Psyllid ID: psy10549

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MASLVSLSSTDAVKSSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLETKVGVEPAT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHccccccccccccccccEEEcccccccccHHHHHHHHHEEcHHHHHHHccccEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
maslvslsstdAVKSSLvksnghrtsrdhlMTMDEKYVQDIWLLLKNAIQEIQKknnsglsfEELYRNAYTMVLHKHGERLYSGLKEVVTAHLEtkvgvepat
Flexible Loop (DISEMBL)
maslvslsstdavksslvksnghrtsrdhlMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHletkvgvepat
Low Complexity Region (SEG)
MASLVSLSSTDAVKSSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLETKVGVEPAT
Disordered region (IsUnstruct)
*******************************TMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLET********
Disordered Region (DISOPRED)
************************************YVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLETKVGV****
Disordered Region (DISEMBL)
***********************RTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLETKVGVEPAT
Disordered Region (DISPRO)
********************NGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLETKVG*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASLVSLSSTDAVKSSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLETKVGVEPAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
A4IHP4	768	Cullin-3 OS=Xenopus tropi	yes	N/A	0.805	0.108	0.727	5e-29
Q6GPF3	768	Cullin-3-B OS=Xenopus lae	N/A	N/A	0.805	0.108	0.727	5e-29
Q6DE95	768	Cullin-3-A OS=Xenopus lae	N/A	N/A	0.805	0.108	0.727	5e-29
Q13618	768	Cullin-3 OS=Homo sapiens	yes	N/A	0.805	0.108	0.715	1e-28
B5DF89	768	Cullin-3 OS=Rattus norveg	yes	N/A	0.805	0.108	0.715	1e-28
Q9JLV5	768	Cullin-3 OS=Mus musculus	yes	N/A	0.805	0.108	0.715	1e-28
Q17391	777	Cullin-3 OS=Caenorhabditi	yes	N/A	0.650	0.086	0.731	5e-24
Q9ZVH4	732	Cullin-3A OS=Arabidopsis	yes	N/A	0.757	0.106	0.487	2e-15
Q9C9L0	732	Cullin-3B OS=Arabidopsis	no	N/A	0.621	0.087	0.562	1e-14
Q54NZ5	769	Cullin-3 OS=Dictyostelium	yes	N/A	0.757	0.101	0.444	5e-13

>sp|A4IHP4|CUL3_XENTR Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1

 Score =  126 bits (316), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 69/88 (78%), Gaps = 5/88 (5%)

Query: 15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
          S+L KS G R       R   MTMDEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct: 2  SNLGKSTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61

Query: 70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
          YTMVLHKHGE+LY+GL+EVVT HL  KV
Sbjct: 62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89

Probable core component of cullin-based SCF-like E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The E3 ubiquitin-protein ligase activity of the complex is dependent on the neddylation of the cullin subunit. Involved in ER-Golgi transport by regulating the size of COPII coats, thereby playing a key role in collagen export, which is required for embryonic stem (ES) cells division.
Xenopus tropicalis (taxid: 8364)

>sp|Q6GPF3|CUL3B_XENLA Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1

 Score =  126 bits (316), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 69/88 (78%), Gaps = 5/88 (5%)

Query: 15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
          S+L KS G R       R   MTMDEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct: 2  SNLGKSTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61

Query: 70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
          YTMVLHKHGE+LY+GL+EVVT HL  KV
Sbjct: 62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89

Probable core component of cullin-based SCF-like E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The E3 ubiquitin-protein ligase activity of the complex is dependent on the neddylation of the cullin subunit. Involved in ER-Golgi transport by regulating the size of COPII coats, thereby playing a key role in collagen export, which is required for embryonic stem (ES) cells division.

Xenopus laevis (taxid: 8355)

>sp|Q6DE95|CUL3A_XENLA Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1

 Score =  126 bits (316), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 69/88 (78%), Gaps = 5/88 (5%)

Query: 15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
          S+L KS G R       R   MTMDEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct: 2  SNLGKSTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61

Query: 70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
          YTMVLHKHGE+LY+GL+EVVT HL  KV
Sbjct: 62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89

Probable core component of cullin-based SCF-like E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The E3 ubiquitin-protein ligase activity of the complex is dependent on the neddylation of the cullin subunit. Involved in ER-Golgi transport by regulating the size of COPII coats, thereby playing a key role in collagen export, which is required for embryonic stem (ES) cells division.

Xenopus laevis (taxid: 8355)

>sp|Q13618|CUL3_HUMAN Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 68/88 (77%), Gaps = 5/88 (5%)

Query: 15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
          S+L K  G R       R   MTMDEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct: 2  SNLSKGTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61

Query: 70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
          YTMVLHKHGE+LY+GL+EVVT HL  KV
Sbjct: 62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89

Core component of multiple cullin-RING-based BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. As a scaffold protein may contribute to catalysis through positioning of the substrate and the ubiquitin-conjugating enzyme. The E3 ubiquitin-protein ligase activity of the complex is dependent on the neddylation of the cullin subunit and is inhibited by the association of the deneddylated cullin subunit with TIP120A/CAND1 (By similarity). The functional specificity of the BCR complex depends on the BTB domain-containing protein as the susbstrate recognition component. BCR(SPOP) is involved in ubiquitination of BMI1/PCGF4, H2AFY and DAXX, and probably GLI2 or GLI3. BCR(KLHL9-KLHL13) controls the dynamic behavior of AURKB on mitotic chromosomes and thereby coordinates faithful mitotic progression and completion of cytokinesis. BCR(KLHL12) is involved in ER-Golgi transport by regulating the size of COPII coats, thereby playing a key role in collagen export, which is required for embryonic stem (ES) cells division: BCR(KLHL12) acts by mediating monoubiquitination of SEC31 (SEC31A or SEC31B). BCR(KLHL3) acts as a regulator of ion transport in the distal nephron; possibly by mediating ubiquitination of SLC12A3/NCC. Involved in ubiquitination of cyclin E and of cyclin D1 (in vitro) thus involved in regulation of G1/S transition.

Homo sapiens (taxid: 9606)

>sp|B5DF89|CUL3_RAT Cullin-3 OS=Rattus norvegicus GN=Cul3 PE=1 SV=2

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 68/88 (77%), Gaps = 5/88 (5%)

Query: 15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
          S+L K  G R       R   MTMDEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct: 2  SNLSKGTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61

Query: 70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
          YTMVLHKHGE+LY+GL+EVVT HL  KV
Sbjct: 62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89

Core component of multiple cullin-RING-based BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. As a scaffold protein may contribute to catalysis through positioning of the substrate and the ubiquitin-conjugating enzyme. The E3 ubiquitin-protein ligase activity of the complex is dependent on the neddylation of the cullin subunit and is inhibited by the association of the deneddylated cullin subunit with TIP120A/CAND1 (By similarity). The functional specificity of the BCR complex depends on the BTB domain-containing protein as the susbstrate recognition component. BCR(SPOP) is involved in ubiquitination of BMI1/PCGF4, H2AFY and DAXX, and probably GLI2 or GLI3. BCR(KLHL9-KLHL13) controls the dynamic behavior of AURKB on mitotic chromosomes and thereby coordinates faithful mitotic progression and completion of cytokinesis. BCR(KLHL12) is involved in ER-Golgi transport by regulating the size of COPII coats, thereby playing a key role in collagen export, which is required for embryonic stem (ES) cells division: BCR(KLHL12) acts by mediating monoubiquitination of SEC31 (SEC31A or SEC31B). BCR(KLHL3) acts as a regulator of ion transport in the distal nephron; possibly by mediating ubiquitination of SLC12A3/NCC. Involved in ubiquitination of cyclin E and of cyclin D1 (in vitro) thus involved in regulation of G1/S transition.

Rattus norvegicus (taxid: 10116)

>sp|Q9JLV5|CUL3_MOUSE Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 68/88 (77%), Gaps = 5/88 (5%)

Query: 15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
          S+L K  G R       R   MTMDEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct: 2  SNLSKGTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61

Query: 70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
          YTMVLHKHGE+LY+GL+EVVT HL  KV
Sbjct: 62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89

Core component of multiple cullin-RING-based BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. As a scaffold protein may contribute to catalysis through positioning of the substrate and the ubiquitin-conjugating enzyme. The E3 ubiquitin-protein ligase activity of the complex is dependent on the neddylation of the cullin subunit and is inhibited by the association of the deneddylated cullin subunit with TIP120A/CAND1 (By similarity). The functional specificity of the BCR complex depends on the BTB domain-containing protein as the susbstrate recognition component. BCR(SPOP) is involved in ubiquitination of BMI1/PCGF4, H2AFY and DAXX, and probably GLI2 or GLI3. BCR(KLHL9-KLHL13) controls the dynamic behavior of AURKB on mitotic chromosomes and thereby coordinates faithful mitotic progression and completion of cytokinesis. BCR(KLHL3) acts as a regulator of ion transport in the distal nephron; possibly by mediating ubiquitination of SLC12A3/NCC. Involved in ubiquitination of cyclin E and of cyclin D1 (in vitro) thus involved in regulation of G1/S transition (By similarity). BCR(KLHL12) is involved in ER-Golgi transport by regulating the size of COPII coats, thereby playing a key role in collagen export, which is required for embryonic stem (ES) cells division: BCR(KLHL12) acts by mediating monoubiquitination of SEC31 (SEC31A or SEC31B).

Mus musculus (taxid: 10090)

>sp|Q17391|CUL3_CAEEL Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2

 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 57/67 (85%)

Query: 27 RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLK 86
          R  + T+DE+YV   W LLK AIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGERLY+GLK
Sbjct: 16 RPFMATIDEQYVTQTWELLKRAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGERLYNGLK 75

Query: 87 EVVTAHL 93
          +V+  H+
Sbjct: 76 DVIQDHM 82

Probable core component of multiple cullin-RING-based BCB (BTB-CUL3-BTB) E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. As a scaffold protein may contribute to catalysis through positioning of the substrate and the ubiquitin-conjugating enzyme (By similarity). Required to target mei-3/katanin for degradation at the meiosis to mitosis transition via its neddylation and deneddylation. Functions in ubiquitin-mediated degradation of CKIs to target cki-1 for degradation. Regulates microtubule stability in the early embryo.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 51/78 (65%)

Query: 19 KSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHG 78
          K N    +  H + +D KY    W +L+ AI +I  ++ SGLSFEELYRNAY MVLHK G
Sbjct: 6  KRNFQIEAFKHRVVVDPKYADKTWQILERAIHQIYNQDASGLSFEELYRNAYNMVLHKFG 65

Query: 79 ERLYSGLKEVVTAHLETK 96
          E+LY+G    +T+HL+ K
Sbjct: 66 EKLYTGFIATMTSHLKEK 83

Component of the cullin-RING ubiquitin ligases (CRL), or CUL3-RBX1-BTB protein E3 ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The functional specificity of the CRL complex depends on the BTB domain-containing protein as the susbstrate recognition component. Involved in embryo pattern formation and endosperm development. Required for the normal division and organization of the root stem cells and columella root cap cells. Regulates primary root growth by an unknown pathway, but in an ethylene-dependent manner. Functions in distal root patterning, by an ethylene-independent mechanism. Functionally redundant with CUL3B.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9L0|CUL3B_ARATH Cullin-3B OS=Arabidopsis thaliana GN=CUL3B PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 47/64 (73%)

Query: 31 MTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVT 90
          + +D KY    W +L++AI EI   N SGLSFEELYRNAY MVLHK+G++LY+GL   +T
Sbjct: 18 VVVDPKYADKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKYGDKLYTGLVTTMT 77

Query: 91 AHLE 94
           HL+
Sbjct: 78 FHLK 81

Component of the cullin-RING ubiquitin ligases (CRL), or CUL3-RBX1-BTB protein E3 ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The functional specificity of the CRL complex depends on the BTB domain-containing protein as the susbstrate recognition component. Involved in embryo pattern formation and endosperm development. Required for the normal division and organization of the root stem cells and columella root cap cells. Regulates primary root growth by an unknown pathway, but in an ethylene-dependent manner. Functions in distal root patterning, by an ethylene-independent mechanism. Functionally redundant with CUL3A.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 17 LVKSNG---HRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMV 73
          + K NG    +  + H +  D  + +  W LLK A+++I ++N S LSFEELYRN Y MV
Sbjct: 2  MAKPNGKIQFKNLQSHGVLADPDFPKRTWKLLKTAMRQIHQQNASNLSFEELYRNGYNMV 61

Query: 74 LHKHGERLYSGLKEVVTAHLE 94
          L KHG+ LY+ LK++V  HL+
Sbjct: 62 LQKHGDLLYNNLKKMVDKHLK 82

Probable core component of cullin-based SCF-like E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The E3 ubiquitin-protein ligase activity of the complex is dependent on the neddylation of the cullin subunit.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
312380841	1402	hypothetical protein AND_06989 [Anophele	0.844	0.062	0.770	4e-30
91081955	771	PREDICTED: similar to cullin [Tribolium	0.805	0.107	0.795	4e-30
118789340	779	AGAP008105-PA [Anopheles gambiae str. PE	0.796	0.105	0.804	1e-29
170050494	810	cullin-3 [Culex quinquefasciatus] gi|167	0.699	0.088	0.875	1e-29
157112840	772	cullin [Aedes aegypti] gi|157115409|ref|	0.766	0.102	0.810	1e-29
357611743	535	putative cullin 3 [Danaus plexippus]	0.825	0.158	0.790	2e-29
242024134	607	Cullin-3, putative [Pediculus humanus co	0.650	0.110	0.910	1e-28
321459316	757	hypothetical protein DAPPUDRAFT_228373 [	0.689	0.093	0.845	2e-28
383849910	786	PREDICTED: cullin-3-A-like [Megachile ro	0.805	0.105	0.746	5e-28
340721258	793	PREDICTED: cullin-3-like [Bombus terrest	0.805	0.104	0.746	8e-28

>gi|312380841|gb|EFR26730.1| hypothetical protein AND_06989 [Anopheles darlingi]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/87 (77%), Positives = 70/87 (80%)

Query: 14  KSSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMV 73
           + S  K  G    R   MTMDEKYV+ IW LLKNAIQEIQKKNNSGLSFEELYRNAYTMV
Sbjct: 319 RVSAPKKEGKMRIRAFPMTMDEKYVESIWALLKNAIQEIQKKNNSGLSFEELYRNAYTMV 378

Query: 74  LHKHGERLYSGLKEVVTAHLETKVGVE 100
           LHKHGERLY+GLKEVVT HLETKV  E
Sbjct: 379 LHKHGERLYTGLKEVVTHHLETKVREE 405

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081955|ref|XP_967420.1| PREDICTED: similar to cullin [Tribolium castaneum] gi|270007361|gb|EFA03809.1| hypothetical protein TcasGA2_TC013922 [Tribolium castaneum]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 66/83 (79%), Positives = 70/83 (84%)

Query: 15 SSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVL 74
          SSL K  G    R   MTMDEKYV+ IW LLKNAIQEIQKKNNSGLSFEELYRNAYTMVL
Sbjct: 7  SSLSKKEGKMRIRAFPMTMDEKYVESIWALLKNAIQEIQKKNNSGLSFEELYRNAYTMVL 66

Query: 75 HKHGERLYSGLKEVVTAHLETKV 97
          HKHGE+LY+GLKEVVT HLE+KV
Sbjct: 67 HKHGEKLYTGLKEVVTHHLESKV 89

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118789340|ref|XP_317352.3| AGAP008105-PA [Anopheles gambiae str. PEST] gi|116123172|gb|EAA12346.3| AGAP008105-PA [Anopheles gambiae str. PEST]

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/82 (80%), Positives = 68/82 (82%)

Query: 19  KSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHG 78
           K  G    R   MTMDEKYV+ IW LLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHG
Sbjct: 8   KKEGKMRIRAFPMTMDEKYVESIWSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHG 67

Query: 79  ERLYSGLKEVVTAHLETKVGVE 100
           ERLYSGLKEVVT HLE+KV  E
Sbjct: 68  ERLYSGLKEVVTHHLESKVREE 89

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170050494|ref|XP_001861336.1| cullin-3 [Culex quinquefasciatus] gi|167872131|gb|EDS35514.1| cullin-3 [Culex quinquefasciatus]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/72 (87%), Positives = 66/72 (91%)

Query: 29  HLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEV 88
           H MTMDEKYV+ IW LLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLY+GLK+V
Sbjct: 84  HPMTMDEKYVESIWSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYTGLKDV 143

Query: 89  VTAHLETKVGVE 100
           VT HLETKV  E
Sbjct: 144 VTQHLETKVREE 155

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112840|ref|XP_001657640.1| cullin [Aedes aegypti] gi|157115409|ref|XP_001652595.1| cullin [Aedes aegypti] gi|108876917|gb|EAT41142.1| AAEL007187-PA [Aedes aegypti] gi|108877919|gb|EAT42144.1| AAEL006291-PA [Aedes aegypti]

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/79 (81%), Positives = 67/79 (84%)

Query: 19 KSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHG 78
          K  G    R   MTMDEKYV+ IW LLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHG
Sbjct: 7  KKEGKMRIRAFPMTMDEKYVESIWSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHG 66

Query: 79 ERLYSGLKEVVTAHLETKV 97
          ERLY+GLK+VVT HLETKV
Sbjct: 67 ERLYTGLKDVVTQHLETKV 85

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357611743|gb|EHJ67636.1| putative cullin 3 [Danaus plexippus]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/86 (79%), Positives = 72/86 (83%), Gaps = 1/86 (1%)

Query: 13 VKSSLVKSN-GHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYT 71
          +KS+L K   G    R   MTMDEKYV+ IW LLKNAIQEIQKKNNSGLSFEELYRNAYT
Sbjct: 2  MKSTLPKDKPGKMRIRAFPMTMDEKYVERIWSLLKNAIQEIQKKNNSGLSFEELYRNAYT 61

Query: 72 MVLHKHGERLYSGLKEVVTAHLETKV 97
          MVLHKHGERLY+GLKEVVT HLETKV
Sbjct: 62 MVLHKHGERLYTGLKEVVTHHLETKV 87

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024134|ref|XP_002432485.1| Cullin-3, putative [Pediculus humanus corporis] gi|212517918|gb|EEB19747.1| Cullin-3, putative [Pediculus humanus corporis]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/67 (91%), Positives = 64/67 (95%)

Query: 31 MTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVT 90
          MTMDEKYV+ IW LLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHK+GERLYSGL+EVVT
Sbjct: 18 MTMDEKYVESIWGLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKYGERLYSGLREVVT 77

Query: 91 AHLETKV 97
           HLETKV
Sbjct: 78 QHLETKV 84

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321459316|gb|EFX70371.1| hypothetical protein DAPPUDRAFT_228373 [Daphnia pulex]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/71 (84%), Positives = 66/71 (92%)

Query: 27 RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLK 86
          R   MTMDE+YV++IW LLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLY+GL+
Sbjct: 4  RAFPMTMDERYVENIWSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYNGLR 63

Query: 87 EVVTAHLETKV 97
          EVVT HLE+KV
Sbjct: 64 EVVTHHLESKV 74

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849910|ref|XP_003700577.1| PREDICTED: cullin-3-A-like [Megachile rotundata]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 68/83 (81%)

Query: 15 SSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVL 74
          S+++K       R    TMDEKYV+ IW LLKNAIQEIQKKNNSGLSFEELYRNAYTMVL
Sbjct: 5  SNMIKKESKMRIRAFPTTMDEKYVESIWALLKNAIQEIQKKNNSGLSFEELYRNAYTMVL 64

Query: 75 HKHGERLYSGLKEVVTAHLETKV 97
          HK+GERLY+GLKEVVT HLE KV
Sbjct: 65 HKYGERLYTGLKEVVTHHLENKV 87

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721258|ref|XP_003399041.1| PREDICTED: cullin-3-like [Bombus terrestris]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 68/83 (81%)

Query: 15 SSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVL 74
          S+++K       R    TMDEKYV+ IW LLKNAIQEIQKKNNSGLSFEELYRNAYTMVL
Sbjct: 5  SAMLKKESKMRIRAFPTTMDEKYVESIWALLKNAIQEIQKKNNSGLSFEELYRNAYTMVL 64

Query: 75 HKHGERLYSGLKEVVTAHLETKV 97
          HK+GERLY+GLKEVVT HLE KV
Sbjct: 65 HKYGERLYTGLKEVVTHHLENKV 87

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
UNIPROTKB|H7C1L6	192	CUL3 "Cullin-3" [Homo sapiens	0.650	0.348	0.850	3.2e-26
UNIPROTKB|A4IHP4	768	cul3 "Cullin-3" [Xenopus (Silu	0.805	0.108	0.727	7.9e-26
UNIPROTKB|Q6DE95	768	cul3a "Cullin-3-A" [Xenopus la	0.805	0.108	0.727	7.9e-26
UNIPROTKB|Q6GPF3	768	cul3b "Cullin-3-B" [Xenopus la	0.805	0.108	0.727	7.9e-26
UNIPROTKB|E1BIN5	768	CUL3 "Uncharacterized protein"	0.805	0.108	0.715	1.7e-25
UNIPROTKB|Q13618	768	CUL3 "Cullin-3" [Homo sapiens	0.805	0.108	0.715	1.7e-25
MGI|MGI:1347360	768	Cul3 "cullin 3" [Mus musculus	0.805	0.108	0.715	1.7e-25
RGD|1308190	768	Cul3 "cullin 3" [Rattus norveg	0.805	0.108	0.715	1.7e-25
ZFIN|ZDB-GENE-030131-3376	766	cul3a "cullin 3a" [Danio rerio	0.650	0.087	0.850	2.7e-25
ZFIN|ZDB-GENE-081007-1	766	cul3b "cullin 3b" [Danio rerio	0.650	0.087	0.850	2.7e-25

UNIPROTKB|H7C1L6 CUL3 "Cullin-3" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 57/67 (85%), Positives = 61/67 (91%)

Query:    31 MTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVT 90
             MTMDEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGE+LY+GL+EVVT
Sbjct:    44 MTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVT 103

Query:    91 AHLETKV 97
              HL  KV
Sbjct:   104 EHLINKV 110

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

UNIPROTKB|A4IHP4 cul3 "Cullin-3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 302 (111.4 bits), Expect = 7.9e-26, P = 7.9e-26
 Identities = 64/88 (72%), Positives = 69/88 (78%)

Query:    15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
             S+L KS G R       R   MTMDEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct:     2 SNLGKSTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61

Query:    70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
             YTMVLHKHGE+LY+GL+EVVT HL  KV
Sbjct:    62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89

GO:0000090 "mitotic anaphase" evidence=ISS

GO:0000910 "cytokinesis" evidence=ISS

GO:0005827 "polar microtubule" evidence=ISS

GO:0006513 "protein monoubiquitination" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0007229 "integrin-mediated signaling pathway" evidence=ISS

GO:0016477 "cell migration" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0017145 "stem cell division" evidence=ISS

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=ISS

GO:0035024 "negative regulation of Rho protein signal transduction" evidence=ISS

GO:0040016 "embryonic cleavage" evidence=ISS

GO:0043149 "stress fiber assembly" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0048208 "COPII vesicle coating" evidence=ISS

GO:0051322 "anaphase" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

UNIPROTKB|Q6DE95 cul3a "Cullin-3-A" [Xenopus laevis (taxid:8355)]

 Score = 302 (111.4 bits), Expect = 7.9e-26, P = 7.9e-26
 Identities = 64/88 (72%), Positives = 69/88 (78%)

Query:    15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
             S+L KS G R       R   MTMDEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct:     2 SNLGKSTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61

Query:    70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
             YTMVLHKHGE+LY+GL+EVVT HL  KV
Sbjct:    62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89

GO:0000090 "mitotic anaphase" evidence=ISS

GO:0000910 "cytokinesis" evidence=ISS

GO:0005827 "polar microtubule" evidence=ISS

GO:0006513 "protein monoubiquitination" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0007229 "integrin-mediated signaling pathway" evidence=ISS

GO:0016477 "cell migration" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0017145 "stem cell division" evidence=ISS

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=ISS

GO:0035024 "negative regulation of Rho protein signal transduction" evidence=ISS

GO:0040016 "embryonic cleavage" evidence=ISS

GO:0043149 "stress fiber assembly" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0048208 "COPII vesicle coating" evidence=ISS

GO:0051322 "anaphase" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

UNIPROTKB|Q6GPF3 cul3b "Cullin-3-B" [Xenopus laevis (taxid:8355)]

 Score = 302 (111.4 bits), Expect = 7.9e-26, P = 7.9e-26
 Identities = 64/88 (72%), Positives = 69/88 (78%)

Query:    15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
             S+L KS G R       R   MTMDEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct:     2 SNLGKSTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61

Query:    70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
             YTMVLHKHGE+LY+GL+EVVT HL  KV
Sbjct:    62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89

GO:0000090 "mitotic anaphase" evidence=ISS

GO:0000910 "cytokinesis" evidence=ISS

GO:0005827 "polar microtubule" evidence=ISS

GO:0006513 "protein monoubiquitination" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0007229 "integrin-mediated signaling pathway" evidence=ISS

GO:0016477 "cell migration" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0017145 "stem cell division" evidence=ISS

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=ISS

GO:0035024 "negative regulation of Rho protein signal transduction" evidence=ISS

GO:0040016 "embryonic cleavage" evidence=ISS

GO:0043149 "stress fiber assembly" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0048208 "COPII vesicle coating" evidence=ISS

GO:0051322 "anaphase" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

UNIPROTKB|E1BIN5 CUL3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 299 (110.3 bits), Expect = 1.7e-25, P = 1.7e-25
 Identities = 63/88 (71%), Positives = 68/88 (77%)

Query:    15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
             S+L K  G R       R   MTMDEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct:     2 SNLSKGTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61

Query:    70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
             YTMVLHKHGE+LY+GL+EVVT HL  KV
Sbjct:    62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89

GO:0048208 "COPII vesicle coating" evidence=IEA

GO:0043149 "stress fiber assembly" evidence=IEA

GO:0040016 "embryonic cleavage" evidence=IEA

GO:0035024 "negative regulation of Rho protein signal transduction" evidence=IEA

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA

GO:0030332 "cyclin binding" evidence=IEA

GO:0017145 "stem cell division" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0008054 "cyclin catabolic process" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0005827 "polar microtubule" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0001831 "trophectodermal cellular morphogenesis" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0000090 "mitotic anaphase" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

UNIPROTKB|Q13618 CUL3 "Cullin-3" [Homo sapiens (taxid:9606)]

 Score = 299 (110.3 bits), Expect = 1.7e-25, P = 1.7e-25
 Identities = 63/88 (71%), Positives = 68/88 (77%)

Query:    15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
             S+L K  G R       R   MTMDEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct:     2 SNLSKGTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61

Query:    70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
             YTMVLHKHGE+LY+GL+EVVT HL  KV
Sbjct:    62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0001831 "trophectodermal cellular morphogenesis" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0030332 "cyclin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IDA

GO:0000090 "mitotic anaphase" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0005827 "polar microtubule" evidence=IDA

GO:0051322 "anaphase" evidence=IMP

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0035024 "negative regulation of Rho protein signal transduction" evidence=IMP

GO:0043149 "stress fiber assembly" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0006513 "protein monoubiquitination" evidence=IDA

GO:0048208 "COPII vesicle coating" evidence=IMP

GO:0007229 "integrin-mediated signaling pathway" evidence=ISS

GO:0017145 "stem cell division" evidence=ISS

GO:0040016 "embryonic cleavage" evidence=ISS

GO:0032467 "positive regulation of cytokinesis" evidence=IMP

GO:0000209 "protein polyubiquitination" evidence=IDA

GO:0031208 "POZ domain binding" evidence=IDA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0008284 "positive regulation of cell proliferation" evidence=TAS

GO:0097193 "intrinsic apoptotic signaling pathway" evidence=TAS

GO:0008054 "cyclin catabolic process" evidence=IDA

GO:0007050 "cell cycle arrest" evidence=TAS

MGI|MGI:1347360 Cul3 "cullin 3" [Mus musculus (taxid:10090)]

 Score = 299 (110.3 bits), Expect = 1.7e-25, P = 1.7e-25
 Identities = 63/88 (71%), Positives = 68/88 (77%)

Query:    15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
             S+L K  G R       R   MTMDEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct:     2 SNLSKGTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61

Query:    70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
             YTMVLHKHGE+LY+GL+EVVT HL  KV
Sbjct:    62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89

GO:0000090 "mitotic anaphase" evidence=ISO

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0000910 "cytokinesis" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001831 "trophectodermal cellular morphogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005827 "polar microtubule" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0007229 "integrin-mediated signaling pathway" evidence=IMP

GO:0007369 "gastrulation" evidence=IMP

GO:0008054 "cyclin catabolic process" evidence=ISS

GO:0016055 "Wnt receptor signaling pathway" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016477 "cell migration" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0017145 "stem cell division" evidence=IMP

GO:0030332 "cyclin binding" evidence=IPI

GO:0031208 "POZ domain binding" evidence=ISO

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0032467 "positive regulation of cytokinesis" evidence=ISO

GO:0035024 "negative regulation of Rho protein signal transduction" evidence=ISO

GO:0040016 "embryonic cleavage" evidence=IMP

GO:0043149 "stress fiber assembly" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0048208 "COPII vesicle coating" evidence=ISO

GO:0051322 "anaphase" evidence=ISO

RGD|1308190 Cul3 "cullin 3" [Rattus norvegicus (taxid:10116)]

 Score = 299 (110.3 bits), Expect = 1.7e-25, P = 1.7e-25
 Identities = 63/88 (71%), Positives = 68/88 (77%)

Query:    15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
             S+L K  G R       R   MTMDEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct:     2 SNLSKGTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61

Query:    70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
             YTMVLHKHGE+LY+GL+EVVT HL  KV
Sbjct:    62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89

GO:0000090 "mitotic anaphase" evidence=IEA;ISO

GO:0000209 "protein polyubiquitination" evidence=ISO;ISS

GO:0000902 "cell morphogenesis" evidence=ISO

GO:0000910 "cytokinesis" evidence=IEA;ISO

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001831 "trophectodermal cellular morphogenesis" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005827 "polar microtubule" evidence=IEA;ISO

GO:0006513 "protein monoubiquitination" evidence=ISO;ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO;ISS

GO:0007229 "integrin-mediated signaling pathway" evidence=ISO;ISS

GO:0007369 "gastrulation" evidence=IEA;ISO

GO:0008054 "cyclin catabolic process" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA;ISO

GO:0016477 "cell migration" evidence=IEA;ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0017145 "stem cell division" evidence=ISO;ISS

GO:0030332 "cyclin binding" evidence=IEA;ISO

GO:0031208 "POZ domain binding" evidence=ISO;ISS

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=ISO;ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0032467 "positive regulation of cytokinesis" evidence=ISO;ISS

GO:0035024 "negative regulation of Rho protein signal transduction" evidence=IEA;ISO

GO:0040016 "embryonic cleavage" evidence=ISO;ISS

GO:0043149 "stress fiber assembly" evidence=IEA;ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0048208 "COPII vesicle coating" evidence=ISO;ISS

GO:0051322 "anaphase" evidence=ISO

ZFIN|ZDB-GENE-030131-3376 cul3a "cullin 3a" [Danio rerio (taxid:7955)]

 Score = 297 (109.6 bits), Expect = 2.7e-25, P = 2.7e-25
 Identities = 57/67 (85%), Positives = 62/67 (92%)

Query:    31 MTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVT 90
             MTMDEKYV +IW LLKNAIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGE+LY+GL+EVVT
Sbjct:    21 MTMDEKYVNNIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVT 80

Query:    91 AHLETKV 97
              HL  KV
Sbjct:    81 EHLINKV 87

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

ZFIN|ZDB-GENE-081007-1 cul3b "cullin 3b" [Danio rerio (taxid:7955)]

 Score = 297 (109.6 bits), Expect = 2.7e-25, P = 2.7e-25
 Identities = 57/67 (85%), Positives = 62/67 (92%)

Query:    31 MTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVT 90
             MTMDEKYV +IW LLKNAIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGE+LY+GL+EVVT
Sbjct:    22 MTMDEKYVNNIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVT 81

Query:    91 AHLETKV 97
              HL  KV
Sbjct:    82 EHLINKV 88

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q13618	CUL3_HUMAN	No assigned EC number	0.7159	0.8058	0.1080	yes	N/A
Q9JLV5	CUL3_MOUSE	No assigned EC number	0.7159	0.8058	0.1080	yes	N/A
A4IHP4	CUL3_XENTR	No assigned EC number	0.7272	0.8058	0.1080	yes	N/A
Q17391	CUL3_CAEEL	No assigned EC number	0.7313	0.6504	0.0862	yes	N/A
B5DF89	CUL3_RAT	No assigned EC number	0.7159	0.8058	0.1080	yes	N/A
Q09760	CUL3_SCHPO	No assigned EC number	0.5283	0.5145	0.0675	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	103
pfam00888	603	pfam00888, Cullin, Cullin family	3e-12

>gnl|CDD|216175 pfam00888, Cullin, Cullin family

 Score = 60.7 bits (147), Expect = 3e-12
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query: 42 WLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLE 94
          W  L +AI +I  K+ S L + ELY   Y  V HK GE+LY+ LKE +  ++ 
Sbjct: 1  WEKLLDAIDQILLKSFSSLDYMELYTAVYNYVPHKLGEKLYNRLKEYLEEYVA 53

Length = 603

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
PF00888	588	Cullin: Cullin family; InterPro: IPR001373 Cullins	99.03
COG5647	773	Cullin, a subunit of E3 ubiquitin ligase [Posttran	98.72
KOG2166|consensus	725		98.66
KOG2284|consensus	728		97.86
KOG2166|consensus	725		90.77
KOG2285|consensus	777		89.23
PF10163	86	EnY2: Transcription factor e(y)2; InterPro: IPR018	87.73
PF08328	115	ASL_C: Adenylosuccinate lyase C-terminal; InterPro	82.43

>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3)

Probab=99.03  E-value=4.7e-10  Score=91.12  Aligned_cols=56  Identities=41%  Similarity=0.663  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHhhhh
Q psy10549         42 WLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLETKV   97 (103)
Q Consensus        42 W~~L~~Ai~~I~~~~~~~lsyeeLY~~VYnlC~~~~g~~LY~~lk~~i~~~l~~~~   97 (103)
                      |+.|++||+.|+.+.....+||++|++||++|.+++|+.||+++++++.+|+..++
T Consensus         1 W~~l~~~i~~i~~~~~~~~~~~~lY~~vy~l~~~~~~~~LY~~l~~~i~~~~~~~~   56 (588)
T PF00888_consen    1 WEILEEAIDQIFKKSISKLSYMELYTCVYNLCDNKYGEQLYDKLKEFISEYLKNII   56 (588)
T ss_dssp             HHHHHHHHHHHHTT-GCCSHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCCChhHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988889999999999999999999999999999999999998854

Cullins are found throughout eukaryotes. Humans express seven cullins (Cul1, 2, 3, 4A, 4B, 5 and 7), each forming part of a multi-subunit ubiquitin complex. Cullin-RING ubiquitin ligases (CRLs), such as Cul1 (SCF) [], play an essential role in targeting proteins for ubiquitin-mediated destruction; as such, they are diverse in terms of composition and function, regulating many different processes from glucose sensing and DNA replication to limb patterning and circadian rhythms. The catalytic core of CRLs consists of a RING protein and a cullin family member. For Cul1, the C-terminal cullin-homology domain binds the RING protein. The RING protein appears to function as a docking site for ubiquitin-conjugating enzymes (E2s). Other proteins contain a cullin-homology domain, such as the APC2 subunit of the anaphase-promoting complex/cyclosome and the p53 cytoplasmic anchor PARC; both APC2 and PARC have ubiquitin ligase activity. The N-terminal region of cullins is more variable, and is used to interact with specific adaptor proteins [, , ]. This entry represents the N-terminal region of cullin proteins, which consists of several domains, including cullin repeat domain, a 4-helical bundle domain, an alpha+beta domain, and a winged helix-like domain.; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 2WZK_A 3DQV_D 3DPL_C 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_A 1U6G_A 4A0K_A ....

>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=5.5e-08  Score=82.47  Aligned_cols=74  Identities=23%  Similarity=0.313  Sum_probs=62.6

Q ss_pred             CceeecCCCCCCChhHHHHHHHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHhhccc----------------cHHHHH
Q psy10549         22 GHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKN---NSGLSFEELYRNAYTMVLHK----------------HGERLY   82 (103)
Q Consensus        22 ~kl~ik~~~~~~~~~~~e~~W~~L~~Ai~~I~~~~---~~~lsyeeLY~~VYnlC~~~----------------~g~~LY   82 (103)
                      .|+.+..+  ..+.++|+.+|+.++.||+.|+.+.   ...++||++|+.+||+|++.                .|+.||
T Consensus         6 ~ki~vp~~--~~~~~df~~~W~~i~~~I~~I~~~l~~~m~~l~~~evY~~IYn~c~n~tr~~~~~~~~~~~~~~~~s~li   83 (773)
T COG5647           6 IKIDVPRK--TLSEEDFESTWEFIERAIGQIFERLYDSMAILSLMEVYTKIYNYCTNKTRSLESDLRWKIDFIYLGSRLI   83 (773)
T ss_pred             cccccCcc--CCchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcccccchhcccchhHHHHHHHHHH
Confidence            45555442  5788999999999999999999653   46778999999999999887                789999


Q ss_pred             HHHHHHHHHHHhhhh
Q psy10549         83 SGLKEVVTAHLETKV   97 (103)
Q Consensus        83 ~~lk~~i~~~l~~~~   97 (103)
                      ++|+.+.++++...-
T Consensus        84 ~~L~~~~k~~i~~~~   98 (773)
T COG5647          84 QKLVDYAKNYIEEYN   98 (773)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988765

>KOG2166|consensus

Probab=98.66  E-value=5.2e-08  Score=83.11  Aligned_cols=68  Identities=25%  Similarity=0.330  Sum_probs=56.4

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccccH----HHHHHHHHHHHHHHHhhhhccC
Q psy10549         33 MDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHG----ERLYSGLKEVVTAHLETKVGVE  100 (103)
Q Consensus        33 ~~~~~~e~~W~~L~~Ai~~I~~~~~~~lsyeeLY~~VYnlC~~~~g----~~LY~~lk~~i~~~l~~~~~~~  100 (103)
                      ....+++++|..|..|++.+........+|+++|+++|++|++++|    ++||+++++++.+|+.+.+.+.
T Consensus        12 ~~w~~~~~~~~~l~~~~~~~s~~~~~~~~~~~ly~t~~~~~~~k~~~~~~~~lY~~l~~~~~~yl~~~~~~~   83 (725)
T KOG2166|consen   12 VGWSYIETGITKLKRIIEGLSEPAFEQYQFMYLYTTIYNMCLQKPPHDYSQQLYDKYREVIEEYLIQTVLPA   83 (725)
T ss_pred             ccHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777777777777775554445777899999999999999999    9999999999999999988765

>KOG2284|consensus

Probab=97.86  E-value=3.1e-05  Score=63.59  Aligned_cols=64  Identities=19%  Similarity=0.433  Sum_probs=56.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhhccc---cHHHHHHHHHHHHHHHHhhhhc
Q psy10549         35 EKYVQDIWLLLKNAIQEIQKKNN-SGLSFEELYRNAYTMVLHK---HGERLYSGLKEVVTAHLETKVG   98 (103)
Q Consensus        35 ~~~~e~~W~~L~~Ai~~I~~~~~-~~lsyeeLY~~VYnlC~~~---~g~~LY~~lk~~i~~~l~~~~~   98 (103)
                      ..+||++|..|...|..|.+-+. ....|-.-|..||++|..-   .|+.||+.++.++++|+++.+.
T Consensus         8 vv~fd~~w~~l~~si~~ii~l~~i~~~~w~~~fsdvy~icvs~p~pl~erly~e~k~~i~~hvrq~~~   75 (728)
T KOG2284|consen    8 VVEFDKVWVQLRPSIIDIINLRPITNVQWHHKFSDVYDICVSIPTPLSERLYNEVKACIQEHVRQKRQ   75 (728)
T ss_pred             eeeHHHHHHHHHHHHHHHHhccchhccccccchhhHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhh
Confidence            47899999999999999988775 5678999999999999664   8999999999999999986544

>KOG2166|consensus

Probab=90.77  E-value=0.18  Score=43.79  Aligned_cols=42  Identities=21%  Similarity=0.283  Sum_probs=37.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhhccc
Q psy10549         34 DEKYVQDIWLLLKNAIQEIQKKNNSGLS--FEELYRNAYTMVLHK   76 (103)
Q Consensus        34 ~~~~~e~~W~~L~~Ai~~I~~~~~~~ls--yeeLY~~VYnlC~~~   76 (103)
                      .+++++..|..++.+++.++.... ..+  +|++|+.+|.+|+.-
T Consensus         6 ~~~~~~~~w~~~~~~~~~l~~~~~-~~s~~~~~~~~~~~ly~t~~   49 (725)
T KOG2166|consen    6 KEIDLEVGWSYIETGITKLKRIIE-GLSEPAFEQYQFMYLYTTIY   49 (725)
T ss_pred             cccchhccHHHHHHHHHHHHHHHH-hhccccccHHHHHHHHHHHH
Confidence            468999999999999999999875 555  999999999999873

>KOG2285|consensus

Probab=89.23  E-value=0.56  Score=39.51  Aligned_cols=62  Identities=8%  Similarity=0.270  Sum_probs=51.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhhccc--cHHHHHHHHHHHHHHHHhh
Q psy10549         34 DEKYVQDIWLLLKNAIQEIQKKNN-SGLSFEELYRNAYTMVLHK--HGERLYSGLKEVVTAHLET   95 (103)
Q Consensus        34 ~~~~~e~~W~~L~~Ai~~I~~~~~-~~lsyeeLY~~VYnlC~~~--~g~~LY~~lk~~i~~~l~~   95 (103)
                      +..-||+.|.+-+.-+-++....+ .+-.|++||-+||..|.-.  -..++|+.|+..|-+++.+
T Consensus         9 ~r~qFee~W~~~rpIVlkLLrQ~sVt~~~WqDLF~~Vh~vclWddkGpaKI~d~L~~dI~efi~q   73 (777)
T KOG2285|consen    9 DRDQFEEEWSKARPIVLKLLRQKSVTPAAWQDLFYHVHKVCLWDDKGPAKIRDILTRDINEFIHQ   73 (777)
T ss_pred             chhhhhhhccccchHHHHHHhhccCCHHHHHHHHhhheeeeeecCCCcHHHHHHHHHHHHHHHHH
Confidence            456899999999999998888764 4556999999999999654  5578999999988888764

>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []

Probab=87.73  E-value=4.2  Score=25.88  Aligned_cols=56  Identities=18%  Similarity=0.252  Sum_probs=40.8

Q ss_pred             HHHHH-HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Q psy10549         38 VQDIW-LLLKNAIQEIQKK-NNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHL   93 (103)
Q Consensus        38 ~e~~W-~~L~~Ai~~I~~~-~~~~lsyeeLY~~VYnlC~~~~g~~LY~~lk~~i~~~l   93 (103)
                      .+.+| +.++..+..+.+. ....++|++|+..|--.+.....+.+...+...|..+|
T Consensus        28 ~e~GW~d~vr~~~re~i~~~g~~~~~~~~l~~~i~P~Ar~~VP~~vk~ell~~Ir~~L   85 (86)
T PF10163_consen   28 IECGWRDEVRQLCREIIRERGIDNLTFEDLLEEITPKARAMVPDEVKKELLQRIRAFL   85 (86)
T ss_dssp             HHTTHHHHHHHHHHHHHHHH-TTTSBHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHHH
T ss_pred             HHCChHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHh
Confidence            46678 5666666666666 45789999999999999888877777766666666655

This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.

>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli)

Probab=82.43  E-value=0.66  Score=31.69  Aligned_cols=45  Identities=18%  Similarity=0.299  Sum_probs=31.6

Q ss_pred             CCCCceeecCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q psy10549         19 KSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELY   66 (103)
Q Consensus        19 ~~~~kl~ik~~~~~~~~~~~e~~W~~L~~Ai~~I~~~~~~~lsyeeLY   66 (103)
                      +|-+||.++.-   .-..++++.|+.|.++|+.|+++....-.||.|=
T Consensus        32 kGl~Kl~vn~~---~l~~dL~~nWeVlaEpIQTvmRr~g~~~pYE~LK   76 (115)
T PF08328_consen   32 KGLGKLEVNEE---RLAEDLDENWEVLAEPIQTVMRRYGIPNPYEKLK   76 (115)
T ss_dssp             HHHHTEEE-HH---HHHHHHCT-GGGGHHHHHHHHHHTT-SSHHHHHH
T ss_pred             HHHhcccCCHH---HHHHHHHHCHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            45667777751   2257899999999999999999876666666653

It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	103
4ap2_B	410	Crystal Structure Of The Human Klhl11-cul3 Complex		1e-29
4apf_B	388	Crystal Structure Of The Human Klhl11-cul3 Complex		7e-29
4eoz_B	364	Crystal Structure Of The Spop Btb Domain Complexed		2e-25

>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 410

Iteration: 1
 Score =  124 bits (311), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 68/88 (77%), Gaps = 5/88 (5%)
Query: 15 SSLVKSNGHRTS-----RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNA 69
          S+L K  G R       R   MTMDEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNA
Sbjct: 2  SNLSKGTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNA 61
Query: 70 YTMVLHKHGERLYSGLKEVVTAHLETKV 97
          YTMVLHKHGE+LY+GL+EVVT HL  KV
Sbjct: 62 YTMVLHKHGEKLYTGLREVVTEHLINKV 89

>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a Resolution Length = 388

Iteration: 1
 Score =  122 bits (305), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 57/67 (85%), Positives = 61/67 (91%)
Query: 31 MTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVT 90
          MTMDEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGE+LY+GL+EVVT
Sbjct: 1  MTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVT 60
Query: 91 AHLETKV 97
           HL  KV
Sbjct: 61 EHLINKV 67

>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 364

Iteration: 1
 Score =  110 bits (275), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 32 TMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTA 91
          T DEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNAYT VLHKHGE+LY+GL+EVVT 
Sbjct: 7  TXDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTXVLHKHGEKLYTGLREVVTE 66
Query: 92 HLETKV 97
          HL  KV
Sbjct: 67 HLINKV 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
2hye_C	759	Cullin-4A, CUL-4A; beta propeller, ring finger, zi	6e-20
4eoz_B	364	Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro	2e-18
4a64_A	354	Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo	6e-16
4ap2_B	410	Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c	1e-15
2wzk_A	391	Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho	3e-10
1ldj_A	760	Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc	2e-08

>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759

 Score = 82.2 bits (202), Expect = 6e-20
 Identities = 17/66 (25%), Positives = 32/66 (48%)

Query: 32  TMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTA 91
            + + Y QD W  L  A++ +Q   +   + EELY+    +  HK    LY  L++    
Sbjct: 53  RLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACED 112

Query: 92  HLETKV 97
           H++ ++
Sbjct: 113 HVQAQI 118

>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Length = 364

 Score = 77.2 bits (189), Expect = 2e-18
 Identities = 57/67 (85%), Positives = 61/67 (91%)

Query: 31 MTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVT 90
          MTMDEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGE+LY+GL+EVVT
Sbjct: 6  MTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVT 65

Query: 91 AHLETKV 97
           HL  KV
Sbjct: 66 EHLINKV 72

>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Length = 354

 Score = 70.3 bits (171), Expect = 6e-16
 Identities = 17/66 (25%), Positives = 33/66 (50%)

Query: 32 TMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTA 91
           + E Y  + W  LK A++ IQ   +   + EELY+    +  +K    LY  L+++   
Sbjct: 4  KLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICED 63

Query: 92 HLETKV 97
          H++ ++
Sbjct: 64 HIKAQI 69

>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} PDB: 4apf_B Length = 410

 Score = 69.5 bits (169), Expect = 1e-15
 Identities = 58/71 (81%), Positives = 62/71 (87%)

Query: 27 RDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLK 86
          R   MTMDEKYV  IW LLKNAIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGE+LY+GL+
Sbjct: 19 RAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLR 78

Query: 87 EVVTAHLETKV 97
          EVVT HL  KV
Sbjct: 79 EVVTEHLINKV 89

>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391

 Score = 54.1 bits (129), Expect = 3e-10
 Identities = 8/62 (12%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 39 QDIWLLLKNAIQEIQKKNN-SGLSFEELYRNAYTMVL--HKHGERLYSGLKEVVTAHLET 95
          +D W  +   + ++ ++ + +   + +L+ + + + L   K   +++  LKE +   ++ 
Sbjct: 16 EDKWDFMHPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGSSKIHQALKEDILEFIKQ 75

Query: 96 KV 97
            
Sbjct: 76 AQ 77

>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760

 Score = 49.4 bits (117), Expect = 2e-08
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 28/86 (32%)

Query: 40 DIWLLLKNAIQEIQKKNNSGLS-FEELYRNAYTMVLHKH--------------------- 77
           IW  L+  IQ++  + +   S + ELY + Y      H                     
Sbjct: 3  QIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTP 62

Query: 78 ------GERLYSGLKEVVTAHLETKV 97
                G  LY  LKE +  +L   +
Sbjct: 63 GGAQFVGLELYKRLKEFLKNYLTNLL 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
4ap2_B	410	Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c	99.87
2hye_C	759	Cullin-4A, CUL-4A; beta propeller, ring finger, zi	99.75
4eoz_B	364	Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro	99.74
4a64_A	354	Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo	99.72
2wzk_A	391	Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho	99.5
1ldj_A	760	Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc	99.35
3mhs_B	96	Protein SUS1; multi-protein complex, hydrolase-tra	88.64
4dhx_B	101	Enhancer of yellow 2 transcription factor homolog,	81.12

>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}

Probab=99.87  E-value=2.9e-22  Score=157.89  Aligned_cols=87  Identities=68%  Similarity=0.977  Sum_probs=72.7

Q ss_pred             ccCCCCCCCceeecCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Q psy10549         14 KSSLVKSNGHRTSRDHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHL   93 (103)
Q Consensus        14 ~~~~~~~~~kl~ik~~~~~~~~~~~e~~W~~L~~Ai~~I~~~~~~~lsyeeLY~~VYnlC~~~~g~~LY~~lk~~i~~~l   93 (103)
                      .++|+.+++||+|+||+|.+++.+++++|..|++||+.|++++..++|||+|||+|||+|++++|++||++|+++|++|+
T Consensus         6 ~~~~~~~~~k~~i~~~~~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~k~g~~LY~~l~~~~~~~l   85 (410)
T 4ap2_B            6 KGTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHL   85 (410)
T ss_dssp             -----------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCeeeeeCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccC
Q psy10549         94 ETKVGVE  100 (103)
Q Consensus        94 ~~~~~~~  100 (103)
                      ...+.|+
T Consensus        86 ~~~v~~~   92 (410)
T 4ap2_B           86 INKVRED   92 (410)
T ss_dssp             HHTHHHH
T ss_pred             HHHHHHH
Confidence            9666554

>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*

Probab=99.75  E-value=5.5e-19  Score=148.01  Aligned_cols=79  Identities=22%  Similarity=0.439  Sum_probs=72.0

Q ss_pred             CCCCceeecCCC--CCCChhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHhhh
Q psy10549         19 KSNGHRTSRDHL--MTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLETK   96 (103)
Q Consensus        19 ~~~~kl~ik~~~--~~~~~~~~e~~W~~L~~Ai~~I~~~~~~~lsyeeLY~~VYnlC~~~~g~~LY~~lk~~i~~~l~~~   96 (103)
                      ++++|++|+|||  +.++++++|++|..|++||+.|++++..++|||+|||+|||+|++++|++||++|+++|++|+...
T Consensus        38 ~~~~~~~i~~~~~~~~~~~~~~e~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~~~~LY~~l~~~~~~~l~~~  117 (759)
T 2hye_C           38 GGSKKLVIKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQ  117 (759)
T ss_dssp             ---CCCCEETCCCCSCSSCCTTTTHHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccccCCCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            568999999998  667778889999999999999999999999999999999999999999999999999999999876


Q ss_pred             h
Q psy10549         97 V   97 (103)
Q Consensus        97 ~   97 (103)
                      +
T Consensus       118 ~  118 (759)
T 2hye_C          118 I  118 (759)
T ss_dssp             H
T ss_pred             H
Confidence            5

>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B

Probab=99.74  E-value=1.5e-18  Score=134.38  Aligned_cols=73  Identities=78%  Similarity=1.141  Sum_probs=65.5

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHhhhhccC
Q psy10549         28 DHLMTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLETKVGVE  100 (103)
Q Consensus        28 ~~~~~~~~~~~e~~W~~L~~Ai~~I~~~~~~~lsyeeLY~~VYnlC~~~~g~~LY~~lk~~i~~~l~~~~~~~  100 (103)
                      +|.|.+++++++++|..|++||+.|++++..++|||+|||+|||+|++++|++||++|+++|++|+...+.|+
T Consensus         3 ~~~~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~~~   75 (364)
T 4eoz_B            3 AFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVRED   75 (364)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             CCCCCCChhhHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667889999999999999999999999999999999999999999999999999999999999999666554

>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}

Probab=99.72  E-value=7.5e-18  Score=130.07  Aligned_cols=69  Identities=25%  Similarity=0.496  Sum_probs=65.4

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHhhhhcc
Q psy10549         31 MTMDEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLETKVGV   99 (103)
Q Consensus        31 ~~~~~~~~e~~W~~L~~Ai~~I~~~~~~~lsyeeLY~~VYnlC~~~~g~~LY~~lk~~i~~~l~~~~~~   99 (103)
                      |.+|+++++++|..|++||+.|++++++++|||+|||+|||+|++++|++||++|+++|++|+.+.+.+
T Consensus         3 ~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~~~g~~LY~~l~~~~~~~l~~~~~~   71 (354)
T 4a64_A            3 PKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKAQIHQ   71 (354)
T ss_dssp             CCCCSSSTTHHHHHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            568889999999999999999999999999999999999999999999999999999999999886654

>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}

Probab=99.50  E-value=1.5e-14  Score=112.99  Aligned_cols=66  Identities=12%  Similarity=0.290  Sum_probs=58.6

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHHhhhhcc
Q psy10549         34 DEKYVQDIWLLLKNAIQEIQKKNN-SGLSFEELYRNAYTMVLH--KHGERLYSGLKEVVTAHLETKVGV   99 (103)
Q Consensus        34 ~~~~~e~~W~~L~~Ai~~I~~~~~-~~lsyeeLY~~VYnlC~~--~~g~~LY~~lk~~i~~~l~~~~~~   99 (103)
                      ++.+|+++|..|++||+.|+.+++ +..+||+||++|||+|++  ++|++||++|+++|++|+..++.+
T Consensus        11 ~~~~~e~~W~~L~~ai~~I~~~~~~~~~s~e~LY~~vy~lc~~~~~~~~~LY~~l~~~~~~~l~~~~~~   79 (391)
T 2wzk_A           11 GSLQFEDKWDFMHPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGSSKIHQALKEDILEFIKQAQAR   79 (391)
T ss_dssp             -CCSHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999843 566899999999999986  699999999999999999987654

>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A

Probab=99.35  E-value=4.8e-13  Score=112.14  Aligned_cols=62  Identities=26%  Similarity=0.418  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhhccc---------------------------cHHHHHHHHHHHH
Q psy10549         38 VQDIWLLLKNAIQEIQKKN-NSGLSFEELYRNAYTMVLHK---------------------------HGERLYSGLKEVV   89 (103)
Q Consensus        38 ~e~~W~~L~~Ai~~I~~~~-~~~lsyeeLY~~VYnlC~~~---------------------------~g~~LY~~lk~~i   89 (103)
                      ||++|..|++||+.|++++ .+..+||+||++|||+|+++                           +|++||++++++|
T Consensus         1 f~~~W~~L~~ai~~I~~~~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l   80 (760)
T 1ldj_A            1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL   80 (760)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHHHHHHHH
Confidence            5799999999999999983 34446999999999999986                           7899999999999


Q ss_pred             HHHHhhhhcc
Q psy10549         90 TAHLETKVGV   99 (103)
Q Consensus        90 ~~~l~~~~~~   99 (103)
                      ++|+..++.+
T Consensus        81 ~~~l~~~~~~   90 (760)
T 1ldj_A           81 KNYLTNLLKD   90 (760)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B

Probab=88.64  E-value=1.6  Score=27.74  Aligned_cols=60  Identities=15%  Similarity=0.200  Sum_probs=43.4

Q ss_pred             HHHHHH-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHhhhh
Q psy10549         37 YVQDIW-LLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLETKV   97 (103)
Q Consensus        37 ~~e~~W-~~L~~Ai~~I~~~~~~~lsyeeLY~~VYnlC~~~~g~~LY~~lk~~i~~~l~~~~   97 (103)
                      -.+.+| +.++.....+.+.. ..++|++|+..|.--......+.+...+...|...|..++
T Consensus        33 L~EcGW~Devr~~~r~~i~~~-~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~~v   93 (96)
T 3mhs_B           33 LLQEGWVDKVKDLTKSEMNIN-ESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEIV   93 (96)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHE
T ss_pred             HHHCCcHHHHHHHHHHHHHhc-CCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHHHHHh
Confidence            356788 56777776666665 7889999999998777666666666666666666666654

>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}

Probab=81.12  E-value=5.3  Score=25.53  Aligned_cols=55  Identities=15%  Similarity=0.199  Sum_probs=36.8

Q ss_pred             HHHHH-HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhhccccH----HHHHHHHHHHHHHH
Q psy10549         38 VQDIW-LLLKNAIQEIQKKN-NSGLSFEELYRNAYTMVLHKHG----ERLYSGLKEVVTAH   92 (103)
Q Consensus        38 ~e~~W-~~L~~Ai~~I~~~~-~~~lsyeeLY~~VYnlC~~~~g----~~LY~~lk~~i~~~   92 (103)
                      .+.+| +.++.-...+.+.. ...++|++|+..|---......    .+|..+++.|+.+|
T Consensus        38 ~EcGW~Devr~~~r~~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~rIr~fL~~~   98 (101)
T 4dhx_B           38 IECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQH   98 (101)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCcHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence            46788 56777777766654 3688999999988755544444    45555566666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	103
d2hyec2	347	a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapie	2e-21
d1ldja2	394	a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum	7e-10

>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.3 bits (208), Expect = 2e-21
 Identities = 17/63 (26%), Positives = 31/63 (49%)

Query: 35 EKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLE 94
          + Y QD W  L  A++ +Q   +   + EELY+    +  HK    LY  L++    H++
Sbjct: 2  DNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQ 61

Query: 95 TKV 97
           ++
Sbjct: 62 AQI 64

>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin homolog 1, Cul-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 7e-10
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 28/88 (31%)

Query: 38 VQDIWLLLKNAIQEIQKKNNSGLS-FEELYRNAYTMVLHKH------------------- 77
          +  IW  L+  IQ++  + +   S + ELY + Y      H                   
Sbjct: 1  LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQ 60

Query: 78 --------GERLYSGLKEVVTAHLETKV 97
                  G  LY  LKE +  +L   +
Sbjct: 61 TPGGAQFVGLELYKRLKEFLKNYLTNLL 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d2hyec2	347	Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1ldja2	394	Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax	99.35

>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.7e-17  Score=123.70  Aligned_cols=67  Identities=25%  Similarity=0.474  Sum_probs=63.4

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHhhhhccC
Q psy10549         34 DEKYVQDIWLLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYSGLKEVVTAHLETKVGVE  100 (103)
Q Consensus        34 ~~~~~e~~W~~L~~Ai~~I~~~~~~~lsyeeLY~~VYnlC~~~~g~~LY~~lk~~i~~~l~~~~~~~  100 (103)
                      |++++|++|..|++||+.|++++..++|||+||++||++|.+++|++||+++++.|++|+...+.|.
T Consensus         1 p~~~~e~~W~~L~~ai~~I~~~~~~~~s~e~lY~~vy~lc~~~~~~~LY~~l~~~l~~~~~~~~~~~   67 (347)
T d2hyec2           1 PDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQILPF   67 (347)
T ss_dssp             SCCTTTTHHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5679999999999999999999999999999999999999999999999999999999999887664

>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin homolog 1, Cul-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.3e-13  Score=101.99  Aligned_cols=62  Identities=27%  Similarity=0.472  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhhcccc---------------------------HHHHHHHHHHHH
Q psy10549         38 VQDIWLLLKNAIQEIQKKNNSGL-SFEELYRNAYTMVLHKH---------------------------GERLYSGLKEVV   89 (103)
Q Consensus        38 ~e~~W~~L~~Ai~~I~~~~~~~l-syeeLY~~VYnlC~~~~---------------------------g~~LY~~lk~~i   89 (103)
                      .|++|..|++||+.|+++++.+. +||+||++|||+|++++                           |+.||+++++++
T Consensus         1 ~d~~W~~L~~ai~~I~~~~~~~~~~~~~lY~~vy~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l   80 (394)
T d1ldja2           1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL   80 (394)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCccccccccccchhhhhhccccchhhhHHHHHHHHHHHHH
Confidence            37899999999999999876444 49999999999998764                           679999999999


Q ss_pred             HHHHhhhhcc
Q psy10549         90 TAHLETKVGV   99 (103)
Q Consensus        90 ~~~l~~~~~~   99 (103)
                      ++|+..++..
T Consensus        81 ~~~l~~i~~~   90 (394)
T d1ldja2          81 KNYLTNLLKD   90 (394)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999887643