Psyllid ID: psy10544

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
MTSQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALSALLYRGEVSVDQDRLTTFLKVAESLRIKELVSNVKAERDTEGNSGGDQTERTSPTPERFPPGLLKP
ccccEEEEEccccHHHHHHHHHHHHccccEEEEEEEEccEEEEEEEEEEccccHHHHHHHccccccccEEEEccccHHHHHHHHccHHccEEEEEcccHHHHHHHHHccccccHHHHHHccccccccccccHHHHHHHHccHHHHHccccccccccccccccccccccccccccccccccc
cccccEEEEccccHHHHHHHHHHHHcccccEEEEEEEcccEEHHHHHEEHcccHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHcccEEccHHHHHHHHHHHHHHHHcccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccc
MTSQRFCLRWNNHQSNLLSVFDQllhdesfvDVTLAVDGRYLKAHKIVLSACSPyfqalfvghpdrhpivilkdipyvdmRSLLDFMyrgevsvdqDRLTTFLKVAESLRIKALSALLYrgevsvdqDRLTTFLKVAESLRIKELVSNVkaerdtegnsggdqtertsptperfppgllkp
MTSQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALSALlyrgevsvdqdRLTTFLKVaeslrikelvsnvkaerdtegnsggdqtertsptperfppgllkp
MTSQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALSALLYRGEVSVDQDRLTTFLKVAESLRIKELVSNVKAERDTEGNSGGDQTERTSPTPERFPPGLLKP
*****FCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALSALLYRGEVSVDQDRLTTFLKVAESLRIKELV***********************************
*TSQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALS******************************************************************
MTSQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALSALLYRGEVSVDQDRLTTFLKVAESLRIKELVSNVK*******************************
***QRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALS******************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTSQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALSALLYRGEVSVDQDRLTTFLKVAESLRIKELVSNVKAERDTEGNSGGDQTERTSPTPERFPPGLLKP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query181 2.2.26 [Sep-21-2011]
P42282 813 Protein tramtrack, alpha yes N/A 0.635 0.141 0.817 5e-55
P17789 643 Protein tramtrack, beta i no N/A 0.646 0.181 0.803 1e-54
P42283 891 Longitudinals lacking pro no N/A 0.618 0.125 0.625 1e-40
P42284 549 Longitudinals lacking pro no N/A 0.618 0.204 0.625 2e-40
Q9W0K4 1067 Protein bric-a-brac 2 OS= no N/A 0.718 0.121 0.541 2e-40
Q9V5M3 878 Longitudinals lacking pro no N/A 0.618 0.127 0.625 3e-40
Q7KQZ4 787 Longitudinals lacking pro no N/A 0.618 0.142 0.625 8e-40
Q9V5M6 963 Longitudinals lacking pro no N/A 0.618 0.116 0.625 4e-39
Q867Z4 970 Longitudinals lacking pro no N/A 0.618 0.115 0.625 1e-38
Q9W0K7 977 Protein bric-a-brac 1 OS= no N/A 0.618 0.114 0.571 8e-37
>sp|P42282|TTKA_DROME Protein tramtrack, alpha isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=3 Back     alignment and function desciption
 Score =  213 bits (543), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 94/115 (81%), Positives = 106/115 (92%)

Query: 1   MTSQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALF 60
           M SQRFCLRWNNHQSNLLSVFDQLLH E+F DVTLAV+G++LKAHK+VLSACSPYF  LF
Sbjct: 3   MASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMVLSACSPYFNTLF 62

Query: 61  VGHPDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALS 115
           V HP++HPIVILKD+PY DM+SLLDFMYRGEVSVDQ+RLT FL+VAESLRIK L+
Sbjct: 63  VSHPEKHPIVILKDVPYSDMKSLLDFMYRGEVSVDQERLTAFLRVAESLRIKGLT 117
Binds to a number of sites in the transcriptional regulatory region of ftz. Isoform alpha is required to repress genes that promote the R7 cell fate. Probable repressor of the transcription of the segmentation genes ftz, eve, h, odd, run, and en. May bind to the region 5'-AGGG[CT]GG-3'. Degradation of ttk is directed by binding of sinah or sina, via the adapter molecule phyl which binds to the BTB domain of ttk.
Drosophila melanogaster (taxid: 7227)
>sp|P17789|TTKB_DROME Protein tramtrack, beta isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=2 Back     alignment and function description
>sp|P42283|LOLA1_DROME Longitudinals lacking protein, isoform G OS=Drosophila melanogaster GN=lola PE=1 SV=2 Back     alignment and function description
>sp|P42284|LOLA2_DROME Longitudinals lacking protein, isoforms H/M/V OS=Drosophila melanogaster GN=lola PE=1 SV=2 Back     alignment and function description
>sp|Q9W0K4|BAB2_DROME Protein bric-a-brac 2 OS=Drosophila melanogaster GN=bab2 PE=1 SV=2 Back     alignment and function description
>sp|Q9V5M3|LOLA6_DROME Longitudinals lacking protein, isoforms N/O/W/X/Y OS=Drosophila melanogaster GN=lola PE=1 SV=3 Back     alignment and function description
>sp|Q7KQZ4|LOLA3_DROME Longitudinals lacking protein, isoforms A/B/D/L OS=Drosophila melanogaster GN=lola PE=1 SV=1 Back     alignment and function description
>sp|Q9V5M6|LOLA5_DROME Longitudinals lacking protein, isoforms J/P/Q/S/Z OS=Drosophila melanogaster GN=lola PE=1 SV=4 Back     alignment and function description
>sp|Q867Z4|LOLA4_DROME Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila melanogaster GN=lola PE=1 SV=1 Back     alignment and function description
>sp|Q9W0K7|BAB1_DROME Protein bric-a-brac 1 OS=Drosophila melanogaster GN=bab1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query181
328789120 592 PREDICTED: hypothetical protein LOC41091 0.646 0.197 0.880 2e-57
350401479 577 PREDICTED: protein tramtrack, alpha isof 0.646 0.202 0.880 2e-57
350401483 582 PREDICTED: protein tramtrack, alpha isof 0.646 0.201 0.880 2e-57
383857176 584 PREDICTED: uncharacterized protein LOC10 0.646 0.200 0.880 3e-57
340728528 366 PREDICTED: protein tramtrack, alpha isof 0.646 0.319 0.880 3e-57
322790859 573 hypothetical protein SINV_11549 [Solenop 0.640 0.202 0.879 4e-57
307206261 544 Protein tramtrack, alpha isoform [Harpeg 0.646 0.215 0.871 4e-57
332021453 515 Protein tramtrack, alpha isoform [Acromy 0.646 0.227 0.871 6e-57
156548500 531 PREDICTED: hypothetical protein LOC10012 0.646 0.220 0.871 6e-57
380013934 724 PREDICTED: protein tramtrack, beta isofo 0.646 0.161 0.880 8e-57
>gi|328789120|ref|XP_394394.4| PREDICTED: hypothetical protein LOC410918 [Apis mellifera] Back     alignment and taxonomy information
 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/117 (88%), Positives = 112/117 (95%)

Query: 1   MTSQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALF 60
           M SQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAV+G+ L+AHK+VLSACSPYFQALF
Sbjct: 17  MASQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVEGQLLRAHKMVLSACSPYFQALF 76

Query: 61  VGHPDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALSAL 117
           VGHPD+HPIVILKD+PYVDMRSLLDFMYRGEVSVDQDRLT FL+VAESLRIK L+ +
Sbjct: 77  VGHPDKHPIVILKDVPYVDMRSLLDFMYRGEVSVDQDRLTAFLRVAESLRIKGLTEV 133

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350401479|ref|XP_003486166.1| PREDICTED: protein tramtrack, alpha isoform-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|350401483|ref|XP_003486167.1| PREDICTED: protein tramtrack, alpha isoform-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|383857176|ref|XP_003704081.1| PREDICTED: uncharacterized protein LOC100876583 [Megachile rotundata] Back     alignment and taxonomy information
>gi|340728528|ref|XP_003402574.1| PREDICTED: protein tramtrack, alpha isoform-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|322790859|gb|EFZ15544.1| hypothetical protein SINV_11549 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307206261|gb|EFN84326.1| Protein tramtrack, alpha isoform [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332021453|gb|EGI61821.1| Protein tramtrack, alpha isoform [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|156548500|ref|XP_001605714.1| PREDICTED: hypothetical protein LOC100122117 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|380013934|ref|XP_003690999.1| PREDICTED: protein tramtrack, beta isoform-like [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query181
FB|FBgn0003870 813 ttk "tramtrack" [Drosophila me 0.635 0.141 0.817 4e-48
FB|FBgn0025525 1067 bab2 "bric a brac 2" [Drosophi 0.944 0.160 0.468 2.3e-36
FB|FBgn0005630 970 lola "longitudinals lacking" [ 0.618 0.115 0.625 5.9e-36
FB|FBgn0004870 977 bab1 "bric a brac 1" [Drosophi 0.839 0.155 0.470 2.1e-34
FB|FBgn0263108 798 BtbVII "BTB-protein-VII" [Dros 0.646 0.146 0.606 4.3e-34
FB|FBgn0264981 1089 mamo "maternal gene required f 0.646 0.107 0.559 2e-32
FB|FBgn0000210 880 br "broad" [Drosophila melanog 0.624 0.128 0.530 1.5e-30
FB|FBgn0004652 955 fru "fruitless" [Drosophila me 0.618 0.117 0.562 3.8e-30
FB|FBgn0022238127 lolal "lola like" [Drosophila 0.629 0.897 0.508 4.9e-30
FB|FBgn0003715 1046 CG16778 [Drosophila melanogast 0.602 0.104 0.486 3.8e-28
FB|FBgn0003870 ttk "tramtrack" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 508 (183.9 bits), Expect = 4.0e-48, P = 4.0e-48
 Identities = 94/115 (81%), Positives = 106/115 (92%)

Query:     1 MTSQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALF 60
             M SQRFCLRWNNHQSNLLSVFDQLLH E+F DVTLAV+G++LKAHK+VLSACSPYF  LF
Sbjct:     3 MASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMVLSACSPYFNTLF 62

Query:    61 VGHPDRHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALS 115
             V HP++HPIVILKD+PY DM+SLLDFMYRGEVSVDQ+RLT FL+VAESLRIK L+
Sbjct:    63 VSHPEKHPIVILKDVPYSDMKSLLDFMYRGEVSVDQERLTAFLRVAESLRIKGLT 117
GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IDA
GO:0005634 "nucleus" evidence=NAS;IDA
GO:0007422 "peripheral nervous system development" evidence=TAS
GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA
GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IDA
GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS
GO:0045467 "R7 cell development" evidence=IMP;TAS
GO:0005700 "polytene chromosome" evidence=IDA
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0005515 "protein binding" evidence=IPI
GO:0046843 "dorsal appendage formation" evidence=IMP
GO:0008270 "zinc ion binding" evidence=IEA
GO:0001709 "cell fate determination" evidence=TAS
GO:0017053 "transcriptional repressor complex" evidence=IPI
GO:0003682 "chromatin binding" evidence=IDA
GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA
GO:0030707 "ovarian follicle cell development" evidence=IMP
GO:0007298 "border follicle cell migration" evidence=IMP
GO:0048813 "dendrite morphogenesis" evidence=IMP
GO:0048666 "neuron development" evidence=IMP
GO:0035001 "dorsal trunk growth, open tracheal system" evidence=IMP
GO:0060446 "branching involved in open tracheal system development" evidence=IMP
GO:0016476 "regulation of embryonic cell shape" evidence=IMP
GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP
GO:0040003 "chitin-based cuticle development" evidence=IMP
GO:0035147 "branch fusion, open tracheal system" evidence=IMP
GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP
GO:0001964 "startle response" evidence=IMP
GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP
GO:0048854 "brain morphogenesis" evidence=IMP
GO:0002121 "inter-male aggressive behavior" evidence=IMP
GO:0008360 "regulation of cell shape" evidence=IMP
GO:0042675 "compound eye cone cell differentiation" evidence=IMP
GO:0048053 "R1/R6 development" evidence=IMP
GO:0048750 "compound eye corneal lens morphogenesis" evidence=IMP
GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP
FB|FBgn0025525 bab2 "bric a brac 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0005630 lola "longitudinals lacking" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0004870 bab1 "bric a brac 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0263108 BtbVII "BTB-protein-VII" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0264981 mamo "maternal gene required for meiosis" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0000210 br "broad" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0004652 fru "fruitless" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0022238 lolal "lola like" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0003715 CG16778 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P42282TTKA_DROMENo assigned EC number0.81730.63530.1414yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query181
pfam00651101 pfam00651, BTB, BTB/POZ domain 2e-30
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 1e-23
PHA03098 534 PHA03098, PHA03098, kelch-like protein; Provisiona 7e-06
PHA02713 557 PHA02713, PHA02713, hypothetical protein; Provisio 3e-04
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information 
 Score =  106 bits (266), Expect = 2e-30
 Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 2/94 (2%)

Query: 21  FDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDM 80
            ++L  +    DVTL V  +   AHK VL+ACSPYF+ALF G+ +    + L+D+   D 
Sbjct: 1   LNELRENGELCDVTLVVGDKEFHAHKAVLAACSPYFKALFTGNKEVE--ITLEDVSPEDF 58

Query: 81  RSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
            +LL+F+Y G++ + ++ +   L +A+ L+I AL
Sbjct: 59  EALLEFIYTGKLEITEENVDDLLALADKLQIPAL 92

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 181
PHA02713 557 hypothetical protein; Provisional 99.95
KOG4441|consensus 571 99.95
PHA02790 480 Kelch-like protein; Provisional 99.93
PHA03098 534 kelch-like protein; Provisional 99.93
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.87
KOG4591|consensus280 99.85
KOG4350|consensus 620 99.85
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.8
KOG2075|consensus 521 99.75
KOG4682|consensus 488 99.65
KOG0783|consensus 1267 99.44
KOG0783|consensus 1267 98.86
KOG2716|consensus230 98.62
KOG2838|consensus 401 98.54
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 98.34
KOG0511|consensus516 98.3
KOG2838|consensus401 98.26
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 98.01
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 97.7
KOG3473|consensus112 97.45
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 97.44
KOG1987|consensus297 97.4
KOG0511|consensus 516 97.35
KOG2714|consensus 465 97.26
KOG2715|consensus210 97.02
KOG1724|consensus162 96.8
KOG1665|consensus 302 96.72
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 95.84
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 92.4
KOG2723|consensus221 86.17
KOG1778|consensus 319 85.6
KOG3840|consensus 438 84.78
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information 
Probab=99.95  E-value=1.3e-27  Score=207.07  Aligned_cols=146  Identities=21%  Similarity=0.250  Sum_probs=132.4

Q ss_pred             eeecCccHHHHHHHHHHHHhCCCcccEEEEEC-CeEEEhhHHHhhccCHHHHHhhcCCCC---CCCeEEeCCCCHHHHHH
Q psy10544          7 CLRWNNHQSNLLSVFDQLLHDESFVDVTLAVD-GRYLKAHKIVLSACSPYFQALFVGHPD---RHPIVILKDIPYVDMRS   82 (181)
Q Consensus         7 ~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~-~~~~~~Hk~vLa~~S~~F~~~f~~~~~---~~~~i~l~~i~~~~f~~   82 (181)
                      ++.+..|...+++.|+++++++.+|||+|.++ |+.|+|||.|||++|+||++||.+++.   ..++|.|.++++++|+.
T Consensus         2 ~~~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~   81 (557)
T PHA02713          2 DIDDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKN   81 (557)
T ss_pred             CcchhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHH
Confidence            46678999999999999999999999999997 899999999999999999999998854   25789999999999999


Q ss_pred             HhhhHcCCcccCCHHhHHHHHHHHhhcCcHHHHHHHHHhhh-cCChhhHHHHHHHHHHcChHHHHHHhHHhhc
Q psy10544         83 LLDFMYRGEVSVDQDRLTTFLKVAESLRIKALSALLYRGEV-SVDQDRLTTFLKVAESLRIKELVSNVKAERD  154 (181)
Q Consensus        83 lL~ylYtg~~~~~~~~v~~ll~~A~~~~~~~l~~~c~~~~~-~~~~~~~~~~l~~a~~~~~~~L~~~~~~~~~  154 (181)
                      +|+|+|||+  ++.+|+.+||.+|++|+++.+++.|.+++. .++.+||+.++..|..+.+..|.+.+...+.
T Consensus        82 ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~  152 (557)
T PHA02713         82 IVQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLM  152 (557)
T ss_pred             HHHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHH
Confidence            999999997  689999999999999999999999998755 8899999999998888888778777665543

>KOG4441|consensus Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG4591|consensus Back     alignment and domain information
>KOG4350|consensus Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG2075|consensus Back     alignment and domain information
>KOG4682|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG2716|consensus Back     alignment and domain information
>KOG2838|consensus Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG0511|consensus Back     alignment and domain information
>KOG2838|consensus Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG3473|consensus Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1987|consensus Back     alignment and domain information
>KOG0511|consensus Back     alignment and domain information
>KOG2714|consensus Back     alignment and domain information
>KOG2715|consensus Back     alignment and domain information
>KOG1724|consensus Back     alignment and domain information
>KOG1665|consensus Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG2723|consensus Back     alignment and domain information
>KOG1778|consensus Back     alignment and domain information
>KOG3840|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query181
2q81_A119 Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length 1e-08
3m52_A117 Crystal Structure Of The Btb Domain From The Miz-1Z 1e-08
2z8h_A138 Structure Of Mouse Bach1 Btb Domain Length = 138 2e-07
2nn2_A133 Crystal Structure Of The Btb Domain From The LrfZBT 2e-07
2if5_A120 Structure Of The Poz Domain Of Human Lrf, A Master 3e-07
3ohu_A125 Crystal Structure Of The Human Bach2 Poz Domain, Fo 5e-07
2ihc_A124 Crystal Structure Of The Bric-A-Brac (Btb) Domain O 7e-07
1r28_A127 Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) B 1e-05
3e4u_A130 Crystal Structure Of The Wild-Type Human Bcl6 BtbPO 1e-05
2ppi_A144 Structure Of The Btb (Tramtrack And Bric A Brac) Do 1e-05
3b84_A119 Crystal Structure Of The Human Btb Domain Of The Kr 5e-05
3ga1_A129 Crystal Structure Of The Human Nac1 Poz Domain Leng 8e-05
3fkc_A116 Crystal Structure Of Human Zinc Finger And Btb Doma 1e-04
2yy9_A135 Crystal Structure Of Btb Domain From Mouse Hkr3 Len 1e-04
3hve_A256 Structures Of Spop-Substrate Complexes: Insights In 2e-04
3hve_B256 Structures Of Spop-Substrate Complexes: Insights In 2e-04
3m8v_A124 Crystal Structure Of The Btb Domain From KaisoZBTB3 4e-04
3hqi_A312 Structures Of Spop-Substrate Complexes: Insights In 9e-04
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length = 119 Back     alignment and structure 
Iteration: 1

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 12  NHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVI 71
            H  ++L   +Q        D T  VDG + KAHK VL+ACS YF+ LFV   D+  +V 
Sbjct: 9   QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFV---DQKDVVH 65
Query: 72  LKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIK 112
           L       +  +L+FMY  ++S+  + +   L VA  L+++
Sbjct: 66  LDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQ 106
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17 Transcription Regulator Length = 117 Back     alignment and structure
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain Length = 138 Back     alignment and structure
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7 Transcriptional Regulator Length = 133 Back     alignment and structure
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master Regulator Of Oncogenesis Length = 120 Back     alignment and structure
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I Length = 125 Back     alignment and structure
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human Bach1 Length = 124 Back     alignment and structure
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb Domain To 2.2 Angstrom Length = 127 Back     alignment and structure
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ DOMAIN Length = 130 Back     alignment and structure
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain Of Human Gigaxonin Length = 144 Back     alignment and structure
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel Related Zinc Finger Protein 3 (Hkr3) Length = 119 Back     alignment and structure
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain Length = 129 Back     alignment and structure
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain Containing 33 Length = 116 Back     alignment and structure
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3 Length = 135 Back     alignment and structure
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: Gigaxoninbtb3-Box Length = 256 Back     alignment and structure
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: Gigaxoninbtb3-Box Length = 256 Back     alignment and structure
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM II Length = 124 Back     alignment and structure
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query181
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 3e-28
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 6e-28
2vpk_A116 Myoneurin; transcription regulation, transcription 7e-28
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 2e-27
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 2e-27
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 6e-27
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 7e-27
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 2e-26
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 3e-26
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 4e-26
3b84_A119 Zinc finger and BTB domain-containing protein 48; 6e-26
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 9e-26
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 1e-24
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 4e-23
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 5e-23
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 1e-22
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 1e-20
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 1e-20
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 2e-20
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 5e-19
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
 Score =  101 bits (254), Expect = 3e-28
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 1/113 (0%)

Query: 3   SQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVG 62
           S  F    + H +N+L   +     +   DVT+ V+G+  +AH+ VL+ACS YF +  VG
Sbjct: 9   SAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVG 68

Query: 63  HPD-RHPIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
             D    + + +++       L+ F Y  ++ + +D +    +  E L +  +
Sbjct: 69  QTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNI 121
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query181
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.97
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.97
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.97
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.97
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.97
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.96
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.96
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.96
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.96
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.96
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.96
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.96
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.96
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.96
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.96
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.96
2vpk_A116 Myoneurin; transcription regulation, transcription 99.96
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.95
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.94
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.93
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.58
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.37
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.35
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 99.23
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.79
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.78
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.76
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.75
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 98.33
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 98.0
3kvt_A115 Potassium channel protein SHAW; tetramerization do 97.35
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 97.32
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 97.1
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 97.05
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 96.71
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 92.88
2r9r_B 514 Paddle chimera voltage gated potassium channel KV; 92.69
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 86.02
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 82.83
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
Probab=99.97  E-value=6.1e-31  Score=194.69  Aligned_cols=155  Identities=19%  Similarity=0.264  Sum_probs=138.8

Q ss_pred             CcceeeecCccHHHHHHHHHHHHhCCCcccEEEEECCeEEEhhHHHhhccCHHHHHhhcCCC--CCCCeEEeCCCCHHHH
Q psy10544          3 SQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHP--DRHPIVILKDIPYVDM   80 (181)
Q Consensus         3 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~--~~~~~i~l~~i~~~~f   80 (181)
                      ++.-...++.++.++.++++++++++.+|||+|.++|+.|+|||.||+++|+||++||.++.  .....|.++++++++|
T Consensus         7 ~~~~~~~~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f   86 (172)
T 3htm_A            7 GQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVF   86 (172)
T ss_dssp             -----CCSCCCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHH
T ss_pred             CccccccCCCCHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHH
Confidence            34444556667788999999999999999999999999999999999999999999999874  3457999999999999


Q ss_pred             HHHhhhHcCCcccCCHHhHHHHHHHHhhcCcHHHHHHHHHhhh-cCChhhHHHHHHHHHHcChHHHHHHhHHhhccCC
Q psy10544         81 RSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKALSALLYRGEV-SVDQDRLTTFLKVAESLRIKELVSNVKAERDTEG  157 (181)
Q Consensus        81 ~~lL~ylYtg~~~~~~~~v~~ll~~A~~~~~~~l~~~c~~~~~-~~~~~~~~~~l~~a~~~~~~~L~~~~~~~~~~~~  157 (181)
                      +.+|+|+|+|.+.++.+++.+++.+|++|+++.+++.|++++. .++.+||..++.+|+.|++..|.+.+...+..+-
T Consensus        87 ~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~  164 (172)
T 3htm_A           87 KEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHA  164 (172)
T ss_dssp             HHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCCCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999997654 7899999999999999999999999998887654
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 181
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 2e-25
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 4e-23
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.9 bits (230), Expect = 2e-25
 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 2/109 (1%)

Query: 8   LRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRH 67
           +++  H S++L   ++L   +   DV + V     +AHK VL ACS  F ++F     R+
Sbjct: 3   IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN 62

Query: 68  --PIVILKDIPYVDMRSLLDFMYRGEVSVDQDRLTTFLKVAESLRIKAL 114
              I +  +I       LLDFMY   +++ +  +   +  A  L+++ +
Sbjct: 63  LSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHV 111
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query181
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.97
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.97
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 98.31
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 98.18
d3kvta_103 akv3.1 voltage-gated potassium channel {California 97.7
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 97.69
d1t1da_100 Shaker potassium channel {California sea hare (Apl 97.59
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 96.49
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 96.4
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 92.74
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 90.5
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-31  Score=185.29  Aligned_cols=119  Identities=23%  Similarity=0.317  Sum_probs=112.1

Q ss_pred             CcceeeecCccHHHHHHHHHHHHhCCCcccEEEEECCeEEEhhHHHhhccCHHHHHhhcCCCCCCCeEEeCCCCHHHHHH
Q psy10544          3 SQRFCLRWNNHQSNLLSVFDQLLHDESFVDVTLAVDGRYLKAHKIVLSACSPYFQALFVGHPDRHPIVILKDIPYVDMRS   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~~~~~i~l~~i~~~~f~~   82 (181)
                      ++.+++++++|+..+++.+++++.++.+||++|.++|++|+|||.||+++|+||++||.++   ..++.++++++++|+.
T Consensus         1 ~~~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~---~~~i~~~~v~~~~f~~   77 (121)
T d1buoa_           1 MGMIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN---SQHYTLDFLSPKTFQQ   77 (121)
T ss_dssp             CCCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC---CSEEEECSSCHHHHHH
T ss_pred             CCeEEEcCCchHHHHHHHHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCc---cceeecCCCCHHHHHH
Confidence            3578899999999999999999999999999999999999999999999999999999764   3579999999999999


Q ss_pred             HhhhHcCCcccCCHHhHHHHHHHHhhcCcHHHHHHHHHhhhc
Q psy10544         83 LLDFMYRGEVSVDQDRLTTFLKVAESLRIKALSALLYRGEVS  124 (181)
Q Consensus        83 lL~ylYtg~~~~~~~~v~~ll~~A~~~~~~~l~~~c~~~~~~  124 (181)
                      +|+|+|||++.++.+++.+++.+|++|+++.+++.|.+++..
T Consensus        78 ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~L~~~C~~~L~~  119 (121)
T d1buoa_          78 ILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET  119 (121)
T ss_dssp             HHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHheEccccCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999987643
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure