~~~~~~~~~~d  177 (286)
                      ..+||+++|++|+|||||++++.+..+.  ...+++..+.....+.+++..+.+.+||++|   +++|  ++..+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            3589999999999999999999987654  3334444577788889999999899999764   5544  5778899999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      ++++|||++++.+++++..|+..+......+++|+++|+||+|+. ..+.++..+++.+++..+++|++|||++|.|+++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~-~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~  158 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  158 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEecccccc-ccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHH
Confidence            999999999999999999999988876666789999999999997 5567788889999999999999999999999999


Q ss_pred             HHHHHHHHhhcC
Q psy10504        258 MFAEIVREMNFN  269 (286)
Q Consensus       258 l~~~i~~~i~~~  269 (286)
                      +|++|++.+..+
T Consensus       159 ~f~~l~~~i~~r  170 (172)
T d2g3ya1         159 LFEGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            999999988653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.4e-30  Score=212.08  Aligned_cols=164  Identities=26%  Similarity=0.408  Sum_probs=146.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +.||+++|++|||||||+++++.+.+...+.+|..+........++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            47999999999999999999999999999999998888888899999999999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC-----------CCCCCCHHHHHHHHHhcC-CCEEEEeCCC
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS-----------HQREVPTLDGQALAQSWG-CPFIEASAKN  251 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-----------~~~~~~~~~~~~~~~~~~-~~~~~vSa~~  251 (286)
                      |+++++||+.+..|+....... .++.|+++|+||+|+.+           ..+.++.++...+++..+ ++|++|||++
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             ecccCCCHHHHHHHHHHHHhcc-CCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999988766555433 35899999999999863           235578888999999887 6899999999


Q ss_pred             CC-cHHHHHHHHHHHhhc
Q psy10504        252 KT-NVNEMFAEIVREMNF  268 (286)
Q Consensus       252 ~~-gv~~l~~~i~~~i~~  268 (286)
                      |. |++++|+.+++.+..
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            98 599999999988754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-31  Score=217.66  Aligned_cols=166  Identities=27%  Similarity=0.457  Sum_probs=143.5

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccce-EEEEEEEC----------CeEEEEEEEeCCCcccchhhhhh
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDF-YRKEIEVD----------KAPCVLEILDTAGTEQFASMRDL  171 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~----------~~~~~l~l~DtpG~~~~~~~~~~  171 (286)
                      .-+||+++|++|||||||+++|.++.+...+.++.+.. ....+..+          ...+.+.+|||+|+++|..++..
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            35899999999999999999999999888777665532 23333332          23467999999999999999999


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504        172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN  251 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~  251 (286)
                      +++++|++++|||++++.+++.+..|+..+......++.|+++|+||+|+. ..+.+...++..+++.+++++++|||++
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~-~~~~v~~~e~~~~~~~~~~~~~e~Sak~  162 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP-DQREVNERQARELADKYGIPYFETSAAT  162 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred             HHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccch-hhhcchHHHHHHHHHHcCCEEEEEeCCC
Confidence            999999999999999999999999998887765566688999999999997 5677888899999999999999999999


Q ss_pred             CCcHHHHHHHHHHHhhcC
Q psy10504        252 KTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i~~~  269 (286)
                      |.|++++|++|++.+.++
T Consensus       163 ~~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         163 GQNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999988653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.3e-29  Score=203.18  Aligned_cols=160  Identities=33%  Similarity=0.535  Sum_probs=141.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceE-EEEEEECCeEEEEEEEeCCCcccchh-hhhhcccCccEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFY-RKEIEVDKAPCVLEILDTAGTEQFAS-MRDLYIKNGQGFV  180 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~DtpG~~~~~~-~~~~~~~~~d~vi  180 (286)
                      |.+||+++|++|||||||++++..+.+...+.++.+... ............+.+||++|...+.. .+..+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            458999999999999999999999999888888776444 56778888888899999999887765 5678899999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC---CCcHHH
Q psy10504        181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN---KTNVNE  257 (286)
Q Consensus       181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~---~~gv~~  257 (286)
                      +|||++++.+++++..|+..+.+....+++|+++|+||+|+. ..+.++.++++.+++.+++++++|||++   ++||++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e  159 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR-SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA  159 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccch-hccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHH
Confidence            999999999999999999999887777799999999999997 5567888999999999999999999997   459999


Q ss_pred             HHHHHH
Q psy10504        258 MFAEIV  263 (286)
Q Consensus       258 l~~~i~  263 (286)
                      +|++|+
T Consensus       160 ~F~~lA  165 (165)
T d1z06a1         160 IFMTLA  165 (165)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            999873

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-28  Score=199.76  Aligned_cols=164  Identities=34%  Similarity=0.553  Sum_probs=141.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccce-EEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDF-YRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .-+||+++|++|||||||++++..+.+...+.+|++.. .......++..+.+.+||++|+.++...+..++..++++++
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   84 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL   84 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence            45899999999999999999999999998888877644 45667778888999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHh---CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVK---GSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNE  257 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~~  257 (286)
                      ++|.+++.+++.+..|+..+....   ..+++|+++|+||+|+.  ++.+...+.+.+++..+ ++|++|||++|.|+++
T Consensus        85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~--~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  162 (174)
T d1wmsa_          85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  162 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS--SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh--hccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHH
Confidence            999999999999999998876653   33578999999999996  46778888999998765 8999999999999999


Q ss_pred             HHHHHHHHhhc
Q psy10504        258 MFAEIVREMNF  268 (286)
Q Consensus       258 l~~~i~~~i~~  268 (286)
                      +|+++++.+..
T Consensus       163 ~f~~l~~~il~  173 (174)
T d1wmsa_         163 AFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999998753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=7.9e-29  Score=202.27  Aligned_cols=163  Identities=34%  Similarity=0.553  Sum_probs=141.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      +||+++|.+|||||||+++++++.+...+.+|.+ +.........+..+.+.+||++|+..+...+..++..+|++++|+
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            7999999999999999999999999998888875 455567778888888999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhC---CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-hcCCCEEEEeCCCCCcHHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKG---SERVPILLVANKLDLASHQREVPTLDGQALAQ-SWGCPFIEASAKNKTNVNEMF  259 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~gv~~l~  259 (286)
                      |.+++.+++.+..|+..+.....   ..++|+++|+||+|+.  .+.....+.+.++. ..++++++|||++|.|++++|
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS--CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccc--ccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            99999999999999988876542   2468999999999986  34455666666654 457999999999999999999


Q ss_pred             HHHHHHhhcC
Q psy10504        260 AEIVREMNFN  269 (286)
Q Consensus       260 ~~i~~~i~~~  269 (286)
                      +++++.+.++
T Consensus       161 ~~l~~~i~~~  170 (184)
T d1vg8a_         161 QTIARNALKQ  170 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999987654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-28  Score=200.24  Aligned_cols=163  Identities=23%  Similarity=0.423  Sum_probs=137.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .+.+||+++|+++||||||++++.++.+.. +.++..+.....+.+++..+.+.+|||+|+..+     .+++.+|++|+
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            457999999999999999999999998855 445666666777889999999999999998764     37888999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHh--CCCCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHh-cCCCEEEEeCCCCCcHHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVK--GSERVPILLVANKLDLAS-HQREVPTLDGQALAQS-WGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~gv~~  257 (286)
                      |||++++.+++.+..|+..+...+  ..+++|+++|+||.|+.. ..+.++..+.+.++.. .+++|++|||++|.|+++
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  156 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDR  156 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHH
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHH
Confidence            999999999999999998887653  345789999999999853 3456777778777655 568999999999999999


Q ss_pred             HHHHHHHHhhcCC
Q psy10504        258 MFAEIVREMNFNP  270 (286)
Q Consensus       258 l~~~i~~~i~~~~  270 (286)
                      +|+.+++.+...+
T Consensus       157 ~F~~l~~~i~~~~  169 (175)
T d2bmja1         157 VFQEVAQKVVTLR  169 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999886544

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.96  E-value=4.3e-29  Score=200.17  Aligned_cols=158  Identities=19%  Similarity=0.280  Sum_probs=129.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY  183 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~  183 (286)
                      ++||+++|++|||||||+++|..+.+...+.+|.+. ....+..++.  .+.+||+||++.+...+..++..++++++||
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~-~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   78 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGF-NMRKITKGNV--TIKLWDIGGQPRFRSMWERYCRGVSAIVYMV   78 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSE-EEEEEEETTE--EEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCccccccee-eeeeeeeeeE--EEEEeeccccccccccccccccccchhhccc
Confidence            689999999999999999999999998888887753 3344555654  4899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH-HHH----HHhcCCCEEEEeCCCCCcHHHH
Q psy10504        184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG-QAL----AQSWGCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~vSa~~~~gv~~l  258 (286)
                      |+++..+++....|+..+......+++|+++|+||.|+.+...   ..+. +.+    .+..+++++++||++|+|++++
T Consensus        79 d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          79 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD---EKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC---HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             ccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhh---HHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            9999999999999988887766667899999999999873222   1211 111    1223467899999999999999


Q ss_pred             HHHHHHHhh
Q psy10504        259 FAEIVREMN  267 (286)
Q Consensus       259 ~~~i~~~i~  267 (286)
                      |+||++.++
T Consensus       156 ~~~l~~~~k  164 (164)
T d1zd9a1         156 LQWLIQHSK  164 (164)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHccC
Confidence            999998653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.96  E-value=4.1e-28  Score=194.32  Aligned_cols=159  Identities=20%  Similarity=0.257  Sum_probs=125.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +.+||+++|++|||||||+++|.+..+. ...+|.+ .....+..++..  +.+||+||++.++..+..+++.++++++|
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~-~~~~~~~~~~~~--~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLG-FNIKTLEHRGFK--LNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSS-EEEEEEEETTEE--EEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEe-eeeeeccccccc--eeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            4689999999999999999999887653 3445553 344455565544  89999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----HhcCCCEEEEeCCCCCcHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA-----QSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~gv~~  257 (286)
                      +|++|..++.+...++..........++|+++|+||+|+.+ ...  ..+.....     +...+++++|||++|+|+++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG-ALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT-CCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccc-ccC--HHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            99999999999888777666545556899999999999972 222  22222221     11235789999999999999


Q ss_pred             HHHHHHHHhhc
Q psy10504        258 MFAEIVREMNF  268 (286)
Q Consensus       258 l~~~i~~~i~~  268 (286)
                      +|+||++.+..
T Consensus       154 ~~~~l~~~i~~  164 (165)
T d1ksha_         154 GIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999998864

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.95  E-value=1.8e-28  Score=198.38  Aligned_cols=160  Identities=19%  Similarity=0.224  Sum_probs=125.8

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF  179 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v  179 (286)
                      .+.+.+||+++|++|||||||+++|.++.+....+ +. ......+..++.  .+.+||++|++.++..+..+++.+|++
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~-~~-~~~~~~i~~~~~--~~~i~d~~g~~~~~~~~~~~~~~~~~i   87 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQ-GFNIKSVQSQGF--KLNVWDIGGQRKIRPYWRSYFENTDIL   87 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE-ET-TEEEEEEEETTE--EEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCccee-ee-eeeEEEeccCCe--eEeEeeccccccchhHHHHHhhcccee
Confidence            34577999999999999999999999987754332 22 233445555554  489999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH-----HHhcCCCEEEEeCCCCCc
Q psy10504        180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL-----AQSWGCPFIEASAKNKTN  254 (286)
Q Consensus       180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~vSa~~~~g  254 (286)
                      ++|||+++..+++++..|+..+.......++|+++|+||+|+.+...   .......     .+...+++++|||++|+|
T Consensus        88 i~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~SA~tg~g  164 (176)
T d1fzqa_          88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP---ASEIAEGLNLHTIRDRVWQIQSCSALTGEG  164 (176)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC---HHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred             EEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc---HHHHHHHHHHHHHHhcCCEEEEEeCCCCCC
Confidence            99999999999999998888777655556899999999999973322   1222111     122346789999999999


Q ss_pred             HHHHHHHHHHHh
Q psy10504        255 VNEMFAEIVREM  266 (286)
Q Consensus       255 v~~l~~~i~~~i  266 (286)
                      ++++|+||++.+
T Consensus       165 v~e~~~~l~~~i  176 (176)
T d1fzqa_         165 VQDGMNWVCKNV  176 (176)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcC
Confidence            999999999864

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.95  E-value=6.5e-28  Score=196.36  Aligned_cols=160  Identities=16%  Similarity=0.272  Sum_probs=122.4

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .+.+||+++|++|||||||++++..+.+... .+|.+ ........++..  +.+||+||++.+..++..++..++++++
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~-~~t~~-~~~~~~~~~~~~--~~i~D~~g~~~~~~~~~~~~~~~~~ii~   90 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG-FNVETLSYKNLK--LNVWDLGGQTSIRPYWRCYYADTAAVIF   90 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTT-CCEEEEEETTEE--EEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccc-eEEEEEeeCCEE--EEEEecccccccchhHHhhhccceeEEE
Confidence            3679999999999999999999988766433 33433 334445555544  8999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH-----HHhcCCCEEEEeCCCCCcHH
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL-----AQSWGCPFIEASAKNKTNVN  256 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~vSa~~~~gv~  256 (286)
                      |+|++++.++.+...|+..+.......+.|+++|+||+|+.+...   ..+....     +...++++++|||++|+|++
T Consensus        91 v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~  167 (182)
T d1moza_          91 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS---ASEVSKELNLVELKDRSWSIVASSAIKGEGIT  167 (182)
T ss_dssp             EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC---HHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccC---HHHHHHHHHHHHHhhCCCEEEEEECCCCCCHH
Confidence            999999999999998887766655566899999999999973222   2222211     12234679999999999999


Q ss_pred             HHHHHHHHHhhc
Q psy10504        257 EMFAEIVREMNF  268 (286)
Q Consensus       257 ~l~~~i~~~i~~  268 (286)
                      ++|++|++.+++
T Consensus       168 e~~~~l~~~i~~  179 (182)
T d1moza_         168 EGLDWLIDVIKE  179 (182)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999876

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.95  E-value=1e-27  Score=193.67  Aligned_cols=161  Identities=16%  Similarity=0.275  Sum_probs=123.5

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +.+||+++|++|||||||++++..+.+.... +|. ...........  +.+.+||+||+..++..+..+++.++++++|
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-~t~-~~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v   86 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTV-GFNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   86 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-EET-TEEEEEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-cee-eeeEEEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEEEE
Confidence            5699999999999999999999987764433 222 23334444444  4589999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHH--HHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQ--ALAQSWGCPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~vSa~~~~gv~~l~~  260 (286)
                      +|+++..++..+..|+..........+.|+++|+||+|+.+...........  ......++.+++|||++|+||+++|+
T Consensus        87 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~  166 (173)
T d1e0sa_          87 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT  166 (173)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred             EecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHH
Confidence            9999999999999888877665555689999999999997332221111110  11122245689999999999999999


Q ss_pred             HHHHHhh
Q psy10504        261 EIVREMN  267 (286)
Q Consensus       261 ~i~~~i~  267 (286)
                      ||.+.++
T Consensus       167 ~l~~~~k  173 (173)
T d1e0sa_         167 WLTSNYK  173 (173)
T ss_dssp             HHHHHCC
T ss_pred             HHHHhcC
Confidence            9998763

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.93  E-value=5.7e-27  Score=185.61  Aligned_cols=158  Identities=13%  Similarity=0.202  Sum_probs=124.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      +||+++|++|||||||+++|.++.+...+..+...    ....+...+.+.+||+||...+...+..++..++++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            58999999999999999999998776654444322    22334455669999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC--CCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504        185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE--VPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI  262 (286)
Q Consensus       185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i  262 (286)
                      .+++.++..+..|+..+.........|+++++||.|+.+....  +........++..++++++|||++|+|++++|++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l  156 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL  156 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred             ecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHH
Confidence            9999999999998888876666668899999999998733221  11111112233345789999999999999999999


Q ss_pred             HHHh
Q psy10504        263 VREM  266 (286)
Q Consensus       263 ~~~i  266 (286)
                      ++++
T Consensus       157 ~~~l  160 (160)
T d1r8sa_         157 SNQL  160 (160)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            9864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=5.6e-24  Score=172.24  Aligned_cols=159  Identities=23%  Similarity=0.214  Sum_probs=117.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh--------hhhhcc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS--------MRDLYI  173 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~--------~~~~~~  173 (286)
                      .-+|+|+|++|||||||+++|++...  .....+++.+.........+..  +.+|||||......        ....++
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~--~~~~DtpG~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQ--IVFVDTPGLHKPMDALGEFMDQEVYEAL   82 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEE--EEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeee--eeecccccccccccccchhccccccccc
Confidence            45799999999999999999998753  3455666666666777777776  88999999754433        223457


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCC
Q psy10504        174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNK  252 (286)
Q Consensus       174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~  252 (286)
                      +++|++++|+|++++....+ ..|...+...  ..++|+++|+||+|+...    ..+..+.+.+..+ ..++++||++|
T Consensus        83 ~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~--~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~iSA~~~  155 (178)
T d1wf3a1          83 ADVNAVVWVVDLRHPPTPED-ELVARALKPL--VGKVPILLVGNKLDAAKY----PEEAMKAYHELLPEAEPRMLSALDE  155 (178)
T ss_dssp             SSCSEEEEEEETTSCCCHHH-HHHHHHHGGG--TTTSCEEEEEECGGGCSS----HHHHHHHHHHTSTTSEEEECCTTCH
T ss_pred             ccccceeeeechhhhhcccc-cchhhheecc--ccchhhhhhhcccccccC----HHHHHHHHHhhcccCceEEEecCCC
Confidence            88999999999998765443 3344444432  347899999999998621    1233445555555 57899999999


Q ss_pred             CcHHHHHHHHHHHhhcCCC
Q psy10504        253 TNVNEMFAEIVREMNFNPE  271 (286)
Q Consensus       253 ~gv~~l~~~i~~~i~~~~~  271 (286)
                      .|+++|+++|++.+++.+.
T Consensus       156 ~gi~~L~~~i~~~lpe~p~  174 (178)
T d1wf3a1         156 RQVAELKADLLALMPEGPF  174 (178)
T ss_dssp             HHHHHHHHHHHTTCCBCCC
T ss_pred             CCHHHHHHHHHHhCCCCCC
Confidence            9999999999999987543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.91  E-value=3.1e-24  Score=172.89  Aligned_cols=158  Identities=16%  Similarity=0.207  Sum_probs=120.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +.+||+++|.+|||||||++++.++.+.......  ..........+..  +.+||++|++.+...+..++..+++++++
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~i~v   89 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI--GSNVEEIVINNTR--FLMWDIGGQESLRSSWNTYYTNTEFVIVV   89 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCS--CSSCEEEEETTEE--EEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCcccccc--ceeEEEEeecceE--EEEeccccccccccchhhhhccceeeeee
Confidence            5699999999999999999999998776433322  2223444455555  88999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----HhcCCCEEEEeCCCCCcHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA-----QSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~gv~~  257 (286)
                      +|.++..+++....+...........+.|+++|+||+|++....   ..+.....     ...++++++|||++|+|+++
T Consensus        90 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e  166 (177)
T d1zj6a1          90 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT---VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ  166 (177)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             cccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc---HHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHH
Confidence            99999999988887776666555556899999999999873322   22222222     22336799999999999999


Q ss_pred             HHHHHHHHhh
Q psy10504        258 MFAEIVREMN  267 (286)
Q Consensus       258 l~~~i~~~i~  267 (286)
                      ++++|.+.++
T Consensus       167 ~~~~L~~~lk  176 (177)
T d1zj6a1         167 GLEWMMSRLK  176 (177)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.90  E-value=2.7e-23  Score=165.26  Aligned_cols=161  Identities=17%  Similarity=0.268  Sum_probs=125.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +.+||+++|++|||||||++++.++.+.... ++.+ ........++..  +.+||.+|+..+......++..+++++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG-FNVETVTYKNLK--FQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSS-EEEEEEEETTEE--EEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-cccc-eeeeeeccCceE--EEEeeccccccccccchhhhhhhhhhhhh
Confidence            4689999999999999999999998876533 2332 333444455554  88999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH----HHHhcCCCEEEEeCCCCCcHHHH
Q psy10504        183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA----LAQSWGCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~vSa~~~~gv~~l  258 (286)
                      +|+.+..++.....++............|+++++||.|+......  .+....    .+...++++++|||++|.|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~  157 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS--SEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  157 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccH--HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH
Confidence            999999988888887666665555568899999999999732221  111122    23334578999999999999999


Q ss_pred             HHHHHHHhhcC
Q psy10504        259 FAEIVREMNFN  269 (286)
Q Consensus       259 ~~~i~~~i~~~  269 (286)
                      |++|++.++++
T Consensus       158 ~~~l~~~l~~k  168 (169)
T d1upta_         158 MEWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhC
Confidence            99999988764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.89  E-value=3.1e-23  Score=168.22  Aligned_cols=162  Identities=17%  Similarity=0.175  Sum_probs=110.8

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc--------ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhc
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE--------DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLY  172 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~  172 (286)
                      ..+.++|+++|++|||||||+|+|++.........+..        ......+..++..  +.++|+||+.+|...+...
T Consensus         2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~d~~g~~~~~~~~~~~   79 (179)
T d1wb1a4           2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYR--ITLVDAPGHADLIRAVVSA   79 (179)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEE--EEECCCSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCcc--ccccccccccccccchhhh
Confidence            35678999999999999999999997433222211111        1112223344444  8899999999999999999


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC-CHHHHHHHHHh-c---CCCEEEE
Q psy10504        173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREV-PTLDGQALAQS-W---GCPFIEA  247 (286)
Q Consensus       173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~-~---~~~~~~v  247 (286)
                      +..+|++++++|++++...+....+ ..+..    .++|+++|+||+|+.+.+... .....+.+.+. .   +.+++++
T Consensus        80 l~~~d~~ilv~d~~~g~~~~~~~~~-~~~~~----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~i  154 (179)
T d1wb1a4          80 ADIIDLALIVVDAKEGPKTQTGEHM-LILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI  154 (179)
T ss_dssp             TTSCCEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred             hhhccccccccccccccchhhhhhh-hhhhh----cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEE
Confidence            9999999999999997655543333 23333    278999999999997322111 11111222222 1   3689999


Q ss_pred             eCCCCCcHHHHHHHHHHHhhcC
Q psy10504        248 SAKNKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       248 Sa~~~~gv~~l~~~i~~~i~~~  269 (286)
                      ||++|+|+++|++.|.+.+++.
T Consensus       155 SA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         155 SAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHHS
T ss_pred             EccCCcCHHHHHHHHHhcCCcc
Confidence            9999999999999999998764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.1e-22  Score=158.08  Aligned_cols=152  Identities=16%  Similarity=0.253  Sum_probs=119.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL  185 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~  185 (286)
                      ||+++|++|||||||++++.++.+.. ..+|.. .........+..  ..+||++|+..+...+..++..++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWH-PTSEELAIGNIK--FTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCS-CEEEEECCTTCC--EEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceee-EeEEEeccCCee--EEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            79999999999999999999987653 344443 333444445554  78999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH------------HhcCCCEEEEeCCCCC
Q psy10504        186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA------------QSWGCPFIEASAKNKT  253 (286)
Q Consensus       186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~vSa~~~~  253 (286)
                      ++..++.....++..........+.|+++++||.|+...   ....+.....            ....+++++|||++|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          78 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA---VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC---CCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             cchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc---CCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            999999998888887777666778999999999998722   2222222211            1122468999999999


Q ss_pred             cHHHHHHHHHH
Q psy10504        254 NVNEMFAEIVR  264 (286)
Q Consensus       254 gv~~l~~~i~~  264 (286)
                      |++++|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999975

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=4.4e-23  Score=163.72  Aligned_cols=151  Identities=25%  Similarity=0.345  Sum_probs=116.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh--------hhhhcc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS--------MRDLYI  173 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~--------~~~~~~  173 (286)
                      .+||+++|++|||||||+|+|++...  ....++++.+.....+...+..  +.+||+||..+...        ....++
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~g~~~~~~~~~~~~~~~~~~~~   78 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQEI   78 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCce--eeeccccccccccccchhHHHHHHHHHH
Confidence            37999999999999999999997654  3455556666677777788876  78899999654332        123457


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCC
Q psy10504        174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT  253 (286)
Q Consensus       174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~  253 (286)
                      ..+|++++++|..+..+.+....|...+...  ..++|+++|+||+|+........        +..+.+++++||++|.
T Consensus        79 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~iilv~NK~Dl~~~~~~~~--------~~~~~~~~~iSAk~~~  148 (161)
T d2gj8a1          79 EQADRVLFMVDGTTTDAVDPAEIWPEFIARL--PAKLPITVVRNKADITGETLGMS--------EVNGHALIRLSARTGE  148 (161)
T ss_dssp             HTCSEEEEEEETTTCCCCSHHHHCHHHHHHS--CTTCCEEEEEECHHHHCCCCEEE--------EETTEEEEECCTTTCT
T ss_pred             Hhccccceeeccccccchhhhhhhhhhhhhc--ccccceeeccchhhhhhhHHHHH--------HhCCCcEEEEECCCCC
Confidence            8899999999999988877777766666553  34799999999999863332211        2245789999999999


Q ss_pred             cHHHHHHHHHHHh
Q psy10504        254 NVNEMFAEIVREM  266 (286)
Q Consensus       254 gv~~l~~~i~~~i  266 (286)
                      |+++++++|.+.+
T Consensus       149 gi~~L~~~l~~~l  161 (161)
T d2gj8a1         149 GVDVLRNHLKQSM  161 (161)
T ss_dssp             THHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999999864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.88  E-value=8.6e-22  Score=158.84  Aligned_cols=158  Identities=17%  Similarity=0.213  Sum_probs=115.6

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV  181 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil  181 (286)
                      .+..||+++|++|||||||+++|.++.+....+ +.. .....+..++..  +.+||++++..+...+..+....+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~-~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP-TLH-PTSEELTIAGMT--FTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------C-CCC-CSCEEEEETTEE--EEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcceec-ccc-cceeEEEecccc--cccccccchhhhhhHHhhhhcccceeee
Confidence            467899999999999999999999987765443 222 223345666665  7889999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-----------------cCCCE
Q psy10504        182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS-----------------WGCPF  244 (286)
Q Consensus       182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~  244 (286)
                      ++|+++...+.....++..........++|+++++||.|++..   ....+.......                 .++++
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA---ISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC---CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc---CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            9999999988888876666665555678999999999998732   223333222221                 12458


Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy10504        245 IEASAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       245 ~~vSa~~~~gv~~l~~~i~~~i  266 (286)
                      ++|||++|+|++++|+||++.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999999865

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=4e-22  Score=161.37  Aligned_cols=162  Identities=15%  Similarity=0.103  Sum_probs=104.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch-------hhhhhcccCcc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA-------SMRDLYIKNGQ  177 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~-------~~~~~~~~~~d  177 (286)
                      .|+|+|.+|||||||+|+|++... .....+++...... .........+++|||||.....       ......+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeec-eeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            489999999999999999987543 22333333322222 2222222338899999954321       12234567899


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHH
Q psy10504        178 GFVVVYSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVN  256 (286)
Q Consensus       178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~  256 (286)
                      ++++++|+.... ......+...+.... ...++|+++|+||+|+.+. ..  ..+........+.+++++||++|+|++
T Consensus        82 ~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~-~~--~~~~~~~~~~~~~~~~~iSA~tg~gid  157 (180)
T d1udxa2          82 VLLYVLDAADEP-LKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EA--VKALADALAREGLAVLPVSALTGAGLP  157 (180)
T ss_dssp             EEEEEEETTSCH-HHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HH--HHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             hhhhhccccccc-ccchhhhhhhhhccccccchhhhhhhhhhhhhhhH-HH--HHHHHHHHHhcCCeEEEEEcCCCCCHH
Confidence            999999987642 233333322222110 1125799999999999732 11  223344445567899999999999999


Q ss_pred             HHHHHHHHHhhcCCCC
Q psy10504        257 EMFAEIVREMNFNPEK  272 (286)
Q Consensus       257 ~l~~~i~~~i~~~~~~  272 (286)
                      +|++.|.+.+...+.+
T Consensus       158 ~L~~~i~~~l~~~~~~  173 (180)
T d1udxa2         158 ALKEALHALVRSTPPP  173 (180)
T ss_dssp             HHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHhhcCCC
Confidence            9999999998765543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=7.4e-22  Score=158.45  Aligned_cols=156  Identities=21%  Similarity=0.211  Sum_probs=105.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch---------hhhhhccc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA---------SMRDLYIK  174 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~---------~~~~~~~~  174 (286)
                      +|+++|++|||||||+++|++...  .....+++.......+...+..  +.+||++|.....         .....++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccc--cccccccceeeeeccccccccccccccccc
Confidence            689999999999999999998553  3455566666666666667766  8889999943221         22344567


Q ss_pred             CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy10504        175 NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTN  254 (286)
Q Consensus       175 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g  254 (286)
                      .+|++++++|.+++...+. ..+...+...    ++|+++|+||+|+.+   .........+.+....+++++||++|.|
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~----~~pviiv~NK~Dl~~---~~~~~~~~~~~~~~~~~~i~iSAk~g~g  151 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKS----TVDTILVANKAENLR---EFEREVKPELYSLGFGEPIPVSAEHNIN  151 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHH----TCCEEEEEESCCSHH---HHHHHTHHHHGGGSSCSCEECBTTTTBS
T ss_pred             cCcEEEEeecccccccccc-cccccccccc----cccccccchhhhhhh---hhhhHHHHHHHhcCCCCeEEEecCCCCC
Confidence            8999999999988765544 3444444443    789999999999862   1111112222223336779999999999


Q ss_pred             HHHHHHHHHHHhhcCCC
Q psy10504        255 VNEMFAEIVREMNFNPE  271 (286)
Q Consensus       255 v~~l~~~i~~~i~~~~~  271 (286)
                      +++++++|++.+++...
T Consensus       152 id~L~~~i~~~l~e~~~  168 (171)
T d1mkya1         152 LDTMLETIIKKLEEKGL  168 (171)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCCCCC
Confidence            99999999999987654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.87  E-value=2.3e-22  Score=169.19  Aligned_cols=161  Identities=19%  Similarity=0.173  Sum_probs=106.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccce-EEEEE----------------EECCeEEEEEEEeCCCcccc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDF-YRKEI----------------EVDKAPCVLEILDTAGTEQF  165 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~-~~~~~----------------~~~~~~~~l~l~DtpG~~~~  165 (286)
                      |.+.|+|+|+++||||||+++|++........+.++.. .....                .+......+.++|||||..|
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f   83 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence            33559999999999999999998753322222111100 01111                11122234889999999999


Q ss_pred             hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHH------------HH
Q psy10504        166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL------------DG  233 (286)
Q Consensus       166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~------------~~  233 (286)
                      ...+...+..+|++|+|+|+.++...+....+.. +..    .++|+|+|+||+|+.+........            ..
T Consensus        84 ~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~-~~~----~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~  158 (227)
T d1g7sa4          84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI-LRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ  158 (227)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH-HHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred             cccchhcccccceEEEEEecccCcccchhHHHHH-hhc----CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHH
Confidence            9988889999999999999998766655443333 332    278999999999987443221100            00


Q ss_pred             -----------HHHHHh--------------cCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        234 -----------QALAQS--------------WGCPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       234 -----------~~~~~~--------------~~~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                                 ..+.+.              ...+++++||++|.|+++|++.|.....+
T Consensus       159 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                       001110              01468999999999999999999887644

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=8.3e-22  Score=160.55  Aligned_cols=158  Identities=16%  Similarity=0.138  Sum_probs=111.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +++||+++|+.|||||||+++|..+.++.     ++ .....+......  +++|||+|++.+..++..+++.++++++|
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t-----~~-~~~~~~~~~~~~--~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAG-----TG-IVETHFTFKDLH--FKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCC-----CS-EEEEEEEETTEE--EEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCC-----cc-EEEEEEEeeeee--eeeeccccccccccchhhcccCCceeeeE
Confidence            46899999999999999999998765543     22 223444555544  99999999999999999999999999999


Q ss_pred             EECCCcccHH----------HHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC--------------CCCCCCHHHHHH-HH
Q psy10504        183 YSLTNHHTFQ----------DIKQMKELITRVKGSERVPILLVANKLDLAS--------------HQREVPTLDGQA-LA  237 (286)
Q Consensus       183 ~d~~~~~s~~----------~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~--------------~~~~~~~~~~~~-~~  237 (286)
                      +|.++..++.          +...++..+.......+.|+++++||+|+..              ........+... +.
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            9999877652          2223333333334455889999999999631              001111122111 11


Q ss_pred             H---h-------cCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        238 Q---S-------WGCPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       238 ~---~-------~~~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      .   .       ..+.+++|||+++.|++++|+.+.+.+.+
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence            1   1       12357799999999999999999887754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.1e-21  Score=160.45  Aligned_cols=161  Identities=17%  Similarity=0.149  Sum_probs=117.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +++||+++|+.|||||||+++|..+.+.  +.||++- ....+....  +.+++||++|++.++..+..+++.+++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~-~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGI-IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSC-EEEEEECSS--CEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeE-EEEEEeccc--eeeeeccccccccccccccccccccceeeEe
Confidence            4689999999999999999999988763  5677763 233344444  4489999999999999999999999999999


Q ss_pred             EECCCccc-----------HHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC---------------CCCCCHHHHHHH
Q psy10504        183 YSLTNHHT-----------FQDIKQMKELITRVKGSERVPILLVANKLDLASH---------------QREVPTLDGQAL  236 (286)
Q Consensus       183 ~d~~~~~s-----------~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~---------------~~~~~~~~~~~~  236 (286)
                      +|.++..+           ++....|...+.. ....++|+++++||.|+...               ....+......+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~-~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITY-PWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHC-GGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhh-hhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            99988542           3344445555444 44568999999999997411               111222222222


Q ss_pred             HHh----------cCCCEEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504        237 AQS----------WGCPFIEASAKNKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       237 ~~~----------~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~  269 (286)
                      ...          ..+.++++||++|+|++++|+.|.+.+.+.
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            111          113478999999999999999998888653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=4.4e-21  Score=155.66  Aligned_cols=158  Identities=24%  Similarity=0.238  Sum_probs=106.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh------------h
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS------------M  168 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~------------~  168 (286)
                      ..+||+++|++|||||||+|+|++...  ...+..++.......+..++..  +.++|+||......            .
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCce--eeeeccCCccccccccccccccchhHH
Confidence            469999999999999999999998653  4555566655556667778877  78899999653322            2


Q ss_pred             hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH-HHHHHhc----CCC
Q psy10504        169 RDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG-QALAQSW----GCP  243 (286)
Q Consensus       169 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-~~~~~~~----~~~  243 (286)
                      ....++.+|++++|+|++.+...+. ..+...+..    .+.|+|+|+||+|+...... ...+. +.+.+..    ..+
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~----~~~~~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~  158 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER----RGRASVVVFNKWDLVVHREK-RYDEFTKLFREKLYFIDYSP  158 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH----TTCEEEEEEECGGGSTTGGG-CHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHhcCCEEEEeecccccchhhH-HHHHHHHHH----cCCceeeeccchhhhcchhh-hhhhHHHHHHHHhcccCCCe
Confidence            3334577999999999987654333 333333333    27899999999998733332 22222 2223222    268


Q ss_pred             EEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        244 FIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       244 ~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      ++++||++|.|+++|+++|.+.+..
T Consensus       159 i~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         159 LIFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999877654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=3.3e-21  Score=152.59  Aligned_cols=148  Identities=21%  Similarity=0.232  Sum_probs=105.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch---------hhhhhcc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA---------SMRDLYI  173 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~---------~~~~~~~  173 (286)
                      +||+++|++|||||||+|+|++...  ....++++.......+...+..  +.+|||||.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCee--EEeccccccccCCccHHHHHHHHHHHHHH
Confidence            5899999999999999999997543  4455556656666777777776  8889999943211         1122346


Q ss_pred             cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCC
Q psy10504        174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT  253 (286)
Q Consensus       174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~  253 (286)
                      ..+|++++|+|++++...+....+.. +      ...|+++++||.|+.+..   ...+.. .....+.+++++||++|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~~-~------~~~~~i~~~~k~d~~~~~---~~~~~~-~~~~~~~~~~~vSA~~g~  147 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILER-I------KNKRYLVVINKVDVVEKI---NEEEIK-NKLGTDRHMVKISALKGE  147 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHHH-H------TTSSEEEEEEECSSCCCC---CHHHHH-HHHTCSTTEEEEEGGGTC
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhhh-c------ccccceeeeeeccccchh---hhHHHH-HHhCCCCcEEEEECCCCC
Confidence            78999999999999876654432221 1      257899999999997322   222221 122344789999999999


Q ss_pred             cHHHHHHHHHHH
Q psy10504        254 NVNEMFAEIVRE  265 (286)
Q Consensus       254 gv~~l~~~i~~~  265 (286)
                      |+++|+++|.+.
T Consensus       148 gi~~L~~~I~ke  159 (160)
T d1xzpa2         148 GLEKLEESIYRE  159 (160)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhc
Confidence            999999998763

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=7.1e-21  Score=155.90  Aligned_cols=160  Identities=20%  Similarity=0.231  Sum_probs=111.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      +.+||+++|++|||||||++++.   +...+.||++ .....+...+..  +++||++|++.++..+..+++.+++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG-~~~~~~~~~~~~--~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKG-IHEYDFEIKNVP--FKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSS-EEEEEEEETTEE--EEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeee-eEEEEEeeeeee--eeeecccceeeecccccccccccceeEEE
Confidence            45899999999999999999993   5666777876 344556666655  89999999999999999999999999999


Q ss_pred             EECCCccc----------HHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC---------------CCCCCHHHHHHHH
Q psy10504        183 YSLTNHHT----------FQDIKQMKELITRVKGSERVPILLVANKLDLASH---------------QREVPTLDGQALA  237 (286)
Q Consensus       183 ~d~~~~~s----------~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~---------------~~~~~~~~~~~~~  237 (286)
                      +|.++..+          ++....++..+.......++|+++++||+|+.+.               ...........+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            99998543          4455555566555445568999999999997411               0011222222222


Q ss_pred             Hh----c-------CCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        238 QS----W-------GCPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       238 ~~----~-------~~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      ..    .       .+.++++||+++.|++++|+.+.+.+.+
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            21    1       1335689999999999999999887654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.84  E-value=1.9e-20  Score=153.59  Aligned_cols=162  Identities=15%  Similarity=0.152  Sum_probs=106.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCC---c-cCCCccce--EEEEEE-------------------ECCeEEEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFME---K-YDPTIEDF--YRKEIE-------------------VDKAPCVLEIL  157 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~---~-~~~t~~~~--~~~~~~-------------------~~~~~~~l~l~  157 (286)
                      ..++|+++|++++|||||+++|.+.....   . ..+.+.+.  ......                   .......+.++
T Consensus         4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (195)
T d1kk1a3           4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   83 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence            56899999999999999999998632211   1 11111111  111110                   01123458999


Q ss_pred             eCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCHHHHHHH
Q psy10504        158 DTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPTLDGQAL  236 (286)
Q Consensus       158 DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~  236 (286)
                      |||||++|.....+.+..+|++++|+|+.++...+...+.+..+... .  ..++++++||+|+.+.... ........+
T Consensus        84 DtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~--~~~iiv~inK~D~~d~~~~~~~~~~~~~~  160 (195)
T d1kk1a3          84 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-G--QKNIIIAQNKIELVDKEKALENYRQIKEF  160 (195)
T ss_dssp             ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-T--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-c--CccceeeeecccchhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999875444344333333332 1  2358889999998732211 111122222


Q ss_pred             HHhcC---CCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        237 AQSWG---CPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       237 ~~~~~---~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      ....+   ++++++||++|+|+++|++.|.+.+|
T Consensus       161 ~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         161 IEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            22222   68999999999999999999998775

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.84  E-value=3.7e-21  Score=159.19  Aligned_cols=164  Identities=16%  Similarity=0.158  Sum_probs=105.3

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhcCcCCCcc--CCC--ccce--EEEEEEE------------------------CCeE
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKY--DPT--IEDF--YRKEIEV------------------------DKAP  151 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~--~~t--~~~~--~~~~~~~------------------------~~~~  151 (286)
                      .++++|+++|+.++|||||+++|.+.......  ...  ..+.  .......                        ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            35689999999999999999999863211000  000  0000  0001000                        1122


Q ss_pred             EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCC-H
Q psy10504        152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVP-T  230 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~-~  230 (286)
                      ..+.++|||||.+|.......+..+|++|+|+|+.++......+..+..+...   .-.|+||++||+|+.+...... .
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHHHH
Confidence            35899999999999998888999999999999999874222233333333332   1248899999999973222111 1


Q ss_pred             HHHHHHHHhc---CCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        231 LDGQALAQSW---GCPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       231 ~~~~~~~~~~---~~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                      .....+....   .++++++||++|.|+++|++.|..++++
T Consensus       163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            1111122222   2789999999999999999999998875

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=1.6e-21  Score=157.82  Aligned_cols=150  Identities=20%  Similarity=0.197  Sum_probs=98.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCC-CccCCCccceEEEEEEECCeEEEEEEEeCCCcccc---------------hhhh
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF---------------ASMR  169 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~---------------~~~~  169 (286)
                      .|+++|.+|||||||+|+|.+.... +.+++++.+...  +...+    +.+|||||....               ....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~--~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecccc--ccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            5899999999999999999986553 344445544322  33333    568999995211               1122


Q ss_pred             hhcccCccEEEEEEECCCcccHHHHH----------HHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh
Q psy10504        170 DLYIKNGQGFVVVYSLTNHHTFQDIK----------QMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS  239 (286)
Q Consensus       170 ~~~~~~~d~vilv~d~~~~~s~~~~~----------~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~  239 (286)
                      ...++.+|++++|+|+.++.......          .....+..    .++|+++|+||+|+..+.+    .....+.+.
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~----~~~p~iiv~NK~D~~~~~~----~~~~~~~~~  147 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE----LDIPTIVAVNKLDKIKNVQ----EVINFLAEK  147 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH----TTCCEEEEEECGGGCSCHH----HHHHHHHHH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH----cCCCEEEEEeeeehhhhHH----HHHHHHHHH
Confidence            34467899999999997643221111          11222222    3789999999999862221    122222222


Q ss_pred             cC-------CCEEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504        240 WG-------CPFIEASAKNKTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       240 ~~-------~~~~~vSa~~~~gv~~l~~~i~~~i~~~  269 (286)
                      ..       ..++++||++|.|+++|+++|.+.++++
T Consensus       148 ~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         148 FEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             HTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             hcccccccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence            22       3488999999999999999999998863

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.83  E-value=9.2e-21  Score=155.51  Aligned_cols=160  Identities=16%  Similarity=0.133  Sum_probs=108.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCc----------------CCC-ccCCCccceEEEEEEECCeEEEEEEEeCCCcccc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGC----------------FME-KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF  165 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~----------------~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~  165 (286)
                      ++++|+++||+++|||||+++|....                ... ...+.+.+.....+...+  ..+.++|||||.+|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~--~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGHADY   79 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEece--eeEEeecCcchHHH
Confidence            46899999999999999999997510                000 111111122223333344  44899999999999


Q ss_pred             hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCC--HHHHHHHHHhcC--
Q psy10504        166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVP--TLDGQALAQSWG--  241 (286)
Q Consensus       166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~--  241 (286)
                      .....+.+..+|++++|+|++++..-++...|... ...   ...|+||++||+|+.+......  ..+...+...++  
T Consensus        80 ~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a-~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~  155 (196)
T d1d2ea3          80 VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLA-RQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK  155 (196)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHH-HHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHH-HHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999998765544333322 221   2458999999999873221111  112333333333  


Q ss_pred             ---CCEEEEeCCCC----------CcHHHHHHHHHHHhhc
Q psy10504        242 ---CPFIEASAKNK----------TNVNEMFAEIVREMNF  268 (286)
Q Consensus       242 ---~~~~~vSa~~~----------~gv~~l~~~i~~~i~~  268 (286)
                         +|++++||++|          .|+.+|++.|.+.++.
T Consensus       156 ~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP~  195 (196)
T d1d2ea3         156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (196)
T ss_dssp             TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             cccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCCC
Confidence               67999999998          5999999999887764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=6.2e-21  Score=154.85  Aligned_cols=159  Identities=20%  Similarity=0.205  Sum_probs=105.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEEC-CeEEEEEEEeCCCcccch----hhhh---hcccCc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVD-KAPCVLEILDTAGTEQFA----SMRD---LYIKNG  176 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~l~l~DtpG~~~~~----~~~~---~~~~~~  176 (286)
                      +|+|+|++|||||||+|+|.+... ...+.+++.+.......+. +..  +++|||||..+..    .+..   ..+..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRS--FVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCE--EEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcE--EEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            699999999999999999987543 3445555554444444443 444  7899999963221    1222   234568


Q ss_pred             cEEEEEEECCCcccHHHHHH--HHHHHHHH--hCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc--CCCEEEEeCC
Q psy10504        177 QGFVVVYSLTNHHTFQDIKQ--MKELITRV--KGSERVPILLVANKLDLASHQREVPTLDGQALAQSW--GCPFIEASAK  250 (286)
Q Consensus       177 d~vilv~d~~~~~s~~~~~~--~~~~i~~~--~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~vSa~  250 (286)
                      +.++++++............  +.......  ....++|+++|+||+|+.+.     ....+.+.+..  +.+++.+||+
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~-----~~~~~~~~~~~~~~~~v~~iSA~  155 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-----AENLEAFKEKLTDDYPVFPISAV  155 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----HHHHHHHHHHCCSCCCBCCCSSC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH-----HHHHHHHHHHhccCCcEEEEECC
Confidence            88888888775443322222  22222221  13347899999999999721     22334444444  4789999999


Q ss_pred             CCCcHHHHHHHHHHHhhcCCC
Q psy10504        251 NKTNVNEMFAEIVREMNFNPE  271 (286)
Q Consensus       251 ~~~gv~~l~~~i~~~i~~~~~  271 (286)
                      +|.|+++|++.|++.+++.+.
T Consensus       156 ~g~Gi~~L~~~i~~~L~~~p~  176 (185)
T d1lnza2         156 TREGLRELLFEVANQLENTPE  176 (185)
T ss_dssp             CSSTTHHHHHHHHHHHTSCCC
T ss_pred             CCCCHHHHHHHHHHhhhhCCC
Confidence            999999999999999977554

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=6.4e-20  Score=151.47  Aligned_cols=142  Identities=18%  Similarity=0.178  Sum_probs=98.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC--------cCCC----------ccCCCccceEEEEEEECCeEEEEEEEeCCCccc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG--------CFME----------KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ  164 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~--------~~~~----------~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~  164 (286)
                      ++++|+++||+++|||||+++|+..        .+..          ...+.+.+.....+..++..  +.|+|||||.+
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~--i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRH--YSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCE--EEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeE--EEEEeCCCchh
Confidence            4689999999999999999999631        0000          01133335555666677766  88999999999


Q ss_pred             chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCCCC--HHHHHHHHHhcC
Q psy10504        165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQREVP--TLDGQALAQSWG  241 (286)
Q Consensus       165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~  241 (286)
                      |.....+.++.+|++|+|+|++++...+..+.|......     ++| ++|++||+|+.+......  ..+...+....+
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~-----gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~  154 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-----GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  154 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-----TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999998877766554444333     666 778899999873221111  122233333332


Q ss_pred             -----CCEEEEeCCC
Q psy10504        242 -----CPFIEASAKN  251 (286)
Q Consensus       242 -----~~~~~vSa~~  251 (286)
                           ++++..||..
T Consensus       155 ~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         155 FPGDEVPVIRGSALL  169 (204)
T ss_dssp             SCTTTSCEEECCHHH
T ss_pred             CCcccceeeeeechh
Confidence                 5688888864

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.80  E-value=2.3e-19  Score=146.65  Aligned_cols=153  Identities=16%  Similarity=0.192  Sum_probs=94.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCC---CccCCCccceEEEEEEECCeEEEEEEEeCCCcccc-------------h
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFM---EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF-------------A  166 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~-------------~  166 (286)
                      .-++|+|+|++|||||||+|+|++....   ...+.++.+...  ..... .  +.+.|++|....             .
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~--~~~~~-~--~~~~d~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF--YIIND-E--LHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEE--EEETT-T--EEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccc--ccccc-c--ceEEEEEeeccccccccccchhhhHH
Confidence            3358999999999999999999985432   222222222222  22222 2  456777763211             1


Q ss_pred             hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh----cCC
Q psy10504        167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS----WGC  242 (286)
Q Consensus       167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~  242 (286)
                      ......+..++++++++|++++...+. ..++..+...    ++|+++|+||+|+.. .... ....+.+.+.    ...
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~~----~~piivv~NK~D~~~-~~~~-~~~~~~~~~~l~~~~~~  169 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKYY----GIPVIVIATKADKIP-KGKW-DKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT----TCCEEEEEECGGGSC-GGGH-HHHHHHHHHHHTCCTTS
T ss_pred             hhhhccccchhhhhhhhhccccccccc-cccccccccc----cCcceechhhccccC-HHHH-HHHHHHHHHHhcccCCC
Confidence            122344567899999999987654333 3444444442    789999999999862 2211 2222333333    336


Q ss_pred             CEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        243 PFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       243 ~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      +++++||++|.|+++++++|.+.+.
T Consensus       170 ~~~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         170 ELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            7899999999999999999998774

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=4.9e-19  Score=146.03  Aligned_cols=117  Identities=19%  Similarity=0.274  Sum_probs=85.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch-hhhhhcccCccEEEEEEE
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA-SMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~-~~~~~~~~~~d~vilv~d  184 (286)
                      +|+++|++|||||||+++|.++.+...++ +.+..........+..+.+.+||++|++.++ ..+..++..++++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccC-CeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            69999999999999999999988766553 3333322222223445569999999999886 467888899999999999


Q ss_pred             CCCccc-HHHHHHHHHHH-HHHh-CCCCCcEEEEEeCCCCCC
Q psy10504        185 LTNHHT-FQDIKQMKELI-TRVK-GSERVPILLVANKLDLAS  223 (286)
Q Consensus       185 ~~~~~s-~~~~~~~~~~i-~~~~-~~~~~piivv~nK~Dl~~  223 (286)
                      +++..+ +.+...++..+ .... ...++|++||+||+|++.
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            998665 34444444333 3222 234689999999999974

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.4e-18  Score=139.59  Aligned_cols=159  Identities=17%  Similarity=0.126  Sum_probs=107.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCC--CccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh---------hhhhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFM--EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS---------MRDLY  172 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~---------~~~~~  172 (286)
                      .-.|+|+|.+|||||||+|+|++....  .....++..........+...  +..+|++|......         .....
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQ--AIYVDTPGLHMEEKRAINRLMNKAASSS   82 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEE--EEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCce--eEeecCCCceecchhhhhhhhhhccccc
Confidence            346999999999999999999986542  334445545556666666666  66789888542211         22233


Q ss_pred             ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCC
Q psy10504        173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKN  251 (286)
Q Consensus       173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~  251 (286)
                      ...+++++++.|..+...  ....+...+..    ...|.++|+||.|...+... .....+.....++ .+++++||++
T Consensus        83 ~~~~~~~l~~~d~~~~~~--~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~~~-~~~~~~~~~~~~~~~~~~~vSA~~  155 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWTP--DDEMVLNKLRE----GKAPVILAVNKVDNVQEKAD-LLPHLQFLASQMNFLDIVPISAET  155 (179)
T ss_dssp             CCCEEEEEEEEETTCCCH--HHHHHHHHHHS----SSSCEEEEEESTTTCCCHHH-HHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             hhhcceeEEEEecCccch--hHHHHHHHhhh----ccCceeeeeeeeeccchhhh-hhhHhhhhhhhcCCCCEEEEeCcC
Confidence            456888888888876432  22222222222    36789999999998733222 2333445555555 6899999999


Q ss_pred             CCcHHHHHHHHHHHhhcCCC
Q psy10504        252 KTNVNEMFAEIVREMNFNPE  271 (286)
Q Consensus       252 ~~gv~~l~~~i~~~i~~~~~  271 (286)
                      |.|+++|+++|.+.+++.+.
T Consensus       156 g~gi~~L~~~i~~~lpe~~~  175 (179)
T d1egaa1         156 GLNVDTIAAIVRKHLPEATH  175 (179)
T ss_dssp             TTTHHHHHHHHHTTCCBCCC
T ss_pred             CCCHHHHHHHHHHhCCCCCC
Confidence            99999999999999987654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.76  E-value=6e-18  Score=141.13  Aligned_cols=149  Identities=20%  Similarity=0.168  Sum_probs=98.4

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhc--CcCCC----------ccCCC----------------------ccceEEEEEE
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVS--GCFME----------KYDPT----------------------IEDFYRKEIE  146 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~----------~~~~t----------------------~~~~~~~~~~  146 (286)
                      ....++|+++||+++|||||+.+|+.  +.+..          ...++                      +.+.....+.
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            34678999999999999999999964  11111          00000                      0011222333


Q ss_pred             ECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCC
Q psy10504        147 VDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQ  225 (286)
Q Consensus       147 ~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~  225 (286)
                      ..+.  ++.++|+|||..|.......+..+|++++|+|+.++..-+....+... ..    .++| +|+++||+|+.+..
T Consensus        86 ~~~~--~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~-~~----~gv~~iiv~vNK~D~~~~~  158 (222)
T d1zunb3          86 TAKR--KFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIA-SL----LGIKHIVVAINKMDLNGFD  158 (222)
T ss_dssp             CSSE--EEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHH-HH----TTCCEEEEEEECTTTTTSC
T ss_pred             ccce--EEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHHHH-HH----cCCCEEEEEEEcccccccc
Confidence            3343  489999999999999999999999999999999998766654433322 22    1555 78899999997433


Q ss_pred             CCCCH---HHHHHHHHhcC-----CCEEEEeCCCCCcHH
Q psy10504        226 REVPT---LDGQALAQSWG-----CPFIEASAKNKTNVN  256 (286)
Q Consensus       226 ~~~~~---~~~~~~~~~~~-----~~~~~vSa~~~~gv~  256 (286)
                      .....   .+...+.+..+     ++++++||++|+|+.
T Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         159 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            22111   12333444444     468999999999883

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=2.2e-19  Score=150.08  Aligned_cols=159  Identities=16%  Similarity=0.203  Sum_probs=114.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV  182 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv  182 (286)
                      ...||+++|+.|||||||++++..+.+    .||++ .....+..++..  +++||++|++.++..|..+++++++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG-~~~~~~~~~~~~--~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v   77 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSG-IFETKFQVDKVN--FHMFDVGGQRDERRKWIQCFNDVTAIIFV   77 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCS-CEEEEEEETTEE--EEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCC-eEEEEEEECcEE--EEEEecCccceeccchhhhcccccceEEE
Confidence            458999999999999999999986644    35655 445566777755  89999999999999999999999999999


Q ss_pred             EECCCcc----------cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC---CC---------------------
Q psy10504        183 YSLTNHH----------TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR---EV---------------------  228 (286)
Q Consensus       183 ~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~---~~---------------------  228 (286)
                      +|.++..          .+.+...++..+.......++|++|++||+|+.+...   ..                     
T Consensus        78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~  157 (221)
T d1azta2          78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPE  157 (221)
T ss_dssp             EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCC
T ss_pred             EEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccccc
Confidence            9998642          2344444455555544556899999999999842100   00                     


Q ss_pred             -----CHHHHHH-----HHHhcC--------CCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504        229 -----PTLDGQA-----LAQSWG--------CPFIEASAKNKTNVNEMFAEIVREMNF  268 (286)
Q Consensus       229 -----~~~~~~~-----~~~~~~--------~~~~~vSa~~~~gv~~l~~~i~~~i~~  268 (286)
                           .......     +.....        +-.+++||+++.+++.+|+.+.+.|.+
T Consensus       158 ~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~  215 (221)
T d1azta2         158 PGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR  215 (221)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence                 0111111     111111        224689999999999999988777654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=3.7e-17  Score=139.99  Aligned_cols=111  Identities=15%  Similarity=0.133  Sum_probs=85.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC--cCCC-----------c------cCCCccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG--CFME-----------K------YDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA  166 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~--~~~~-----------~------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~  166 (286)
                      +|+++||.++|||||+.+++..  ....           +      ..+.+.......+.+++..  ++++|||||.+|.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~--~n~iDtPG~~dF~   85 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHR--INIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEE--EEEECCCSSSSCS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeE--EEEecCCchhhhH
Confidence            6999999999999999999741  1110           0      0111112234556677776  8999999999999


Q ss_pred             hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                      ......++.+|++|+|+|+.++...+..+-|...-..     ++|.++++||+|...
T Consensus        86 ~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~-----~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          86 IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTG  137 (276)
T ss_dssp             TTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTT-----TCCEEEEEECTTSTT
T ss_pred             HHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHc-----CCCEEEEEecccccc
Confidence            9999999999999999999999888877776554333     899999999999863

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.71  E-value=1e-16  Score=136.73  Aligned_cols=110  Identities=17%  Similarity=0.151  Sum_probs=86.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC--cCCC------c-----------cCCCccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG--CFME------K-----------YDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA  166 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~--~~~~------~-----------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~  166 (286)
                      +|+++||.++|||||+.+++..  ....      .           ..+.+.......+.+++..  ++++|||||.+|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~--~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHR--VFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEE--EEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccc--eeEEccCchhhhh
Confidence            6899999999999999999641  1110      0           1111223344567777776  8899999999999


Q ss_pred             hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504        167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA  222 (286)
Q Consensus       167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~  222 (286)
                      ......++.+|++|+|+|+.++...+....|......     ++|.++++||+|..
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~-----~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL-----GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhc-----cccccccccccccc
Confidence            9999999999999999999999888877776655444     89999999999974

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.70  E-value=1e-17  Score=140.05  Aligned_cols=153  Identities=18%  Similarity=0.216  Sum_probs=93.8

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC--cCC------------------------------CccCCCccceEEEEEEECCe
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG--CFM------------------------------EKYDPTIEDFYRKEIEVDKA  150 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~------------------------------~~~~~t~~~~~~~~~~~~~~  150 (286)
                      ++++|+++||.++|||||+.+|+..  .+.                              ....+.+.+.....+..++ 
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~-   80 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK-   80 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC-
Confidence            3689999999999999999998631  100                              0011111111222333344 


Q ss_pred             EEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHH---HHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC
Q psy10504        151 PCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQD---IKQMKELITRVKGSERVPILLVANKLDLASHQRE  227 (286)
Q Consensus       151 ~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~---~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~  227 (286)
                       +.+.++|||||..|...+...++.+|++|+|+|+.++...+.   ..+..+.+.........++|+++||+|+......
T Consensus        81 -~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~  159 (224)
T d1jnya3          81 -YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD  159 (224)
T ss_dssp             -CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred             -ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCcccc
Confidence             449999999999999999999999999999999998642221   1122222222222223468999999998632211


Q ss_pred             C-----CHHHHHHHHHhcC-----CCEEEEeCCCCCcHHH
Q psy10504        228 V-----PTLDGQALAQSWG-----CPFIEASAKNKTNVNE  257 (286)
Q Consensus       228 ~-----~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~  257 (286)
                      .     .......+...++     ++++++||.+|.|+.+
T Consensus       160 ~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         160 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            0     1112223333333     5689999999999854

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=2e-17  Score=139.41  Aligned_cols=147  Identities=18%  Similarity=0.169  Sum_probs=96.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc--CcCCC------------------------------ccCCCccceEEEEEEECCe
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS--GCFME------------------------------KYDPTIEDFYRKEIEVDKA  150 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~------------------------------~~~~t~~~~~~~~~~~~~~  150 (286)
                      ..++|+++||.++|||||+.+|+.  +.+..                              ...+-+.+.....+...+.
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~   84 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   84 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCE
Confidence            458999999999999999999963  11110                              0111122333445555554


Q ss_pred             EEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCccc-------HHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCC
Q psy10504        151 PCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHT-------FQDIKQMKELITRVKGSERVP-ILLVANKLDLA  222 (286)
Q Consensus       151 ~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s-------~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~  222 (286)
                      .  +.|+|||||.+|...+.+.+..+|++|+|+|+.++..       .+....|.. ...    -++| +|+++||+|+.
T Consensus        85 ~--i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~-~~~----~gv~~iiv~iNKmD~~  157 (239)
T d1f60a3          85 Q--VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALL-AFT----LGVRQLIVAVNKMDSV  157 (239)
T ss_dssp             E--EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHH-HHH----TTCCEEEEEEECGGGG
T ss_pred             E--EEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHH-HHH----cCCCeEEEEEECCCCC
Confidence            4  8999999999999999999999999999999987531       122222222 222    1565 78899999987


Q ss_pred             CCCCCC---CHHHHHHHHHhcC-----CCEEEEeCCCCCcHH
Q psy10504        223 SHQREV---PTLDGQALAQSWG-----CPFIEASAKNKTNVN  256 (286)
Q Consensus       223 ~~~~~~---~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~  256 (286)
                      +.....   ...+...+....+     ++++++||.+|.|+-
T Consensus       158 ~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         158 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence            433221   1122333344433     678999999998863

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.68  E-value=4.8e-17  Score=137.62  Aligned_cols=153  Identities=18%  Similarity=0.173  Sum_probs=83.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhc--CcCCC------------------------------ccCCCccceEEEEEEECC
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVS--GCFME------------------------------KYDPTIEDFYRKEIEVDK  149 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~------------------------------~~~~t~~~~~~~~~~~~~  149 (286)
                      ...++|+++||.++|||||+.+|+.  +.+..                              ...+.+.+.....+...+
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            3568999999999999999999953  11110                              000000011112223333


Q ss_pred             eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHH------HHHHHHHHHHHHhCCCCC-cEEEEEeCCCCC
Q psy10504        150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQ------DIKQMKELITRVKGSERV-PILLVANKLDLA  222 (286)
Q Consensus       150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~------~~~~~~~~i~~~~~~~~~-piivv~nK~Dl~  222 (286)
                        .++.++|||||..|.....+....+|++++|+|+.++..-.      .....+..+..    .++ ++++++||+|+.
T Consensus       102 --~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~----~~i~~iiv~iNKmD~~  175 (245)
T d1r5ba3         102 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEP  175 (245)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTST
T ss_pred             --ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH----cCCCeEEEEEEcCCCC
Confidence              34899999999999999999999999999999998853111      12222222222    145 488999999997


Q ss_pred             CCCCC-CC----HHHHHHHHHhc-C------CCEEEEeCCCCCcHHHHHH
Q psy10504        223 SHQRE-VP----TLDGQALAQSW-G------CPFIEASAKNKTNVNEMFA  260 (286)
Q Consensus       223 ~~~~~-~~----~~~~~~~~~~~-~------~~~~~vSa~~~~gv~~l~~  260 (286)
                      ..... ..    ..+...+.+.. +      ++++++||++|+|+.++++
T Consensus       176 ~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         176 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            32211 00    11112222222 1      5799999999999976544

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=1.1e-16  Score=131.48  Aligned_cols=116  Identities=15%  Similarity=0.198  Sum_probs=82.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhc----ccCccE
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLY----IKNGQG  178 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~----~~~~d~  178 (286)
                      .+++|+|+|++|||||||+|+|.++.+...   ++.+.....+..++..  +.+|||||++.+...+..+    ...++.
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~---tt~~~~~~~~~~~~~~--~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAADYDGSG--VTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEETTGGGSS--CEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCe---EEecceEEEEEeCCeE--EEEEecccccchhhHHHHHHHHHhhhccc
Confidence            357899999999999999999998765432   3333334444445555  8899999999776655444    455688


Q ss_pred             EEEEEECCC-cccHHHHHHHHHHHH---HHhCCCCCcEEEEEeCCCCCC
Q psy10504        179 FVVVYSLTN-HHTFQDIKQMKELIT---RVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       179 vilv~d~~~-~~s~~~~~~~~~~i~---~~~~~~~~piivv~nK~Dl~~  223 (286)
                      +++++|+.+ ..+++....|+..+.   ......++|+++|+||+|+..
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~  125 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  125 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccc
Confidence            999999775 556666666554332   223446899999999999974

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2.5e-16  Score=126.53  Aligned_cols=158  Identities=16%  Similarity=0.106  Sum_probs=87.3

Q ss_pred             CCcceEEEEEECCCCCcHHHHHHHHhcCcCCC--ccCCCccceEEEEEEECCeEEEEEEEeCCC-cccchh---------
Q psy10504        100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFME--KYDPTIEDFYRKEIEVDKAPCVLEILDTAG-TEQFAS---------  167 (286)
Q Consensus       100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG-~~~~~~---------  167 (286)
                      +....++|+++|.+|||||||+|+|.+.....  ...+++...........+..  ....+.++ ......         
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   89 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKR--LVDLPGYGYAEVPEEMKRKWQRAL   89 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEE--EEECCCCC------CCHHHHHHHH
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccc--eeeeecccccchhhhhhhhhhhhh
Confidence            34567999999999999999999999875432  22233333333333333333  22233332 111111         


Q ss_pred             -hhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh---c--C
Q psy10504        168 -MRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS---W--G  241 (286)
Q Consensus       168 -~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~---~--~  241 (286)
                       ...........++.+.+......... ..+...+..    ...++++++||+|+.+....  ....+.+.+.   .  .
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~--~~~~~~~~~~l~~~~~~  162 (188)
T d1puia_          90 GEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD----SNIAVLVLLTKADKLASGAR--KAQLNMVREAVLAFNGD  162 (188)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH----TTCCEEEEEECGGGSCHHHH--HHHHHHHHHHHGGGCSC
T ss_pred             hhhhhhhhheeEEEEeecccccchhHH-HHHHHHhhh----ccccccchhhhhhccCHHHH--HHHHHHHHHHHHhhCCC
Confidence             11222344566777777766554443 233333333    26799999999998732111  1112222222   2  2


Q ss_pred             CCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504        242 CPFIEASAKNKTNVNEMFAEIVREM  266 (286)
Q Consensus       242 ~~~~~vSa~~~~gv~~l~~~i~~~i  266 (286)
                      .+++++||++|.|+++|++.|.+.+
T Consensus       163 ~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         163 VQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999987654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=8.6e-15  Score=128.75  Aligned_cols=115  Identities=20%  Similarity=0.241  Sum_probs=85.2

Q ss_pred             eE-EEEEECCCCCcHHHHHHHHhc--CcCCCc---------------cCCCccceEEEEEEE--------------CCeE
Q psy10504        104 EF-KVVVLGSGGVGKSALTVQFVS--GCFMEK---------------YDPTIEDFYRKEIEV--------------DKAP  151 (286)
Q Consensus       104 ~~-kV~ivG~~~~GKTSLi~~l~~--~~~~~~---------------~~~t~~~~~~~~~~~--------------~~~~  151 (286)
                      .+ +|+|+||.++|||||+.+|+.  +.....               ..+.+.......+.+              ++..
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            35 599999999999999999973  111110               011111111122222              3456


Q ss_pred             EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                      +.++++|||||.+|.......++.+|++++|+|+.++...+...-|......     ++|+++++||+|...
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~-----~~p~i~viNKiDr~~  162 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE-----RIKPVVVINKVDRAL  162 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCEEEEEEECHHHHH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc-----CCCeEEEEECccccc
Confidence            7799999999999999999999999999999999999888887777666555     899999999999753

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=1.3e-12  Score=117.69  Aligned_cols=157  Identities=14%  Similarity=0.148  Sum_probs=92.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcCC------CccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh-----hhhh
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCFM------EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS-----MRDL  171 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~-----~~~~  171 (286)
                      .+++|+|+|.+|+|||||+|+|++....      .+..+|+.+...+.. .++..  +.+|||||......     +...
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~-~~~~~--~~l~DtPG~~~~~~~~~~~~~~~  131 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPN--VVFWDLPGIGSTNFPPDTYLEKM  131 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTT--EEEEECCCGGGSSCCHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeec-cCCCe--EEEEeCCCcccccccHHHHHHHh
Confidence            3589999999999999999999984332      122233333333221 22333  77999999654332     2223


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC------CCCCCCCHHHH-HHH-------H
Q psy10504        172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA------SHQREVPTLDG-QAL-------A  237 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~------~~~~~~~~~~~-~~~-------~  237 (286)
                      .+..+|.++++.|..  -+-++. .....+.+    .++|+++|.||+|..      +.......+.. +.+       .
T Consensus       132 ~~~~~d~~l~~~~~~--~~~~d~-~l~~~l~~----~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l  204 (400)
T d1tq4a_         132 KFYEYDFFIIISATR--FKKNDI-DIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF  204 (400)
T ss_dssp             TGGGCSEEEEEESSC--CCHHHH-HHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhhcceEEEEecCCC--CCHHHH-HHHHHHHH----cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHH
Confidence            356678888877643  222332 33344444    278999999999953      11111121111 111       1


Q ss_pred             HhcC---CCEEEEeCCC--CCcHHHHHHHHHHHhhcC
Q psy10504        238 QSWG---CPFIEASAKN--KTNVNEMFAEIVREMNFN  269 (286)
Q Consensus       238 ~~~~---~~~~~vSa~~--~~gv~~l~~~i~~~i~~~  269 (286)
                      +..+   .+++.+|..+  ..|+.+|.+.+.+.+++.
T Consensus       205 ~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         205 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             HHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            2222   4678888765  458999999999887753

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.37  E-value=6.9e-12  Score=106.19  Aligned_cols=119  Identities=18%  Similarity=0.156  Sum_probs=81.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh-------hhh--h
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS-------MRD--L  171 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~-------~~~--~  171 (286)
                      ..++|+++|.+|+|||||+|++++...  +....+++.+........++..  +.++||||..+...       ...  .
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~--i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFT--LNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEE--EEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEE--EEEEeeecccCCcchHHHHHHHHHHHH
Confidence            569999999999999999999998643  3445567777777777888876  88999999542211       111  1


Q ss_pred             cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCC-CCCcEEEEEeCCCCCC
Q psy10504        172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGS-ERVPILLVANKLDLAS  223 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~~  223 (286)
                      .....|++++|+++++..--+.-...+..+...... --.++++|.||+|...
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  161 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence            224578999999988753223333334444432211 1258899999999873

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.33  E-value=1.5e-13  Score=114.69  Aligned_cols=110  Identities=15%  Similarity=0.052  Sum_probs=66.9

Q ss_pred             EEEEEeCCCcccchhhhhhcc-----cCccEEEEEEECCCcccHHHHHHHH---HHHHHHhCCCCCcEEEEEeCCCCCCC
Q psy10504        153 VLEILDTAGTEQFASMRDLYI-----KNGQGFVVVYSLTNHHTFQDIKQMK---ELITRVKGSERVPILLVANKLDLASH  224 (286)
Q Consensus       153 ~l~l~DtpG~~~~~~~~~~~~-----~~~d~vilv~d~~~~~s~~~~~~~~---~~i~~~~~~~~~piivv~nK~Dl~~~  224 (286)
                      .+.++|+|||..+...+....     ...+.+++++|+......+......   ......   -..|.++|+||+|+.+.
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLSE  172 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCCH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeeccccccH
Confidence            478899999987655433321     2456899999987644433322211   111111   16799999999998732


Q ss_pred             CCCCC-------H---------------HHHHH---HHH--hcCCCEEEEeCCCCCcHHHHHHHHHHH
Q psy10504        225 QREVP-------T---------------LDGQA---LAQ--SWGCPFIEASAKNKTNVNEMFAEIVRE  265 (286)
Q Consensus       225 ~~~~~-------~---------------~~~~~---~~~--~~~~~~~~vSa~~~~gv~~l~~~i~~~  265 (286)
                      .....       .               .....   ..+  ...++++++||++|+|++++++.|.+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            21000       0               00000   011  123789999999999999999998774

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=5.3e-12  Score=110.30  Aligned_cols=102  Identities=20%  Similarity=0.213  Sum_probs=58.2

Q ss_pred             EEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCHHH
Q psy10504        154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPTLD  232 (286)
Q Consensus       154 l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~  232 (286)
                      +.+++|.|.-.-.   ..+...+|.+++|.+...++..+..+.....+         +=++|+||+|+...... ....+
T Consensus       149 ~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---------aDi~VvNKaD~~~~~~~~~~~~~  216 (327)
T d2p67a1         149 VVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLMEV---------ADLIVINKDDGDNHTNVAIARHM  216 (327)
T ss_dssp             EEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHHH---------CSEEEECCCCTTCHHHHHHHHHH
T ss_pred             eEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhcc---------ccEEEEEeecccchHHHHHHHHH
Confidence            4556666543221   23556789999999876665554444432222         33889999998732111 01111


Q ss_pred             HHHHHH-------hcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        233 GQALAQ-------SWGCPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       233 ~~~~~~-------~~~~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      .+....       .+..+++.|||++|+|++++++.|.+...
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            111111       22357999999999999999999987543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.16  E-value=4.8e-11  Score=104.02  Aligned_cols=102  Identities=16%  Similarity=0.208  Sum_probs=62.1

Q ss_pred             EEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHH
Q psy10504        153 VLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLD  232 (286)
Q Consensus       153 ~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~  232 (286)
                      .+.|+.|.|.-.-.   ......+|.+++|.....++..+..+.-..++         +=++|+||+|+.+..+.. ...
T Consensus       145 d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~---------aDi~vvNKaD~~~~~~~~-~~~  211 (323)
T d2qm8a1         145 DVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIFEL---------ADMIAVNKADDGDGERRA-SAA  211 (323)
T ss_dssp             CEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHHHH---------CSEEEEECCSTTCCHHHH-HHH
T ss_pred             CeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhhhHhhh---------hheeeEeccccccchHHH-HHH
Confidence            46778888754322   23445699999999988876555443322222         339999999987332211 111


Q ss_pred             HHHHHH----------hcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504        233 GQALAQ----------SWGCPFIEASAKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       233 ~~~~~~----------~~~~~~~~vSa~~~~gv~~l~~~i~~~i~  267 (286)
                      ...+..          .+..+++.+||++|+|+++++++|.+...
T Consensus       212 ~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         212 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            111111          13468999999999999999999987654

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.07  E-value=5.2e-10  Score=96.31  Aligned_cols=85  Identities=19%  Similarity=0.192  Sum_probs=64.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCe---------------EEEEEEEeCCCcccc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKA---------------PCVLEILDTAGTEQF  165 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~DtpG~~~~  165 (286)
                      ..+||+++|.|+||||||++++++..  ..+.|+.||.+.....+.+.+.               ...++++|.||...-
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            45899999999999999999999754  4688999887766666666543               135889999984432


Q ss_pred             h-------hhhhhcccCccEEEEEEECCC
Q psy10504        166 A-------SMRDLYIKNGQGFVVVYSLTN  187 (286)
Q Consensus       166 ~-------~~~~~~~~~~d~vilv~d~~~  187 (286)
                      .       .....-++.||+++.|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence            1       123334588999999999865

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.02  E-value=6.3e-10  Score=94.88  Aligned_cols=83  Identities=19%  Similarity=0.195  Sum_probs=57.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeE---------------EEEEEEeCCCcccch-
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAP---------------CVLEILDTAGTEQFA-  166 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~DtpG~~~~~-  166 (286)
                      .+||+++|.|+||||||++++..... ...|+.|+.+.....+.+++.+               ..++++|+||.-.-. 
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            37999999999999999999998654 4677777765555555554321               248899999954322 


Q ss_pred             ---hhhh---hcccCccEEEEEEECC
Q psy10504        167 ---SMRD---LYIKNGQGFVVVYSLT  186 (286)
Q Consensus       167 ---~~~~---~~~~~~d~vilv~d~~  186 (286)
                         .+..   ..++.||+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence               2333   3457899999999874

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=2.4e-09  Score=91.89  Aligned_cols=116  Identities=16%  Similarity=0.173  Sum_probs=73.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECC---------------------------------
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDK---------------------------------  149 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~---------------------------------  149 (286)
                      .++|+|+|+.++|||||+|+|++..+ +....+++.......+....                                 
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            35899999999999999999999776 44454554322222211100                                 


Q ss_pred             -----------------eEEEEEEEeCCCcccc-------------hhhhhhcccCcc-EEEEEEECCCcccHHHHHHHH
Q psy10504        150 -----------------APCVLEILDTAGTEQF-------------ASMRDLYIKNGQ-GFVVVYSLTNHHTFQDIKQMK  198 (286)
Q Consensus       150 -----------------~~~~l~l~DtpG~~~~-------------~~~~~~~~~~~d-~vilv~d~~~~~s~~~~~~~~  198 (286)
                                       ....+.++|+||....             ..+...|+...+ ++++|.++....+.+....+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                             0013789999994321             234455666666 556666676655555544444


Q ss_pred             HHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        199 ELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       199 ~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                      ..+.    ....++++|+||+|..+
T Consensus       186 ~~~~----~~~~r~i~Vltk~D~~~  206 (299)
T d2akab1         186 KEVD----PQGQRTIGVITKLDLMD  206 (299)
T ss_dssp             HHHC----TTCSSEEEEEECGGGSC
T ss_pred             HHhC----cCCCceeeEEecccccc
Confidence            4332    23568999999999874

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.81  E-value=6.9e-09  Score=89.33  Aligned_cols=114  Identities=22%  Similarity=0.241  Sum_probs=67.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEE-------------------------------------
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIE-------------------------------------  146 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~-------------------------------------  146 (286)
                      ++|+|+|+.++|||||+|+|++..+ +....+++.......+.                                     
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  104 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR  104 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHHH
Confidence            5899999999999999999999765 33333333211111110                                     


Q ss_pred             ----------------------ECCeEEEEEEEeCCCccc-------------chhhhhhcccCccEEEEEE-ECCCccc
Q psy10504        147 ----------------------VDKAPCVLEILDTAGTEQ-------------FASMRDLYIKNGQGFVVVY-SLTNHHT  190 (286)
Q Consensus       147 ----------------------~~~~~~~l~l~DtpG~~~-------------~~~~~~~~~~~~d~vilv~-d~~~~~s  190 (286)
                                            ... ...+.++||||...             ...+...|+..++.+++++ ++.....
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~  183 (306)
T d1jwyb_         105 DTDRMTGKNKGISAQPINLKIYSPH-VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA  183 (306)
T ss_dssp             HCC--------CCCCCEEEEEEETT-SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred             HHHHhcCCCCcccccceEEEecCCC-CCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccccc
Confidence                                  011 12478999999542             2235667888898766665 5444433


Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504        191 FQDIKQMKELITRVKGSERVPILLVANKLDLAS  223 (286)
Q Consensus       191 ~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  223 (286)
                      .+....+...+    .....++++|+||+|..+
T Consensus       184 ~~~~~~~~~~~----~~~~~r~i~Vitk~D~~~  212 (306)
T d1jwyb_         184 NSDALQLAKEV----DPEGKRTIGVITKLDLMD  212 (306)
T ss_dssp             TCSHHHHHHHH----CSSCSSEEEEEECTTSSC
T ss_pred             ccHHHHHHHHh----CcCCCeEEEEEecccccc
Confidence            33333333332    223568999999999873

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.74  E-value=7.9e-09  Score=89.48  Aligned_cols=83  Identities=18%  Similarity=0.148  Sum_probs=44.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEE-E---------------------CCeEEEEEEEeCCC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIE-V---------------------DKAPCVLEILDTAG  161 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~-~---------------------~~~~~~l~l~DtpG  161 (286)
                      ++|+++|.||||||||+|+|.+... ...|+.||.+....... .                     ......++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            4899999999999999999998543 56677676543222111 0                     01224589999999


Q ss_pred             cccch----hhhh---hcccCccEEEEEEECCC
Q psy10504        162 TEQFA----SMRD---LYIKNGQGFVVVYSLTN  187 (286)
Q Consensus       162 ~~~~~----~~~~---~~~~~~d~vilv~d~~~  187 (286)
                      .-...    .+..   ..++.+|+++.|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            53321    1222   33578999999999864

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.19  E-value=8.3e-07  Score=74.83  Aligned_cols=58  Identities=24%  Similarity=0.321  Sum_probs=36.2

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE  163 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~  163 (286)
                      ....++|+|+|.||||||||+|+|.+...  +...++++.+...  +.. +..  +.++||||.-
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~--i~~-~~~--~~l~DTPGi~  168 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKE--LELLDTPGIL  168 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTT--EEEEECCCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceE--EEC-CCC--eEEecCCCcc
Confidence            34679999999999999999999998653  3444555543322  222 333  7899999954

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.99  E-value=6.7e-06  Score=66.83  Aligned_cols=84  Identities=19%  Similarity=0.250  Sum_probs=58.5

Q ss_pred             cccCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH--hcCCCEEEEe
Q psy10504        172 YIKNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ--SWGCPFIEAS  248 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~vS  248 (286)
                      ...+.|.+++|+++.+|. +..-+..++.....    .++|.+||+||+|+.+. ..  .........  ..+.+++.+|
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~-~~--~~~~~~~~~~~~~~~~v~~vS   79 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDE-DD--LRKVRELEEIYSGLYPIVKTS   79 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCH-HH--HHHHHHHHHHHTTTSCEEECC
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCH-HH--HHHHHHhhcccccceeEEEec
Confidence            456889999999998865 34445555555444    28899999999999721 11  122222233  2347899999


Q ss_pred             CCCCCcHHHHHHHH
Q psy10504        249 AKNKTNVNEMFAEI  262 (286)
Q Consensus       249 a~~~~gv~~l~~~i  262 (286)
                      |+++.|++++.+.+
T Consensus        80 a~~~~g~~~L~~~l   93 (225)
T d1u0la2          80 AKTGMGIEELKEYL   93 (225)
T ss_dssp             TTTCTTHHHHHHHH
T ss_pred             cccchhHhhHHHHh
Confidence            99999999998766

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.95  E-value=2.3e-06  Score=69.68  Aligned_cols=57  Identities=23%  Similarity=0.215  Sum_probs=36.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCc---------cCCCccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEK---------YDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA  166 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~  166 (286)
                      -..+++|++|||||||+|+|.++.....         -..|+  .....+.+++..   .++||||...+.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTT--t~~~l~~l~~gg---~iiDTPG~r~~~  161 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTT--TTAQLLKFDFGG---YVVDTPGFANLE  161 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CC--CSCCEEECTTSC---EEESSCSSTTCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccc--cceeEEEECCCc---EEEeCCcccccc
Confidence            4678999999999999999987532211         11122  223334555443   379999976554

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.89  E-value=5.3e-06  Score=69.69  Aligned_cols=89  Identities=15%  Similarity=0.054  Sum_probs=62.4

Q ss_pred             hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEe
Q psy10504        169 RDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEAS  248 (286)
Q Consensus       169 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vS  248 (286)
                      ....+..+|++++|+|+.+|.+..+-.  +..+.     .++|+|+|+||+|+.+  +.. ........+..+..++.+|
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~~~--l~~~~-----~~Kp~IlVlNK~DLv~--~~~-~~~w~~~f~~~~~~~i~is   78 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRNPM--IEDIL-----KNKPRIMLLNKADKAD--AAV-TQQWKEHFENQGIRSLSIN   78 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCHH--HHHHC-----SSSCEEEEEECGGGSC--HHH-HHHHHHHHHTTTCCEEECC
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCCHH--HHHHH-----cCCCeEEEEECccCCc--hHH-HHHHHHHHHhcCCccceee
Confidence            345688999999999999987665421  22222     2789999999999972  111 2223333445568899999


Q ss_pred             CCCCCcHHHHHHHHHHHhh
Q psy10504        249 AKNKTNVNEMFAEIVREMN  267 (286)
Q Consensus       249 a~~~~gv~~l~~~i~~~i~  267 (286)
                      ++++.|..++.+.+.+.+.
T Consensus        79 a~~~~~~~~~~~~~~~~l~   97 (273)
T d1puja_          79 SVNGQGLNQIVPASKEILQ   97 (273)
T ss_dssp             TTTCTTGGGHHHHHHHHHH
T ss_pred             cccCCCccccchhhhhhhh
Confidence            9999998888777766554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.84  E-value=2.5e-06  Score=69.65  Aligned_cols=56  Identities=23%  Similarity=0.247  Sum_probs=33.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCC---------ccCCCccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFME---------KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA  166 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~  166 (286)
                      -..+++|++|||||||+|+|.++....         .-..|++.  ...+..++..    ++||||...+.
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~--~~l~~~~gg~----iiDTPG~r~~~  162 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRH--VELIHTSGGL----VADTPGFSSLE  162 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-------------------CCC--CCEEEETTEE----EESSCSCSSCC
T ss_pred             ceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeee--EEEEecCCCE----EEECCcccccc
Confidence            356799999999999999999853221         11112221  1223455543    68999987655

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.83  E-value=1.4e-05  Score=64.47  Aligned_cols=92  Identities=18%  Similarity=0.104  Sum_probs=54.3

Q ss_pred             EEEEEeCCCcccchhh----hhhcc--------cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCC
Q psy10504        153 VLEILDTAGTEQFASM----RDLYI--------KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD  220 (286)
Q Consensus       153 ~l~l~DtpG~~~~~~~----~~~~~--------~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~D  220 (286)
                      .+.|+||+|-..++..    ...+.        ...+-.++|+|+...  .+.+.+........    + +--+++||.|
T Consensus        95 d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~----~-~~~lI~TKlD  167 (213)
T d1vmaa2          95 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV----N-VTGIILTKLD  167 (213)
T ss_dssp             SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS----C-CCEEEEECGG
T ss_pred             CEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhcccc----C-CceEEEeccc
Confidence            4789999995433321    11111        114678999998653  33344333333321    1 3357789999


Q ss_pred             CCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504        221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       221 l~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l  258 (286)
                      ..  .   ..-.........+.|+..++  +|++++++
T Consensus       168 e~--~---~~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         168 GT--A---KGGITLAIARELGIPIKFIG--VGEKAEDL  198 (213)
T ss_dssp             GC--S---CTTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             CC--C---cccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            64  1   12345667778889998888  67777553

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.78  E-value=4.4e-05  Score=58.88  Aligned_cols=22  Identities=36%  Similarity=0.732  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +||+|+|++|+|||||++.+.+
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            4899999999999999999987

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.72  E-value=4.3e-05  Score=61.44  Aligned_cols=92  Identities=11%  Similarity=0.099  Sum_probs=54.6

Q ss_pred             EEEEEeCCCcccchh--h----hhhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC
Q psy10504        153 VLEILDTAGTEQFAS--M----RDLY--IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH  224 (286)
Q Consensus       153 ~l~l~DtpG~~~~~~--~----~~~~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~  224 (286)
                      .+.++||+|-..+..  .    ...+  .-..+-+++|+|++...  +.+..........    + +--+++||.|..  
T Consensus        96 d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~~~~~~----~-~~~lI~TKlDet--  166 (211)
T d1j8yf2          96 EIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ--KAYDLASKFNQAS----K-IGTIIITKMDGT--  166 (211)
T ss_dssp             SEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHHC----T-TEEEEEECTTSC--
T ss_pred             ceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCc--chHHHHhhhhccc----C-cceEEEecccCC--
Confidence            478999999543331  1    1111  12356788999987643  2233322222221    2 234669999965  


Q ss_pred             CCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504        225 QREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l  258 (286)
                         ...-.........+.|+..++  +|++++++
T Consensus       167 ---~~~G~~l~~~~~~~lPi~~it--~Gq~v~DL  195 (211)
T d1j8yf2         167 ---AKGGGALSAVAATGATIKFIG--TGEKIDEL  195 (211)
T ss_dssp             ---SCHHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             ---CcccHHHHHHHHHCcCEEEEe--CCCCcccC
Confidence               224556677788899998888  67777553

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.67  E-value=2.1e-05  Score=63.13  Aligned_cols=92  Identities=14%  Similarity=0.095  Sum_probs=53.0

Q ss_pred             EEEEEeCCCcccchhh----hhhcc--------cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCC
Q psy10504        153 VLEILDTAGTEQFASM----RDLYI--------KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD  220 (286)
Q Consensus       153 ~l~l~DtpG~~~~~~~----~~~~~--------~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~D  220 (286)
                      .+.++||+|...+...    ...+.        ...+-+++|+|++...  +.+.+........    + +--+++||.|
T Consensus        90 d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~----~-~~~lI~TKlD  162 (207)
T d1okkd2          90 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAV----G-LTGVIVTKLD  162 (207)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHH----C-CSEEEEECTT
T ss_pred             CEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCc--hHHHHHHHhhhcc----C-CceEEEeccC
Confidence            4789999995433321    11111        2346789999987653  3333333333322    2 2256789999


Q ss_pred             CCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504        221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM  258 (286)
Q Consensus       221 l~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l  258 (286)
                      ...  +   .-.........+.|+..++  +|++.+++
T Consensus       163 et~--~---~G~~l~~~~~~~~Pi~~i~--~Gq~p~Dl  193 (207)
T d1okkd2         163 GTA--K---GGVLIPIVRTLKVPIKFVG--VGEGPDDL  193 (207)
T ss_dssp             SSC--C---CTTHHHHHHHHCCCEEEEE--CSSSTTCE
T ss_pred             CCC--C---ccHHHHHHHHHCCCEEEEe--CCCChHhC
Confidence            651  1   1234556777889988887  56665543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=7.5e-05  Score=60.47  Aligned_cols=23  Identities=22%  Similarity=0.307  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +-.+|.|.-|||||||+++++..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            45789999999999999999874

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.56  E-value=8.7e-06  Score=66.37  Aligned_cols=87  Identities=15%  Similarity=0.176  Sum_probs=58.8

Q ss_pred             cccCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCC-HHHHHHHHHhcCCCEEEEeC
Q psy10504        172 YIKNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVP-TLDGQALAQSWGCPFIEASA  249 (286)
Q Consensus       172 ~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~vSa  249 (286)
                      -..+.|.+++|+++.+|. +...+..++.....    .+++.+||+||+|+.++..... ...........|.+++.+||
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa   82 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSS   82 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCH
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeec
Confidence            346889999999998864 44555555444333    3889999999999973211100 11122234456899999999


Q ss_pred             CCCCcHHHHHHHH
Q psy10504        250 KNKTNVNEMFAEI  262 (286)
Q Consensus       250 ~~~~gv~~l~~~i  262 (286)
                      +++.|++++.+++
T Consensus        83 ~~~~gl~~L~~~l   95 (231)
T d1t9ha2          83 KDQDSLADIIPHF   95 (231)
T ss_dssp             HHHTTCTTTGGGG
T ss_pred             CChhHHHHHHHhh
Confidence            9999998886654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=0.00015  Score=58.16  Aligned_cols=91  Identities=19%  Similarity=0.135  Sum_probs=53.2

Q ss_pred             EEEEEeCCCcccchhh----hh---hccc-----CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCC
Q psy10504        153 VLEILDTAGTEQFASM----RD---LYIK-----NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD  220 (286)
Q Consensus       153 ~l~l~DtpG~~~~~~~----~~---~~~~-----~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~D  220 (286)
                      .+.++||+|-...+..    ..   ...+     ..+-+++|+|+....  +.+.+........    + +--+++||.|
T Consensus        93 d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~----~-~~~lIlTKlD  165 (211)
T d2qy9a2          93 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAV----G-LTGITLTKLD  165 (211)
T ss_dssp             SEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTH--HHHHHHHHHHHHS----C-CCEEEEECCT
T ss_pred             CEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCc--chHHHHhhhhhcc----C-CceEEEeecC
Confidence            3789999994322221    11   1111     246789999987542  2333332332221    1 3357789999


Q ss_pred             CCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       221 l~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                      ...  +   .-.........+.|+..++  +|+++++
T Consensus       166 e~~--~---~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         166 GTA--K---GGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TCT--T---TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCC--C---ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            751  1   2345667778899998888  7777754

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.25  E-value=0.00055  Score=54.55  Aligned_cols=91  Identities=16%  Similarity=0.075  Sum_probs=48.9

Q ss_pred             EEEEEeCCCcccchhhh----hhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC
Q psy10504        153 VLEILDTAGTEQFASMR----DLY--IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR  226 (286)
Q Consensus       153 ~l~l~DtpG~~~~~~~~----~~~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~  226 (286)
                      .+.++||+|-...+...    ..+  ....+-+++|.|+..+.  +.+.. .....+..   + .-=+++||.|..  . 
T Consensus        94 d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~--~~~~~-~~~f~~~~---~-~~~~I~TKlDe~--~-  163 (207)
T d1ls1a2          94 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSV-ARAFDEKV---G-VTGLVLTKLDGD--A-  163 (207)
T ss_dssp             CEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH--HHHHH-HHHHHHHT---C-CCEEEEECGGGC--S-
T ss_pred             cceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccch--hHHHH-HHHHHhhC---C-CCeeEEeecCcc--c-
Confidence            47899999954433311    111  23467899999987653  22222 12222211   1 224778999964  1 


Q ss_pred             CCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504        227 EVPTLDGQALAQSWGCPFIEASAKNKTNVNE  257 (286)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~  257 (286)
                        ..-.........+.|+..++  .|+..++
T Consensus       164 --~~G~~l~~~~~~~~Pi~~i~--~Gq~ped  190 (207)
T d1ls1a2         164 --RGGAALSARHVTGKPIYFAG--VSEKPEG  190 (207)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEC--------C
T ss_pred             --cchHHHHHHHHHCCCEEEEe--CCCChhh
Confidence              13445666778889987776  4554443

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.92  E-value=0.00022  Score=54.65  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=21.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .-+|+|.|++|+|||||+++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999976

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.92  E-value=0.00024  Score=54.21  Aligned_cols=25  Identities=16%  Similarity=0.484  Sum_probs=22.6

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ++..+|+|.|++||||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4678999999999999999999975

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.78  E-value=0.00028  Score=53.55  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.6

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .++|+++|++||||||+.++|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999865

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.00034  Score=53.01  Aligned_cols=22  Identities=18%  Similarity=0.289  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +-++|+|.+|||||||++++..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3589999999999999999986

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.71  E-value=0.00043  Score=53.97  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=22.2

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ++.++|+++|+|||||||....|..
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999998875

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.64  E-value=0.00058  Score=50.82  Aligned_cols=20  Identities=30%  Similarity=0.697  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10504        107 VVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~  126 (286)
                      |++.|.+||||||++++|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77899999999999999865

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.40  E-value=0.00094  Score=52.20  Aligned_cols=24  Identities=21%  Similarity=0.558  Sum_probs=22.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +.++|+|+|+|||||||+...|..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHH
Confidence            668999999999999999999876

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0018  Score=53.85  Aligned_cols=60  Identities=20%  Similarity=0.157  Sum_probs=37.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCcCC--Cc--cCCCccceEEEEEE-ECCeEEEEEEEeCCCcc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGCFM--EK--YDPTIEDFYRKEIE-VDKAPCVLEILDTAGTE  163 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~--~~--~~~t~~~~~~~~~~-~~~~~~~l~l~DtpG~~  163 (286)
                      -.-|.++|+.++|||+|+|.|.+..+.  ..  ..+++......... ..+....+.++||.|..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccc
Confidence            346889999999999999999985532  11  12222222222222 23344457889999964

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.31  E-value=0.001  Score=51.12  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ++|+|+|+|||||||+...|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988865

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.29  E-value=0.00075  Score=52.49  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=20.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +++|+|+|++||||||+...|..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988865

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.23  E-value=0.0012  Score=50.90  Aligned_cols=22  Identities=32%  Similarity=0.673  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ++|+|+|+|||||||+...|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999875

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.23  E-value=0.0011  Score=49.86  Aligned_cols=20  Identities=30%  Similarity=0.586  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10504        107 VVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~  126 (286)
                      |++.|++||||||+.++|..
T Consensus         5 I~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999975

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.18  E-value=0.0015  Score=50.87  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=20.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ++..|+|+|+|||||||+..+|..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999876

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.18  E-value=0.0012  Score=50.17  Aligned_cols=20  Identities=30%  Similarity=0.423  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10504        107 VVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~  126 (286)
                      +.|+|.+|||||||++++..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999999976

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.16  E-value=0.0013  Score=50.70  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ++|+|+|+|||||||+...|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988876

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.0016  Score=50.16  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=20.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .++|+|+|+|||||||+...|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999876

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0014  Score=48.72  Aligned_cols=21  Identities=29%  Similarity=0.558  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0019  Score=50.16  Aligned_cols=23  Identities=35%  Similarity=0.547  Sum_probs=20.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ++.|+|+|+|||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999988865

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0015  Score=50.22  Aligned_cols=22  Identities=18%  Similarity=0.421  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ++|+|+|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988865

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.03  E-value=0.0024  Score=48.31  Aligned_cols=25  Identities=20%  Similarity=0.333  Sum_probs=21.6

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .+.+.|.++|.+||||||+.+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3568899999999999999888865

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.02  E-value=0.0012  Score=50.15  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ++|+++|.+||||||+.+.+..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999888854

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.99  E-value=0.002  Score=50.33  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=19.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .-|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999975

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.98  E-value=0.0029  Score=48.55  Aligned_cols=24  Identities=29%  Similarity=0.372  Sum_probs=20.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .+.-|+++|.+||||||+..++..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            445789999999999999999864

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.0027  Score=49.37  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=21.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ....|+|+|+|||||||+...|..
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999876

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.002  Score=48.92  Aligned_cols=21  Identities=33%  Similarity=0.504  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .|.|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999999886

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.0023  Score=52.02  Aligned_cols=24  Identities=29%  Similarity=0.288  Sum_probs=21.1

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .=+|+|+|++|+|||||++.+.+-
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc
Confidence            347999999999999999998874

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.75  E-value=0.0024  Score=48.58  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -|+|.|.+||||||+++.|..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999998854

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.71  E-value=0.0037  Score=48.07  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=21.3

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .++-|+|-|++|||||||.++|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457799999999999999999875

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.67  E-value=0.0027  Score=50.10  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|+.|+|||||++.+.+-
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            5789999999999999999774

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.66  E-value=0.047  Score=44.14  Aligned_cols=88  Identities=16%  Similarity=0.111  Sum_probs=53.6

Q ss_pred             EEEEEEeCCCcccchhh-hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcE-EEEEeCCCCCCCCCCCC
Q psy10504        152 CVLEILDTAGTEQFASM-RDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPI-LLVANKLDLASHQREVP  229 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~-~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ivv~nK~Dl~~~~~~~~  229 (286)
                      +.+.++|||+....... .......+|.++++... +..++.........+.......+.++ -++.|+.+...     .
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~-----~  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN-----E  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC-----C
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC-----c
Confidence            45889999875432222 22233457888877766 45667666666666665544445554 37789987652     2


Q ss_pred             HHHHHHHHHhcCCCEE
Q psy10504        230 TLDGQALAQSWGCPFI  245 (286)
Q Consensus       230 ~~~~~~~~~~~~~~~~  245 (286)
                      .+..+.+.+..+.+++
T Consensus       190 ~~~~~~~~~~~~~~~~  205 (269)
T d1cp2a_         190 YELLDAFAKELGSQLI  205 (269)
T ss_dssp             HHHHHHHHHHHTCCEE
T ss_pred             cchhhhhHhhcCCeEE
Confidence            3456667777776654

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.0029  Score=49.03  Aligned_cols=21  Identities=33%  Similarity=0.619  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~  127 (286)
                      |+|+|++|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999763

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.63  E-value=0.013  Score=44.17  Aligned_cols=25  Identities=32%  Similarity=0.513  Sum_probs=21.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +..-|++-|+-|+|||||++.++..
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhh
Confidence            3457889999999999999999874

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0032  Score=47.44  Aligned_cols=21  Identities=33%  Similarity=0.539  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      =++++|.+||||||+.+.|..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            466899999999999999876

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.58  E-value=0.0029  Score=48.72  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~  127 (286)
                      |+|+|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999763

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.58  E-value=0.003  Score=47.71  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -|++.|++||||||+.+.|...
T Consensus         6 iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999998763

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.58  E-value=0.0034  Score=49.61  Aligned_cols=25  Identities=20%  Similarity=0.417  Sum_probs=21.9

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      |+.++|+|-|++||||||....|..
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999888876

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.57  E-value=0.0033  Score=51.11  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=20.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .=.++|+|+.|+|||||++.+.+
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999876

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0023  Score=49.29  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=21.0

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +...|.++|.+||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999999999865

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.0035  Score=50.57  Aligned_cols=22  Identities=36%  Similarity=0.437  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -++++|+.|||||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5899999999999999988773

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.49  E-value=0.0033  Score=51.48  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =+++|+|++|+|||||++.+.+-
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhcc
Confidence            47999999999999999988763

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0036  Score=51.15  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=20.9

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .=.++|+|+.|+|||||++.+.+-
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcc
Confidence            347899999999999999988763

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.46  E-value=0.0034  Score=50.56  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -++++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            5899999999999999977663

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.43  E-value=0.0033  Score=47.47  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +|+++|.+||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999888855

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.43  E-value=0.0035  Score=53.23  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .+|+|.|.+|+|||||+++++..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            46999999999999999999864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0039  Score=48.07  Aligned_cols=20  Identities=30%  Similarity=0.715  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10504        107 VVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~  126 (286)
                      |+|+|++|+|||||+++|+.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999985

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.39  E-value=0.0041  Score=50.37  Aligned_cols=22  Identities=32%  Similarity=0.395  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -++++|+.|+|||||++.+.+-
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            4679999999999999999874

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.35  E-value=0.0039  Score=51.79  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCChHHHHHHHHhCC
Confidence            46999999999999999999873

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.32  E-value=0.0044  Score=48.18  Aligned_cols=20  Identities=40%  Similarity=0.634  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10504        107 VVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~  126 (286)
                      |+|+|++|||||||.++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999865

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.28  E-value=0.0046  Score=50.03  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -++++|+.|+|||||++.+.+-
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            5899999999999999998874

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.27  E-value=0.005  Score=46.28  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -|+|.|.+||||||+.+.|...
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3667799999999999998773

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.23  E-value=0.0038  Score=50.20  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -++++|+.|+|||||++.+.+-
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5899999999999999999874

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0063  Score=47.82  Aligned_cols=23  Identities=30%  Similarity=0.458  Sum_probs=20.4

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ++-|+|.|.+|||||||.++|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            47799999999999999988854

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.14  E-value=0.0053  Score=49.72  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5899999999999999998874

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.12  E-value=0.0055  Score=48.39  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =|+|+|++|||||||+++|+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999863

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.10  E-value=0.0055  Score=46.50  Aligned_cols=20  Identities=15%  Similarity=0.493  Sum_probs=17.8

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10504        107 VVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~  126 (286)
                      |+++|.+||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999888854

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.0041  Score=50.17  Aligned_cols=22  Identities=27%  Similarity=0.463  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      =-++++|+.|+|||||++.+.+
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            3589999999999999999987

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.06  E-value=0.0054  Score=49.73  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -++++|+.|+|||||++.+.+-
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5889999999999999999874

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.005  Score=49.89  Aligned_cols=23  Identities=30%  Similarity=0.218  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =-++++|++|||||||++.+.+-
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHcCC
Confidence            35899999999999999998773

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.99  E-value=0.0076  Score=48.80  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -|++.|+||+|||||..++.+.
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999763

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.97  E-value=0.0053  Score=47.62  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=19.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .-|+|+|+|||||||+..+|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999999876

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.97  E-value=0.0039  Score=51.05  Aligned_cols=23  Identities=30%  Similarity=0.304  Sum_probs=20.0

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .=+++|+|++|+|||||++.+.+
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHh
Confidence            34799999999999999987765

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.90  E-value=0.0061  Score=48.79  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .+++.|+||+||||+++.+.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999763

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=94.85  E-value=0.0068  Score=49.03  Aligned_cols=22  Identities=18%  Similarity=0.243  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -++++|+.|+|||||++.+.+-
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999875

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=94.83  E-value=0.0061  Score=46.38  Aligned_cols=21  Identities=38%  Similarity=0.604  Sum_probs=17.6

Q ss_pred             EE-EEECCCCCcHHHHHHHHhc
Q psy10504        106 KV-VVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV-~ivG~~~~GKTSLi~~l~~  126 (286)
                      || +|.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            44 5679999999999998864

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=94.74  E-value=0.0071  Score=48.32  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .+++.|+||+||||+++.+...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            4899999999999999998763

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.72  E-value=0.0088  Score=46.20  Aligned_cols=25  Identities=28%  Similarity=0.486  Sum_probs=22.1

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .+++-|+|-|..||||||+++.|..
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999876

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.69  E-value=0.0078  Score=49.27  Aligned_cols=23  Identities=26%  Similarity=0.250  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcC
Confidence            36899999999999999999763

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.68  E-value=0.0077  Score=49.19  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -++++|+.|+|||||++.+.+-
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHCC
Confidence            4789999999999999999874

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.66  E-value=0.0051  Score=49.86  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =.++++|+.|+|||||++.+.+-
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcC
Confidence            36899999999999999999874

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.0096  Score=46.50  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGC  128 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~  128 (286)
                      -+++++|++|+|||+++..|....
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHH
Confidence            468999999999999998887643

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.24  E-value=0.018  Score=46.18  Aligned_cols=23  Identities=17%  Similarity=0.325  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ..+++.|++|+||||+++.+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999873

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.10  E-value=0.014  Score=44.79  Aligned_cols=25  Identities=24%  Similarity=0.280  Sum_probs=21.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .++-|+|.|.+||||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            3577999999999999999988653

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.00  E-value=0.015  Score=47.71  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGC  128 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~  128 (286)
                      -+++++|++|+|||+++..+....
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHH
Confidence            478999999999999998887643

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.93  E-value=0.014  Score=46.32  Aligned_cols=22  Identities=23%  Similarity=0.493  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .+++.|++|+||||+++.+...
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999988763

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.88  E-value=0.014  Score=48.99  Aligned_cols=21  Identities=24%  Similarity=0.673  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .++++|+||+|||.|.+++..
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhh
Confidence            478999999999999999976

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.88  E-value=0.018  Score=46.19  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ..++|.|++|+|||++++.+...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.86  E-value=0.013  Score=47.06  Aligned_cols=21  Identities=29%  Similarity=0.320  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            478999999999999998875

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.80  E-value=0.022  Score=46.08  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..|++.|++|+|||++++++..
T Consensus        41 ~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhh
Confidence            4699999999999999999976

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.67  E-value=0.023  Score=44.72  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=21.7

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .+..-|.+.|.+|||||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999988864

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=93.66  E-value=0.017  Score=45.18  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=19.1

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +-|+|.|+|||||||+...|..
T Consensus         4 piI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3678889999999999888876

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=93.51  E-value=0.025  Score=47.31  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=21.5

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..++-|+|.|.+||||||+.+.|..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            4668999999999999999887754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.48  E-value=0.016  Score=46.84  Aligned_cols=21  Identities=29%  Similarity=0.362  Sum_probs=17.8

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +.+.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999998864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.16  E-value=0.022  Score=45.07  Aligned_cols=22  Identities=18%  Similarity=0.448  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .+++.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            3899999999999999998763

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=93.15  E-value=0.022  Score=46.09  Aligned_cols=21  Identities=33%  Similarity=0.582  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -|++.|++|+|||++++++..
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            489999999999999999986

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.06  E-value=0.023  Score=43.99  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999988864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.95  E-value=0.02  Score=45.78  Aligned_cols=22  Identities=18%  Similarity=0.510  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .+++.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999988764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.89  E-value=0.025  Score=44.56  Aligned_cols=21  Identities=19%  Similarity=0.428  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .+++.|++|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            388999999999999988865

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.70  E-value=0.027  Score=44.34  Aligned_cols=22  Identities=23%  Similarity=0.472  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .+++.|++|+||||++..+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            3889999999999999999864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.61  E-value=0.029  Score=45.56  Aligned_cols=22  Identities=18%  Similarity=0.443  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .+++.|++|+|||++++++...
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            5899999999999999999873

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=92.45  E-value=0.031  Score=45.40  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .+++.|+||+|||++++++..
T Consensus        47 ~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHH
Confidence            589999999999999999986

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.045  Score=41.89  Aligned_cols=25  Identities=16%  Similarity=0.238  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCF  129 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~  129 (286)
                      --+.|.|++|+|||+|+..+.....
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999988876443

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.75  E-value=0.042  Score=42.75  Aligned_cols=20  Identities=30%  Similarity=0.463  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10504        107 VVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~  126 (286)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999988875

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=91.73  E-value=0.012  Score=44.87  Aligned_cols=20  Identities=35%  Similarity=0.606  Sum_probs=17.5

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10504        107 VVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~  126 (286)
                      .+|+|+.|+||||++.++.-
T Consensus        27 tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999863

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.71  E-value=0.026  Score=48.78  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=18.3

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -+++++|++|||||+++..|..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHH
Confidence            3568999999999999876665

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=91.66  E-value=0.07  Score=41.40  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +-|+|.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999988865

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=91.57  E-value=0.057  Score=42.06  Aligned_cols=23  Identities=30%  Similarity=0.449  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcC
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +-|+|.|..||||||+.+.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            56889999999999999988653

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=91.55  E-value=0.038  Score=48.59  Aligned_cols=22  Identities=23%  Similarity=0.593  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -+|+++|++|||||-|.++|..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999976

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.53  E-value=0.076  Score=43.75  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=19.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHh
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFV  125 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~  125 (286)
                      +++=|+|-|.+|||||||...+.
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHH
Confidence            45889999999999999977663

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.45  E-value=0.042  Score=44.77  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -|++.|++|+|||+|++++...
T Consensus        43 giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcchhHHHHHHHH
Confidence            4899999999999999999874

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.22  E-value=0.034  Score=43.91  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .|+|-|..||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998876

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.97  E-value=0.028  Score=46.45  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=17.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +++-|+|.|.+||||||+.++|..
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHH
Confidence            345699999999999999987754

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.85  E-value=0.054  Score=42.41  Aligned_cols=20  Identities=30%  Similarity=0.466  Sum_probs=17.1

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10504        107 VVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~  126 (286)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77789999999998877755

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=90.75  E-value=0.075  Score=40.49  Aligned_cols=24  Identities=33%  Similarity=0.612  Sum_probs=20.7

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ..-|+|.|++|+||||+.-.|...
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            356899999999999999888764

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=90.53  E-value=0.073  Score=45.43  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=20.7

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      ..--+++.|+||+|||++...+.+
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHH
Confidence            334789999999999999998876

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.47  E-value=0.06  Score=42.20  Aligned_cols=24  Identities=25%  Similarity=0.313  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGC  128 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~  128 (286)
                      --+.|.|++|+|||+|...+....
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            357899999999999999887643

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.07  E-value=0.072  Score=42.10  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=20.5

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcCc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSGC  128 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~~  128 (286)
                      .--++|.|++|+|||+|.-.+....
T Consensus        36 G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          36 QAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3457899999999999988887543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=89.96  E-value=0.092  Score=40.02  Aligned_cols=24  Identities=25%  Similarity=0.544  Sum_probs=20.8

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ..-|+|.|++|+||||+.-.|...
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            356899999999999999998864

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=89.83  E-value=0.042  Score=46.13  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .|++.|++|+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999998864

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.50  E-value=0.13  Score=42.82  Aligned_cols=21  Identities=38%  Similarity=0.629  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .++++|++|+|||.|...+..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            588999999999999998875

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.42  E-value=0.088  Score=42.96  Aligned_cols=22  Identities=36%  Similarity=0.560  Sum_probs=19.4

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .-|+|.|..|+|||||+..+.+
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998865

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.25  E-value=0.093  Score=41.39  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            378999999999999999976

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.23  E-value=0.059  Score=44.19  Aligned_cols=18  Identities=28%  Similarity=0.521  Sum_probs=16.4

Q ss_pred             EEECCCCCcHHHHHHHHh
Q psy10504        108 VVLGSGGVGKSALTVQFV  125 (286)
Q Consensus       108 ~ivG~~~~GKTSLi~~l~  125 (286)
                      +++|+.|+||||+++++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            699999999999998883

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=89.10  E-value=0.11  Score=39.32  Aligned_cols=25  Identities=24%  Similarity=0.529  Sum_probs=21.2

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      ...-|+|.|++|+||||+.-.+...
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            3457999999999999999888764

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=88.99  E-value=0.1  Score=41.14  Aligned_cols=24  Identities=29%  Similarity=0.560  Sum_probs=20.2

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .--++|.|++|+|||+|+.++..+
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            345789999999999999888764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=88.95  E-value=0.099  Score=40.86  Aligned_cols=24  Identities=21%  Similarity=0.108  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGC  128 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~  128 (286)
                      --+.|.|++|+|||+|...+..+.
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH
Confidence            457899999999999998887643

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.82  E-value=0.097  Score=44.63  Aligned_cols=22  Identities=27%  Similarity=0.554  Sum_probs=18.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHh
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFV  125 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~  125 (286)
                      ..+. +|+|+.|+|||+++.++.
T Consensus        25 ~~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEE-EEECSTTSSHHHHHHHHH
T ss_pred             CCEE-EEECCCCCCHHHHHHHHH
Confidence            3454 488999999999999984

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=88.37  E-value=0.09  Score=44.24  Aligned_cols=27  Identities=22%  Similarity=0.466  Sum_probs=23.7

Q ss_pred             CcceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        101 TMREFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      .+..++|+|=|..|+||||+++.|...
T Consensus         2 ~m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           2 KMGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             CccceEEEEECCCCCCHHHHHHHHHHH
Confidence            356789999999999999999999864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=88.37  E-value=0.12  Score=44.09  Aligned_cols=22  Identities=18%  Similarity=0.504  Sum_probs=19.6

Q ss_pred             EEEEEECCCCCcHHHHHHHHhc
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -+++++|++|||||-|.++|..
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeeeCCCCccHHHHHHHHHh
Confidence            4599999999999999998864

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.08  E-value=0.12  Score=40.41  Aligned_cols=20  Identities=15%  Similarity=0.260  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10504        107 VVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~  126 (286)
                      |+|=|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            88999999999999888864

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.03  E-value=0.14  Score=40.24  Aligned_cols=25  Identities=16%  Similarity=0.118  Sum_probs=20.9

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +.--+.|.|++|+|||+|...+...
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3446889999999999999988764

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=87.99  E-value=0.81  Score=36.74  Aligned_cols=75  Identities=16%  Similarity=0.192  Sum_probs=42.5

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      --+.+.|++++|||+|+-.++.....                 .+..  ..++||-+.-.........+. .|-+ +++.
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~~q~-----------------~g~~--~vyidtE~~~~~~~a~~~Gvd-~d~v-~~~~  113 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAAAQR-----------------EGKT--CAFIDAEHALDPIYARKLGVD-IDNL-LCSQ  113 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHH-----------------TTCC--EEEEESSCCCCHHHHHHTTCC-GGGC-EEEC
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHc-----------------CCCE--EEEEccccccCHHHHHHhCCC-HHHE-EEec
Confidence            34679999999999998777664221                 1222  457898875433222233332 2322 2333


Q ss_pred             CCCcccHHHHHHHHHHHHH
Q psy10504        185 LTNHHTFQDIKQMKELITR  203 (286)
Q Consensus       185 ~~~~~s~~~~~~~~~~i~~  203 (286)
                         +.+.++...+...+.+
T Consensus       114 ---~~~~E~~~~~i~~l~~  129 (263)
T d1u94a1         114 ---PDTGEQALEICDALAR  129 (263)
T ss_dssp             ---CSSHHHHHHHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHHHh
Confidence               3455666666666554

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=87.76  E-value=0.13  Score=44.43  Aligned_cols=22  Identities=27%  Similarity=0.321  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      =|+|.|++|+||||.+..++..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhh
Confidence            4899999999999999999874

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=87.65  E-value=0.15  Score=42.69  Aligned_cols=20  Identities=35%  Similarity=0.561  Sum_probs=17.5

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10504        107 VVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~  126 (286)
                      +++.|+||+|||.|.+.+..
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            45579999999999999976

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.60  E-value=0.14  Score=40.04  Aligned_cols=21  Identities=29%  Similarity=0.389  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q psy10504        107 VVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +.+.|++|+|||-|+++++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999874

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=87.42  E-value=0.15  Score=41.00  Aligned_cols=20  Identities=30%  Similarity=0.449  Sum_probs=17.4

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q psy10504        107 VVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       107 V~ivG~~~~GKTSLi~~l~~  126 (286)
                      ++|.|++|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999877764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=87.19  E-value=0.17  Score=42.38  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=21.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .-++|.|=|..|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            346799999999999999999865

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=87.08  E-value=0.2  Score=42.08  Aligned_cols=25  Identities=24%  Similarity=0.296  Sum_probs=22.1

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +-++|.|=|..|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4578999999999999999999863

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=86.85  E-value=0.16  Score=39.31  Aligned_cols=23  Identities=30%  Similarity=0.589  Sum_probs=18.3

Q ss_pred             eEEEEEECCCCCcHHHHHHHHhc
Q psy10504        104 EFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       104 ~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .--+.|.|++|+|||+|...+..
T Consensus        26 G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            34577899999999999876653

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.83  E-value=0.17  Score=40.12  Aligned_cols=21  Identities=24%  Similarity=0.474  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .+++.|++|+|||++++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            478999999999999988765

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.54  E-value=0.2  Score=38.86  Aligned_cols=21  Identities=19%  Similarity=0.360  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -+++.|++|+||||++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999997766

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=86.15  E-value=0.16  Score=39.42  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=20.6

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      +.-.+++.|++++|||.++.+++.
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHH
Confidence            445789999999999999888875

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=86.10  E-value=0.2  Score=39.41  Aligned_cols=21  Identities=19%  Similarity=0.205  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998854

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.45  E-value=0.32  Score=34.36  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=22.5

Q ss_pred             cceEEEEEECCCCCcHHHHHHHHhc
Q psy10504        102 MREFKVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       102 ~~~~kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .+.+.|.+-|..|+||+++.++|..
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            3679999999999999999999865

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=84.22  E-value=0.19  Score=40.72  Aligned_cols=15  Identities=33%  Similarity=0.625  Sum_probs=13.0

Q ss_pred             EEEECCCCCcHHHHH
Q psy10504        107 VVVLGSGGVGKSALT  121 (286)
Q Consensus       107 V~ivG~~~~GKTSLi  121 (286)
                      ++|.|.+|+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            678999999999763

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=84.11  E-value=0.25  Score=39.46  Aligned_cols=21  Identities=33%  Similarity=0.578  Sum_probs=17.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      -.+|.|++|+|||+|+-.+.-
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            366999999999999877754

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.31  E-value=1.9  Score=34.57  Aligned_cols=75  Identities=12%  Similarity=0.192  Sum_probs=42.0

Q ss_pred             EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504        105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS  184 (286)
Q Consensus       105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d  184 (286)
                      --+.+.|++++|||+|+-.++.....                 .+..  ..++||-|--.........+. .|- ++++.
T Consensus        61 ~i~e~~G~~~~GKT~l~l~~~~~~q~-----------------~g~~--~vyIDtE~~~~~e~a~~~GvD-~d~-il~~~  119 (269)
T d1mo6a1          61 RVIEIYGPESSGKTTVALHAVANAQA-----------------AGGV--AAFIDAEHALDPDYAKKLGVD-TDS-LLVSQ  119 (269)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHHHH-----------------TTCE--EEEEESSCCCCHHHHHHHTCC-GGG-CEEEC
T ss_pred             eeEEEecCCCcHHHHHHHHHHHHHhc-----------------CCCE--EEEEECCccCCHHHHHHhCCC-HHH-eEEec
Confidence            34679999999999998777642111                 1222  457899884433333333332 232 23444


Q ss_pred             CCCcccHHHHHHHHHHHHH
Q psy10504        185 LTNHHTFQDIKQMKELITR  203 (286)
Q Consensus       185 ~~~~~s~~~~~~~~~~i~~  203 (286)
                         +.+.+++.+..+.+..
T Consensus       120 ---~~~~E~~~~~~~~l~~  135 (269)
T d1mo6a1         120 ---PDTGEQALEIADMLIR  135 (269)
T ss_dssp             ---CSSHHHHHHHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHHHh
Confidence               3455666665555544

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=82.42  E-value=0.26  Score=40.29  Aligned_cols=15  Identities=20%  Similarity=0.616  Sum_probs=13.1

Q ss_pred             EEEECCCCCcHHHHH
Q psy10504        107 VVVLGSGGVGKSALT  121 (286)
Q Consensus       107 V~ivG~~~~GKTSLi  121 (286)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            779999999999764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=82.34  E-value=0.36  Score=39.48  Aligned_cols=25  Identities=16%  Similarity=0.267  Sum_probs=21.4

Q ss_pred             ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504        103 REFKVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       103 ~~~kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      +.=|++|+|++|+|||+|+..+..+
T Consensus        42 rGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          42 RGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             TTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            4458999999999999999888763

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=81.66  E-value=0.35  Score=41.44  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q psy10504        106 KVVVLGSGGVGKSALTVQFVSG  127 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~~  127 (286)
                      -++|+|.+|+|||+++..++..
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHHHH
Confidence            4899999999999998777653

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=81.48  E-value=0.49  Score=39.16  Aligned_cols=21  Identities=33%  Similarity=0.626  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q psy10504        106 KVVVLGSGGVGKSALTVQFVS  126 (286)
Q Consensus       106 kV~ivG~~~~GKTSLi~~l~~  126 (286)
                      .++++|++|+|||.+.+.+..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            578899999999999888765

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=80.53  E-value=3.3  Score=31.41  Aligned_cols=64  Identities=14%  Similarity=0.155  Sum_probs=44.2

Q ss_pred             EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEE-EEEeCCCCC
Q psy10504        152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL-LVANKLDLA  222 (286)
Q Consensus       152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-vv~nK~Dl~  222 (286)
                      +.+.++|+|+...  ......+..+|.++++...+ ..++.........+.+    .+.|++ +|+|+.|..
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~  176 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK----AGLAILGFVLNRYGRS  176 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH----TTCEEEEEEEEEETSC
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhh----hhhhhhhhhhcccccc
Confidence            4588999998643  23344566799999999874 4556666665555554    367766 889999865